Query psy18189
Match_columns 119
No_of_seqs 142 out of 203
Neff 3.3
Searched_HMMs 29240
Date Sat Aug 17 01:06:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mce_A Nascent polypeptide-ass 99.9 1.4E-25 4.8E-30 148.8 3.9 49 69-117 5-54 (61)
2 3mcb_A Nascent polypeptide-ass 99.9 7.6E-25 2.6E-29 142.0 5.3 47 71-117 1-48 (54)
3 1tr8_A Conserved protein (MTH1 99.6 1.5E-15 5.1E-20 108.1 4.2 46 70-116 2-52 (102)
4 3mcb_B Transcription factor BT 98.3 1.3E-06 4.5E-11 57.0 5.3 37 78-114 2-38 (58)
5 3lkx_A Transcription factor BT 98.2 2.7E-06 9.1E-11 56.8 5.7 37 78-114 2-38 (66)
6 1eej_A Thiol:disulfide interch 84.5 1.1 3.6E-05 32.7 4.0 44 66-119 3-53 (216)
7 1t3b_A Thiol:disulfide interch 71.7 2.6 8.9E-05 30.6 2.8 41 69-119 6-53 (211)
8 1v58_A Thiol:disulfide interch 51.7 43 0.0015 24.6 6.3 27 93-119 29-57 (241)
9 2oug_A Transcriptional activat 40.5 85 0.0029 21.8 6.1 19 61-79 10-28 (162)
10 4gwp_G Mediator of RNA polymer 38.1 9.1 0.00031 31.0 0.8 42 77-118 107-160 (295)
11 3h5t_A Transcriptional regulat 35.0 16 0.00055 27.4 1.7 56 45-100 15-77 (366)
12 3shp_A Putative acetyltransfer 31.5 88 0.003 20.8 4.8 37 66-103 131-171 (176)
13 1cw0_A Protein (DNA mismatch e 30.4 36 0.0012 25.1 2.9 40 58-97 17-62 (155)
14 3plv_C 66 kDa U4/U6.U5 small n 29.8 31 0.001 18.1 1.7 16 66-81 5-20 (21)
15 3dbi_A Sugar-binding transcrip 29.8 21 0.00073 26.3 1.6 36 65-100 35-70 (338)
16 3igr_A Ribosomal-protein-S5-al 29.8 89 0.003 19.7 4.4 36 66-102 142-181 (184)
17 3e3m_A Transcriptional regulat 28.6 24 0.00082 26.4 1.7 56 45-100 18-79 (355)
18 1yk3_A Hypothetical protein RV 27.6 65 0.0022 22.5 3.7 34 66-102 174-207 (210)
19 1s7k_A Acetyl transferase; GNA 23.7 1.4E+02 0.0047 18.6 4.6 22 66-88 142-163 (182)
20 1hh1_A Holliday junction resol 23.7 1E+02 0.0036 22.1 4.3 25 57-81 4-28 (143)
21 3eg7_A Spermidine N1-acetyltra 23.7 68 0.0023 20.1 3.0 22 66-87 131-152 (176)
22 1uc8_A LYSX, lysine biosynthes 22.8 1.5E+02 0.0053 20.8 5.0 32 63-98 217-248 (280)
23 1ob8_A Holliday-junction resol 22.8 1.1E+02 0.0037 21.9 4.2 22 59-80 4-25 (135)
24 2hiy_A Hypothetical protein; C 22.4 57 0.0019 24.1 2.7 35 58-99 19-53 (183)
25 3bil_A Probable LACI-family tr 21.8 34 0.0012 25.6 1.4 34 66-99 41-74 (348)
26 3r5x_A D-alanine--D-alanine li 21.7 1.6E+02 0.0054 21.5 5.0 33 63-98 230-262 (307)
27 3tth_A Spermidine N1-acetyltra 21.7 1.5E+02 0.0053 18.4 4.4 16 66-81 130-145 (170)
28 2o20_A Catabolite control prot 21.5 38 0.0013 25.0 1.6 34 66-99 38-71 (332)
29 3h5o_A Transcriptional regulat 20.5 39 0.0013 25.0 1.5 35 66-100 37-71 (339)
No 1
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=99.91 E-value=1.4e-25 Score=148.80 Aligned_cols=49 Identities=59% Similarity=0.866 Sum_probs=44.0
Q ss_pred HHHHHhcCCeeecCeeEEEEEecCcEEEEEcCCeeeeCCCCCcEE-Eeec
Q psy18189 69 RKIMSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNPPLSGSG-FKDI 117 (119)
Q Consensus 69 RKam~KLGLK~V~gI~RVtirKsknilFvI~~PdVyKsp~sdtyV-Fg~~ 117 (119)
||||+|||||+|+||+||||||++|++|+|++||||++|+||||| |||.
