RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1819
(141 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 139 bits (352), Expect = 9e-42
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 1 MVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGCF------ILASLVSLFF 54
+V VR Q + R Y+ ++ + +EEG + L+ G + + L
Sbjct: 127 VVKVRFQAQARAGG--GRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184
Query: 55 YLISQVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATPGQFNSMW 114
Y +K LL D+ HF S+ AG T + P+DV+KTR MN+ GQ++S
Sbjct: 185 Y--DLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAG 242
Query: 115 ALVTYTAK-LGPAGFFK 130
+ GP F+K
Sbjct: 243 HCALTMLRKEGPRAFYK 259
Score = 60.0 bits (146), Expect = 9e-12
Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 20/146 (13%)
Query: 1 MVNVRMQ----NDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGCFILASLVSLFFYL 56
VR+Q + + Y+ + ++ + + EG + LY G ++A L +
Sbjct: 24 TAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNG--LVAGLQRQMSF- 80
Query: 57 ISQVKLGL-------LSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTR--AMNATP 107
+ V++GL + + L+ T GA+A + QP DV+K R A
Sbjct: 81 -ASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG 139
Query: 108 GQFN--SMW-ALVTYTAKLGPAGFFK 130
G S A T + G G +K
Sbjct: 140 GGRRYQSTVEAYKTIAREEGIRGLWK 165
Score = 43.8 bits (104), Expect = 3e-06
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 11/67 (16%)
Query: 75 TTHFLSSLTAGAIATTMTQPLDVLKTR----------AMNATPGQFNSMWALVTYTAKL- 123
T FL + TA IA +T PLD K R A Q+ + + +
Sbjct: 2 TVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTE 61
Query: 124 GPAGFFK 130
GP +
Sbjct: 62 GPRSLYN 68
Score = 42.3 bits (100), Expect = 1e-05
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 5 RMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAG---CFI-LASLVSLFFYLISQV 60
R N Y A + + ++EG + Y G F+ L S + F Q+
Sbjct: 229 RYMNS------ALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQL 282
Query: 61 KLGLLSTPYFEDNATTH 77
K L++ + H
Sbjct: 283 KRALMAAYQSREAPFHH 299
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 67.7 bits (166), Expect = 1e-14
Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 25/146 (17%)
Query: 1 MVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGCFILASLV------SLFF 54
R+ DV QR + + + +++K +G + LY G S+ + +F
Sbjct: 135 FARTRLAADVGKGAAQRE-FTGLGNCITKIFKSDGLRGLYQG--FNVSVQGIIIYRAAYF 191
Query: 55 YLISQVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQ----PLDVLKTRAM-----NA 105
+ K D H + S T + P D ++ R M
Sbjct: 192 GVYDTAK------GMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKG 245
Query: 106 TPGQFNSMW-ALVTYTAKLGPAGFFK 130
+ GP FFK
Sbjct: 246 ADIMYTGTVDCWRKIAKDEGPKAFFK 271
Score = 67.7 bits (166), Expect = 1e-14
Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 19/146 (13%)
Query: 2 VNVRMQN-DVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGCFILASLVSLF------F 54
V + +Q + YK ID ++R+ KE+GF + G LA+++ F F
Sbjct: 31 VKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRG--NLANVIRYFPTQALNF 88
Query: 55 YLISQVKLGLLSTPYFEDNATTHFLSSL----TAGAIATTMTQPLDVLKTR-----AMNA 105
+ K L +F +L AGA + PLD +TR A
Sbjct: 89 AFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA 148
Query: 106 TPGQFNSMW-ALVTYTAKLGPAGFFK 130
+F + + G G ++
Sbjct: 149 AQREFTGLGNCITKIFKSDGLRGLYQ 174
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 5 RMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGCFI-----LASLVSLFFY 55
RM Y +D ++ K+EG K + G + + L Y
Sbjct: 236 RMMMQSGRKGADIM-YTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLY 290
Score = 33.4 bits (77), Expect = 0.015
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 77 HFLSSLTAGAIATTMTQPLDVLKTRAMN-------ATPGQFNSMWALVTYTAKL-GPAGF 128
FL+ A AI+ T P++ +K + Q+ + V K G F
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 129 FK 130
++
Sbjct: 70 WR 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.034
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 5 RMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKR---LY-AGCFI---LASLVSLFFYLI 57
+ ++ + + + ++ I + E Y I L ++ L Y++
Sbjct: 194 TLSELIRTTLDAEKVFTQGLN--ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 58 SQVKLGLLSTP-YFEDN---ATTHFLSSLTAGAIATTMT 92
+ LG TP AT H +TA AIA T +
Sbjct: 252 TAKLLGF--TPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Score = 30.4 bits (68), Expect = 0.20
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 23/88 (26%)
Query: 64 LLSTPYFEDNATTHFLSSLT----AGAI-ATTMTQP---------LDVLKTRAMNATPGQ 109
L + F++ +S T G + AT TQP + LK++ +
Sbjct: 1701 LKTEKIFKE--INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI----P 1754
Query: 110 FNSMWA---LVTYTAKLGPAGFFKLGDL 134
++ +A L Y A A + L
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESL 1782
Score = 29.2 bits (65), Expect = 0.44
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 34/113 (30%)
Query: 27 MIRVYKEEGFKRL-----------Y------AGCFILASLVSLFFYLISQVKL-GLL--- 65
K +G Y A + SLV + V G+
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV-------VFYRGMTMQV 1795
Query: 66 STPYFEDNATTHFLSSLTAGAIATTMTQ-PLDVLKTRAMNATPGQ-----FNS 112
+ P E + + + ++ G +A + +Q L + R T +N
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Score = 26.2 bits (57), Expect = 5.9
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 15/73 (20%)
Query: 65 LSTPYF--EDNATTHFLS-SLTAGAIATTMTQPLDVLKTRAMNATPGQFNSMWALVTYTA 121
+ P + D + LS S++ + + P+ T AT L
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT-------HILD---- 503
Query: 122 KLGPAGFFKLGDL 134
GP G LG L
Sbjct: 504 -FGPGGASGLGVL 515
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 1.2
Identities = 15/114 (13%), Positives = 29/114 (25%), Gaps = 41/114 (35%)
Query: 2 VNVRMQNDVKLPPEQRR---------------------NYKH--------AIDGMIRVYK 32
++ R Q LP E N+KH I+ + V +
Sbjct: 311 LDCRPQ---DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 33 EEGFKRLYAGCFILASLVSLFFYLISQVKLGLL---STPYFEDNATTHFLS-SL 82
+++++ + I + L L+ SL
Sbjct: 368 PAEYRKMFDRLSVFPPSA-----HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK,
cell inner membrane, cell membrane, membrane,
phospholipid biosynthesis; NMR {Escherichia coli}
Length = 121
Score = 25.5 bits (56), Expect = 4.3
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 18 RNYKHAIDGMIRVYKEEGFKRLYAGCFILASLVSLFFYL 56
+ ++ G+ + E R +LA +++ + +
Sbjct: 12 KAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDV 50
>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A
{Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A
Length = 300
Score = 25.6 bits (57), Expect = 7.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 6 MQNDVKLPPEQRRNYKHAIDGMIRV 30
M+ V++P E R + AI+ M+ +
Sbjct: 274 MKYKVEVPEEIARKARKAIERMLEM 298
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.391
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,007,936
Number of extensions: 102166
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 19
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.7 bits)