BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18189
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MCB|A Chain A, Crystal Structure Of Nac Domains Of Human Nascent
Polypeptide- Associated Complex (Nac)
Length = 54
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/36 (80%), Positives = 34/36 (94%)
Query: 72 MSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNP 107
MSKLGL+Q+ GV+RVTIRKSKNILFVI KPDV+K+P
Sbjct: 2 MSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSP 37
>pdb|3MCE|A Chain A, Crystal Structure Of The Nac Domain Of Alpha Subunit Of
Nascent Polypeptide-Associated Complex(Nac)
pdb|3MCE|B Chain B, Crystal Structure Of The Nac Domain Of Alpha Subunit Of
Nascent Polypeptide-Associated Complex(Nac)
pdb|3MCE|C Chain C, Crystal Structure Of The Nac Domain Of Alpha Subunit Of
Nascent Polypeptide-Associated Complex(Nac)
pdb|3MCE|D Chain D, Crystal Structure Of The Nac Domain Of Alpha Subunit Of
Nascent Polypeptide-Associated Complex(Nac)
Length = 61
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 33/36 (91%)
Query: 72 MSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNP 107
SKLGL+Q+ GV+RVTIRKSKNILFVI KPDV+K+P
Sbjct: 8 FSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSP 43
>pdb|3LKX|B Chain B, Human Nac Dimerization Domain
Length = 54
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 30/32 (93%)
Query: 76 GLKQIQGVSRVTIRKSKNILFVINKPDVFKNP 107
GL+Q+ GV+RVTIRKSKNILFVI KPDV+K+P
Sbjct: 2 GLRQVTGVTRVTIRKSKNILFVITKPDVYKSP 33
>pdb|3FUO|A Chain A, The Crystal Structure Of Receptor Binding Domain Of
Botulinum Neurotoxin Serotype A
Length = 426
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 54 DLVSKAKQSR-----GEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINK 100
++V K K+ R + KI+S L + + +S+V + KSKN + NK
Sbjct: 313 NVVVKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNK 364
>pdb|2VU9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Binding Domain In Complex With Gt1b
pdb|2VUA|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Serotype A
Binding Domain
Length = 444
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 54 DLVSKAKQSR-----GEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINK 100
++V K K+ R + KI+S L + + +S+V + KSKN + NK
Sbjct: 330 NVVVKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNK 381
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 40 GDPLGSAGASGLANDLVSKAKQS-RGEKKARKIMSKLGLKQIQ-GVSRVTIRKSKNILFV 97
G+ LGS + +V K +Q G++ A K + K L + GVSR I + NIL
Sbjct: 17 GEELGSGQFA-----IVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILRE 71
Query: 98 INKP------DVFKN 106
I P D+F+N
Sbjct: 72 IRHPNIITLHDIFEN 86
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 54 DLVSKAKQSR-----GEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINK 100
++V K K+ R + KI+S L + + +S+V + KSKN + NK
Sbjct: 1182 NVVVKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNK 1233
>pdb|3V0A|A Chain A, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|A Chain A, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1296
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 54 DLVSKAKQSR-----GEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINK 100
++V K K+ R + KI+S L + + +S+V + KSKN + NK
Sbjct: 1183 NVVVKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNK 1234
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 40 GDPLGSAGASGLANDLVSKAKQS-RGEKKARKIMSKLGLKQIQ-GVSRVTIRKSKNILFV 97
G+ LGS + +V K +Q G++ A K + K L + GVSR I + NIL
Sbjct: 31 GEELGSGQFA-----IVRKCRQKGTGKEYAAKFIKKRRLXSSRRGVSREEIEREVNILRE 85
Query: 98 INKP------DVFKN 106
I P D+F+N
Sbjct: 86 IRHPNIITLHDIFEN 100
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 40 GDPLGSAGASGLANDLVSKAKQS-RGEKKARKIMSKLGLKQIQ-GVSRVTIRKSKNILFV 97
G+ LGS + +V K +Q G++ A K + K L + GVSR I + NIL
Sbjct: 10 GEELGSGQFA-----IVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILRE 64
Query: 98 INKP------DVFKN 106
I P D+F+N
Sbjct: 65 IRHPNIITLHDIFEN 79
>pdb|3V0C|A Chain A, 4.3 Angstrom Crystal Structure Of An Inactive BontA
(E224qR363AY366F)
Length = 1312
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 54 DLVSKAKQSR-----GEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINK 100
++V K K+ R + KI+S L + + +S+V + KSKN + NK
Sbjct: 1183 NVVVKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNK 1234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.131 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,029,174
Number of Sequences: 62578
Number of extensions: 93320
Number of successful extensions: 206
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 16
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)