BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18191
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA-EIGSHRILLPAGS 187
Y+ PRI EHP VV ++EP TLNCK +G PEP IEW+KDG VS E SHR+ G+
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
LFF + GKK+ D G YWCVA+N +G A S++A+L +A
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 127 DGYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDG----SLVSAEIG-SHR 180
D +RV P V + E L C G PEP + W KDG L + G S R
Sbjct: 109 DDFRV-----EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR 163
Query: 181 ILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ + G +S V D G Y C+A+N +G S A L V K
Sbjct: 164 VRIVDGGNLLISNVE---PIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA-EIGSHRILLPAGS 187
Y+ PRI EHP VV ++EP TLNCK +G PEP IEW+KDG VS E SHR+ G+
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
LFF + GKK+ D G YWCVA+N +G A S++A+L +A
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 127 DGYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDG----SLVSAEIG-SHR 180
D +RV P V + E L C G PEP + W KDG L + G S R
Sbjct: 109 DDFRV-----EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR 163
Query: 181 ILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ + G +S V D G Y C+A+N +G S A L V K
Sbjct: 164 VRIVDGGNLLISNVE---PIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 70/99 (70%), Gaps = 4/99 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
PRI EHP+ +V + EP TLNCKA+G P P IEWYK G V + SHR+LLP+GSL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDVA 226
FFL +VHG+K D GVY CVARN LG A S +A+L+VA
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 136 EHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLV 194
++P+ +V EP + C+ G+PEP I W KDGS + + RI + G L ++
Sbjct: 116 QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK--DERITIRGGKL----MI 169
Query: 195 HGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ +D+G Y CV N +G S+ A L V
Sbjct: 170 TYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 4/98 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
PRI EHP+ +V + EP TLNCKA+G P P IEWYK G V + SHR+LLP+GSL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 189 FFLSLVHGKKDT-DSGVYWCVARNELGFARSKNATLDV 225
FFL +VHG+K D GVY CVARN LG A S +A+L+V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
P I P VV R T+ C A G P+P I W+KD V + RI L +G+L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL-- 166
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ ++TD G Y CVA N G S A L V
Sbjct: 167 --QIESSEETDQGKYECVATNSAGVRYSSPANLYV 199
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE-IGSHRILLPAG 186
G PR + P + + C+A G P+PR+ W K G V+++ + AG
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELG 214
++ + + +D + VY CVA+N +G
Sbjct: 63 AVLRIQPLRTPRDEN--VYECVAQNSVG 88
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
P I P VV R T+ C A G P+P I W+KD V + RI L +G+L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL-- 166
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ ++TD G Y CVA N G S A L V
Sbjct: 167 --QIESSEETDQGKYECVATNSAGVRYSSPANLYV 199
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE-IGSHRILLPAG 186
G PR + P + + C+A G P+PR+ W K G V+++ + AG
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELG 214
++ + + +D + VY CVA+N +G
Sbjct: 63 AVLRIQPLRTPRDEN--VYECVAQNSVG 88
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
PR + P S + + C A G P P ++W + ++ E +P G L
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD-----MPVGR-NVL 259
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARS 218
L K DS Y CVA + LG +
Sbjct: 260 ELTDVK---DSANYTCVAMSSLGVIEA 283
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
P I P VV R T+ C A G P+P I W+KD V + RI L +G+L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGAL-- 166
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ ++TD G Y CVA N G S A L V
Sbjct: 167 --QIESSEETDQGKYECVATNSAGVRYSSPANLYV 199
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE-IGSHRILLPAG 186
G PR + P + + C+A G P+PR+ W K G V+++ + AG
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELG 214
++ + + +D + VY CVA+N +G
Sbjct: 63 AVLRIQPLRTPRDEN--VYECVAQNSVG 88
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
P I P VV R T+ C A G P+P I W+KD V + RI L +G L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGL-- 166
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ ++TD G Y CVA N G S A L V
Sbjct: 167 --QIESSEETDQGKYECVASNSAGVRYSSPANLYV 199
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 153 CKADGYPEPRIEWYKDGSLVSAE-IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
C+A G P+PR+ W K G V+++ + AG++ + + +D + +Y CVA+N
Sbjct: 28 CQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDEN--IYECVAQN 85
Query: 212 ELG 214
G
Sbjct: 86 PHG 88
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P+IT P + + L C G P+P + W K S + S +L +GSL
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRE--NSRIAVLESGSLR-- 156
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+H + D+G Y CVA+N LG A SK L+V
Sbjct: 157 --IHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
+ P IT + E T C + YP+P I W ++ L+ + I L
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
LS+ +D+D G+Y C A N +G A L V K
Sbjct: 66 ILSV----EDSDDGIYCCTANNGVGGAVESCGALQVKMK 100
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
P I P VV R T+ C A G P+P I W+KD V + RI L + S+
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA 168
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
L + +++D G Y CVA N G S A L V G
Sbjct: 169 LQ-IEQSEESDQGKYECVATNSAGTRYSAPANLYVRG 204
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
PR T P + C+A G P P+I W K G VS + I GS L
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ-RFEVIEFDDGSGSVL 65
Query: 192 SLVHGKKDTDSGVYWCVARNELG 214
+ + D +Y CVA N +G
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVG 88
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P IT+ P + V+ + CKA G P P I W K+ + V ++ + R L G FL
Sbjct: 113 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV--DMSNPRYSLKDG---FL 167
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + +++ D G Y CVA N +G SK L V
Sbjct: 168 QIENSREE-DQGKYECVAENSMGTEHSKATNLYV 200
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I P + V + C A G P P I W K+G VS + +L G + L
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + D Y CVA N +G A S +ATL +
Sbjct: 69 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTI 102
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P IT+ P + V+ + CKA G P P I W K+ + V ++ + R L G FL
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV--DMSNPRYSLKDG---FL 165
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + +++ D G Y CVA N +G SK L V
Sbjct: 166 QIENSREE-DQGKYECVAENSMGTEHSKATNLYV 198
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I P + V + C A G P P I W K+G VS + +L G + L
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + D Y CVA N +G A S +ATL +
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTI 100
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
P I P VV + T+ C A G P+P I W+KD V + RI L +G+L
Sbjct: 109 PSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGAL-- 166
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ +++D G Y CVA N G S A L V
Sbjct: 167 --QIESSEESDQGKYECVATNSAGTRYSAPANLYV 199
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 153 CKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212
C+A G P+PRI W K G VS++ I G+ L + + D +Y C A N
Sbjct: 28 CQATGEPKPRITWMKKGKKVSSQ-RFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNS 86
Query: 213 LG 214
LG
Sbjct: 87 LG 88
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
P I P VV + T+ C A G P+P I W+KD V + RI L +G+L
Sbjct: 110 PTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGAL-- 167
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ +++D G Y CVA N G S A L V
Sbjct: 168 --QIESSEESDQGKYECVATNSAGTRYSAPANLYV 200
