RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1819
         (141 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 39.7 bits (91), Expect = 4e-05
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 77  HFLSSLTAGAIATTMTQPLDVLKTR-------AMNATPGQFNSMWALVTYTAK 122
            FL+   A AI+ T   P++ +K            +   Q+  +   V    K
Sbjct: 9   DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPK 61



 Score = 39.3 bits (90), Expect = 5e-05
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 6/60 (10%)

Query: 1   MVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGCFI-----LASLVSLFFY 55
            V  RM             Y   +D   ++ K+EG K  + G +      +     L  Y
Sbjct: 231 TVRRRMMMQSGRKGADIM-YTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLY 289



 Score = 32.0 bits (71), Expect = 0.015
 Identities = 28/145 (19%), Positives = 43/145 (29%), Gaps = 15/145 (10%)

Query: 1   MVNVRMQNDVKLPPE-QRRNYKHAIDGMIRVYKEEGFK----RLYAGCFILASLVSLFFY 55
            V + +Q           + YK  ID ++R+ KE+GF        A         +L F 
Sbjct: 29  RVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFA 88

Query: 56  LISQVKLGLLSTPYFEDNATTHFL----SSLTAGAIATTMTQPLDVLKTRAMNAT----- 106
              + K   L           +F     S   AGA +     PLD  +TR          
Sbjct: 89  FKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAA 148

Query: 107 -PGQFNSMWALVTYTAKLGPAGFFK 130
                     +       G  G ++
Sbjct: 149 QREFTGLGNCITKIFKSDGLRGLYQ 173


>d1wzua1 c.145.1.1 (A:1-298) Quinolinate synthetase A, NadA
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 298

 Score = 26.1 bits (57), Expect = 1.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 6   MQNDVKLPPEQRRNYKHAIDGMIRV 30
           M+  V++P E  R  + AI+ M+ +
Sbjct: 274 MKYKVEVPEEIARKARKAIERMLEM 298


>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease
           spirochete (Borrelia burgdorferi), different strains
           [TaxId: 139]}
          Length = 164

 Score = 25.4 bits (56), Expect = 2.2
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 81  SLTAGA--IATTMTQPLDVLKTRAMNA 105
           SL +GA  I+  + + L+VLK   +  
Sbjct: 56  SLLSGAYAISDLIAEKLNVLKNEELKE 82


>d1j83a_ b.18.1.12 (A:) Endo-1,4-beta glucanase EngF {Clostridium
           cellulovorans [TaxId: 1493]}
          Length = 180

 Score = 23.8 bits (51), Expect = 9.6
 Identities = 9/49 (18%), Positives = 13/49 (26%)

Query: 85  GAIATTMTQPLDVLKTRAMNATPGQFNSMWALVTYTAKLGPAGFFKLGD 133
           G    TM          ++ A P      W   T   ++    F    D
Sbjct: 80  GDTKLTMDVIAPTPVNVSIAAIPQSSTHGWGNPTRAIRVWTNNFVAQTD 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 473,592
Number of extensions: 18459
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 8
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)