RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18189
(119 letters)
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like
structure, NAC, homodimer, chaperone; 2.40A {Homo
sapiens}
Length = 61
Score = 65.6 bits (160), Expect = 6e-16
Identities = 28/36 (77%), Positives = 33/36 (91%)
Query: 72 MSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNP 107
SKLGL+Q+ GV+RVTIRKSKNILFVI KPDV+K+P
Sbjct: 8 FSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSP 43
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like
structure, NAC, heterodimer, chaperone; 1.90A {Homo
sapiens} PDB: 3lkx_B
Length = 54
Score = 64.4 bits (157), Expect = 1e-15
Identities = 29/36 (80%), Positives = 34/36 (94%)
Query: 72 MSKLGLKQIQGVSRVTIRKSKNILFVINKPDVFKNP 107
MSKLGL+Q+ GV+RVTIRKSKNILFVI KPDV+K+P
Sbjct: 2 MSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSP 37
>1tr8_A Conserved protein (MTH177); chaperones, nascent
polypeptide-associated complex, ribosome domain,
ubiquitin, chaperone; 2.27A {Methanothermobacter
marburgensis}
Length = 102
Score = 38.8 bits (90), Expect = 4e-05
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 72 MSKLGLK--QIQGVSRVTIR-KSKNILFVINKPDVFKNP 107
M ++G+ ++GV V I+ K K I+ K +V +
Sbjct: 4 MKQMGMDMKDLRGVEEVVIKLKRKEIIIKNPKVNVMEFM 42
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology
GPCR network, structural genomics, GPCR membrane 7TM
NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A
{Homo sapiens}
Length = 434
Score = 25.9 bits (57), Expect = 3.5
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 21 DDSGTESDSEDSIPELEASGDPLGSAGASGLANDLVSKAKQS 62
DD G +D ED+ L + + A + D ++K + +
Sbjct: 5 DDDGAPADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAA 46
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like
fold, helix-turn-helix, transcription/DNA complex; 2.65A
{Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A
2phg_A 1vol_A*
Length = 207
Score = 25.8 bits (56), Expect = 3.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 42 PLGSAGASGLANDLVSKAKQSRGEKKARKIMSKLGLKQIQGVSRVTIRKSKNIL 95
P+ A A+ + A Q+ EK+ ++ + I GV+ VTIR+S ++
Sbjct: 141 PISVAAAA------IYMASQASAEKR-----TQKEIGDIAGVADVTIRQSYRLI 183
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486,
YYDK, transcriptional regulator, structural genomi 2;
2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Length = 239
Score = 25.3 bits (56), Expect = 5.0
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 82 GVSRVTIRK 90
VS+ TI K
Sbjct: 40 EVSKSTITK 48
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding,
transcription regulation, transcriptional regulator,
GNTR/HUTC family; 2.40A {Bacillus subtilis}
Length = 243
Score = 25.3 bits (56), Expect = 5.1
Identities = 5/9 (55%), Positives = 9/9 (100%)
Query: 82 GVSRVTIRK 90
G+SR+T+R+
Sbjct: 45 GISRMTVRQ 53
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 5.2
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 30 EDSIPELEASGDPLGSAGASGLA 52
+ ++ +L+AS A LA
Sbjct: 19 KQALKKLQASLKLYADDSAPALA 41
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural
GE PSI-2, protein structure initiative, midwest center
for STR genomics, MCSG; 2.09A {Listeria innocua}
Length = 236
Score = 25.3 bits (56), Expect = 5.8
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 82 GVSRVTIRK 90
SR TIR+
Sbjct: 44 SSSRTTIRR 52
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain,
structural genomics, PSI-2, protein structure
initiative; HET: SRT; 2.40A {Streptomyces coelicolor
A3} SCOP: d.190.1.2
Length = 247
Score = 24.9 bits (55), Expect = 6.5
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 82 GVSRVTIRK 90
G+SR T+R+
Sbjct: 51 GLSRPTVRQ 59
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged
helix-TUR UTRA, DNA-binding, transcription regulation;
1.80A {Mycobacterium smegmatis}
Length = 248
Score = 24.9 bits (55), Expect = 7.3
Identities = 4/9 (44%), Positives = 7/9 (77%)
Query: 82 GVSRVTIRK 90
V+R T+R+
Sbjct: 47 EVARETVRQ 55
>3eet_A Putative GNTR-family transcriptional regulator; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Streptomyces avermitilis}
Length = 272
Score = 24.7 bits (54), Expect = 9.8
Identities = 3/9 (33%), Positives = 4/9 (44%)
Query: 82 GVSRVTIRK 90
GVS +
Sbjct: 64 GVSDTVALE 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.128 0.341
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,656,826
Number of extensions: 87418
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 17
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.6 bits)