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 153 CKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212
C+A G P+PRI W K G VS++ I G+ L + + D +Y C A N
Sbjct: 29 CQATGEPKPRITWMKKGKKVSSQR-FEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNS 87
Query: 213 LG 214
LG
Sbjct: 88 LG 89
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF----L 191
EH +A+ EP TL CK DG PE RI WYK+ + + + PA + F
Sbjct: 13 EHVEAAI---GEPITLQCKVDGTPEIRIAWYKEHTKLRS--------APAYKMQFKNNVA 61
Query: 192 SLVHGKKD-TDSGVYWCVARNELGFARS 218
SLV K D +D G Y C A N +G S
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVAS 89
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD 199
S +V + E T CK G PE ++ WYKD + + E R+ S+ L + + +
Sbjct: 300 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ-ESSKFRMSF-VESVAVLEMYNLSVE 357
Query: 200 TDSGVYWCVARN 211
DSG Y C A N
Sbjct: 358 -DSGDYTCEAHN 368
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 148 PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC 207
P C+ +G ++ WYKDG L+ + + ++ L ++ + + G Y C
Sbjct: 118 PVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFI--HNVATLQILQTDQ-SHVGQYNC 174
Query: 208 VARNELGFARS 218
A N LG A S
Sbjct: 175 SASNPLGTASS 185
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH--GKKDTDSGVYWCV 208
L C+ G P ++ W+KD + + ++I+ S FL+ +H D G Y C
Sbjct: 404 LECELQGTPPFQVSWHKDKRELRSG-KKYKIM----SENFLTSIHILNVDSADIGEYQCK 458
Query: 209 ARNELG 214
A N++G
Sbjct: 459 ASNDVG 464
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLFFLSLVH 195
P S + E T C G +I W KD + G++++ L +L L +
Sbjct: 204 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-GNYKMTLVENTATLTVLKVTK 262
Query: 196 GKKDTDSGVYWCVARNELG 214
G D+G Y C A N G
Sbjct: 263 G----DAGQYTCYASNVAG 277
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS---LF 189
++ P V + +P LNC +G EP I+W KDG++V ++ +P +
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQ---NLDQLYIPVSEQHWIG 60
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
FLSL + +D+G YWC + S+ L V G
Sbjct: 61 FLSL-KSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 117 SLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAE 175
S P++ V G VP T P VP + P L+C+A G PEP I W++
Sbjct: 88 SQPVWLTVEG----VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-------- 135
Query: 176 IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
G+ +I PA S L++ T S + C A N G A S+ AT+
Sbjct: 136 -GTTKIGGPAPSPSVLNVT---GVTQSTXFSCEAHNLKGLASSRTATV 179
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 137 HPASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH 195
P+ AV R LNC A+ P I+W KDG +++ + + LP GSL +++H
Sbjct: 27 EPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILH 86
Query: 196 GKKDT-DSGVYWCVAR-NELGFARSKNATLDVAG 227
+ D G+Y C A + G S+ A + VAG
Sbjct: 87 SRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS-LFF 190
P HP++ C G P P + W K+G +V I S + GS L
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV---IPSDYFQIVGGSNLRI 369
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARS 218
L +V +D G Y CVA NE G A+S
Sbjct: 370 LGVVK----SDEGFYQCVAENEAGNAQS 393
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 122 PGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI 181
PG+H Y + R P++ + + L C GYP P W + ++ ++ S +
Sbjct: 216 PGLHRQLYFLQR----PSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVI--QLRSKKY 269
Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVA--RNE 212
L GS +S V D DSG Y CV +NE
Sbjct: 270 SLLGGSNLLISNV---TDDDSGTYTCVVTYKNE 299
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHR-ILLPAGSLFFLSLVHGKKDTDSGVY 205
+ L C+ G P P I W K+ ++ G R ++LP+G+L L G DSGVY
Sbjct: 137 DTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPG----DSGVY 192
Query: 206 WCVARN 211
C ARN
Sbjct: 193 RCSARN 198
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP-AGSLFFL 191
R + +A + TL C ADG+PEP + W KDG + E + GS +
Sbjct: 15 RARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELII 74
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
V +D Y C+A N+ G ++AT+
Sbjct: 75 KKVDK---SDEAEYICIAENKAG---EQDATI 100
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD 199
+A R E T +C+A G PEP I W+++G L+ E IL GS L+ V +
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLI--EENEKYIL--KGSNTELT-VRNIIN 161
Query: 200 TDSGVYWCVARNELGFARSKNATLDV 225
+D G Y C A N+ G K A L V
Sbjct: 162 SDGGPYVCRATNKAG-EDEKQAFLQV 186
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD 199
+A R E T +C+A G PEP I W+++G L+ + + +L GS L+ V +
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE---NEKYILK-GSNTELT-VRNIIN 257
Query: 200 TDSGVYWCVARNELGFARSKNATLDV 225
+D G Y C A N+ G K A L V
Sbjct: 258 SDGGPYVCRATNKAG-EDEKQAFLQV 282
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 147 EPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVY 205
E C A G PE I+WY G + I + R+++ + ++ D+G+Y
Sbjct: 20 ESKFFTCTAIGEPES-IDWYNPQGEKI---ISTQRVVVQKEGVRSRLTIYNANIEDAGIY 75
Query: 206 WCVARNELGFARSKNATLDVAGKIS 230
C A + G + L++ K++
Sbjct: 76 RCQATDAKGQTQEATVVLEIYQKLT 100
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD 199
+A R E T +C+A G PEP I W+++G L+ + + GS L+ V +
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIE----ENEKYILKGSNTELT-VRNIIN 67
Query: 200 TDSGVYWCVARNELGFARSKNATLDV 225
+D G Y C A N+ G K A L V
Sbjct: 68 SDGGPYVCRATNKAG-EDEKQAFLQV 92
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 149 TTLNCKADGYPEPRIEWYK--DGSLVSAEIGSHRILLPAGSLFFLSLVHGK--KDTDSGV 204
TL C A+G P P I W + DG + S + S +H K K +DSG
Sbjct: 112 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 171
Query: 205 YWCVARNELGFARSKNATLDV 225
Y C A + +G K+ LD+
Sbjct: 172 YDCEAASRIG-GHQKSMYLDI 191
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
PR + P + + ++ K G P P + WY +G V ++ H++++ L L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD-DLHKMIVSEKGLHSL 64
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ + +D+G Y CVA+N G A + LDV K
Sbjct: 65 -IFEVVRASDAGAYACVAKNRAGEA-TFTVQLDVLAK 99
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 132 PRITEHPASAVVP---RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-SHRILLPAGS 187
P + P+ + P + L+C+ G P+P I W +G+ V +IG R + GS
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV--DIGMDFRYSVVDGS 63
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
L + + K D+G Y C+A N G S+ A L A
Sbjct: 64 LL---INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA 99
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDS 202
V E CKA+G P+P W K+G + + RI + G+L +++V+ +D+
Sbjct: 307 VAMEESVFWECKANGRPKPTYRWLKNGDPL---LTRDRIQIEQGTL-NITIVN---LSDA 359
Query: 203 GVYWCVARNELGFARSKNATLDVAGK 228
G+Y CVA N+ G S +A L V +
Sbjct: 360 GMYQCVAENKHGVIFS-SAELSVIAE 384
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 143 VPRHEPTT--LNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD 199
VP + TT L C A G P P I W + DG ++ + H+ S L + + +++
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK------SNGILEIPNFQQE 268
Query: 200 TDSGVYWCVARNELG 214
D+G Y CVA N G
Sbjct: 269 -DAGSYECVAENSRG 282
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 132 PRITEHPASAVVP---RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-SHRILLPAGS 187
P + P+ + P + L+C+ G P+P I W +G+ V +IG R + GS
Sbjct: 5 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV--DIGMDFRYSVVDGS 62
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
L + + K D+G Y C+A N G S+ A L A
Sbjct: 63 LL---INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA 98
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDS 202
V E CKA+G P+P W K+G + + RI + G+L +++V+ +D+
Sbjct: 306 VAMEESVFWECKANGRPKPTYRWLKNGDPL---LTRDRIQIEQGTL-NITIVN---LSDA 358
Query: 203 GVYWCVARNELGFARSKNATLDVAGK 228
G+Y CVA N+ G S +A L V +
Sbjct: 359 GMYQCVAENKHGVIFS-SAELSVIAE 383
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 143 VPRHEPTT--LNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD 199
VP + TT L C A G P P I W + DG ++ + H+ S L + + +++
Sbjct: 214 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK------SNGILEIPNFQQE 267