T Consensus 5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGea 54 (61)
T 3mce_A 5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEA 54 (61)
T ss_dssp SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCE
T ss_pred HHHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEccc
Confidence 689999999999999999999999999999999999999999888 9974
No 2
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=99.91 E-value=7.6e-25 Score=142.02 Aligned_cols=47 Identities=64% Similarity=0.941 Sum_probs=44.9
Q ss_pred HHHhcCCeeecCeeEEEEEecCcEEEEEcCCeeeeCCCCCcEE-Eeec
Q psy18189 71 IMSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNPPLSGSG-FKDI 117 (119)
Q Consensus 71 am~KLGLK~V~gI~RVtirKsknilFvI~~PdVyKsp~sdtyV-Fg~~ 117 (119)
||+|||||+|+||+||||||++|++|+|++||||++|+||||| |||.
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGea 48 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEA 48 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCE
T ss_pred CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcce
Confidence 6899999999999999999999999999999999999999888 9974
No 3
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=99.56 E-value=1.5e-15 Score=108.10 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=35.8
Q ss_pred HHHHhcCC--eeecCeeEEEEEecCcEEEEEcCCeeee--CCCCCcEE-Eee
Q psy18189 70 KIMSKLGL--KQIQGVSRVTIRKSKNILFVINKPDVFK--NPPLSGSG-FKD 116 (119)
Q Consensus 70 Kam~KLGL--K~V~gI~RVtirKsknilFvI~~PdVyK--sp~sdtyV-Fg~ 116 (119)
|+|.|||| ++++||.||+||+++ .+|+|++|+||+ +|+++||+ ||+
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge 52 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGK 52 (102)
T ss_dssp --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESC
T ss_pred chHHHcCCCceeCCCcEEEEEEeCC-EEEEECCCEEEEEcCCCCcEEEEEcC
Confidence 78999999 899999999999999 999999999995 89999887 886
No 4
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=98.27 E-value=1.3e-06 Score=57.00 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=34.9
Q ss_pred eeecCeeEEEEEecCcEEEEEcCCeeeeCCCCCcEEE
Q psy18189 78 KQIQGVSRVTIRKSKNILFVINKPDVFKNPPLSGSGF 114 (119)
Q Consensus 78 K~V~gI~RVtirKsknilFvI~~PdVyKsp~sdtyVF 114 (119)
..++||.+|.|.|.++.++.+++|.|+.|+.++|||+
T Consensus 2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv 38 (58)
T 3mcb_B 2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTI 38 (58)
T ss_dssp CEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEE
T ss_pred cccCCeeEEEEEecCCEEEEecCcceEEeeccceEEE
Confidence 4689999999999999999999999999999999984
No 5
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=98.20 E-value=2.7e-06 Score=56.78 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=33.9
