Query psy18190
Match_columns 108
No_of_seqs 108 out of 1024
Neff 7.2
Searched_HMMs 46136
Date Sat Aug 17 01:09:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 3.4E-35 7.3E-40 245.7 8.0 97 5-101 463-562 (821)
2 cd01381 MYSc_type_VII Myosin m 100.0 4.8E-35 1E-39 241.0 8.7 99 5-103 363-464 (671)
3 cd01383 MYSc_type_VIII Myosin 100.0 5.3E-35 1.2E-39 240.9 8.4 96 5-100 366-464 (677)
4 cd01387 MYSc_type_XV Myosin mo 100.0 5.3E-35 1.1E-39 241.0 8.3 97 5-101 362-461 (677)
5 cd01384 MYSc_type_XI Myosin mo 100.0 7.1E-35 1.5E-39 240.1 8.2 98 5-102 368-468 (674)
6 cd01385 MYSc_type_IX Myosin mo 100.0 7.9E-35 1.7E-39 240.4 8.1 99 5-103 377-479 (692)
7 cd01382 MYSc_type_VI Myosin mo 100.0 1.6E-34 3.4E-39 239.3 7.5 92 5-96 398-489 (717)
8 cd01379 MYSc_type_III Myosin m 100.0 2.9E-34 6.2E-39 235.8 7.5 92 5-96 374-465 (653)
9 cd01378 MYSc_type_I Myosin mot 100.0 3.3E-34 7.1E-39 236.2 7.7 97 5-101 367-468 (674)
10 cd01380 MYSc_type_V Myosin mot 100.0 4.5E-34 9.7E-39 235.9 8.1 98 5-103 369-469 (691)
11 cd01377 MYSc_type_II Myosin mo 100.0 6E-34 1.3E-38 235.2 8.4 98 5-102 375-476 (693)
12 COG5022 Myosin heavy chain [Cy 100.0 3.1E-34 6.8E-39 245.2 6.2 92 4-95 428-520 (1463)
13 smart00242 MYSc Myosin. Large 100.0 1.9E-33 4.2E-38 231.8 8.0 98 5-102 370-470 (677)
14 cd00124 MYSc Myosin motor doma 100.0 8.3E-33 1.8E-37 228.1 7.8 98 5-102 363-463 (679)
15 cd01386 MYSc_type_XVIII Myosin 100.0 6.9E-32 1.5E-36 224.8 7.9 98 5-102 374-495 (767)
16 PF00063 Myosin_head: Myosin h 100.0 8.4E-32 1.8E-36 221.9 6.7 99 4-102 364-466 (689)
17 KOG0164|consensus 100.0 1.4E-29 3E-34 206.7 5.4 97 5-101 376-476 (1001)
18 KOG0161|consensus 100.0 2E-29 4.4E-34 221.9 5.7 92 4-96 448-540 (1930)
19 KOG0163|consensus 100.0 3.9E-29 8.5E-34 205.1 6.5 99 5-103 452-550 (1259)
20 KOG0160|consensus 99.9 4.6E-26 1E-30 190.1 5.9 92 4-96 368-459 (862)
21 KOG0162|consensus 99.9 4.5E-26 9.7E-31 186.6 3.9 88 6-93 385-473 (1106)
22 KOG4229|consensus 99.9 1.5E-24 3.2E-29 184.4 5.2 93 4-96 427-519 (1062)
23 COG1084 Predicted GTPase [Gene 36.8 13 0.00028 29.4 0.3 24 2-28 219-242 (346)
24 PF04548 AIG1: AIG1 family; I 24.1 27 0.00059 24.8 0.1 12 2-13 53-64 (212)
25 KOG2655|consensus 23.6 67 0.0014 25.6 2.2 33 2-39 83-115 (366)
26 COG2153 ElaA Predicted acyltra 21.2 40 0.00086 23.7 0.5 28 29-56 117-144 (155)
27 PF01926 MMR_HSR1: 50S ribosom 21.0 37 0.0008 21.2 0.3 10 2-11 51-60 (116)
28 cd01852 AIG1 AIG1 (avrRpt2-ind 20.1 43 0.00093 23.2 0.5 12 2-13 53-64 (196)
No 1
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3.4e-35 Score=245.68 Aligned_cols=97 Identities=29% Similarity=0.420 Sum_probs=91.8
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|+|||||||.|+.|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++||
T Consensus 463 ~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLD 542 (821)
T PTZ00014 463 FIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILE 542 (821)
T ss_pred eEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcc---hhHHHhhh
Q psy18190 85 DQAKRNREN---LLNEKREK 101 (108)
Q Consensus 85 ee~~~pk~~---~~~~~~~~ 101 (108)
|||++|+++ ++.++.+.