Query: 200 TDSGVYWCVARNELG 214
D+G Y CVA N G
Sbjct: 268 -DAGSYECVAENSRG 281
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
G+R P + P V + ++CK G P P + W DG V + +H++L+
Sbjct: 7 GFR-PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD-SAHKMLVRENG 64
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELG 214
+ L ++ D+G+Y C+A N G
Sbjct: 65 VHSL-IIEPVTSRDAGIYTCIATNRAG 90
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 152 NCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
+C A G P P + W +DG ++++ +RI + G L F LV DSG+Y CVA N
Sbjct: 315 SCVASGKPRPAVRWLRDGQPLASQ---NRIEVSGGELRFSKLVL----EDSGMYQCVAEN 367
Query: 212 ELG 214
+ G
Sbjct: 368 KHG 370
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 132 PRITEHPASAVVPR---HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
P E PA + P E TL C+A P W +G+ + S R L AG L
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDS-RYRLVAGDL 63
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
+ V K D+G Y CVA N G S+ A+L
Sbjct: 64 VISNPVKAK---DAGSYQCVATNARGTVVSREASL 95
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
PA + TL C A G P P+I+W K DGS S + S +L F
Sbjct: 214 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDF------- 266
Query: 197 KKDTDSGVYWCVARNELG 214
D G Y C A N G
Sbjct: 267 ---EDEGTYECEAENIKG 281
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
G P E + V TL CK G+P+P ++WY+ G + A+ +RI G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L ++ D D+ VY A N+ G + S A+L+V
Sbjct: 61 YHQL-IIASVTDDDATVYQVRATNQ-GGSVSGTASLEV 96
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+P+ E + R E ++ G P+P I W K L+ G +++++ F
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQVIVTRS---F 159
Query: 191 LSLV--HGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
SLV +G + D+G Y A+N G + K LDVA
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQ-KTVELDVA 196
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
G P E + V TL CK G+P+P ++WY+ G + A+ +RI G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L ++ D D+ VY A N+ G + S A+L+V
Sbjct: 61 YHQL-IIASVTDDDATVYQVRATNQ-GGSVSGTASLEV 96
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+P+ E + R E ++ G P+P I W K L+ G +++++ + F
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQVIV---TRSF 159
Query: 191 LSLV--HGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
SLV +G + D+G Y A+N G + K LDVA
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQ-KTVELDVA 196
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
+ TL C ADG+PEP + W KDG + E + + L++ + K+ D Y
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN-DEAEYV 270
Query: 207 CVARNELG 214
C+A N+ G
Sbjct: 271 CIAENKAG 278
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 132 PRITEHPASAVVPRH---EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
P + P S + P E L C+A P W +G+ + E GS L+
Sbjct: 4 PVFEDQPLSVLFPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGN-- 61
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
L +++ K D+GVY C+A N +G S+ A L
Sbjct: 62 --LVIMNPTKAQDAGVYQCLASNPVGTVVSREAIL 94
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 153 CKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212
C A G P P + W ++G ++++ +R+ + AG L F L DSG+Y CVA N+
Sbjct: 315 CAAAGKPRPTVRWLRNGEPLASQ---NRVEVLAGDLRFSKL----SLEDSGMYQCVAENK 367
Query: 213 LG 214
G
Sbjct: 368 HG 369
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
PA + TL C A G P PRI+W K DGSL S + + L S+ F
Sbjct: 213 PAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSL-SPQWTTAEPTLQIPSVSF------ 265
Query: 197 KKDTDSGVYWCVARNELG 214
D G Y C A N G
Sbjct: 266 ---EDEGTYECEAENSKG 280
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P E + V TL CK G+P+P ++WY+ G + A+ +RI G L
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ D D+ VY A N+ G + S A+L+V
Sbjct: 63 -IIASVTDDDATVYQVRATNQ-GGSVSGTASLEV 94
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+P+ E + R E ++ G P+P I W K L+ G +++++ F
Sbjct: 102 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN-GHYQVIVTRS---F 157
Query: 191 LSLV--HGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
SLV +G + D+G Y A+N G + K LDVA
Sbjct: 158 TSLVFPNGVERKDAGFYVVCAKNRFGIDQ-KTVELDVA 194
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 118 LPLFPGVHGDGYRVPRITEHPASA-VVPRHEPTTLNCKADGYPEPRIEWYKDGSLVS-AE 175
+P+ P + + + P IT+ A +V + + C+A G P P W ++ + A+
Sbjct: 3 IPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAK 62
Query: 176 IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
+ +G+L G+ + G Y C ARN+ G A S L V+
Sbjct: 63 DPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVS 113
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK 198
+S +V R L C A G P P I WYK G + ++ A + +S
Sbjct: 230 SSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVS------ 283
Query: 199 DTDSGVYWCVARNELGFAR 217
+ DSG Y+C+A N++G R
Sbjct: 284 EEDSGEYFCLASNKMGSIR 302
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS-LVSAEIGSHRILLPAGSLFF 190
P + P + ++ E L C+A+G P+P ++W +G L SA +R + +F
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFR 372
Query: 191 LSLVHGKKDTDSGVYWCVARNELGF--ARSKNATLDV 225
+ + + VY C NE G+ A + + LDV
Sbjct: 373 DTQISSR-----AVYQCNTSNEHGYLLANAFVSVLDV 404
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
E L+C+ G P P I+WY+ G + I S + + + V ++ D GVY
Sbjct: 23 EAAQLSCQIVGRPLPDIKWYRFGKEL---IQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 207 CVARNELGFARSKNATL 223
C+A NE+G + + L
Sbjct: 80 CIATNEVGEVETSSKLL 96
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
Y +P I + A+V E + C GYP I W +D + I + + P G+L
Sbjct: 525 YGLPYIRQMEKKAIVA-GETLIVTCPVAGYPIDSIVWERDNRALP--INRKQKVFPNGTL 581
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ ++++D Y CVA+N+ G+ S +L+V
Sbjct: 582 IIENV---ERNSDQATYTCVAKNQEGY--SARGSLEV 613
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI----GSHRILLP 184
Y PR P + + CKADG+P+P++ W K E S I +
Sbjct: 712 YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVE 771
Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
G+L V + T+ G Y C A N +G S + V
Sbjct: 772 EGTLH----VDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 151 LNCKADGYPEPRIEWYK--DGSL-VSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC 207
L C A GYP P WYK +G+ A + + R+ +G+L V DSG Y C
Sbjct: 268 LLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV----EDSGKYLC 323
Query: 208 VARNELGFARSKNATLDVAGKISTATD 234
V N +G S L V +S D
Sbjct: 324 VVNNSVG-GESVETVLTVTAPLSAKID 349
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCV 208
+ CKA G P P I W + ++ R + G L F +++ + VY C+
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118
Query: 209 ARNELGFARSKNA 221
ARN+ G S++
Sbjct: 119 ARNQFGSIISRDV 131
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSA----EIGSHRILLPAGSLFFLSL--VHGKKDTDSGV 204
L C A G P P I W DG ++ ++G + + + + +L++ VH D G+
Sbjct: 449 LKCVAGGNPTPEISWELDGKKIANNDRYQVGQY-VTVNGDVVSYLNITSVHA---NDGGL 504
Query: 205 YWCVARNELGFARSKNATLDVAG 227
Y C+A++++G A +A L+V G
Sbjct: 505 YKCIAKSKVGVAE-HSAKLNVYG 526
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK 197
P + V P C+ G P + W KDG IG +L S+
Sbjct: 350 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK----AIGHSESVLRIESV--------- 396
Query: 198 KDTDSGVYWCVARNELGFARSKNATLDVAGK 228
K D G+Y C RN+ A + +A L + G+
Sbjct: 397 KKEDKGMYQCFVRNDRESAEA-SAELKLGGR 426
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK--DGSL-VSAEIGSHRILLPAG 186
R P + + P +V +L C A G+P P WYK +G+ A + + R+ +G
Sbjct: 213 RTPALVQKPLELMVAH--TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG 270
Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATD 234
+L V DSG Y CV N +G S L V +S D
Sbjct: 271 TLIIKDAVV----EDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKID 313
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCV 208
+ CKA G P P I W + ++ R + G L F +++ + VY C+
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 209 ARNELGFARSKNA 221
ARN+ G S++
Sbjct: 84 ARNQFGSIISRDV 96
