Query psy18190
Match_columns 108
No_of_seqs 108 out of 1024
Neff 7.2
Searched_HMMs 29240
Date Sat Aug 17 01:09:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 1.8E-36 6.3E-41 249.0 7.6 96 5-100 381-479 (697)
2 2v26_A Myosin VI; calmodulin-b 100.0 2.6E-36 8.8E-41 250.7 7.8 97 5-101 447-546 (784)
3 1w7j_A Myosin VA; motor protei 100.0 1.3E-35 4.4E-40 246.7 8.4 97 5-102 432-531 (795)
4 4anj_A Unconventional myosin-V 100.0 1.5E-35 5.2E-40 251.5 7.8 98 5-102 451-551 (1052)
5 1w9i_A Myosin II heavy chain; 100.0 3E-35 1E-39 243.7 8.5 92 5-96 449-542 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 1.9E-35 6.5E-40 245.3 7.1 97 5-102 456-556 (783)
7 1kk8_A Myosin heavy chain, str 100.0 6.4E-35 2.2E-39 243.6 7.2 91 5-96 455-546 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 9.4E-35 3.2E-39 247.5 7.9 97 5-102 432-531 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 1.4E-34 4.9E-39 244.9 7.8 98 5-102 428-531 (995)
10 1g8x_A Myosin II heavy chain f 100.0 4.9E-34 1.7E-38 241.8 8.4 92 5-96 449-542 (1010)
11 1i84_S Smooth muscle myosin he 100.0 3.7E-34 1.3E-38 245.2 7.3 98 5-102 459-562 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 36.2 8.8 0.0003 21.4 0.3 26 64-89 25-50 (53)
13 1mof_A Moloney murine leukemia 30.9 11 0.00037 21.2 0.1 26 64-89 27-52 (55)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.8e-36 Score=249.03 Aligned_cols=96 Identities=34% Similarity=0.558 Sum_probs=91.5
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|||||||||.++.|||||||||||||+||++|++++|..+|++|.+|||+|.+++|.||++|+|||+++|.|||+|||
T Consensus 381 ~IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLD 460 (697)
T 1lkx_A 381 VIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLD 460 (697)
T ss_dssp EEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHH
T ss_pred eEEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcch---hHHHhh
Q psy18190 85 DQAKRNRENL---LNEKRE 100 (108)
Q Consensus 85 ee~~~pk~~~---~~~~~~ 100 (108)
|||++|++++ +.++.+
T Consensus 461 Eec~~p~~tD~~f~~kl~~ 479 (697)
T 1lkx_A 461 EACLIAKSTDQTFLDSICK 479 (697)
T ss_dssp HHHHSTTCCHHHHHHHHHH
T ss_pred HhhCCCCCChHHHHHHHHH
Confidence 9999999984 445554
No 2
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=2.6e-36 Score=250.65 Aligned_cols=97 Identities=32% Similarity=0.604 Sum_probs=91.8
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|||||||||.|+.|||||||||||||+||++|++++|..+|++|.+|||+|.+++|.||++|+|||+++|+|||+|||
T Consensus 447 ~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLD 526 (784)
T 2v26_A 447 FIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILD 526 (784)
T ss_dssp EEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHH
T ss_pred eeeecccCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcch---hHHHhhh
Q psy18190 85 DQAKRNRENL---LNEKREK 101 (108)
Q Consensus 85 ee~~~pk~~~---~~~~~~~ 101 (108)
|||++|++++ +.++.+.