T Consensus 543 Eec~~p~~tD~~f~~kl~~~ 562 (821)
T PTZ00014 543 DQCLAPGGTDEKFVSSCNTN 562 (821)
T ss_pred HHhCCCCCCHHHHHHHHHHH
Confidence 999999998 44455543
No 2
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=4.8e-35 Score=241.01 Aligned_cols=99 Identities=38% Similarity=0.639 Sum_probs=92.9
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|+|||||||.++.||||||||||||||||++|++++|..++++|.+|||.|.+++|.||++|++||+++|.|||++||
T Consensus 363 ~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLD 442 (671)
T cd01381 363 SIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLID 442 (671)
T ss_pred eEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceech
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcchh---HHHhhhhc
Q psy18190 85 DQAKRNRENLL---NEKREKKE 103 (108)
Q Consensus 85 ee~~~pk~~~~---~~~~~~~~ 103 (108)
|||++|++++. .++.+.+.
T Consensus 443 ee~~~p~~td~~f~~kl~~~~~ 464 (671)
T cd01381 443 EESKFPKGTDQTMLEKLHSQHG 464 (671)
T ss_pred HhhcCCCCCHHHHHHHHHHHhc
Confidence 99999999944 46655443
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=5.3e-35 Score=240.90 Aligned_cols=96 Identities=43% Similarity=0.755 Sum_probs=91.8
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|+|||||||.++.||||||||||||||||++|++++|..++++|.+|||.|..++|.||++|++||+++|.|||++||
T Consensus 366 ~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLd 445 (677)
T cd01383 366 SISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLD 445 (677)
T ss_pred eEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcc---hhHHHhh
Q psy18190 85 DQAKRNREN---LLNEKRE 100 (108)
Q Consensus 85 ee~~~pk~~---~~~~~~~ 100 (108)
|||++|+++ ++.++++
T Consensus 446 ee~~~p~~tD~~f~~kl~~ 464 (677)
T cd01383 446 EESTFPNATDLTFANKLKQ 464 (677)
T ss_pred HHHcCCCCCHHHHHHHHHH
Confidence 999999999 4446654
No 4
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=5.3e-35 Score=240.96 Aligned_cols=97 Identities=40% Similarity=0.598 Sum_probs=91.7
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|+|||||||.++.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++||
T Consensus 362 ~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLd 441 (677)
T cd01387 362 SIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILD 441 (677)
T ss_pred eEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcchhH---HHhhh
Q psy18190 85 DQAKRNRENLLN---EKREK 101 (108)
Q Consensus 85 ee~~~pk~~~~~---~~~~~ 101 (108)
|||++|++++.+ ++...
T Consensus 442 ee~~~p~~td~~~~~kl~~~ 461 (677)
T cd01387 442 DQCCFPQATDHTFLQKCHYH 461 (677)
T ss_pred HHhcCCCCchHHHHHHHHHh
Confidence 999999998544 55443
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=7.1e-35 Score=240.06 Aligned_cols=98 Identities=42% Similarity=0.662 Sum_probs=92.7
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|+|||||||.++.|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++||
T Consensus 368 ~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLd 447 (674)
T cd01384 368 LIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLD 447 (674)
T ss_pred EEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcc---hhHHHhhhh
Q psy18190 85 DQAKRNREN---LLNEKREKK 102 (108)
Q Consensus 85 ee~~~pk~~---~~~~~~~~~ 102 (108)
|||++|+++ ++.++++.+
T Consensus 448 ee~~~p~~td~~f~~kl~~~~ 468 (674)
T cd01384 448 EACMFPKSTHETFAQKLYQTF 468 (674)
T ss_pred HHHcCCCCCHHHHHHHHHHHh
Confidence 999999998 444666544
No 6
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=7.9e-35 Score=240.36 Aligned_cols=99 Identities=46% Similarity=0.834 Sum_probs=92.9
Q ss_pred ccccccccCcCCCCC-cchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccc
Q psy18190 5 LCGSVRLKKKKKKKK-EDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 83 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~-N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiL 83 (108)
++|+|||||||.+.. ||||||||||||||||++|++++|..++++|..|||+|.+++|.||++|++||+++|.|||++|
T Consensus 377 ~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lL 456 (692)
T cd01385 377 SIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLL 456 (692)
T ss_pred EEEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHh
Confidence 689999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcccCcc---hhHHHhhhhc
Q psy18190 84 DDQAKRNREN---LLNEKREKKE 103 (108)
Q Consensus 84 Dee~~~pk~~---~~~~~~~~~~ 103 (108)
||||++|+++ ++.++++.+.