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK 197
P + V P C+ G P + W KDG IG +L S+
Sbjct: 314 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKA----IGHSESVLRIESV--------- 360
Query: 198 KDTDSGVYWCVARNE 212
K D G+Y C RN+
Sbjct: 361 KKEDKGMYQCFVRND 375
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK--DGSL-VSAEIGSHRILLPAG 186
R P + + P +V +L C A G+P P WYK +G+ A + + R+ +G
Sbjct: 219 RTPALVQKPLELMVAH--TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG 276
Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATD 234
+L V DSG Y CV N +G S L V +S D
Sbjct: 277 TLIIKDAVV----EDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKID 319
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCV 208
+ CKA G P P I W + ++ R + G L F +++ + VY C+
Sbjct: 30 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 89
Query: 209 ARNELGFARSKNA 221
ARN+ G S++
Sbjct: 90 ARNQFGSIISRDV 102
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK 197
P + V P C+ G P + W KDG IG +L S+
Sbjct: 320 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKA----IGHSESVLRIESV--------- 366
Query: 198 KDTDSGVYWCVARNE 212
K D G+Y C RN+
Sbjct: 367 KKEDKGMYQCFVRND 381
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I V KA G P P W KDG ++ + G +++ G FFL
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT-QGGKYKLSEDKGG-FFL 64
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARS 218
+H +DSG+Y C +N G S
Sbjct: 65 E-IHKTDTSDSGLYTCTVKNSAGSVSS 90
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P I W K+G E IG ++ SL S+V +
Sbjct: 135 VPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVV----PS 190
Query: 201 DSGVYWCVARNELGFARSKNATLDV 225
D G Y CV N+ G R + TLDV
Sbjct: 191 DRGNYTCVVENKFGSIR-QTYTLDV 214
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH-----RILLPAGS----- 187
PA+ +CK +P I+W K + +++G +L AG+
Sbjct: 229 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK 288
Query: 188 -LFFLSLVHGKKDTDSGVYWCVARNELGFA 216
L LSL H D+G Y C+A N +GF+
Sbjct: 289 ELEVLSL-HNVTFEDAGEYTCLAGNSIGFS 317
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P + W K+G E IG +++ SL S+V +
Sbjct: 31 VPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV----PS 86
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 87 DKGNYTCVVENEYG 100
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P I W K+G E IG ++ SL S+V +
Sbjct: 27 VPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVV----PS 82
Query: 201 DSGVYWCVARNELGFARSKNATLDV 225
D G Y CV N+ G R + TLDV
Sbjct: 83 DRGNYTCVVENKFGSIR-QTYTLDV 106
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P + W K+G E IG +++ SL S+V +
Sbjct: 31 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV----PS 86
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 87 DKGNYTCVVENEYG 100
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P + W K+G E IG +++ SL S+V +
Sbjct: 25 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV----PS 80
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 81 DKGNYTCVVENEYG 94
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P + W K+G E IG +++ SL S+V +
Sbjct: 24 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV----PS 79
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 80 DKGNYTCVVENEYG 93
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P + W K+G E IG +++ SL S+V +
Sbjct: 20 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV----PS 75
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 76 DKGNYTCVVENEYG 89
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P IT + + E ++C A G P P+I W+KD + + G I+L G+ L
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG---IVLKDGNR-NL 66
Query: 192 SLVHGKKDTDSGVYWCVARNELGFAR 217
++ +K+ D G+Y C A + LG A+
Sbjct: 67 TIRRVRKE-DEGLYTCQACSVLGCAK 91
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P + W K+G E IG +++ SL S+V +
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV----PS 78
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 79 DKGNYTCVVENEYG 92
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG--S 187
R +IT +P S V + L C+A G+P + +W+K ++ EI P G S
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFK----MNKEI-------PNGNTS 65
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
+ VH K D+G Y C N F S+ + LDV
Sbjct: 66 ELIFNAVHVK---DAGFYVCRVNNNFTFEFSQWSQLDVC 101
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
+I P S + L C A G P P +W+K+ ++ E ++P ++
Sbjct: 120 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-KKLYMVP-----YVD 173
Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L H G YWC N+ SK + +
Sbjct: 174 LEH------QGTYWCHVYNDRDSQDSKKVEIII 200
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P + W K+G E IG +++ SL S+V +
Sbjct: 22 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV----PS 77
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 78 DKGNYTCVVENEYG 91
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
RI P S V E +C DG P P + W + G ++S S F +S
Sbjct: 10 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 69
Query: 193 LVHGKKDTDSGVYWCVARNELG 214
V +D G Y V N G
Sbjct: 70 SVQA---SDEGNYSVVVENSEG 88
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P + W K+G E IG +++ SL S+V +
Sbjct: 21 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV----PS 76
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 77 DKGNYTCVVENEYG 90
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P + W K+G E IG +++ SL S+V +
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV----PS 78
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 79 DKGNYTCVVENEYG 92
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
RI P S V E +C DG P P + W + G ++S S F +S
Sbjct: 16 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEIS 75
Query: 193 LVHGKKDTDSGVYWCVARNELG 214
V +D G Y V N G
Sbjct: 76 SVQA---SDEGNYSVVVENSEG 94
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210
L C G P P + W K G ++A S R+ PA L+ TD+GVY C AR
Sbjct: 33 LKCVVLGEPPPVVVWEKGGQQLAA---SERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 89
Query: 211 N 211
N
Sbjct: 90 N 90
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210
L C G P P + W K G ++A S R+ PA L+ TD+GVY C AR
Sbjct: 34 LKCVVLGEPPPVVVWEKGGQQLAA---SERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 90
Query: 211 N 211
N
Sbjct: 91 N 91
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P + W K+G E IG +++ SL S+V +
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV----PS 78
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 79 DKGNYTCVVENEYG 92
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210
L C G P P + W K G ++A S R+ PA L+ TD+GVY C AR
Sbjct: 34 LKCVVLGEPPPVVVWEKGGQQLAA---SERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 90
Query: 211 N 211
N
Sbjct: 91 N 91
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP + C + G P+P + W K+G + IG +++ S+ S+V +
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVV----PS 83
Query: 201 DSGVYWCVARNELG 214
D G Y C+ NE G
Sbjct: 84 DKGNYTCIVENEYG 97
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH-----RILLPAG---SLF 189
PA+ V CK P+P I+W K + ++IG +IL AG +
Sbjct: 122 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK 181
Query: 190 FLSLVHGKKDT--DSGVYWCVARNELGFAR 217
+ ++H + + D+G Y C+A N +G +
Sbjct: 182 EMEVLHLRNVSFEDAGEYTCLAGNSIGLSH 211
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP + C + G P+P + W K+G + IG +++ S+ S+V +
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVV----PS 84
Query: 201 DSGVYWCVARNELG 214
D G Y C+ NE G
Sbjct: 85 DKGNYTCIVENEYG 98
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH-----RILLPAG---SLF 189
PA+ V CK P+P I+W K + ++IG +IL AG +
Sbjct: 123 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK 182
Query: 190 FLSLVHGKKDT--DSGVYWCVARNELGFAR 217
+ ++H + + D+G Y C+A N +G +
Sbjct: 183 EMEVLHLRNVSFEDAGEYTCLAGNSIGLSH 212
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P IT + + E ++C A G P P+I W+KD + + G I+L G+ L
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG---IVLKDGNR-NL 722
