Query psy1819
Match_columns 141
No_of_seqs 110 out of 1198
Neff 9.5
Searched_HMMs 29240
Date Sat Aug 17 01:08:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.8E-31 6.1E-36 195.4 8.9 135 1-139 127-268 (303)
2 1okc_A ADP, ATP carrier protei 100.0 4.1E-30 1.4E-34 187.5 9.6 134 1-139 135-280 (297)
3 2lck_A Mitochondrial uncouplin 100.0 3.3E-29 1.1E-33 183.4 9.2 136 1-139 24-174 (303)
4 1okc_A ADP, ATP carrier protei 100.0 4.9E-29 1.7E-33 181.9 9.7 137 1-139 30-183 (297)
5 2acm_A Mucin-1; auto-catalytic 55.5 1.5 5.1E-05 23.7 -0.9 20 21-40 40-59 (66)
6 3f2e_A SIRV coat protein; four 35.9 26 0.00089 19.9 2.2 34 18-51 6-43 (100)
7 3i71_A Ethanolamine utilizatio 16.0 64 0.0022 17.2 1.2 25 80-104 17-41 (68)
8 2lor_A Transmembrane protein 1 20.0 33 0.0011 20.6 0.0 15 37-51 29-43 (108)
9 2wj8_A Nucleoprotein; RNA bind 15.0 89 0.0031 22.7 2.1 28 109-136 316-344 (391)
10 3vjj_A P9-1; 3.00A {Rice black 14.7 1.4E+02 0.0048 21.4 3.0 34 87-125 274-308 (368)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.97 E-value=1.8e-31 Score=195.37 Aligned_cols=135 Identities=28% Similarity=0.398 Sum_probs=120.8
Q ss_pred CeeeeeecCCCCCCccCCCCCcHHHHHHHHHHhhchhhhhccchHHHHHHH------HHHhhHHHHHHHhhcCCCCCCch
Q psy1819 1 MVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGCFILASLVS------LFFYLISQVKLGLLSTPYFEDNA 74 (141)
Q Consensus 1 ~iktrlq~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~------~~~y~~~~~~~~~~~~~~~~~~~ 74 (141)
+||+|||++... .....|+++++++++|+++||++|||||+.+++++++ |..| |.+++.+.+....+++.
T Consensus 127 ~vktrlq~~~~~--~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~y--e~~k~~l~~~~~~~~~~ 202 (303)
T 2lck_A 127 VVKVRFQAQARA--GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTY--DLIKDTLLKANLMTDDL 202 (303)
T ss_dssp HHHHHHHHSCSC--CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTTTTTTSCCSCH
T ss_pred HHHHHHhccccc--CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHH--HHHHHHHHhccCCCCch
Confidence 479999998642 2345799999999999999999999999999999987 8899 99999887655445677
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHhcCCCCCCcHHHHHHHHHHh-Cccccccccccccccc
Q psy1819 75 TTHFLSSLTAGAIATTMTQPLDVLKTRAMNATPGQFNSMWALVTYTAKL-GPAGFFKLGDLESSTS 139 (141)
Q Consensus 75 ~~~~~~g~~ag~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~i~~~-G~~gly~G~~~~~~~~ 139 (141)
...+++|++||++++++++|+|+||+|||.+....|.++++|+++|+++ |++|||||+.|++.|.
T Consensus 203 ~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~ 268 (303)
T 2lck_A 203 PCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRL 268 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHH
Confidence 8899999999999999999999999999998777899999999999999 9999999999998764
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.96 E-value=4.1e-30 Score=187.54 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=116.1
Q ss_pred CeeeeeecCCCCCCccCCCCCcHHHHHHHHHHhhchhhhhccchHHHHHHH------HHHhhHHHHHHHhhcCCCCCCch
Q psy1819 1 MVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGCFILASLVS------LFFYLISQVKLGLLSTPYFEDNA 74 (141)
Q Consensus 1 ~iktrlq~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~------~~~y~~~~~~~~~~~~~~~~~~~ 74 (141)
+||+|||++... ......|+++++++++|+++||++|||||+.+++++++ |..| |.+++.+.+. ...+.