T Consensus 457 dee~~~p~~td~~~l~kl~~~~~ 479 (692)
T cd01385 457 DEESNFPHATSQTLLAKFNQQHK 479 (692)
T ss_pred HHHhcCCCCCHHHHHHHHHHHhC
Confidence 9999999998 4446665443
No 7
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.6e-34 Score=239.33 Aligned_cols=92 Identities=34% Similarity=0.645 Sum_probs=89.1
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|+|||||||.++.||||||||||||||||++|++++|..++++|.+|||+|.+++|.||++|++||+++|.|||++||
T Consensus 398 ~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLD 477 (717)
T cd01382 398 FIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILD 477 (717)
T ss_pred EEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcchhH
Q psy18190 85 DQAKRNRENLLN 96 (108)
Q Consensus 85 ee~~~pk~~~~~ 96 (108)
|||++|++++.+
T Consensus 478 ee~~~p~~tD~~ 489 (717)
T cd01382 478 EENRLPQPSDQH 489 (717)
T ss_pred HHhcCCCCCHHH
Confidence 999999988443
No 8
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=2.9e-34 Score=235.84 Aligned_cols=92 Identities=42% Similarity=0.691 Sum_probs=89.2
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|+|||||||.++.||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++||
T Consensus 374 ~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLd 453 (653)
T cd01379 374 NVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLD 453 (653)
T ss_pred eEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcchhH
Q psy18190 85 DQAKRNRENLLN 96 (108)
Q Consensus 85 ee~~~pk~~~~~ 96 (108)
|||++|++++.+
T Consensus 454 ee~~~~~~td~~ 465 (653)
T cd01379 454 EESRFPQATDQT 465 (653)
T ss_pred HHhcCCCCCHHH
Confidence 999999998444
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=3.3e-34 Score=236.22 Aligned_cols=97 Identities=37% Similarity=0.684 Sum_probs=91.5
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhc-CCCcccccc
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVL 83 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~-~p~GllsiL 83 (108)
++|+|||||||.+..|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++ +|.|||++|
T Consensus 367 ~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lL 446 (674)
T cd01378 367 VIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSIL 446 (674)
T ss_pred eEEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred hHhhccc-Ccc---hhHHHhhh
Q psy18190 84 DDQAKRN-REN---LLNEKREK 101 (108)
Q Consensus 84 Dee~~~p-k~~---~~~~~~~~ 101 (108)
||||++| +++ ++.++.+.
T Consensus 447 dee~~~p~~~tD~~~~~kl~~~ 468 (674)
T cd01378 447 DDVCATPHEGTDQTFLEKLNKK 468 (674)
T ss_pred HHHHcCCCCCChHHHHHHHHHH
Confidence 9999999 887 44466543
No 10
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=4.5e-34 Score=235.92 Aligned_cols=98 Identities=43% Similarity=0.732 Sum_probs=92.1
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|+|||||||.++.|||||||||||||+||++|++++|..++++|.+|||+|+.++|.||++|+|||++ |.|||++||
T Consensus 369 ~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLd 447 (691)
T cd01380 369 FIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLD 447 (691)
T ss_pred eEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999997 699999999
Q ss_pred HhhcccCcc---hhHHHhhhhc
Q psy18190 85 DQAKRNREN---LLNEKREKKE 103 (108)
Q Consensus 85 ee~~~pk~~---~~~~~~~~~~ 103 (108)
|||++|+++ ++.++++.+.