Query: 192 SLVHGKKDTDSGVYWCVARNELGFAR 217
++ +K+ D G+Y C A + LG A+
Sbjct: 723 TIRRVRKE-DEGLYTCQACSVLGCAK 747
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 157 GYPEPRIEWYKDG 169
GYP P I+WYK+G
Sbjct: 356 GYPPPEIKWYKNG 368
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P W K+G E IG +++ SL S+V +
Sbjct: 30 VPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVV----PS 85
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 86 DKGNYTCVVENEYG 99
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
P I + P + V L+C A G P P I W KDG LVS + RI L G L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ--DSRIKQLENGVL-- 64
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFA 216
+ K D+G Y C+A G A
Sbjct: 65 --QIRYAKLGDTGRYTCIASTPSGEA 88
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF--LSLVHGKKDTDSGVYWCV 208
+ CKA G P P I W + ++ R + G L F +++ + VY C+
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 209 ARNELGFARSKNA 221
ARN+ G S++
Sbjct: 84 ARNQFGSIISRDV 96
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 150 TLNCKADGYPEPRIEWYK--DGSL-VSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
+L C A YP P WYK +G+ A + + R+ +G+L V DSG Y
Sbjct: 234 SLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV----EDSGKYL 289
Query: 207 CVARNELGFARSKNATLDVAGKISTATD 234
CV N +G S L V +S D
Sbjct: 290 CVVNNSVG-GESVETVLTVTAPLSAKID 316
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK 197
P + V P C+ G P + W KDG IG +L S+
Sbjct: 317 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKA----IGHSESVLRIESV--------- 363
Query: 198 KDTDSGVYWCVARNE 212
K D G+Y C RN+
Sbjct: 364 KKEDKGMYQCFVRND 378
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP + C + G P P + W K+G + IG +++ S+ S+V +
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVV----PS 83
Query: 201 DSGVYWCVARNELG 214
D G Y C+ NE G
Sbjct: 84 DKGNYTCIVENEYG 97
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH-----RILLPAG---SLF 189
PA+ V CK P+P I+W K + ++IG +IL AG +
Sbjct: 122 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDK 181
Query: 190 FLSLVHGKKDT--DSGVYWCVARNELGFAR 217
+ ++H + + D+G Y C+A N +G +
Sbjct: 182 EMEVLHLRNVSFEDAGEYTCLAGNSIGLSH 211
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHR---ILLPAGSL 188
P IT H S + + CK+ GYP P W K + V EI + ++ +
Sbjct: 93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY 152
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFA 216
L++V+ + D G Y C A N +G A
Sbjct: 153 TELNIVNLQITEDPGEYECNATNSIGSA 180
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSL 188
+ P + + PA + + PT L C +G + + W KDG + + + + GSL
Sbjct: 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 64
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSK 219
FL + +D G Y C A G A S+
Sbjct: 65 VFLR----PQASDEGHYQCFAETPAGVASSR 91
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 132 PRITEHPASAVVPRH-EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P+ + P +V + + T+ CK G P P + W + +S G + +G
Sbjct: 309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS---GGRATVTDSG---- 361
Query: 191 LSLVHGKKDTDSGVYWCVARNELG 214
++ G K+ D G Y C A NE G
Sbjct: 362 -LVIKGVKNGDKGYYGCRATNEHG 384
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I + PA+ + L CKA G P P I W K+G + G+L
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR-DPRATIQEQGTLQIK 67
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+L + +D+G Y CVA + G S +A LDV
Sbjct: 68 NL----RISDTGTYTCVATSSSG-ETSWSAVLDV 96
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 121 FPGVHGDGY---RVPRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAE 175
FP V Y R RI + A V V C+ADG P P I W LVSA+
Sbjct: 371 FPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAK 430
Query: 176 IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214
+ P G+L V + D+G Y C+A N G
Sbjct: 431 SNGRLTVFPDGTLE----VRYAQVQDNGTYLCIAANAGG 465
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPAGSLFFLSLVHGKKDT 200
VP C A G P P W K+G E IG +++ SL S+V +
Sbjct: 23 VPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVV----PS 78
Query: 201 DSGVYWCVARNELG 214
D G Y CV NE G
Sbjct: 79 DKGNYTCVVENEYG 92
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKD----------GSLVSAEIGSHRILLPAGSLFFLS 192
+P + P L+C G+ PR+EW D + ++A LP G + F S
Sbjct: 16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG-ITFKS 74
Query: 193 LVHGKKDTDSGVYWCVARNELG 214
+ D+G Y C+ E G
Sbjct: 75 VTR----EDTGTYTCMVSEEGG 92
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 138 PASAVVPRHEPTTLNC-KADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
P+SA + L C + DG P W+KDG ++ S R + S + L+ G
Sbjct: 116 PSSATIGNR--AVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAF--SNSSYVLNPTTG 171
Query: 197 K------KDTDSGVYWCVARNELGFARSKNA 221
+ +D+G Y C ARN G + NA
Sbjct: 172 ELVFDPLSASDTGEYSCEARNGYGTPMTSNA 202
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 148 PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC 207
P T C+ G P+P+I W+KDG +S + + I L D D G Y
Sbjct: 24 PVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLD-DDGNYTI 82
Query: 208 VARNELG 214
+A N G
Sbjct: 83 MAANPQG 89
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 148 PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC 207
P T C+ G P+P+I W+KDG +S + + I L D D G Y
Sbjct: 25 PVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLD-DDGNYTI 83
Query: 208 VARNELG 214
+A N G
Sbjct: 84 MAANPQG 90
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKD----------GSLVSAEIGSHRILLPAGSLFFLS 192
+P + P L+C G+ PR+EW D + ++A LP G + F S
Sbjct: 15 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG-ITFKS 73
Query: 193 LVHGKKDTDSGVYWCVARNELG 214
+ D+G Y C+ E G
Sbjct: 74 VTR----EDTGTYTCMVSEEGG 91
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
R P P S V + L C+ P P++ W ++ +V + + RI L +
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMV--QFNTDRISLYQDNTG 71
Query: 190 FLS-LVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
++ L+ D+G Y A NE G + N LDV +
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVT-TCNTRLDVTAR 110
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + S V + L + G P P +++Y+DG+ + + + + G L+ L
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ--ISQEGDLYSL 161
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ + DSG Y A N +G A S A L V G+
Sbjct: 162 LIAEAYPE-DSGTYSVNATNSVGRATS-TAELLVQGE 196
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVS 173
+ P T+ S VV T G+P P + W++DG ++S
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVIS 47
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 151 LNC-KADGYPEPRIEWYKDG-SLVSAEIGSHRILL--------PAGSLFFLSLVHGKKDT 200
L C + DG P W+KDG S+++A+ R + +G L F +
Sbjct: 124 LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA----F 179
Query: 201 DSGVYWCVARNELGFA-RSKNATLD 224
DSG Y+C A+N G A RS+ A +D
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 13/81 (16%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEW-YKDGSLVS-----AEIG---SHRILLPAGSLFFLSL 193
VP +E L C G+ PR+EW + GS + ++I + R+ + + F S+
Sbjct: 13 VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSV 72
Query: 194 VHGKKDTDSGVYWCVARNELG 214
D+G Y C+ E G
Sbjct: 73 TR----KDNGEYTCMVSEEGG 89
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 117 SLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAE 175
S P + G+ G +P E P V + P L+C+A G PEP + W +D ++
Sbjct: 96 SQPGYVGLEG----LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATA 151
Query: 176 IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
G P SL V G T S + C A N G S+ AT+ V
Sbjct: 152 PGHG----PQRSLH----VPGLNKTSS--FSCEAHNAKGVTTSRTATITV 191
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD 199
S +V + E T CK G PE ++ WYKD + + E R+ S+ L + + +
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ-ESSKFRMSF-VESVAVLEMYNLSVE 165
Query: 200 TDSGVYWCVARN 211
DSG Y C A N
Sbjct: 166 -DSGDYTCEAHN 176
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLFFLSLVH 195
P S + E T C G +I W KD + G++++ L +L L +