Q ss_pred eeecCeeEEEEEecCcEEEEEcCCeeeeCCCCCcEEE
Q psy18189 78 KQIQGVSRVTIRKSKNILFVINKPDVFKNPPLSGSGF 114 (119)
Q Consensus 78 K~V~gI~RVtirKsknilFvI~~PdVyKsp~sdtyVF 114 (119)
..++||.+|.|.|.++.++.+++|.|+.|+.+|||||
T Consensus 2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv 38 (66)
T 3lkx_A 2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTI 38 (66)
T ss_dssp EECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEE
T ss_pred cccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEe
Confidence 4689999999999999999999999999999999984
No 6
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=84.45 E-value=1.1 Score=32.65 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCe-------eecCeeEEEEEecCcEEEEEcCCeeeeCCCCCcEEEeecCC
Q psy18189 66 KKARKIMSKLGLK-------QIQGVSRVTIRKSKNILFVINKPDVFKNPPLSGSGFKDILN 119 (119)
Q Consensus 66 KKARKam~KLGLK-------~V~gI~RVtirKsknilFvI~~PdVyKsp~sdtyVFg~~~~ 119 (119)
..-+++|.++|++ +++|+..|++ .+.-+|-++.+.++++|++++
T Consensus 3 ~~~~~~l~~~~~~v~~v~~~p~~Gl~~v~~----------~~~~~y~~~dg~~~i~G~l~d 53 (216)
T 1eej_A 3 AAIQQTLAKMGIKSSDIQPAPVAGMKTVLT----------NSGVLYITDDGKHIIQGPMYD 53 (216)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSTTEEEEEE----------TTEEEEEETTSCEEEESCEEE
T ss_pred HHHHHHHHHcCCceeeeecCCCCCcEEEEE----------CCeEEEEcCCCCEEEEeeeEe
Confidence 3456778888765 3445555554 233567778888999998763
No 7
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=71.74 E-value=2.6 Score=30.59 Aligned_cols=41 Identities=5% Similarity=0.096 Sum_probs=26.6
Q ss_pred HHHHHhcCCe-------eecCeeEEEEEecCcEEEEEcCCeeeeCCCCCcEEEeecCC
Q psy18189 69 RKIMSKLGLK-------QIQGVSRVTIRKSKNILFVINKPDVFKNPPLSGSGFKDILN 119 (119)
Q Consensus 69 RKam~KLGLK-------~V~gI~RVtirKsknilFvI~~PdVyKsp~sdtyVFg~~~~ 119 (119)
++.|.++|++ +++|+..|++ .+.-+|-++.+.++++|++++
T Consensus 6 ~~~l~~~~~~v~~v~~~~~~Gl~~v~~----------~~~~~y~~~dg~~~i~G~l~d 53 (211)
T 1t3b_A 6 KRKLQSFNISNIVIKSSPISGIKTAVT----------DQGILYVSEDGKYLFEGKLYE 53 (211)
T ss_dssp HHHHHTTTCCSCCCCBCSSTTEECCEE----------TTEECEEESSSSCEECSCCCC
T ss_pred HHHHHHcCCceeeeecCCCCCeEEEEE----------CCEEEEEcCCCCEEEEeeEEE
Confidence 5567777765 2334434433 344577788889999999874
No 8
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=51.66 E-value=43 Score=24.58 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=19.1
Q ss_pred cEEEEEcC-C-eeeeCCCCCcEEEeecCC
Q psy18189 93 NILFVINK-P-DVFKNPPLSGSGFKDILN 119 (119)
Q Consensus 93 nilFvI~~-P-dVyKsp~sdtyVFg~~~~ 119 (119)
+++.++.. . -+|-++.+.++++|++++
T Consensus 29 g~~~~~~~~~~i~y~~~dg~~~i~G~l~d 57 (241)
T 1v58_A 29 GYLGKYQDMGVTIYLTPDGKHAISGYMYN 57 (241)
T ss_dssp EEEEEETTEEEEEEECTTSSCEEESCCBC
T ss_pred EEEEEeCCCceEEEEeCCCCEEEEEEEEe
