BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1819
         (141 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 11/137 (8%)

Query: 1   MVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGCF------ILASLVSLFF 54
           +V VR Q   +    +R  Y+  ++    + +EEG + L+ G         + +   L  
Sbjct: 127 VVKVRFQAQARAGGGRR--YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184

Query: 55  YLISQVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATPGQFNSM- 113
           Y +  +K  LL      D+   HF S+  AG   T +  P+DV+KTR MN+  GQ++S  
Sbjct: 185 YDL--IKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAG 242

Query: 114 WALVTYTAKLGPAGFFK 130
              +T   K GP  F+K
Sbjct: 243 HCALTMLRKEGPRAFYK 259



 Score = 32.3 bits (72), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 19  NYKHAIDGMIRVYKEEGFKRLYAGCFILASLVSLFFYLISQVKLGLL-STPYFEDNATTH 77
            Y+  +  ++ + + EG + LY G  ++A L     +  + V++GL  S   F    + H
Sbjct: 46  QYRGVLGTILTMVRTEGPRSLYNG--LVAGLQRQMSF--ASVRIGLYDSVKQFYTKGSEH 101

Query: 78  ------FLSSLTAGAIATTMTQPLDVLKTR 101
                  L+  T GA+A  + QP DV+K R
Sbjct: 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVR 131


>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 30.4 bits (67), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 18  RNYKHAIDGMIRVYKEEGFKRLYAGCFILASLVSLF------FYLISQVKLGLLSTPYFE 71
           + YK  ID ++R+ KE+GF   + G   LA+++  F      F    + K   L      
Sbjct: 48  KQYKGIIDCVVRIPKEQGFLSFWRGN--LANVIRYFPTQALNFAFKDKYKQIFLGGVDRH 105

Query: 72  DNATTHFLSSL----TAGAIATTMTQPLDVLKTR 101
                +F  +L     AGA +     PLD  +TR
Sbjct: 106 KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR 139


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,797,369
Number of Sequences: 62578
Number of extensions: 125164
Number of successful extensions: 308
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 4
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)