Sbjct: 12 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-GNYKMTLVENTATLTVLKVTK 70
Query: 196 GKKDTDSGVYWCVARNELG 214
G D+G Y C A N G
Sbjct: 71 G----DAGQYTCYASNVAG 85
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH--GKKDTDSGVYWCV 208
L C+ G P ++ W+KD + + ++I+ S FL+ +H D G Y C
Sbjct: 212 LECELQGTPPFQVSWHKDKRELRSG-KKYKIM----SENFLTSIHILNVDSADIGEYQCK 266
Query: 209 ARNELG 214
A N++G
Sbjct: 267 ASNDVG 272
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD 199
S +V + E T CK G PE ++ WYKD + + E R+ S+ L + + +
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ-ESSKFRMSF-VESVAVLEMYNLSVE 165
Query: 200 TDSGVYWCVARN 211
DSG Y C A N
Sbjct: 166 -DSGDYTCEAHN 176
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLFFLSLVH 195
P S + E T C G +I W KD + G++++ L +L L +
Sbjct: 12 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-GNYKMTLVENTATLTVLKVTK 70
Query: 196 GKKDTDSGVYWCVARNELG 214
G D+G Y C A N G
Sbjct: 71 G----DAGQYTCYASNVAG 85
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH--GKKDTDSGVYWCV 208
L C+ G P ++ W+KD + + ++I+ S FL+ +H D G Y C
Sbjct: 212 LECELQGTPPFQVSWHKDKRELRSG-KKYKIM----SENFLTSIHILNVDSADIGEYQCK 266
Query: 209 ARNELG 214
A N++G
Sbjct: 267 ASNDVG 272
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + S V + L + G P P +++Y+DG+ + + + + G L+ L
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ--ISQEGDLYSL 161
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARS 218
+ + DSG Y A N +G A S
Sbjct: 162 LIAEAYPE-DSGTYSVNATNSVGRATS 187
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVS 173
+ P T+ S VV T G+P P + W++DG ++S
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVIS 47
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL-FFLSLVHGKKDTDSGVYWCVA 209
+CK +GYP+P + W+KD + V G+ +S V G D Y C A
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGD---DDAKYTCKA 117
Query: 210 RNELGFA 216
N LG A
Sbjct: 118 VNSLGEA 124
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
PRIT S VP + T P ++WY +G V + S + L
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNG--VELQESSKIHYTNTSGVLTL 66
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
++ D DSG Y V N G A S ATLDV G
Sbjct: 67 EILDCHTD-DSGTYRAVCTNYKGEA-SDYATLDVTG 100
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL-FFLSLVHGKKDTDSGVYWCVA 209
+CK +GYP+P + W+KD + V G+ +S V G D Y C A
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGD---DDAKYTCKA 117
Query: 210 RNELGFA 216
N LG A
Sbjct: 118 VNSLGEA 124
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 113 YHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV 172
Y S L P G P++ + P + + C+ YP I W++DG L+
Sbjct: 3 YAAASSALVP--RGSHMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLL 59
Query: 173 SAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214
+ S+ + S +L V + D G Y C A N +G
Sbjct: 60 PSSNYSNIKIYNTPSASYLE-VTPDSENDFGNYNCTAVNRIG 100
>pdb|2BC4|B Chain B, Crystal Structure Of Hla-Dm
pdb|2BC4|D Chain D, Crystal Structure Of Hla-Dm
Length = 211
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 147 EPTTLNCKADGY--PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG- 203
EP L C G+ E I W K+G LV +H+ P G + +L H G
Sbjct: 111 EPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGD 170
Query: 204 VYWCVARN 211
Y CV +
Sbjct: 171 TYTCVVEH 178
>pdb|4I0P|B Chain B, Hla-do In Complex With Hla-dm
pdb|4I0P|F Chain F, Hla-do In Complex With Hla-dm
Length = 191
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 147 EPTTLNCKADGY--PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG- 203
EP L C G+ E I W K+G LV +H+ P G + +L H G
Sbjct: 109 EPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGD 168
Query: 204 VYWCVARN 211
Y CV +
Sbjct: 169 TYTCVVEH 176
>pdb|3IY6|A Chain A, Variable Domains Of The Computer Generated Model (Wam) Of
Fab E Fitted Into The Cryoem Reconstruction Of The
Virus- Fab E Complex
Length = 107
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+T+ PAS + + T+NCKA + ++WY+
Sbjct: 2 MTQIPASMSISVGDRVTMNCKASQNVDSNVDWYQ 35
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA-GSLFFLSLVHGKKDTD 201
V + ++ + G P+P + W ++ V + R A G L L ++ ++ D
Sbjct: 17 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPD--QRRFAEEAEGGLCRLRILAAERG-D 73
Query: 202 SGVYWCVARNELGFARSKNATLDVAGK 228
+G Y C A NE G AR A L+V G+
Sbjct: 74 AGFYTCKAVNEYG-ARQCEARLEVRGE 99
>pdb|4FQX|D Chain D, Crystal Structure Of Hla-Dm Bound To Hla-Dr1
pdb|4GBX|D Chain D, Crystal Structure Of An Immune Complex At Ph 6.5
Length = 199
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 147 EPTTLNCKADGY--PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG- 203
EP L C G+ E I W K+G LV +H+ P G + +L H G
Sbjct: 111 EPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDWTYQTLSHLALTPSYGD 170
Query: 204 VYWCVARN 211
Y CV +
Sbjct: 171 TYTCVVEH 178
>pdb|2ARJ|L Chain L, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
pdb|2ARJ|A Chain A, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
Length = 211
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+T+ P+S V E TLNCKA I WY+
Sbjct: 4 MTQSPSSLAVSAGERVTLNCKASQNVRNNIAWYQ 37
>pdb|3HG1|E Chain E, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 244
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS 170
I + PA+ V P P +L C +G P + WY+ +
Sbjct: 4 IHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAA 40
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRI-LLPAGSLF 189
P I E PA V L C+A + W +G++++ RI +L G+L
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
F ++ D+G+Y C+ N +G + +ATL+V G
Sbjct: 401 FTNVT----VQDTGMYTCMVSNSVG-NTTASATLNVTG 433
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 147 EPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVY 205
E C A G PE I+WY G + I + R+++ + ++ D+G+Y
Sbjct: 18 ESKFFTCTAIGEPES-IDWYNPQGEKI---ISTQRVVVQKEGVRSRLTIYNANIEDAGIY 73
Query: 206 WCVARNELGFARSKNATLDVAGKIS 230
C A + G + L++ K++
Sbjct: 74 RCQATDAKGQTQEATVVLEIYQKLT 98
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD-------GSLVSAEIGSHRI 181
Y P +T P + P + T GYPE + W KD G++ ++++ + R
Sbjct: 109 YSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFW-KDGQGVPLTGNVTTSQMANERG 167
Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
L S+ L +V G +G Y C+ RN
Sbjct: 168 LFDVHSV--LRVVLGA----NGTYSCLVRN 191
>pdb|3HC7|A Chain A, Crystal Structure Of Lysin B From Mycobacteriophage D29
Length = 254
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 22/123 (17%)
Query: 104 WQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRI 163
WQ P+ Y + P++P V E + ++ + E L AD Y + +
Sbjct: 36 WQ---PIGNYPAAAFPMWPSV-----------EKGVAELILQIE---LKLDADPYADFAM 78
Query: 164 EWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
Y G++V ++ H IL P G L +H K ++W + GFA S
Sbjct: 79 AGYSQGAIVVGQVLKHHILPPTGRLH--RFLHRLKKV---IFWGNPMRQKGFAHSDEWIH 133
Query: 224 DVA 226
VA
Sbjct: 134 PVA 136
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 163 IEWYKDGSL--VSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
I WYKD S VS E S RI L+F+ K DSG Y+CV RN
Sbjct: 40 ITWYKDDSKTPVSTEQAS-RIHQHKEKLWFVP----AKVEDSGHYYCVVRN 85
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 163 IEWYKDGSL--VSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
I WYKD S VS E S RI L+F+ K DSG Y+CV RN
Sbjct: 38 ITWYKDDSKTPVSTEQAS-RIHQHKEKLWFVP----AKVEDSGHYYCVVRN 83
>pdb|3L5W|L Chain L, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L5W|A Chain A, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L7E|L Chain L, Crystal Structure Of Anti-Il-13 Antibody C836
pdb|3L7E|A Chain A, Crystal Structure Of Anti-Il-13 Antibody C836
Length = 214
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD------------GSLVSAEIGSHR 180
+IT+ P+ E TLNC+A + WY++ GS + + I S
Sbjct: 3 QITQSPSYLAASPGETITLNCRASKSISKYLAWYQEKPGKTNKLLIYSGSTLQSGIPSRF 62
Query: 181 ILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+G+ F L++ + + D +Y+C NE + L++
Sbjct: 63 SGSGSGTDFTLTISSLEPE-DFAMYFCQQHNEYPYTFGGGTKLEI 106