T Consensus 448 ee~~~p~~td~~f~~kl~~~~~ 469 (691)
T cd01380 448 EECRLPKGSDESWAQKLYNKLP 469 (691)
T ss_pred HhhcCCCCChHHHHHHHHHHhc
Confidence 999999998 5556666554
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=6e-34 Score=235.21 Aligned_cols=98 Identities=37% Similarity=0.695 Sum_probs=91.5
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeecc-CCchhHHHHhhcCCCcccccc
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVL 83 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~ldli~~~p~GllsiL 83 (108)
++|+|||||||.++.|||||||||||||+||++|++++|..++++|.+|||.|+.++| .||++|++||+++|.|||++|
T Consensus 375 ~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lL 454 (693)
T cd01377 375 FIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLL 454 (693)
T ss_pred eEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhh
Confidence 6899999999999999999999999999999999999999999999999999999999 599999999999999999999
Q ss_pred hHhhcccCcc---hhHHHhhhh
Q psy18190 84 DDQAKRNREN---LLNEKREKK 102 (108)
Q Consensus 84 Dee~~~pk~~---~~~~~~~~~ 102 (108)
||||++|+++ ++.++++.+
T Consensus 455 dee~~~~~~tD~~~~~kl~~~~ 476 (693)
T cd01377 455 DEECVFPKATDKTFVEKLYDNH 476 (693)
T ss_pred hHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999988 444555433
No 12
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.1e-34 Score=245.19 Aligned_cols=92 Identities=43% Similarity=0.777 Sum_probs=88.5
Q ss_pred cccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhc-CCCccccc
Q psy18190 4 KLCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCV 82 (108)
Q Consensus 4 ~~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~-~p~Gllsi 82 (108)
.|||||||+|||.|+.||||||||||||||||++|++++|..||++|.+|||.|.+++|.||++|+|||++ +|.|||++
T Consensus 428 ~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlsl 507 (1463)
T COG5022 428 NFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSL 507 (1463)
T ss_pred cceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999997 47899999
Q ss_pred chHhhcccCcchh
Q psy18190 83 LDDQAKRNRENLL 95 (108)
Q Consensus 83 LDee~~~pk~~~~ 95 (108)
|||||..|.+++.
T Consensus 508 LDEE~~~p~atd~ 520 (1463)
T COG5022 508 LDEECVMPHATDE 520 (1463)
T ss_pred hcHHhcCCCCCch
Confidence 9999999999833
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.9e-33 Score=231.78 Aligned_cols=98 Identities=44% Similarity=0.814 Sum_probs=92.4
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|+|||||||.++.||||||||||||||||++|++++|..++++|.+|||.|+.+.|.||++|++||+++|.|||++||
T Consensus 370 ~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLd 449 (677)
T smart00242 370 FIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLD 449 (677)
T ss_pred EEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcc---hhHHHhhhh
Q psy18190 85 DQAKRNREN---LLNEKREKK 102 (108)
Q Consensus 85 ee~~~pk~~---~~~~~~~~~ 102 (108)
|||++|+++ ++.++.+.+
T Consensus 450 ee~~~~~~td~~~~~kl~~~~ 470 (677)
T smart00242 450 EECRFPKATDQTFLEKLNQTH 470 (677)
T ss_pred HHhcCCCCCHHHHHHHHHHHh
Confidence 999999988 444666544
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.98 E-value=8.3e-33 Score=228.09 Aligned_cols=98 Identities=46% Similarity=0.788 Sum_probs=92.4
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|+|||||||.++.|+|||||||||||+||++|++++|..++++|..|||.|..+.|.||++|++||+++|.|||++||
T Consensus 363 ~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLd 442 (679)
T cd00124 363 FIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLD 442 (679)
T ss_pred eeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcc---hhHHHhhhh
Q psy18190 85 DQAKRNREN---LLNEKREKK 102 (108)
Q Consensus 85 ee~~~pk~~---~~~~~~~~~ 102 (108)
|||++|+++ ++.++.+.+
T Consensus 443 ee~~~~~~~d~~~~~kl~~~~ 463 (679)
T cd00124 443 EECLFPKGTDETFLEKLNNKL 463 (679)
T ss_pred HHhCCCCCCHHHHHHHHHHHh
Confidence 999999988 455665444
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.97 E-value=6.9e-32 Score=224.76 Aligned_cols=98 Identities=27% Similarity=0.357 Sum_probs=88.3
Q ss_pred ccccccccCcCCCCC------cchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeecc-CCchhHHHHhhcCC-