T Consensus 527 Ee~~~p~~tD~~f~~kl~~~ 546 (784)
T 2v26_A 527 EENRLPQPSDQHFTSAVHQK 546 (784)
T ss_dssp HHHHSSSCCHHHHHHHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHH
Confidence 9999999984 4455443
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1.3e-35 Score=246.72 Aligned_cols=97 Identities=41% Similarity=0.668 Sum_probs=91.2
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|||||||||.|+.|||||||||||||+||++|++++|..||++|.+|||+|..++|.||++|+|||+++ .|||+|||
T Consensus 432 ~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLD 510 (795)
T 1w7j_A 432 FIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLD 510 (795)
T ss_dssp EEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHH
T ss_pred eEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999986 99999999
Q ss_pred HhhcccCcch---hHHHhhhh
Q psy18190 85 DQAKRNRENL---LNEKREKK 102 (108)
Q Consensus 85 ee~~~pk~~~---~~~~~~~~ 102 (108)
|||++|++++ +.++.+.+
T Consensus 511 Eec~~p~~tD~~f~~kl~~~~ 531 (795)
T 1w7j_A 511 EECKMPKGSDDTWAQKLYNTH 531 (795)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred hhccCCCCChHHHHHHHHHHh
Confidence 9999999985 44555544
No 4
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.5e-35 Score=251.45 Aligned_cols=98 Identities=32% Similarity=0.600 Sum_probs=92.6
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
++|||||||||.++.|||||||||||||+||++|++++|..+|++|..|||+|..++|.||++|+|||+++|.|||++||
T Consensus 451 ~IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLD 530 (1052)
T 4anj_A 451 FIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILD 530 (1052)
T ss_dssp EEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHH
T ss_pred eEEEEecCCCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCcch---hHHHhhhh
Q psy18190 85 DQAKRNRENL---LNEKREKK 102 (108)
Q Consensus 85 ee~~~pk~~~---~~~~~~~~ 102 (108)
|||++|++++ +.++.+.+
T Consensus 531 Ee~~~p~~tD~~f~~kl~~~~ 551 (1052)
T 4anj_A 531 EENRLPQPSDQHFTSAVHQKH 551 (1052)
T ss_dssp HHHHSSSCCHHHHHHHHHHTT
T ss_pred HHhcCCCCcHHHHHHHHHHHh
Confidence 9999999984 44555444
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=3e-35 Score=243.71 Aligned_cols=92 Identities=41% Similarity=0.728 Sum_probs=88.3
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeecc-CCchhHHHHhhcC-CCccccc
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCV 82 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~ldli~~~-p~Gllsi 82 (108)
++|+|||||||.|+.|||||||||||||+||++|++++|..||++|.+|||+|..++| .||++|+|||+++ |+|||+|
T Consensus 449 ~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~Gilsl 528 (770)
T 1w9i_A 449 FIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILAL 528 (770)
T ss_dssp EEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHH
T ss_pred eeeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhh
Confidence 7999999999999999999999999999999999999999999999999999999999 5999999999984 9999999
Q ss_pred chHhhcccCcchhH
Q psy18190 83 LDDQAKRNRENLLN 96 (108)
Q Consensus 83 LDee~~~pk~~~~~ 96 (108)
|||||++|++++.+
T Consensus 529 LDEec~~p~~tD~~ 542 (770)
T 1w9i_A 529 LDEQSVFPNATDNT 542 (770)
T ss_dssp HHHHHSSSSCCHHH
T ss_pred hhhhhCCCCCChHH
Confidence 99999999998544
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.9e-35 Score=245.27 Aligned_cols=97 Identities=36% Similarity=0.711 Sum_probs=89.7
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeecc-CCchhHHHHhhcCCCcccccc
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVL 83 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~ldli~~~p~GllsiL 83 (108)
+||||||||||.|+.||||||||||||||||++|++++|..+|++|.+|||+|..++| .||++|+|||++ |+|||+||
T Consensus 456 ~IGvLDI~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lL 534 (783)