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 163 IEWYKDGSL--VSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
I WYKD S VS E S RI L+F+ K DSG Y+CV RN
Sbjct: 35 ITWYKDDSKTPVSTEQAS-RIHQHKEKLWFVP----AKVEDSGHYYCVVRN 80
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 163 IEWYKDGSL--VSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
I WYKD S VS E S RI L+F+ K DSG Y+CV RN
Sbjct: 38 ITWYKDDSKTPVSTEQAS-RIHQHKEKLWFVP----AKVEDSGHYYCVVRN 83
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK 197
P + + L C G P P + W K+ + A+ + AG + + ++G
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKAL-AQTDHCNLKFEAGRTAYFT-INGV 181
Query: 198 KDTDSGVYWCVARNELG 214
DSG Y V +N+ G
Sbjct: 182 STADSGKYGLVVKNKYG 198
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 147 EPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVY 205
E C A G PE I+WY G + I + R+++ + ++ D+G+Y
Sbjct: 16 ESKFFTCTAIGEPES-IDWYNPQGEKI---ISTQRVVVQKEGVRSRLTIYNANIEDAGIY 71
Query: 206 WCVARNELGFARSKNATLDV 225
C A + G + L++
Sbjct: 72 RCQATDAKGQTQEATVVLEI 91
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG 169
V + E AV P TL C+ P P+I W KDG
Sbjct: 10 EVQLVVEPEGGAVAPGGT-VTLTCEVPAQPSPQIHWMKDG 48
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH-RILLPAGSLFFLSLVHG 196
P + + L C G P P + W K+ ++++ H + AG + + ++G
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASD--DHCNLKFEAGRTAYFT-ING 285
Query: 197 KKDTDSGVYWCVARNELG 214
DSG Y V +N+ G
Sbjct: 286 VSTADSGKYGLVVKNKYG 303
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 151 LNCKADGYPEPRIEWY 166
L C A G+PEP I+WY
Sbjct: 401 LQCVAAGFPEPTIDWY 416
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 151 LNCKADGYPEPRIEWY 166
L C A G+PEP I+WY
Sbjct: 426 LQCVAAGFPEPTIDWY 441
>pdb|3L5X|L Chain L, Crystal Structure Of The Complex Between Il-13 And H2l6
Fab
pdb|3L7F|L Chain L, Structure Of Il-13 Antibody H2l6, A Humanized Variant Of
C836
pdb|3L7F|A Chain A, Structure Of Il-13 Antibody H2l6, A Humanized Variant Of
C836
pdb|3L7F|D Chain D, Structure Of Il-13 Antibody H2l6, A Humanized Variant Of
C836
Length = 214
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD------------GSLVSAEIGSHRI 181
+T+ PA+ + E TL+C+A + WY+ GS + + I +
Sbjct: 4 LTQSPATLSLSPGERATLSCRASKSISKYLAWYQQKPGQAPRLLIYSGSTLQSGIPARFS 63
Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+G+ F L++ + + D VY+C NE + + L++
Sbjct: 64 GSGSGTDFTLTISSLEPE-DFAVYYCQQHNEYPYTFGQGTKLEI 106
>pdb|4HWN|A Chain A, Crystal Structure Of The Second Ig-C2 Domain Of Human
Fc-Receptor Like A (Fcrla), Isoform 9 [nysgrc-005836]
Length = 108
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 148 PTTLNCKADGYPEPR------IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD 201
P TL+C+ P R +YKDG +V + S +P S +
Sbjct: 24 PMTLSCQTK-LPLQRSAARLLFSFYKDGRIVQSRGLSSEFQIPTAS-----------EDH 71
Query: 202 SGVYWCVARNELGFARSKNATLDVAGKISTATDCSFK 238
SG YWC A E ++ L++ + ++A + F+
Sbjct: 72 SGSYWCEAATEDNQVWKQSPQLEIRVQGASAENLYFQ 108
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 148 PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC 207
P ++C P I W +D ++ A+ ++ G L + D D G Y C
Sbjct: 117 PINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIA-PTSDNDFGRYNC 175
Query: 208 VARNELG 214
A N +G
Sbjct: 176 TATNHIG 182
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 149 TTLNCKADGYPEPRIEWYK--DGSLVSAEIGSHRILLPAGSLFFLSLVHGK--KDTDSGV 204
TL C A+G P P I W + DG + S + S +H K K +DSG
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 205 YWCVARNELGFARSKNATLDV 225
Y C A + +G K+ LD+
Sbjct: 78 YDCEAASRIG-GHQKSMYLDI 97
>pdb|3RHZ|A Chain A, Structure And Functional Analysis Of A New Subfamily Of
Glycosyltransferases Required For Glycosylation Of
Serine-Rich Streptococcal Adhesions
pdb|3RHZ|B Chain B, Structure And Functional Analysis Of A New Subfamily Of
Glycosyltransferases Required For Glycosylation Of
Serine-Rich Streptococcal Adhesions
Length = 339
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 90 PDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR 130
P P RFS K W+ +PLK Y ++ L VH YR
Sbjct: 184 PGNPERFSFV--KEWKYDIPLKVYTWQNVELPQNVHKINYR 222
>pdb|3S7V|A Chain A, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|B Chain B, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|C Chain C, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|D Chain D, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|E Chain E, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|F Chain F, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|G Chain G, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|H Chain H, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|I Chain I, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|J Chain J, Unassembled Ki Polyomavirus Vp1 Pentamer
Length = 277
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 74 PQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQ 105
P + + Y + A PD PN+ S C+ K W+
Sbjct: 69 PDADTTVCYSLAEIAPPDIPNQVSECDMKVWE 100
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG 169
V + E AV P TL C+ P P+I W KDG
Sbjct: 3 EVQLVVEPEGGAVAPGGT-VTLTCEVPAQPSPQIHWMKDG 41
>pdb|3QKW|A Chain A, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|B Chain B, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|C Chain C, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|D Chain D, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
Length = 332
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 90 PDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYR 130
P P RFS K W+ +PLK Y ++ L VH YR
Sbjct: 176 PGNPERFSFV--KEWKYDIPLKVYTWQNVELPQNVHKINYR 214
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P+I P+ + + T+ C G P P + W G + ++ + L L
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ +K D G+Y NE G S +AT+++
Sbjct: 66 IIMDVQKQ-DGGLYTLSLGNEFG---SDSATVNI 95
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 148 PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWC 207
P ++C P I W +D ++ A+ ++ G L + D D G Y C
Sbjct: 117 PINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIA-PTSDNDFGRYNC 175
Query: 208 VARNELG 214
A N +G
Sbjct: 176 TATNHIG 182
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 150 TLNCKADGYPEPRIEWYK--DGSLVSAEIGSHRILLPAGSLFFLSLVHGK--KDTDSGVY 205
TL C A+G P P I W + DG + S + S +H K K +DSG Y
Sbjct: 19 TLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 78
Query: 206 WCVARNELGFARSKNATLDV 225
C A + +G K+ LD+
Sbjct: 79 DCEAASRIG-GHQKSMYLDI 97
>pdb|3SJV|D Chain D, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|I Chain I, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|N Chain N, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|S Chain S, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SKN|A Chain A, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|C Chain C, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|E Chain E, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|G Chain G, Crystal Structure Of The Rl42 Tcr Unliganded
Length = 203
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS------LVSA-----EIGSHRI 181
+ + P VP NC WY+ S L+S E G
Sbjct: 5 EVEQDPGPFNVPEGATVAFNCTYSNSASQSFFWYRQDSRKEPKLLMSVYSSGNEDGRFTA 64
Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210
L S + L+ K +DS Y CV R
Sbjct: 65 QLNRASQYISLLIRDSKLSDSATYLCVVR 93
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P+I P+ + + T+ C G P P + W G + ++ + L L
Sbjct: 8 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 67
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ +K D G+Y NE G S +AT+++
Sbjct: 68 IIMDVQKQ-DGGLYTLSLGNEFG---SDSATVNI 97
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG 169
P+I E S V + + G P+P EWYK+G
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNG 43
>pdb|2Q86|A Chain A, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
pdb|2Q86|C Chain C, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
Length = 229
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