Confidence 44444533 3 578888899999999875
No 9
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=40.54 E-value=85 Score=21.78 Aligned_cols=19 Identities=5% Similarity=0.150 Sum_probs=16.1
Q ss_pred cChhHHHHHHHHHhcCCee
Q psy18189 61 QSRGEKKARKIMSKLGLKQ 79 (119)
Q Consensus 61 qSR~EKKARKam~KLGLK~ 79 (119)
.++.|+|+++.|.+.|+.-
T Consensus 10 ~~g~E~~v~~~L~~~~~e~ 28 (162)
T 2oug_A 10 KRGQLQRAQEHLERQAVNC 28 (162)
T ss_dssp CTTTHHHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHHhCCCEE
Confidence 3678999999999998764
No 10
>4gwp_G Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae S288C} PDB: 3rj1_G 4gwq_G
Probab=38.06 E-value=9.1 Score=31.01 Aligned_cols=42 Identities=17% Similarity=0.087 Sum_probs=28.3
Q ss_pred CeeecCeeEEEEEecCcEEEEEcCCeeee------------CCCCCcEEEeecC
Q psy18189 77 LKQIQGVSRVTIRKSKNILFVINKPDVFK------------NPPLSGSGFKDIL 118 (119)
Q Consensus 77 LK~V~gI~RVtirKsknilFvI~~PdVyK------------sp~sdtyVFg~~~ 118 (119)
|+.+.||.-|..-...-.||||.|=.-.+ .|-.+|||+|+.+
T Consensus 107 L~~m~GiEyvl~~~~eP~lwVIrKQ~R~s~~~~~~~~~~ev~pLa~YYIig~~I 160 (295)
T 4gwp_G 107 LMKLDGTEYVLSSVREPDFWVIRKQRRTNNSGVGSAKGPEIIPLQDYYIIGANI 160 (295)
T ss_dssp HHHHSCEEETTEEECSSEEEEEEETTEEEEEEEEECCCTTCCCEEEEEEEEETT
T ss_pred HhhCCCeEEEEeecCCCceEEEEeeeccCCcccccccCcceeEeEEEEEECCEE
Confidence 34577887777666666789998754332 2346899999753
No 11
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=35.03 E-value=16 Score=27.40 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=27.5
Q ss_pred ccccCCCCcccchhhccChh------HHHHHHHHHhcCCe-eecCeeEEEEEecCcEEEEEcC
Q psy18189 45 SAGASGLANDLVSKAKQSRG------EKKARKIMSKLGLK-QIQGVSRVTIRKSKNILFVINK 100 (119)
Q Consensus 45 ~~~~~~~~~~~~~~~KqSR~------EKKARKam~KLGLK-~V~gI~RVtirKsknilFvI~~ 100 (119)
.|..+|+....+++.-..+. -+|.++++.+||+. |-+-.....-++++.|-|++..
T Consensus 15 iA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn~~a~~l~~~~s~~Igvi~~~ 77 (366)
T 3h5t_A 15 IAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTE 77 (366)
T ss_dssp HHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC--------------CCEEEEEESS
T ss_pred HHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhhcCCCCEEEEEecC
Confidence 44455655555554433222 27888999999997 6554444444566677777754
No 12
>3shp_A Putative acetyltransferase STHE_0691; PSI-biology, midwest center for structural genomics, MCSG; HET: SRT; 2.21A {Sphaerobacter thermophilus}
Probab=31.52 E-value=88 Score=20.76 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCeeecCeeEEEEEecC----cEEEEEcCCee
Q psy18189 66 KKARKIMSKLGLKQIQGVSRVTIRKSK----NILFVINKPDV 103 (119)
Q Consensus 66 KKARKam~KLGLK~V~gI~RVtirKsk----nilFvI~~PdV 103 (119)
..|++++.|+|++.+ |+.|=.+...+ -++|.+-++|.
