Query psy18191
Match_columns 238
No_of_seqs 203 out of 2299
Neff 9.7
Searched_HMMs 46136
Date Sat Aug 17 01:10:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.8 6.9E-19 1.5E-23 121.5 13.4 97 132-232 1-97 (98)
2 KOG3513|consensus 99.8 2.1E-18 4.5E-23 156.9 18.8 150 61-228 268-423 (1051)
3 cd05851 Ig3_Contactin-1 Third 99.8 2.3E-18 4.9E-23 116.6 11.1 88 131-226 1-88 (88)
4 KOG3513|consensus 99.8 1E-17 2.2E-22 152.4 14.4 193 14-232 303-520 (1051)
5 cd07693 Ig1_Robo First immunog 99.8 3.8E-17 8.3E-22 113.0 12.8 95 131-225 1-99 (100)
6 cd05745 Ig3_Peroxidasin Third 99.7 6.1E-17 1.3E-21 106.0 9.5 74 145-225 1-74 (74)
7 cd05848 Ig1_Contactin-5 First 99.7 1.5E-16 3.2E-21 109.0 11.7 87 132-223 2-92 (94)
8 cd04968 Ig3_Contactin_like Thi 99.7 1.8E-16 3.9E-21 107.3 11.9 88 131-226 1-88 (88)
9 cd05735 Ig8_DSCAM Eight immuno 99.7 2.5E-16 5.4E-21 106.5 12.5 86 146-232 1-88 (88)
10 cd05850 Ig1_Contactin-2 First 99.7 2.6E-16 5.6E-21 107.8 12.5 89 132-224 2-93 (94)
11 cd05869 Ig5_NCAM-1 Fifth immun 99.7 3.2E-16 7E-21 108.0 12.9 95 130-225 1-97 (97)
12 cd05867 Ig4_L1-CAM_like Fourth 99.7 1.4E-16 3E-21 104.8 10.1 75 146-225 1-75 (76)
13 cd05728 Ig4_Contactin-2-like F 99.7 1.7E-16 3.7E-21 106.7 10.6 83 135-225 3-85 (85)
14 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 4.2E-16 9E-21 104.9 12.2 83 140-225 4-86 (86)
15 cd05747 Ig5_Titin_like M5, fif 99.7 3.3E-16 7.2E-21 106.9 11.7 90 130-223 2-91 (92)
16 cd05852 Ig5_Contactin-1 Fifth 99.7 1.2E-16 2.6E-21 104.1 8.7 73 146-225 1-73 (73)
17 cd05722 Ig1_Neogenin First imm 99.7 5E-16 1.1E-20 106.7 12.2 92 134-225 2-95 (95)
18 cd05868 Ig4_NrCAM Fourth immun 99.7 2.2E-16 4.8E-21 103.8 9.9 75 146-225 1-75 (76)
19 cd05849 Ig1_Contactin-1 First 99.7 3.7E-16 8E-21 106.7 11.1 88 131-224 1-92 (93)
20 cd05730 Ig3_NCAM-1_like Third 99.7 3.6E-16 7.7E-21 107.4 11.0 91 131-227 1-94 (95)
21 cd05892 Ig_Myotilin_C C-termin 99.7 3.1E-16 6.7E-21 102.6 10.0 74 149-225 1-75 (75)
22 KOG4221|consensus 99.7 1.2E-16 2.5E-21 145.7 10.6 193 16-228 204-418 (1381)
23 cd05740 Ig_CEACAM_D4 Fourth im 99.7 4.7E-16 1E-20 105.8 11.0 88 132-226 2-91 (91)
24 cd05737 Ig_Myomesin_like_C C-t 99.7 8.4E-16 1.8E-20 104.9 12.3 85 138-225 8-92 (92)
25 cd05723 Ig4_Neogenin Fourth im 99.7 5.2E-16 1.1E-20 100.7 10.5 71 148-225 1-71 (71)
26 cd05893 Ig_Palladin_C C-termin 99.7 5.3E-16 1.1E-20 101.6 9.9 74 149-225 1-75 (75)
27 cd04972 Ig_TrkABC_d4 Fourth do 99.7 1.4E-15 2.9E-20 103.4 11.8 86 136-225 5-90 (90)
28 cd04975 Ig4_SCFR_like Fourth i 99.7 7.4E-16 1.6E-20 106.6 10.6 86 139-226 11-100 (101)
29 PF07679 I-set: Immunoglobulin 99.7 1.7E-15 3.7E-20 102.8 12.3 90 132-225 1-90 (90)
30 cd05732 Ig5_NCAM-1_like Fifth 99.7 1.8E-15 3.8E-20 104.1 12.0 93 131-225 2-96 (96)
31 KOG4194|consensus 99.7 8E-16 1.7E-20 132.1 11.9 193 13-226 582-796 (873)
32 cd05773 Ig8_hNephrin_like Eigh 99.7 3.1E-15 6.8E-20 105.2 12.7 101 129-230 2-109 (109)
33 cd05724 Ig2_Robo Second immuno 99.7 1.9E-15 4.2E-20 101.7 11.1 84 137-225 2-86 (86)
34 cd05870 Ig5_NCAM-2 Fifth immun 99.7 2.6E-15 5.6E-20 103.7 11.9 90 130-225 1-98 (98)
35 cd04978 Ig4_L1-NrCAM_like Four 99.7 1.4E-15 3E-20 100.0 9.6 75 146-225 1-75 (76)