T Consensus 135 ~vktrlq~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~y--e~~k~~~~~~--~~~~~ 209 (297)
T 1okc_A 135 FARTRLAADVGK-GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVY--DTAKGMLPDP--KNVHI 209 (297)
T ss_dssp HHHHHHHHCCCS-STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHH--HHHHHSSCGG--GCSCH
T ss_pred HHHHHHhccccC-CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHH--HHHHHHhccC--CCccH
Confidence 489999998532 22345789999999999999999999999999999988 8889 9999876433 24567
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHhcCC-----CCCCcHHHHHHHHHHh-Cccccccccccccccc
Q psy1819 75 TTHFLSSLTAGAIATTMTQPLDVLKTRAMNATP-----GQFNSMWALVTYTAKL-GPAGFFKLGDLESSTS 139 (141)
Q Consensus 75 ~~~~~~g~~ag~~~~~~~~P~d~vk~r~q~~~~-----~~~~~~~~~~~~i~~~-G~~gly~G~~~~~~~~ 139 (141)
...+++|++||++++++++|+|+||+|||.+.. ..|.+.++|+++|+++ |++|||||+.|++.|+
T Consensus 210 ~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~ 280 (297)
T 1okc_A 210 IVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG 280 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh
Confidence 888999999999999999999999999998753 3689999999999999 9999999999998763
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.96 E-value=3.3e-29 Score=183.36 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=118.3
Q ss_pred CeeeeeecCCCCCC----ccCCCCCcHHHHHHHHHHhhchhhhhccchHHHHHHH------HHHhhHHHHHHHhhcCCCC
Q psy1819 1 MVNVRMQNDVKLPP----EQRRNYKHAIDGMIRVYKEEGFKRLYAGCFILASLVS------LFFYLISQVKLGLLSTPYF 70 (141)
Q Consensus 1 ~iktrlq~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~------~~~y~~~~~~~~~~~~~~~ 70 (141)
+||+|||++..... .....|+++++++++|+++||++|||||+.+++++.+ |..| |.+++.+.+...
T Consensus 24 ~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~y--e~~k~~~~~~~~- 100 (303)
T 2lck_A 24 TAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLY--DSVKQFYTKGSE- 100 (303)
T ss_dssp HHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHH--HHHHHHHSCCCS-
T ss_pred HHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCc-
Confidence 47999999865321 1235799999999999999999999999999999988 7888 999998866532
Q ss_pred CCchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcCC----CCCCcHHHHHHHHHHh-Cccccccccccccccc
Q psy1819 71 EDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATP----GQFNSMWALVTYTAKL-GPAGFFKLGDLESSTS 139 (141)
Q Consensus 71 ~~~~~~~~~~g~~ag~~~~~~~~P~d~vk~r~q~~~~----~~~~~~~~~~~~i~~~-G~~gly~G~~~~~~~~ 139 (141)
..+....+++|++||++++++++|+|+||+|+|.+.. .+|.++++++++|+++ |++|||||+.|++.+.
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~ 174 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARN 174 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHH
Confidence 4678889999999999999999999999999999863 3689999999999999 9999999999988764
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.96 E-value=4.9e-29 Score=181.86 Aligned_cols=137 Identities=21% Similarity=0.227 Sum_probs=115.3
Q ss_pred CeeeeeecCCCCC-CccCCCCCcHHHHHHHHHHhhchhhhhccchHHHHHHH------HHHhhHHHHHHHhhcCCCCC--
Q psy1819 1 MVNVRMQNDVKLP-PEQRRNYKHAIDGMIRVYKEEGFKRLYAGCFILASLVS------LFFYLISQVKLGLLSTPYFE-- 71 (141)
Q Consensus 1 ~iktrlq~~~~~~-~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~------~~~y~~~~~~~~~~~~~~~~-- 71 (141)
+||||||++.... ......|+++++++++|+++||++|||||+.+++++++ |..| |.+++.+.......
T Consensus 30 ~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~y--e~~k~~~~~~~~~~~~ 107 (297)
T 1okc_A 30 RVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFK--DKYKQIFLGGVDRHKQ 107 (297)
T ss_dssp HHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHH--HHHHHHHHTTCCTTTC
T ss_pred HHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHH--HHHHHHhccccCcccc
Confidence 4799999986421 12345799999999999999999999999999999988 7889 99998654332222
Q ss_pred --CchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcCC-----CCCCcHHHHHHHHHHh-Cccccccccccccccc
Q psy1819 72 --DNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATP-----GQFNSMWALVTYTAKL-GPAGFFKLGDLESSTS 139 (141)
Q Consensus 72 --~~~~~~~~~g~~ag~~~~~~~~P~d~vk~r~q~~~~-----~~~~~~~~~~~~i~~~-G~~gly~G~~~~~~~~ 139 (141)
.+....+++|++||++++++++|+|+||+|||.+.. .+|.++++++++|+++ |++|||||+.|++.+.
