RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1819
(141 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 48.0 bits (115), Expect = 2e-08
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 77 HFLSSLTAGAIATTMTQPLDVLKTRAMNATPG---QFNSMWALVTYTAKL-GPAGFFK 130
L+ AGAIA T+T PLDV+KTR ++ G ++ + K G G +K
Sbjct: 8 SLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYK 65
Score = 40.3 bits (95), Expect = 3e-05
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 2 VNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGCF------ILASLVSLFFY 55
V R+Q R YK +D ++YKEEG + LY G A+ + Y
Sbjct: 29 VKTRLQ---SSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTY 85
>gnl|CDD|177116 MTH00041, ND2, NADH dehydrogenase subunit 2; Validated.
Length = 349
Score = 28.7 bits (65), Expect = 0.95
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 44 FILASLVSLFFYL 56
I+ SL+SLFFYL
Sbjct: 282 LIIGSLLSLFFYL 294
>gnl|CDD|212010 cd11620, HR1_PKC-like_2_fungi, Second Protein kinase C-related
kinase homology region 1 (HR1) Rho-binding domain of
fungal Protein Kinase C-like proteins. This subfamily
is composed of fungal PKC-like proteins including Pkc1p
from Saccharomyces cerevisiae, and Pck1p and Pck2p from
Schizosaccharomyces pombe. The yeast PKC-like proteins
play a critical role in regulating cell wall
biosynthesis and maintaining cell wall integrity. They
contain two HR1 domains, C2 and C1 domains, and a
kinase domain. This model characterizes the second HR1
domain. HR1 domains are anti-parallel coiled-coil (ACC)
domains that bind small GTPases from the Rho family.
The HR1 domains of Pck1p and Pck2p interact with
GTP-bound Rho1p and Rho2p.
Length = 72
Score = 27.3 bits (61), Expect = 1.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 18 RNYKHAIDGMIRVYKEEGFKR 38
+ YK I+ M R+Y+ EG KR
Sbjct: 22 KQYKEGIEKMARLYQAEGDKR 42
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 27.8 bits (62), Expect = 2.0
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 5 RMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGCFILASLVSLFFYLISQVKLGL 64
R+ +D+ R + D ++++ K+ GF LY G + S+ + Y + GL
Sbjct: 140 RLASDIG--KGGDREFTGLFDCLMKISKQTGFLSLYQGFGV--SVQGIIVYRGAY--FGL 193
Query: 65 LSTP---YFEDNATTHFLSSLTAGAIATTM----TQPLDVLKTRAMNATPGQ-------F 110
+ F ++ T+ L T + + P D ++ R M + +
Sbjct: 194 YDSAKALLFGNDKNTNILYKWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYT 253
Query: 111 NSMWALVTYTAKLGPAGFFK 130
++ G GFFK
Sbjct: 254 GTLDCWKKILKNEGLGGFFK 273
Score = 25.9 bits (57), Expect = 8.5
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 20 YKHAIDGMIRVYKEEGFKRLYAGCFILASLVSLFFYLISQVKLGLLSTPYFED-----NA 74
Y ++ RV KE+G L+ G + ++ Y +Q YF++ N
Sbjct: 52 YSGIVNCFRRVSKEQGVLSLWRG-----NTANVIRYFPTQA-FNFAFKDYFKNMFPKYNQ 105
Query: 75 TTHF--------LSSLTAGAIATTMTQPLDVLKTR 101
T F LS AGA + + PLD +TR
Sbjct: 106 KTDFWKFFGVNILSGGLAGASSLLIVYPLDFARTR 140
Score = 25.9 bits (57), Expect = 9.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 20 YKHAIDGMIRVYKEEGFKRLYAGCF 44
Y +D ++ K EG + G +
Sbjct: 252 YTGTLDCWKKILKNEGLGGFFKGAW 276
>gnl|CDD|217038 pfam02445, NadA, Quinolinate synthetase A protein. Quinolinate
synthetase catalyzes the second step of the de novo
biosynthetic pathway of pyridine nucleotide formation.
In particular, quinolinate synthetase is involved in the
condensation of dihydroxyacetone phosphate and
iminoaspartate to form quinolinic acid. This synthesis
requires two enzymes, a FAD-containing "B protein" and
an "A protein".
Length = 296
Score = 27.4 bits (62), Expect = 2.2
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 6 MQNDVKLPPEQRRNYKHAIDGMIRV 30
++N++ +P E R + A++ M+ +
Sbjct: 272 LENEITVPEEIREKARRALERMLEL 296
>gnl|CDD|220432 pfam09835, DUF2062, Uncharacterized protein conserved in bacteria
(DUF2062). This domain, found in various prokaryotic
proteins, has no known function.
Length = 148
Score = 26.0 bits (58), Expect = 5.6
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 36 FKRLYAGCFILASLVSLFFYLIS 58
L G +L +++L Y +
Sbjct: 111 GPPLLLGSLVLGLVLALLGYFLV 133
>gnl|CDD|184381 PRK13900, PRK13900, type IV secretion system ATPase VirB11;
Provisional.
Length = 332
Score = 25.9 bits (57), Expect = 7.7
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 1 MVNVRMQNDVKLPPEQRRNY-KHAIDGMIRVYKEEGFKR 38
MV MQ + +PP+Q + Y + +D ++++ + G KR
Sbjct: 282 MV---MQAGLGMPPDQIKKYILNVVDIVVQLKRGSGGKR 317
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 26.0 bits (57), Expect = 8.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 84 AGAIATTMTQPLDVLKTR 101
AG IA +T P+DV+K+R
Sbjct: 189 AGGIAGFLTTPVDVIKSR 206
>gnl|CDD|220870 pfam10754, DUF2569, Protein of unknown function (DUF2569). This
family is conserved in bacteria. The function is not
known, but several members are annotated as being YdgK
or a homologue thereof.
Length = 149
Score = 25.7 bits (57), Expect = 8.1
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 43 CFILASLVSLFFYLISQVKLG-LLSTPYFEDNATTHFLSSLTAGAI 87
+I+ L + F + L +P + A LS L AI
Sbjct: 87 LYIIVLLAGVLFLAVDAFAFNYLPFSPVSDQEALRELLSPLLGAAI 132
>gnl|CDD|220488 pfam09950, DUF2184, Uncharacterized protein conserved in bacteria
(DUF2184). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 247
Score = 25.7 bits (57), Expect = 9.1
Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 30/100 (30%)
Query: 55 YLISQVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMT-QPLDVL------------KTR 101
L+ + LS+ L L I T T +PL + R
Sbjct: 132 LLLPPSQYLYLSSTRVSPATNRTILEFLQENNIYTAQTGRPLTIRGVKELEGAGTGGTDR 191
Query: 102 AM-----------------NATPGQFNSMWALVTYTAKLG 124
+ P Q+ + V ++LG
Sbjct: 192 MVAYTKDPDYVKFPLPMPFTFLPAQYRDLRFKVPGISRLG 231
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.391
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,885,920
Number of extensions: 589877
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 36
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)