T 4db1_A 456 FIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSIL 534 (783)
T ss_dssp EEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHH
T ss_pred eEEEeccccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhh
Confidence 7999999999999999999999999999999999999999999999999999999999 599999999996 89999999
Q ss_pred hHhhcccCcc---hhHHHhhhh
Q psy18190 84 DDQAKRNREN---LLNEKREKK 102 (108)
Q Consensus 84 Dee~~~pk~~---~~~~~~~~~ 102 (108)
||||++|+++ ++.++.+.|
T Consensus 535 DEec~~p~~tD~tf~~kl~~~~ 556 (783)
T 4db1_A 535 EEECMFPKATDMTFKAKLFDNH 556 (783)
T ss_dssp CC-TTCTTCCHHHHHHHHHHHH
T ss_pred hHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999988 445665544
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=6.4e-35 Score=243.56 Aligned_cols=91 Identities=41% Similarity=0.765 Sum_probs=87.7
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeecc-CCchhHHHHhhcCCCcccccc
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVL 83 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~ldli~~~p~GllsiL 83 (108)
++|+|||||||.|+.|||||||||||||+||++|++++|..||++|.+|||+|.+++| .||++|+|||++ |.|||+||
T Consensus 455 ~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslL 533 (837)
T 1kk8_A 455 YIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSIL 533 (837)
T ss_dssp EEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHH
T ss_pred eEEEEecCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999 599999999997 89999999
Q ss_pred hHhhcccCcchhH
Q psy18190 84 DDQAKRNRENLLN 96 (108)
Q Consensus 84 Dee~~~pk~~~~~ 96 (108)
||||++|++++.+
T Consensus 534 DEec~~p~~tD~t 546 (837)
T 1kk8_A 534 EEECMFPKADDKS 546 (837)
T ss_dssp HHHTTCTTCCHHH
T ss_pred HHHhcCCCCChHH
Confidence 9999999998544
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=9.4e-35 Score=247.48 Aligned_cols=97 Identities=41% Similarity=0.668 Sum_probs=91.1
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeeccCCchhHHHHhhcCCCcccccch
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 84 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~~dn~~~ldli~~~p~GllsiLD 84 (108)
+||||||||||.|+.|||||||||||||+||++|++++|..++++|..|||+|.+++|.||++|+|||+++ +|||+|||
T Consensus 432 ~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLd 510 (1080)
T 2dfs_A 432 FIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLD 510 (1080)
T ss_dssp EEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHH
T ss_pred eEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Cceeeecc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999986 99999999
Q ss_pred HhhcccCcch---hHHHhhhh
Q psy18190 85 DQAKRNRENL---LNEKREKK 102 (108)
Q Consensus 85 ee~~~pk~~~---~~~~~~~~ 102 (108)
|||++|++++ +.++.+.|
T Consensus 511 ee~~~p~~tD~~f~~kl~~~~ 531 (1080)
T 2dfs_A 511 EECKMPKGSDDTWAQKLYNTH 531 (1080)
T ss_dssp HHTTSTTCCHHHHHHHHHHHH
T ss_pred ccccCCCCChHHHHHHHHHHh
Confidence 9999999985 44555444
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.4e-34 Score=244.86 Aligned_cols=98 Identities=37% Similarity=0.669 Sum_probs=91.3
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeecc-CCchhHHHHhhc--CCCcccc
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLC 81 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~ldli~~--~p~Glls 81 (108)
+||||||||||.|+.|||||||||||||+||++|++++|..+|++|..|||+|.+++| .||++|+|||++ +|+|||+
T Consensus 428 ~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~ 507 (995)
T 2ycu_A 428 FLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLA 507 (995)
T ss_dssp EEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHH
T ss_pred eEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhh
