RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18189
         (119 letters)



>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase
           PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 249

 Score = 24.4 bits (52), Expect = 4.5
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 76  GLKQIQGVSRVTIRKSKNILFVINKPDVFKN 106
           G K +     +TI KS+           F+N
Sbjct: 210 GQKSVDFDGEITIEKSEFPAVFFKNEKRFRN 240


>d1oqka_ b.137.1.1 (A:) Hypothetical protein MTH11 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 78

 Score = 22.8 bits (49), Expect = 7.4
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 78  KQIQGVSRVTIRKSKNILFVINKPDVFKNPPLSGSGFK 115
           + IQG+S   + +++N L +          P   + F 
Sbjct: 17  RDIQGISGRVVDETRNTLRIEMDDGREITVPKGIAVFH 54


>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
          transferase subunit alpha, AccA {Escherichia coli
          [TaxId: 562]}
          Length = 316

 Score = 23.5 bits (50), Expect = 9.2
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 28 DSEDSIPELEASGDPLGSAGASGLANDLVSKAK----QSRGEKKARKIMSKLGLKQIQGV 83
          D E  I ELEA  D L +        D+    +    + +  +  RKI + LG  QI  +
Sbjct: 4  DFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQL 63

Query: 84 SR 85
          +R
Sbjct: 64 AR 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.128    0.341 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 386,124
Number of extensions: 15308
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 7
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (22.4 bits)