T Consensus 131 ~~s~~l~ek~GF~~~-G~~r~~~~~~g~~~D~~~~~ll~~e~ 171 (176)
T 3shp_A 131 QRTLAAAEAAGLKAA-VRMREAIARAGHRVDLLIYQAVDPKV 171 (176)
T ss_dssp HHHHHHHHHTTCEEE-EEEEEEEEETTEEEEEEEEEEECTTC
T ss_pred HHHHHHHHHCCCEEE-EEeeeeEEeCCEEEEEEEEEEcchhh
Confidence 578888999999854 66555444443 34566666553
No 13
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=30.37 E-value=36 Score=25.06 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=31.0
Q ss_pred hhccChhHHHHHHHHHhcCCe------eecCeeEEEEEecCcEEEE
Q psy18189 58 KAKQSRGEKKARKIMSKLGLK------QIQGVSRVTIRKSKNILFV 97 (119)
Q Consensus 58 ~~KqSR~EKKARKam~KLGLK------~V~gI~RVtirKsknilFv 97 (119)
+.+.++.|.+-|++|-.+|++ ..||+--+.+.+-+=++||
T Consensus 17 R~~~T~pE~~lr~~L~~~G~rfR~q~~~lpg~pDfv~~~~rlvIfV 62 (155)
T 1cw0_A 17 ATRDTAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFT 62 (155)
T ss_dssp CSSSCHHHHHHHHHHHHTTCCCEECCTTSTTCCSEEEGGGTEEEEE
T ss_pred hcCCCcHHHHHHHHHHHCCCeEEEeCCCCCCcccEEcccCCEEEEE
Confidence 456789999999999999985 2567777777777766665
No 14
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=29.80 E-value=31 Score=18.15 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCeeec
Q psy18189 66 KKARKIMSKLGLKQIQ 81 (119)
Q Consensus 66 KKARKam~KLGLK~V~ 81 (119)
.-+-++=.+||||++|
T Consensus 5 EEtnk~r~~lGLkplp 20 (21)
T 3plv_C 5 EETNELRASLGLKLIP 20 (26)
T ss_dssp HHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHcCCCCCC
Confidence 3455666789999986
No 15
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=29.79 E-value=21 Score=26.30 Aligned_cols=36 Identities=6% Similarity=0.191 Sum_probs=7.7
Q ss_pred HHHHHHHHHhcCCeeecCeeEEEEEecCcEEEEEcC
Q psy18189 65 EKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINK 100 (119)
Q Consensus 65 EKKARKam~KLGLK~V~gI~RVtirKsknilFvI~~ 100 (119)
-+|.++++.+||++|-+-.....-++++.|-|++..
T Consensus 35 r~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~ 70 (338)
T 3dbi_A 35 KDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTN 70 (338)
T ss_dssp -------------------------CCSEEEEEECT
T ss_pred HHHHHHHHHHHCCCcCHHHHHhhhCCCCEEEEEecC
Confidence 377889999999987655555555666777777754
No 16
>3igr_A Ribosomal-protein-S5-alanine N-acetyltransferase; fisch MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.00A {Vibrio fischeri} SCOP: d.108.1.0
Probab=29.76 E-value=89 Score=19.74 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCeeecCeeEEEEEecC----cEEEEEcCCe
Q psy18189 66 KKARKIMSKLGLKQIQGVSRVTIRKSK----NILFVINKPD 102 (119)
Q Consensus 66 KKARKam~KLGLK~V~gI~RVtirKsk----nilFvI~~Pd 102 (119)
..|+++..|+|++.+ |+.|-.+...+ .++|.+.++|
T Consensus 142 ~~a~~~y~k~GF~~~-g~~~~~~~~~g~~~d~~~~~~~~~e 181 (184)
T 3igr_A 142 EKSAKVLAALGFVKE-GEAKKYLYINGAWEDHILTSKINDD 181 (184)
T ss_dssp HHHHHHHHHTTCEEE-EEEEEEEEETTEEEEEEEEEEECTT
T ss_pred HHHHHHHHHcCCEee-eeehhhhhhCCeEEEEEeeeehHhh
Confidence 689999999999966 44443443332 2455555544
No 17
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=28.64 E-value=24 Score=26.38 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=5.7
Q ss_pred ccccCCCCcccchhhccCh------hHHHHHHHHHhcCCeeecCeeEEEEEecCcEEEEEcC
Q psy18189 45 SAGASGLANDLVSKAKQSR------GEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINK 100 (119)
Q Consensus 45 ~~~~~~~~~~~~~~~KqSR------~EKKARKam~KLGLK~V~gI~RVtirKsknilFvI~~ 100 (119)
+|..+|+....+++.-..+ -.+|.++++.+||+.|-+--....-++++.|-|++..