Q psy18190 5 LCGSVRLKKKKKKKK------EDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP- 76 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~------N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~ldli~~~p- 76 (108)
++|+|||||||.|.. |||||||||||||+||++|++++|..++++|..|||+|+.+.+ .||++|+++|+++|
T Consensus 374 ~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~ 453 (767)
T cd01386 374 SIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQ 453 (767)
T ss_pred EEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccc
Confidence 689999999999974 8999999999999999999999999999999999999987666 79999999999865
Q ss_pred -------------CcccccchHhhcccCcc---hhHHHhhhh
Q psy18190 77 -------------NGLLCVLDDQAKRNREN---LLNEKREKK 102 (108)
Q Consensus 77 -------------~GllsiLDee~~~pk~~---~~~~~~~~~ 102 (108)
.|||++|||||++|+++ ++.++.+.+
T Consensus 454 ~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~ 495 (767)
T cd01386 454 QVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAY 495 (767)
T ss_pred cccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHh
Confidence 59999999999999998 445665543
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.97 E-value=8.4e-32 Score=221.92 Aligned_cols=99 Identities=44% Similarity=0.794 Sum_probs=86.1
Q ss_pred cccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeecc-CCchhHHHHhhcCCCccccc
Q psy18190 4 KLCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCV 82 (108)
Q Consensus 4 ~~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~ldli~~~p~Gllsi 82 (108)
-++|||||||||.+..|+||||||||||||||++|++++|..++++|.+|||.|+.++| .||++|++||+++|.|||++
T Consensus 364 ~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~l 443 (689)
T PF00063_consen 364 SSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSL 443 (689)
T ss_dssp EEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHH
T ss_pred ccCcccCccccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred chHhhcccCcc---hhHHHhhhh
Q psy18190 83 LDDQAKRNREN---LLNEKREKK 102 (108)
Q Consensus 83 LDee~~~pk~~---~~~~~~~~~ 102 (108)
|||||++|+++ ++.++.+.+
T Consensus 444 Ldee~~~~~~sd~~fl~kl~~~~ 466 (689)
T PF00063_consen 444 LDEECLLPRGSDESFLEKLLKRH 466 (689)
T ss_dssp HHHHCTSTTS-HHHHHHHHHHHH
T ss_pred hhhhhhcccchhhHHHHHHHhhc
Confidence 99999999977 444555555
No 17
>KOG0164|consensus
Probab=99.96 E-value=1.4e-29 Score=206.67 Aligned_cols=97 Identities=37% Similarity=0.658 Sum_probs=90.8
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
.+|+|||||||.++.|||||||||||||+||+.|++.+++.||+||..|||+|.+++|.+|..++||++.+..||++|||
T Consensus 376 Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailD 455 (1001)
T KOG0164|consen 376 VIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILD 455 (1001)
T ss_pred EEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcc----hhHHHhhh
Q psy18190 85 DQAKRNREN----LLNEKREK 101 (108)
Q Consensus 85 ee~~~pk~~----~~~~~~~~ 101 (108)
|+|+.|+.- |+.++.++
T Consensus 456 e~Cl~~G~vtD~tfL~~l~~~ 476 (1001)
T KOG0164|consen 456 EACLRPGTVTDETFLEKLNQK 476 (1001)
T ss_pred HHhcCCCccchHHHHHHHHHH
Confidence 999999733 66666543
No 18
>KOG0161|consensus
Probab=99.95 E-value=2e-29 Score=221.90 Aligned_cols=92 Identities=39% Similarity=0.694 Sum_probs=88.2
Q ss_pred cccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeecc-CCchhHHHHhhcCCCccccc
Q psy18190 4 KLCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCV 82 (108)
Q Consensus 4 ~~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~ldli~~~p~Gllsi 82 (108)
=|||||||.|||.|..||||||||||+||+||++|++++|..++++|..|||.|.+++| .|-++|++||++ |+||+|+
T Consensus 448 ~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~sl 526 (1930)
T KOG0161|consen 448 YFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSL 526 (1930)
T ss_pred CcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999 899999999996 7899999
Q ss_pred chHhhcccCcchhH
Q psy18190 83 LDDQAKRNRENLLN 96 (108)
Q Consensus 83 LDee~~~pk~~~~~ 96 (108)
|||||++|++++.+
T Consensus 527 LdEEc~~PkAtd~t 540 (1930)
T KOG0161|consen 527 LDEECVVPKATDKT 540 (1930)
