RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18190
         (108 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 71.6 bits (175), Expect = 1e-16
 Identities = 31/70 (44%), Positives = 45/70 (64%)

Query: 22  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 81
           FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+ 
Sbjct: 390 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 449

Query: 82  VLDDQAKRNR 91
           +LD+     +
Sbjct: 450 LLDEACLIAK 459


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 67.1 bits (163), Expect = 5e-15
 Identities = 31/77 (40%), Positives = 43/77 (55%)

Query: 17  KKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 76
                FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP
Sbjct: 421 FDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKP 480

Query: 77  NGLLCVLDDQAKRNREN 93
            G+  +L+++    +  
Sbjct: 481 MGIFSILEEECMFPKAT 497


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 65.5 bits (159), Expect = 1e-14
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 18  KKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG-- 74
           +   FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E   
Sbjct: 394 EINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPT 453

Query: 75  KPNGLLCVLDDQAKRNREN 93
            P G+L +LD++    +  
Sbjct: 454 NPPGVLALLDEECWFPKAT 472


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 65.5 bits (159), Expect = 2e-14
 Identities = 33/75 (44%), Positives = 44/75 (58%)

Query: 17  KKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 76
                FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP
Sbjct: 419 FDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKP 478

Query: 77  NGLLCVLDDQAKRNR 91
            G+L +L+++    +
Sbjct: 479 MGILSILEEECMFPK 493


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 64.8 bits (157), Expect = 3e-14
 Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 22  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 81
           FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L 
Sbjct: 387 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 445

Query: 82  VLDDQAKRNR 91
           +LD++ K  +
Sbjct: 446 LLDEECKMPK 455


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 60.5 bits (146), Expect = 9e-13
 Identities = 37/71 (52%), Positives = 49/71 (69%), Gaps = 2/71 (2%)

Query: 18  KKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-K 75
           K   FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +
Sbjct: 415 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQ 474

Query: 76  PNGLLCVLDDQ 86
           P G+L +LD+Q
Sbjct: 475 PPGILALLDEQ 485


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 25.6 bits (56), Expect = 1.3
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 27  INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 65
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


>d2fj6a1 a.60.15.1 (A:1-74) Hypothetical protein YozE {Bacillus
          subtilis [TaxId: 1423]}
          Length = 74

 Score = 24.0 bits (52), Expect = 2.7
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 17 KKKEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 53
          K   D+ ++  +Y   +  Y      F    ++Y  E
Sbjct: 35 KTSTDYHEIS-SYLELNADYLHTMATFDEAWDQYESE 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 408,238
Number of extensions: 17776
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 21
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)