T Consensus 18 iA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~ 79 (355)
T 3e3m_A 18 VAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMNYVPDQVAGSLTTKRSGFVGLLLPS 79 (355)
T ss_dssp -----------------------------------------------------CEEEEEESC
T ss_pred HHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCC
Confidence 4455555554455443221 2467889999999986554444444556667777643
No 18
>1yk3_A Hypothetical protein RV1347C/MT1389; acyltransferase, GCN5-related fold, structural genomics, PSI, protein structure initiative; HET: BOG; 2.20A {Mycobacterium tuberculosis} SCOP: d.108.1.1
Probab=27.65 E-value=65 Score=22.47 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCeeecCeeEEEEEecCcEEEEEcCCe
Q psy18189 66 KKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINKPD 102 (119)
Q Consensus 66 KKARKam~KLGLK~V~gI~RVtirKsknilFvI~~Pd 102 (119)
..|++++.|+|++.+ |.. .+....-.+|.+.+|+
T Consensus 174 ~~A~~lyek~GF~~~-g~~--~~~~~~~~~~~l~r~~ 207 (210)
T 1yk3_A 174 TATRRLCEWAGCKFL-GEH--DTTNRRMALYALEAPT 207 (210)
T ss_dssp HHHHHHHHHHTCEEE-EEE--ECSSCEEEEEEEECCC
T ss_pred HHHHHHHHHcCCEEe-EEE--eCCCCeEEEEEecccc
Confidence 679999999999865 322 2222223555555554
No 19
>1s7k_A Acetyl transferase; GNAT; 1.80A {Salmonella typhimurium} SCOP: d.108.1.1 PDB: 1s7l_A* 1s7n_A* 1s7f_A 1z9u_A
Probab=23.72 E-value=1.4e+02 Score=18.60 Aligned_cols=22 Identities=5% Similarity=0.074 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCeeecCeeEEEE
Q psy18189 66 KKARKIMSKLGLKQIQGVSRVTI 88 (119)
Q Consensus 66 KKARKam~KLGLK~V~gI~RVti 88 (119)
..|+++..|+|++.+ |..+-.+
T Consensus 142 ~~a~~~y~k~Gf~~~-~~~~~~~ 163 (182)
T 1s7k_A 142 QASNAVARRNHFTLE-GCMKQAE 163 (182)
T ss_dssp HHHHHHHHHTTCEEE-EEEEEEE
T ss_pred HHHHHHHHHCCCEEE-eeeeeee
Confidence 568899999999876 4444433
No 20
>1hh1_A Holliday junction resolving enzyme HJC; holliday junction resolvase, homologous recombination, nuclease domain, archaea; 2.15A {Sulfolobus solfataricus} SCOP: c.52.1.18
Probab=23.71 E-value=1e+02 Score=22.11 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=18.3
Q ss_pred hhhccChhHHHHHHHHHhcCCeeec
Q psy18189 57 SKAKQSRGEKKARKIMSKLGLKQIQ 81 (119)
Q Consensus 57 ~~~KqSR~EKKARKam~KLGLK~V~ 81 (119)
++.+-+++|..|.+.|.+.|+.-+.