Confidence 7999999999999999999999999999999999999999999999999999999999 699999999998 4899999
Q ss_pred cchHhhcccCcchhH---HHhhhh
Q psy18190 82 VLDDQAKRNRENLLN---EKREKK 102 (108)
Q Consensus 82 iLDee~~~pk~~~~~---~~~~~~ 102 (108)
||||||++|++++.+ ++.+.|
T Consensus 508 lLdee~~~p~~tD~~f~~kl~~~~ 531 (995)
T 2ycu_A 508 LLDEECWFPKATDKSFVEKVAQEQ 531 (995)
T ss_dssp HHHHSSSSTTCCHHHHHHHHHHHH
T ss_pred hhHHHhcCCCCchHHHHHHHHHhc
Confidence 999999999998544 555444
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=4.9e-34 Score=241.84 Aligned_cols=92 Identities=41% Similarity=0.727 Sum_probs=88.3
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeecc-CCchhHHHHhhc-CCCccccc
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCV 82 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~ldli~~-~p~Gllsi 82 (108)
+||||||||||.|+.|||||||||||||+||++|++++|..+|++|..|||+|.+++| .||++|+|||++ +|+|||+|
T Consensus 449 ~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~l 528 (1010)
T 1g8x_A 449 FIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILAL 528 (1010)
T ss_dssp EEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHH
T ss_pred eeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehh
Confidence 7999999999999999999999999999999999999999999999999999999999 599999999998 49999999
Q ss_pred chHhhcccCcchhH
Q psy18190 83 LDDQAKRNRENLLN 96 (108)
Q Consensus 83 LDee~~~pk~~~~~ 96 (108)
|||||++|++++.+
T Consensus 529 Ldee~~~p~~td~~ 542 (1010)
T 1g8x_A 529 LDEQSVFPNATDNT 542 (1010)
T ss_dssp HHHHTTSSSCCHHH
T ss_pred hhHHhCCCCCChHH
Confidence 99999999998544
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=3.7e-34 Score=245.19 Aligned_cols=98 Identities=37% Similarity=0.673 Sum_probs=90.0
Q ss_pred ccccccccCcCCCCCcchhhhHhhhhhhhHHHHHHHhhHHHHHHhhhhcCccceeecc-CCchhHHHHhhcC--CCcccc
Q psy18190 5 LCGSVRLKKKKKKKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLC 81 (108)
Q Consensus 5 ~~g~ld~~gfe~~~~N~feqlciN~anE~l~~~~~~~~f~~~~~ey~~Egi~~~~~~~-~dn~~~ldli~~~--p~Glls 81 (108)
+||||||||||.|+.|||||||||||||+||++|++++|..++++|..|||+|.+++| .||++|+|||++| |+|||+
T Consensus 459 ~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~ 538 (1184)
T 1i84_S 459 FLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLA 538 (1184)
T ss_dssp EEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHH
T ss_pred eEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchh
Confidence 7999999999999999999999999999999999999999999999999999999999 6999999999973 349999
Q ss_pred cchHhhcccCcch---hHHHhhhh
Q psy18190 82 VLDDQAKRNRENL---LNEKREKK 102 (108)
Q Consensus 82 iLDee~~~pk~~~---~~~~~~~~ 102 (108)
||||||++|++++ +.++...+
T Consensus 539 lLdee~~~p~~td~~~~~kl~~~~ 562 (1184)
T 1i84_S 539 LLDEECWFPKATDTSFVEKLIQEQ 562 (1184)
T ss_dssp HHHHTTSCTTCCHHHHHHHHHHHT
T ss_pred hhhhhhCCCCCChHHHHHHHHHHh
Confidence 9999999999984 44555444
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=36.23 E-value=8.8 Score=21.39 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.7
Q ss_pred CchhHHHHhhcCCCcccccchHhhcc
Q psy18190 64 DNTLCLQLVEGKPNGLLCVLDDQAKR 89 (108)
Q Consensus 64 dn~~~ldli~~~p~GllsiLDee~~~ 89 (108)
.|...+|++.-+..|+=..|.|+|.+
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhc
Confidence 57889999998888999999999876
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=30.91 E-value=11 Score=21.16 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.6
Q ss_pred CchhHHHHhhcCCCcccccchHhhcc
Q psy18190 64 DNTLCLQLVEGKPNGLLCVLDDQAKR 89 (108)
Q Consensus 64 dn~~~ldli~~~p~GllsiLDee~~~ 89 (108)
.|...+|++.-+..|+=..|.|+|.+
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchhc
Confidence 57889999998888999999999876
Done!