++ + P S VV + E L C P+ + WYK + G +LL
Sbjct: 3 QVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWYK------QDTGKGLVLLTV------- 49
Query: 193 LVHGKKDTDSGVY 205
LV K T +G Y
Sbjct: 50 LVDQKDKTSNGRY 62
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKD--TDSGVYWC 207
L C G P PRI W +G I R AG ++ +H + D G Y C
Sbjct: 30 VLQCSVRGTPVPRITWLLNGQ----PIQYARSTCEAG----VAELHIQDALPEDHGTYTC 81
Query: 208 VARNELG 214
+A N LG
Sbjct: 82 LAENALG 88
>pdb|1F11|A Chain A, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
pdb|1F11|C Chain C, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
Length = 218
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 17/108 (15%)
Query: 134 ITEHPASAVVPRHEPTTLNCKA----DGYPEPRIEWYKDG-----SLVSAEIGSHRILLP 184
+T+ PAS V + T++CKA D + + WY+ L+ + + +P
Sbjct: 4 LTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYVASNLKSGIP 63
Query: 185 A-------GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
A G+ F L+ +H ++ D+ Y+C NE F L++
Sbjct: 64 ARFSGSGSGTDFTLN-IHPVEEEDAATYYCQQSNEDPFTFGSGTKLEI 110
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 149 TTLNCKADGYPEPRIEWYK--DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
TL C A G P P I W K + +AEI + +L +F + L D G+Y
Sbjct: 131 VTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVL---KIFNIQL------EDEGIYE 181
Query: 207 CVARNELG 214
C A N G
Sbjct: 182 CEAENIRG 189
>pdb|1A7Q|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) High Affinity Expressed Variant Containing
Ser26l->gly, Ile29l->thr, Glu81l->asp, Thr97l->ser,
Pro240h->leu, Asp258h->ala, Lys281h->glu, Asn283h->asp
And Leu312h->val
Length = 106
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD 168
+T+ PAS E T+ C+A G + WY+
Sbjct: 4 LTQSPASLSASVGETVTITCRAGGNTHNYLAWYQQ 38
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 163 IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
+ WYKDG ++++ R+ L + V G + D+G Y C A
Sbjct: 27 VRWYKDGERLASQ---GRVQLEQAGARQVLRVQGARSGDAGEYLCDA 70
>pdb|3OJD|A Chain A, Anti-Indolicidin Monoclonal Antibody V2d2 (Fab Fragment)
Length = 214
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+T+ PAS E T+ CKA G + WY+
Sbjct: 4 MTQTPASLSASVGESVTITCKASGNIHNYLAWYQ 37
>pdb|1QNZ|L Chain L, Nmr Structure Of The 0.5b Anti-Hiv Antibody Complex With
The Gp120 V3 Peptide
Length = 112
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 134 ITEHPASAVVPRHEPTTLNCKA----DGYPEPRIEWYKDG----------SLVSAEIGSH 179
+T+ PAS V + T++CKA D + + WY+ + + E G
Sbjct: 4 LTQSPASLAVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIP 63
Query: 180 RILLPAGSLFFLSL-VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+GS +L +H ++ D+ Y+C NE F L++
Sbjct: 64 ARFSGSGSRTDFTLNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEI 110
>pdb|2VL5|B Chain B, Structure Of Anti-Collagen Type Ii Fab Ciic1
pdb|2VL5|D Chain D, Structure Of Anti-Collagen Type Ii Fab Ciic1
pdb|2Y5T|B Chain B, Crystal Structure Of The Pathogenic Autoantibody Ciic1 In
Complex With The Triple-Helical C1 Peptide
Length = 218
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 134 ITEHPASAVVPRHEPTTLNCKA----DGYPEPRIEWYK 167
+T+ PAS V + T++C+A D Y +EWY+
Sbjct: 4 LTQSPASLTVSLGQRATISCRASKSVDSYGNSFMEWYQ 41
>pdb|1JHL|L Chain L, Three-Dimensional Structure Of A Heteroclitic Antigen-
Antibody Cross-Reaction Complex
Length = 108
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD------------GSLVSAEIGSHR 180
+T+ P+ V E T+NC+A + WY++ GS + + I S
Sbjct: 3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRF 62
Query: 181 ILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+G+ F L+ + + D +Y C NE + L++
Sbjct: 63 SGSGSGTDFTLT-ISSLEPEDFAMYICQQHNEYPWTFGGGTKLEI 106
>pdb|1B4J|L Chain L, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An Anti-Gamma-Interferon
Antibody
Length = 214
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+T+ P S V E TL+CKA + + WY+
Sbjct: 4 MTQSPKSMYVSIGERVTLSCKASENVDTYVSWYQ 37
>pdb|4EI5|C Chain C, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI5|G Chain G, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI6|A Chain A, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
pdb|4EI6|C Chain C, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
pdb|4ELK|A Chain A, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELK|C Chain C, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELM|E Chain E, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
pdb|4ELM|G Chain G, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
Length = 208
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK---------------DGSLVSAEIG 177
++ + P S VP +LNC + WY+ DG
Sbjct: 4 KVQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFT 63
Query: 178 SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR 217
+H L SL + + +DS +Y+C A + +A+
Sbjct: 64 AH---LNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQ 100
>pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment Of The Monoclonal
Antibody Mak33
Length = 213
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI----GSHRIL-LP---- 184
+T+ PA+ V E +L+C+A + WY+ S S + S I +P
Sbjct: 4 LTQSPATLSVTPGESVSLSCRASQSISNNLHWYQQKSHESPRLLIKYASQSISGIPSRFS 63
Query: 185 ---AGSLFFLSLVHGKKDTDSGVYWCVARN 211
+G+ F LS ++ + D G+Y+C N
Sbjct: 64 GSGSGTDFTLS-INSVETEDFGMYYCQQSN 92
>pdb|4HFU|L Chain L, Crystal Structure Of Fab 8m2 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 215
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG-----SLVSAEIGSHRILLPA-- 185
++T+ PAS V E TL+C+A + WY+ L+ + +PA
Sbjct: 3 QLTQSPASLSVSPGERATLSCRASQSVAGNLAWYQQKPGQAPRLLIYGASTRATGIPARF 62
Query: 186 -----GSLFFLSLVHGKKDTDSGVYWCVARN 211
G+ F L++ + + D VY+C N
Sbjct: 63 SGSGSGTEFTLTITSLQSE-DFAVYYCQQYN 92
>pdb|1ACY|L Chain L, Crystal Structure Of The Principal Neutralizing Site Of
Hiv- 1
pdb|1AI1|L Chain L, Hiv-1 V3 Loop Mimic
Length = 215
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 134 ITEHPASAVVPRHEPTTLNCKA----DGYPEPRIEWYK 167
+T+ PAS VV + T++C+A D Y + + WY+
Sbjct: 4 MTQSPASLVVSLGQRATISCRASESVDSYGKSFMHWYQ 41
>pdb|2NYY|C Chain C, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|C Chain C, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|E Chain E, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 218
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 17/108 (15%)
Query: 134 ITEHPASAVVPRHEPTTLNCKA----DGYPEPRIEWYKDGSLVSAEIGSHRIL-----LP 184
+T+ PA+ + E T++C+A D Y ++WY+ + + +R +P
Sbjct: 4 LTQSPATLSLSPGERATISCRASESVDSYGHSFMQWYQQKPGQAPRLLIYRASNLEPGIP 63
Query: 185 A-------GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
A G+ F L++ + + D VY+C NE+ F + +++
Sbjct: 64 ARFSGSGSGTDFTLTISSLEPE-DFAVYYCQQGNEVPFTFGQGTKVEI 110
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 157 GYPEPRIEWYKDG 169
GYP P I+WYK+G
Sbjct: 226 GYPPPEIKWYKNG 238
>pdb|4G6A|D Chain D, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Ap33
pdb|4G6A|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Ap33
Length = 218
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 134 ITEHPASAVVPRHEPTTLNCKA----DGYPEPRIEWYK 167
+T+ PAS V + T++C+A DGY + W++
Sbjct: 4 LTQSPASLAVSLGQRATISCRASESVDGYGNSFLHWFQ 41
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 162 RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV 208
+I+WYKD L+ + + + L G+ LVH D+G Y CV
Sbjct: 156 KIQWYKDSLLLDKD--NEKFLSVRGTTHL--LVHDVALEDAGYYRCV 198
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
+I P S + L C A G P P +W+K+ ++ E ++P ++
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK-LYMVP-----YVD 58
Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L H G YWC N+ SK + +
Sbjct: 59 LEH------QGTYWCHVYNDRDSQDSKKVEIII 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,874,268
Number of Sequences: 62578
Number of extensions: 361128
Number of successful extensions: 1432
Number of sequences better than 100.0: 154
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1179
Number of HSP's gapped (non-prelim): 236
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)