T ss_pred HHHHHhcCCCccch
Confidence 99999999999444
No 19
>KOG0163|consensus
Probab=99.95 E-value=3.9e-29 Score=205.08 Aligned_cols=99 Identities=37% Similarity=0.640 Sum_probs=93.3
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
|+|+||+.|||-+.+|||||||||||||+||++|+++++..+|+.|..||+.++.+.|.||++|++||+.+..|||.|||
T Consensus 452 fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLD 531 (1259)
T KOG0163|consen 452 FIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLD 531 (1259)
T ss_pred eeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcchhHHHhhhhc
Q psy18190 85 DQAKRNRENLLNEKREKKE 103 (108)
Q Consensus 85 ee~~~pk~~~~~~~~~~~~ 103 (108)
||+++|++++..+...-||
T Consensus 532 EEaklP~~s~qhFT~~vHe 550 (1259)
T KOG0163|consen 532 EEAKLPKPSYQHFTARVHE 550 (1259)
T ss_pred hhccCCCcchHHHHHHHHH
Confidence 9999999996664444443
No 20
>KOG0160|consensus
Probab=99.92 E-value=4.6e-26 Score=190.14 Aligned_cols=92 Identities=46% Similarity=0.758 Sum_probs=88.1
Q ss_pred cccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccc
Q psy18190 4 KLCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 83 (108)
Q Consensus 4 ~~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiL 83 (108)
-++|+||++|||.+..|+|||||||||||+||+.|.+|+|..++++|..|+|+|..++|.||++|+++|++ |.|++++|
T Consensus 368 ~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Ll 446 (862)
T KOG0160|consen 368 RFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALL 446 (862)
T ss_pred ceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhcc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred hHhhcccCcchhH
Q psy18190 84 DDQAKRNRENLLN 96 (108)
Q Consensus 84 Dee~~~pk~~~~~ 96 (108)
||+|++|+++..+
T Consensus 447 de~c~lp~~t~~~ 459 (862)
T KOG0160|consen 447 DEECMLPKGTDET 459 (862)
T ss_pred chhccCCCCCcch
Confidence 9999999988333
No 21
>KOG0162|consensus
Probab=99.92 E-value=4.5e-26 Score=186.64 Aligned_cols=88 Identities=34% Similarity=0.649 Sum_probs=84.2
Q ss_pred cccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhc-CCCcccccch
Q psy18190 6 CGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLD 84 (108)
Q Consensus 6 ~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~-~p~GllsiLD 84 (108)
+|||||+|||.|+.|||||+||||.||+||+.|++.+++.||++|.+|||.|.++.|.||.-++|||+. +|.|||++||
T Consensus 385 IGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ld 464 (1106)
T KOG0162|consen 385 IGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALD 464 (1106)
T ss_pred eeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999996 6889999999
Q ss_pred HhhcccCcc
Q psy18190 85 DQAKRNREN 93 (108)
Q Consensus 85 ee~~~pk~~ 93 (108)
|.|...-++
T Consensus 465 D~~At~Ha~ 473 (1106)
T KOG0162|consen 465 DVCATAHAD 473 (1106)
T ss_pred HHHHHhccc
Confidence 999886544
No 22
>KOG4229|consensus
Probab=99.90 E-value=1.5e-24 Score=184.42 Aligned_cols=93 Identities=44% Similarity=0.772 Sum_probs=90.3
Q ss_pred cccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccc
Q psy18190 4 KLCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 83 (108)
Q Consensus 4 ~~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiL 83 (108)
+-+|++|+||||++..|+|||+|||+|||++|.++.+++|..++++|..|+|.|..+.|.||..|+++|..+|+||+.+|
T Consensus 427 ~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~li 506 (1062)
T KOG4229|consen 427 LSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLI 506 (1062)
T ss_pred ceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhhee
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcccCcchhH
Q psy18190 84 DDQAKRNRENLLN 96 (108)
Q Consensus 84 Dee~~~pk~~~~~ 96 (108)
||||.+|++++.+
T Consensus 507 Dees~fP~~td~t 519 (1062)
T KOG4229|consen 507 DEESRFPKATDQT 519 (1062)
T ss_pred cccCcCCchHHHH
Confidence 9999999999655
No 23
>COG1084 Predicted GTPase [General function prediction only]
Probab=36.79 E-value=13 Score=29.35 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=16.6
Q ss_pred cccccccccccCcCCCCCcchhhhHhh
Q psy18190 2 CVKLCGSVRLKKKKKKKKEDFEQLCIN 28 (108)
Q Consensus 2 ~~~~~g~ld~~gfe~~~~N~feqlciN 28 (108)
+||+||+||=.-- ++|..|--.|.