T Consensus 4 ~~~~G~~~E~~a~~~L~~~G~~ilr 28 (143)
T 1hh1_A 4 KKRKGSAVERNIVSRLRDKGFAVVR 28 (143)
T ss_dssp -----CHHHHHHHHHHHHTTCEEEE
T ss_pred hhHhHHHHHHHHHHHHHHCCCEEEE
Confidence 3456689999999999999998774
No 21
>3eg7_A Spermidine N1-acetyltransferase; structural genomics, IDP016 transferase, center for structural genomics of infectious D csgid; HET: MSE; 2.38A {Vibrio cholerae} SCOP: d.108.1.0
Probab=23.71 E-value=68 Score=20.14 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCeeecCeeEEE
Q psy18189 66 KKARKIMSKLGLKQIQGVSRVT 87 (119)
Q Consensus 66 KKARKam~KLGLK~V~gI~RVt 87 (119)
..|++...|+|++.+.-+....
T Consensus 131 ~~a~~~y~k~GF~~~~~~~~~~ 152 (176)
T 3eg7_A 131 PKAVHLYEECGFVEEGHLVEEF 152 (176)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHHHHHHCCCEEeeeehhhh
Confidence 5789999999999764443333
No 22
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=22.81 E-value=1.5e+02 Score=20.78 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHhcCCeeecCeeEEEEEecCcEEEEE
Q psy18189 63 RGEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVI 98 (119)
Q Consensus 63 R~EKKARKam~KLGLK~V~gI~RVtirKsknilFvI 98 (119)
+-..-+++++..||+ |+.+|-|....+-+++|
T Consensus 217 ~~~~~~~~~~~~lg~----g~~~vD~~~~~~g~~~i 248 (280)
T 1uc8_A 217 EVARLSVKAAEAVGG----GVVAVDLFESERGLLVN 248 (280)
T ss_dssp HHHHHHHHHHHHTTC----SEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhCC----CeEEEEEEEeCCCeEEE
Confidence 567889999999998 78899888765434444
No 23
>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous recombination, holliday junction resolving enzyme, nuclease, archaea; 1.8A {Sulfolobus solfataricus} SCOP: c.52.1.18 PDB: 1ob9_A
Probab=22.77 E-value=1.1e+02 Score=21.93 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=18.2
Q ss_pred hccChhHHHHHHHHHhcCCeee
Q psy18189 59 AKQSRGEKKARKIMSKLGLKQI 80 (119)
Q Consensus 59 ~KqSR~EKKARKam~KLGLK~V 80 (119)
.+-+++|..|.+-|.+.|+.-+
T Consensus 4 ~~G~~~E~~A~~~L~~~G~~il 25 (135)
T 1ob8_A 4 DIGKNAERELVSILRGEGFNAV 25 (135)
T ss_dssp --CHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHHHHHCCCEEE
Confidence 3446889999999999999988
No 24
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=22.35 E-value=57 Score=24.05 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=25.0
Q ss_pred hhccChhHHHHHHHHHhcCCeeecCeeEEEEEecCcEEEEEc
Q psy18189 58 KAKQSRGEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVIN 99 (119)
Q Consensus 58 ~~KqSR~EKKARKam~KLGLK~V~gI~RVtirKsknilFvI~ 99 (119)
+.|..- .-=|.++..||+..| -|.=.|+|++|--.
T Consensus 19 ~nkv~M--adLr~~l~~lGf~~V-----~TyI~SGNvvF~s~ 53 (183)
T 2hiy_A 19 KNKVVM--AELRQELTNLGLEKV-----ESYINSGNIFFTSI 53 (183)
T ss_dssp CCCCCH--HHHHHHHHHHTCEEE-----EEETTTTEEEEEEC
T ss_pred CCcccH--HHHHHHHHHcCCccc-----eEEEecCCEEEecC
Confidence 344443 446789999999987 46667999998543
No 25
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=21.79 E-value=34 Score=25.61 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=4.6
Q ss_pred HHHHHHHHhcCCeeecCeeEEEEEecCcEEEEEc
Q psy18189 66 KKARKIMSKLGLKQIQGVSRVTIRKSKNILFVIN 99 (119)
Q Consensus 66 KKARKam~KLGLK~V~gI~RVtirKsknilFvI~ 99 (119)
+|.++++.+||+.|-.--....-++++.|-|++.