T Consensus 108 ~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~ 183 (297)
T 1okc_A 108 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHH
Confidence 235678999999999999999999999999999752 4689999999999999 9999999999988764
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=55.51 E-value=1.5 Score=23.66 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=17.5
Q ss_pred CcHHHHHHHHHHhhchhhhh
Q psy1819 21 KHAIDGMIRVYKEEGFKRLY 40 (141)
Q Consensus 21 ~~~~~~~~~i~~~~G~~gly 40 (141)
+++++.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 57889999999999998875
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=35.94 E-value=26 Score=19.89 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=23.9
Q ss_pred CCCCcHHHHHHHHHHhhchhh----hhccchHHHHHHH
Q psy1819 18 RNYKHAIDGMIRVYKEEGFKR----LYAGCFILASLVS 51 (141)
Q Consensus 18 ~~~~~~~~~~~~i~~~~G~~g----ly~G~~~~l~~~~ 51 (141)
+++.++-+-...++.+-|+.| +|+|+...+.+..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 467777777888888888744 7888887766655
No 7
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=15.99 E-value=64 Score=17.20 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHh
Q psy1819 80 SSLTAGAIATTMTQPLDVLKTRAMN 104 (141)
Q Consensus 80 ~g~~ag~~~~~~~~P~d~vk~r~q~ 104 (141)
-|+.+|=+++-+-.|+|..|..+..
T Consensus 17 QGMTaGEVAA~f~w~Le~ar~aLeq 41 (68)
T 3i71_A 17 QGMTAGEVAAHFGWPLEKARNALEQ 41 (68)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccccHHHHHHHhCCcHHHHHHHHHH
Confidence 3577888888999999999987654
No 8
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=20.00 E-value=33 Score=20.57 Aligned_cols=15 Identities=13% Similarity=0.312 Sum_probs=12.1
Q ss_pred hhhhccchHHHHHHH
Q psy1819 37 KRLYAGCFILASLVS 51 (141)
Q Consensus 37 ~gly~G~~~~l~~~~ 51 (141)
+.|++|+...+++..
T Consensus 29 ~Af~~Gl~tF~lG~~ 43 (108)
T 2lor_A 29 HAFMKGVFTFVTGTG 43 (108)
Confidence 578899888888776
No 9
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=14.99 E-value=89 Score=22.68 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHHHHh-Ccccccccccccc
Q psy1819 109 QFNSMWALVTYTAKL-GPAGFFKLGDLES 136 (141)
Q Consensus 109 ~~~~~~~~~~~i~~~-G~~gly~G~~~~~ 136 (141)
.++++...+.--..- |+-|.|||-.|+.
T Consensus 316 ncPnFaSVVLGNAaGLGIiG~YrG~~~N~ 344 (391)
T 2wj8_A 316 QFPHFSSVVLGNAAGLGIMGEYRGTPRNQ 344 (391)
T ss_dssp TCHHHHHHHHHHHHHTTCCSSCCCCCSCH
T ss_pred cCCCchhheeccccccceeeeccCCCCCh
Confidence 467777777777777 9999999998863
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=14.68 E-value=1.4e+02 Score=21.43 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=21.9
Q ss_pred HHHHhhccHHHHHHHHHhcCCCCCCcHHHHHHHHHHh-Cc
Q psy1819 87 IATTMTQPLDVLKTRAMNATPGQFNSMWALVTYTAKL-GP 125 (141)
Q Consensus 87 ~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~i~~~-G~ 125 (141)
++++-.+|||.+|-.++..-.. -..+.+.+.+ |+
T Consensus 274 LaTFdnypfdllRfqL~Slist-----p~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSLIST-----PALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSCCCC-----CHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhhccC-----hHHHHHHHHhcCc
Confidence 4567789999999887765421 1445555555 74
Done!