T Consensus 219 vIDTPGlLDRPl~---ErN~IE~qAi~ 242 (346)
T COG1084 219 VIDTPGLLDRPLE---ERNEIERQAIL 242 (346)
T ss_pred EecCCcccCCChH---HhcHHHHHHHH
Confidence 6899999997542 35777754443
No 24
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=24.14 E-value=27 Score=24.85 Aligned_cols=12 Identities=8% Similarity=0.025 Sum_probs=7.7
Q ss_pred cccccccccccC
Q psy18190 2 CVKLCGSVRLKK 13 (108)
Q Consensus 2 ~~~~~g~ld~~g 13 (108)
+||+||+.|.-+
T Consensus 53 VIDTPGl~d~~~ 64 (212)
T PF04548_consen 53 VIDTPGLFDSDG 64 (212)
T ss_dssp EEE--SSEETTE
T ss_pred EEeCCCCCCCcc
Confidence 789999988743
No 25
>KOG2655|consensus
Probab=23.64 E-value=67 Score=25.64 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=21.9
Q ss_pred cccccccccccCcCCCCCcchhhhHhhhhhhhHHHHHH
Q psy18190 2 CVKLCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFN 39 (108)
Q Consensus 2 ~~~~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~ 39 (108)
|||+|||=|..- ..+.| +-.++|..++.++|+.
T Consensus 83 vidtPGfGD~vd----ns~~w-~pi~~yi~~q~~~yl~ 115 (366)
T KOG2655|consen 83 VIDTPGFGDAVD----NSNCW-RPIVNYIDSQFDQYLD 115 (366)
T ss_pred EeccCCCccccc----ccccc-hhhhHHHHHHHHHHHh
Confidence 578888877733 12233 5567888888877764
No 26
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=21.20 E-value=40 Score=23.68 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHHhhHHHHHHhhhhcCcc
Q psy18190 29 YANEHLQYYFNQHVFQYEQEEYNKEGIR 56 (108)
Q Consensus 29 ~anE~l~~~~~~~~f~~~~~ey~~Egi~ 56 (108)
-|++.||.+|-+.-|....++|.+.||+
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIp 144 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIP 144 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCC
Confidence 4788899999999999999999999985
No 27
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=20.99 E-value=37 Score=21.21 Aligned_cols=10 Identities=20% Similarity=-0.134 Sum_probs=5.7
Q ss_pred cccccccccc
Q psy18190 2 CVKLCGSVRL 11 (108)
Q Consensus 2 ~~~~~g~ld~ 11 (108)
+||+||+.+-
T Consensus 51 ~vDtpG~~~~ 60 (116)
T PF01926_consen 51 LVDTPGINDG 60 (116)
T ss_dssp EEESSSCSSS
T ss_pred EEeCCCCccc
Confidence 4677775443
No 28
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=20.13 E-value=43 Score=23.21 Aligned_cols=12 Identities=8% Similarity=0.019 Sum_probs=9.8
Q ss_pred cccccccccccC
Q psy18190 2 CVKLCGSVRLKK 13 (108)
Q Consensus 2 ~~~~~g~ld~~g 13 (108)
+||+||+.|..+
T Consensus 53 viDTPG~~d~~~ 64 (196)
T cd01852 53 VIDTPGLFDTSV 64 (196)
T ss_pred EEECcCCCCccC
Confidence 689999998754
Done!