T Consensus 41 ~rV~~aa~~lgY~pn~~ar~l~~~~s~~Igvi~~ 74 (348)
T 3bil_A 41 ERIQQLASDLGYRANAQARALRSSRSNTIGVIVP 74 (348)
T ss_dssp ---------------------------CEEEEES
T ss_pred HHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeC
Confidence 6778899999997644333333345666777763
No 26
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=21.75 E-value=1.6e+02 Score=21.48 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhcCCeeecCeeEEEEEecCcEEEEE
Q psy18189 63 RGEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVI 98 (119)
Q Consensus 63 R~EKKARKam~KLGLK~V~gI~RVtirKsknilFvI 98 (119)
+-+.-|++++..||+. |+.+|-|+...+-+++|
T Consensus 230 ~i~~~a~~~~~~lg~~---G~~~vD~~~~~g~~~vl 262 (307)
T 3r5x_A 230 RVNKASLACYKALKCS---VYARVDMMVKDGIPYVM 262 (307)
T ss_dssp HHHHHHHHHHHHTTCC---SEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhCCC---ceEEEEEEEECCeEEEE
Confidence 3467889999999986 89999888766655555
No 27
>3tth_A Spermidine N1-acetyltransferase; central intermediary metabolism; 3.30A {Coxiella burnetii}
Probab=21.68 E-value=1.5e+02 Score=18.37 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCeeec
Q psy18189 66 KKARKIMSKLGLKQIQ 81 (119)
Q Consensus 66 KKARKam~KLGLK~V~ 81 (119)
..|+++..|+|++.+.
T Consensus 130 ~~a~~~y~k~GF~~~g 145 (170)
T 3tth_A 130 PAALHIYRKSGFAEEG 145 (170)
T ss_dssp HHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHCCCeEEE
Confidence 5799999999999664
No 28
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=21.50 E-value=38 Score=24.96 Aligned_cols=34 Identities=6% Similarity=0.187 Sum_probs=6.2
Q ss_pred HHHHHHHHhcCCeeecCeeEEEEEecCcEEEEEc
Q psy18189 66 KKARKIMSKLGLKQIQGVSRVTIRKSKNILFVIN 99 (119)
Q Consensus 66 KKARKam~KLGLK~V~gI~RVtirKsknilFvI~ 99 (119)
+|.++++.+||+.|-.--....-++++.|-|++.
T Consensus 38 ~rV~~~a~~lgY~pn~~ar~l~~~~~~~Ig~i~~ 71 (332)
T 2o20_A 38 QKVLEAIAELDYRPNAVARGLASKRTTTVGVILP 71 (332)
T ss_dssp ------------------------CCCEEEEEES
T ss_pred HHHHHHHHHHCCCcCHHHHHHhcCCCCEEEEEeC
Confidence 5777899999997644333333345566666663
No 29
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=20.54 E-value=39 Score=24.96 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=5.9
Q ss_pred HHHHHHHHhcCCeeecCeeEEEEEecCcEEEEEcC
Q psy18189 66 KKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINK 100 (119)
Q Consensus 66 KKARKam~KLGLK~V~gI~RVtirKsknilFvI~~ 100 (119)
+|.++++.+||+.|-+-.....-++++.|-|++..
T Consensus 37 ~rV~~~~~~lgY~pn~~a~~l~~~~~~~Igvi~~~ 71 (339)
T 3h5o_A 37 EKVMQAVDALAYVPSRSASTLASAKSRTVLVLIPS 71 (339)
T ss_dssp --------------------------CEEEEEESC
T ss_pred HHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCC
Confidence 67889999999987655444445566677777643
Done!