RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18185
(190 letters)
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 42.1 bits (97), Expect = 2e-05
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 7/143 (4%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91
+ + E L R E + + IP
Sbjct: 141 FQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQI 200
Query: 92 LLIIRTTPYNQKDMEAIIKLRANTEGH--VLDDEALVTLSE-----IGTRSTLRYVVQLL 144
+ Y +++ I++ RA V + L +S+ G + R + L
Sbjct: 201 GFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVAL 260
Query: 145 TPAALTAKTNGRTAISKQDILEV 167
A A+ GR ++S+ + +
Sbjct: 261 KMACEMAEAMGRDSLSEDLVRKA 283
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 37.4 bits (86), Expect = 5e-04
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 17/136 (12%)
Query: 32 VLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDR 91
V IDEVHML +F L + LE + P +P+ +L R
Sbjct: 118 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT------------DPQKLPVTILSR 165
Query: 92 LLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTA 151
L + + + ++ N E + AL L+ +LR + L A
Sbjct: 166 CLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARA-AEGSLRDALSLTDQAIA-- 222
Query: 152 KTNGRTAISKQDILEV 167
+G +S Q + +
Sbjct: 223 --SGDGQVSTQAVSAM 236
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 37.0 bits (85), Expect = 8e-04
Identities = 16/179 (8%), Positives = 31/179 (17%), Gaps = 27/179 (15%)
Query: 1 MSAYKSDKLRKEINKVVNKYIDQGIA-----ELVPGVLFIDEVHML-------DLETFTY 48
+ + + + +P I+ + L
Sbjct: 187 LPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEK 246
Query: 49 LHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAI 108
H + I P I N L I K
Sbjct: 247 KHLNKRTQIFPPGIVTMNEYS------------VPKTLQARFVKQIDFRPKDYLKHCLER 294
Query: 109 IKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILEV 167
+ L+ L + Q + + K S ++
Sbjct: 295 SEFLLEKRIIQSGIALLLMLIWYRPVAEFA---QSIQSRIVEWKERLDKEFSLSVYQKM 350
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 34.1 bits (78), Expect = 0.006
Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 28/154 (18%)
Query: 30 PGVLFIDEVHMLD-----------------LETFTYLHRALESAIAPIVIFATNRGRCLV 72
P ++FIDE+ + L E A +V+ ATNR
Sbjct: 102 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR----- 156
Query: 73 RGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIG 132
DI+ P + DR I + K E I+++ A + + +D L L++
Sbjct: 157 ---PDILDPALLRPGRFDR--QIAIDAPDVKGREQILRIHARGK-PLAEDVDLALLAKRT 210
Query: 133 TRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166
+ LL AAL A GR I+ +D+ E
Sbjct: 211 PGFVGADLENLLNEAALLAAREGRRKITMKDLEE 244
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 32.1 bits (73), Expect = 0.024
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 28/157 (17%)
Query: 27 ELVPGVLFIDEVHML---DLETFTYLHRALESAIAP--------------IVIFATNRGR 69
+ P ++FIDE+ + H E + IVI ATNR
Sbjct: 102 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP- 160
Query: 70 CLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLS 129
D++ P + DR + + + E I+K+ + D ++
Sbjct: 161 -------DVLDPALLRPGRFDR--QVVVGLPDVRGREQILKVHMRRV-PLAPDIDAAIIA 210
Query: 130 EIGTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166
+ + L+ AAL A + +S + +
Sbjct: 211 RGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEK 247
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 31.4 bits (71), Expect = 0.051
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 12/49 (24%)
Query: 31 GVLFIDEVHMLDLETFTYLHRALES-AIAPI-----------VIFATNR 67
G LF+DE+ L LE L R +ES + ++ ATNR
Sbjct: 96 GTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 144
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 117
Score = 28.0 bits (62), Expect = 0.37
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 46 FTYLHRALESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDM 105
L + LE+ P+V + GR ++++ I + RL
Sbjct: 23 LDALRKFLETFDGPVVFSVESEGR--REALGELLARIKIAPQRIMRL------DEASDRG 74
Query: 106 EAIIKLRANTEGHVLDDEALVTLSE 130
++ A G V L + E
Sbjct: 75 RYLMIGAA-EHGFVDTVRNLALICE 98
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 28.6 bits (62), Expect = 0.43
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 93 LIIRTTPYNQKDMEAIIKLRANTEGHVLDDEALVTLSEIGTRSTLRYVVQLLTPAALTAK 152
L I+ + +++ + A E LD + L + TR +R V+ LL+ + T K
Sbjct: 177 LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT-TRGDIRQVINLLSTISTTTK 235
Query: 153 TNGRTAISKQDILEVS 168
T I+ ++I E+S
Sbjct: 236 T-----INHENINEIS 246
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 28.2 bits (61), Expect = 0.53
Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 16/166 (9%)
Query: 11 KEINKVVNKYIDQGIAELVPGVLFIDEVHMLDLETFTYLHRALESAIAPIVIFATNRGRC 70
E ++ +++ + + + + L TF L + + A +
Sbjct: 109 DEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIAL------V 162
Query: 71 LVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRANTEGHV--LDDEALVTL 128
+V D +++ + +IR +PY + + I+ RA ++ L +
Sbjct: 163 IVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMI 222
Query: 129 SEI--------GTRSTLRYVVQLLTPAALTAKTNGRTAISKQDILE 166
++I R R + +L +A A+ NGR I+ +D+ +
Sbjct: 223 ADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRK 268
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 343
Score = 24.8 bits (54), Expect = 7.0
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 56 AIAPIVIFATNR 67
A+ PI++ A +R
Sbjct: 2 AVIPILVIACDR 13
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 24.4 bits (52), Expect = 8.0
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 31 GVLFIDEVHMLDLETFTYLHRALESAI---APIVIFAT 65
++ DE H D + + L+ A A +V+ AT
Sbjct: 96 DIIICDECHSTDATSILGIGTVLDQAETAGARLVVLAT 133
>d1sfea2 c.55.7.1 (A:12-92) Ada DNA repair protein {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 23.5 bits (50), Expect = 9.1
Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 54 ESAIAPIVIFATNRGRCLVRGTDDIISPHGIPLDLLDRLLIIRTTPYNQKDMEAIIKLRA 113
+ + ++ + RG C + DD + +L P + + + ++ A
Sbjct: 9 DCELGRCLVAESERGICAILLGDD---DATLISELQQMFPAADNAPADLMFQQHVREVIA 65
Query: 114 NTEG 117
+
Sbjct: 66 SLNQ 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.374
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 659,618
Number of extensions: 29672
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 19
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)