RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy18189
         (119 letters)



>gnl|CDD|202009 pfam01849, NAC, NAC domain. 
          Length = 50

 Score = 53.7 bits (130), Expect = 4e-11
 Identities = 19/36 (52%), Positives = 22/36 (61%)

Query: 73  SKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNPP 108
            KLGLK I+GV  VTIRK    + V N P V K+P 
Sbjct: 1   KKLGLKPIEGVEEVTIRKKDGKVLVFNNPKVQKSPG 36


>gnl|CDD|224227 COG1308, EGD2, Transcription factor homologous to NACalpha-BTF3
           [Transcription].
          Length = 122

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 66  KKARKIMSKLG--LKQIQGVSRVTIRKSKNILFVINKPDVFK 105
           +K +K+M ++G  ++++ GV RV I+       VI  P V  
Sbjct: 9   RKLKKLMKQMGIDVEELDGVERVIIKLKDTEY-VIENPQVTV 49


>gnl|CDD|222019 pfam13276, HTH_21, HTH-like domain.  This domain contains a
          predicted helix-turn-helix suggesting a DNA-binding
          function.
          Length = 60

 Score = 25.9 bits (58), Expect = 1.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 64 GEKKARKIMSKLGLKQIQ 81
            K+ R++M +LGL+   
Sbjct: 39 NRKRVRRLMRELGLRSRI 56


>gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and
           modification].
          Length = 975

 Score = 27.2 bits (60), Expect = 2.4
 Identities = 15/73 (20%), Positives = 32/73 (43%)

Query: 47  GASGLANDLVSKAKQSRGEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKN 106
           GA+ + N ++        E + R ++ KL  + + G+  + +     IL V+    + ++
Sbjct: 200 GAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLIDED 259

Query: 107 PPLSGSGFKDILN 119
                 G + ILN
Sbjct: 260 LKRRCMGREIILN 272


>gnl|CDD|225099 COG2188, PhnF, Transcriptional regulators [Transcription].
          Length = 236

 Score = 26.5 bits (59), Expect = 3.4
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 16/56 (28%)

Query: 77  LKQIQGVSRVTIRKSKNIL--------------FVINKPDVFKNPPLSGSGFKDIL 118
           L +  GVSR+T+RK+ + L              FV +  +    P L  + F + L
Sbjct: 37  LAEQFGVSRMTVRKALDELVEEGLIVRRQGKGTFVASPKEQS--PLLELTSFSEEL 90


>gnl|CDD|239323 cd03025, DsbA_FrnE_like, DsbA family, FrnE-like subfamily; composed
           of uncharacterized proteins containing a CXXC motif with
           similarity to DsbA and FrnE. FrnE is presumed to be a
           thiol oxidoreductase involved in polyketide
           biosynthesis, specifically in the production of the
           aromatic antibiotics frenolicin and nanaomycins.
          Length = 193

 Score = 26.1 bits (58), Expect = 4.6
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 39  SGDPLGSAGASGLANDLVSKAKQSRGEKKARKIMSKLGLKQIQGVSRVTIRKSKNILFVI 98
           +G P G      L  DL   A  SR  K AR    +  L+ ++ + R    + ++    +
Sbjct: 68  TGQPFGEDYLELLLFDL-DSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRD----L 122

Query: 99  NKPDVFKN 106
              +V + 
Sbjct: 123 ADTEVLRE 130


>gnl|CDD|233822 TIGR02329, propionate_PrpR, propionate catabolism operon regulatory
           protein PrpR.  At least five distinct pathways exists
           for the catabolism of propionate by way of
           propionyl-CoA. Members of this family represent the
           transcriptional regulatory protein PrpR, whose gene is
           found in most cases divergently transcribed from an
           operon for the methylcitric acid cycle of propionate
           catabolism. 2-methylcitric acid, a catabolite by this
           pathway, is a coactivator of PrpR.
          Length = 526

 Score = 25.6 bits (56), Expect = 8.4
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 25  TESDSEDSIPELEASGDPLGSAGASGLANDLVSKA 59
           TE D+   + +L A G  +G+   +GL  DL  +A
Sbjct: 130 TEEDARSCVNDLRARG--IGAVVGAGLITDLAEQA 162


>gnl|CDD|179341 PRK01839, PRK01839, Maf-like protein; Reviewed.
          Length = 209

 Score = 25.1 bits (55), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 29  SEDSIPELEASGDPLGSAGASGL 51
           + D+I    ASG+P G AGA  +
Sbjct: 150 TRDAIARYVASGEPFGKAGAYAI 172


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.306    0.128    0.341 

Gapped
Lambda     K      H
   0.267   0.0824    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,806,723
Number of extensions: 488469
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 32
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (24.0 bits)