36 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 1.3E-15 2.8E-20 99.7 9.0 74 149-226 1-74 (74)
37 cd05865 Ig1_NCAM-1 First immun 99.6 4E-15 8.7E-20 102.1 11.9 89 135-225 4-95 (96)
38 cd05744 Ig_Myotilin_C_like Imm 99.6 2.4E-15 5.3E-20 98.5 10.4 75 149-225 1-75 (75)
39 cd04969 Ig5_Contactin_like Fif 99.6 1.8E-15 3.9E-20 98.7 9.4 73 146-225 1-73 (73)
40 KOG4221|consensus 99.6 7.3E-15 1.6E-19 134.1 15.9 159 61-233 167-333 (1381)
41 KOG4194|consensus 99.6 1.2E-15 2.7E-20 130.9 10.3 131 83-231 576-709 (873)
42 cd05854 Ig6_Contactin-2 Sixth 99.6 3.1E-15 6.7E-20 100.5 10.0 78 147-229 1-85 (85)
43 cd05749 Ig2_Tyro3_like Second 99.6 2.3E-15 5E-20 99.9 9.3 78 135-223 2-80 (81)
44 cd05857 Ig2_FGFR Second immuno 99.6 4.9E-15 1.1E-19 99.5 10.8 80 141-225 4-85 (85)
45 cd05859 Ig4_PDGFR-alpha Fourth 99.6 5.6E-15 1.2E-19 102.3 11.3 80 140-226 12-100 (101)
46 cd05891 Ig_M-protein_C C-termi 99.6 1.4E-14 3.1E-19 98.7 12.2 86 137-225 7-92 (92)
47 cd05876 Ig3_L1-CAM Third immun 99.6 4.1E-15 8.9E-20 96.4 8.7 71 149-226 1-71 (71)
48 cd05863 Ig2_VEGFR-3 Second imm 99.6 3.9E-15 8.5E-20 94.9 8.2 65 149-225 1-65 (67)
49 cd05760 Ig2_PTK7 Second immuno 99.6 6.5E-15 1.4E-19 97.0 9.4 74 149-226 1-75 (77)
50 cd05748 Ig_Titin_like Immunogl 99.6 1.4E-14 3.1E-19 94.6 11.0 74 148-225 1-74 (74)
51 cd05853 Ig6_Contactin-4 Sixth 99.6 7.2E-15 1.6E-19 98.1 9.6 78 147-229 1-85 (85)
52 cd05866 Ig1_NCAM-2 First immun 99.6 2.1E-14 4.5E-19 97.6 11.9 83 136-225 5-91 (92)
53 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 1.4E-14 3.1E-19 93.2 9.7 68 146-223 1-68 (69)
54 cd04976 Ig2_VEGFR Second immun 99.6 9.8E-15 2.1E-19 94.6 8.9 69 149-225 1-69 (71)
55 cd04970 Ig6_Contactin_like Six 99.6 1.1E-14 2.4E-19 97.8 9.4 78 147-229 1-85 (85)
56 cd05746 Ig4_Peroxidasin Fourth 99.6 6.1E-15 1.3E-19 95.1 7.8 68 149-223 1-68 (69)
57 cd04967 Ig1_Contactin First Ig 99.6 2.3E-14 5E-19 97.6 10.8 83 132-219 2-88 (91)
58 cd05764 Ig_2 Subgroup of the i 99.6 2.1E-14 4.5E-19 93.9 9.9 73 146-225 1-74 (74)
59 cd04977 Ig1_NCAM-1_like First 99.6 5.2E-14 1.1E-18 96.0 12.1 88 135-225 4-92 (92)
60 cd05725 Ig3_Robo Third immunog 99.6 9.1E-15 2E-19 94.2 7.8 69 149-225 1-69 (69)
61 cd05726 Ig4_Robo Fhird immunog 99.6 2.4E-14 5.2E-19 97.3 10.2 81 146-231 1-87 (90)
62 cd05758 Ig5_KIRREL3-like Fifth 99.6 9.9E-14 2.1E-18 95.8 12.8 91 131-223 2-97 (98)
63 cd04973 Ig1_FGFR First immunog 99.6 2E-14 4.3E-19 95.2 8.8 79 138-225 1-79 (79)
64 cd05864 Ig2_VEGFR-2 Second imm 99.6 1.7E-14 3.7E-19 92.9 8.0 68 149-225 1-68 (70)
65 cd05763 Ig_1 Subgroup of the i 99.6 2.5E-14 5.3E-19 93.8 8.8 72 149-225 1-74 (75)
66 cd04974 Ig3_FGFR Third immunog 99.6 2.8E-14 6.1E-19 96.9 9.1 79 146-226 1-90 (90)
67 PHA02785 IL-beta-binding prote 99.6 1.4E-13 3.1E-18 115.0 15.1 149 61-217 153-319 (326)
68 cd05733 Ig6_L1-CAM_like Sixth 99.6 2.9E-14 6.3E-19 93.9 8.5 74 149-223 1-76 (77)
69 cd05743 Ig_Perlecan_D2_like Im 99.6 7E-14 1.5E-18 92.3 10.2 75 146-224 1-75 (78)
70 cd05874 Ig6_NrCAM Sixth immuno 99.5 5.9E-14 1.3E-18 92.4 9.7 75 149-223 1-76 (77)
71 cd05858 Ig3_FGFR-2 Third immun 99.5 6.3E-14 1.4E-18 95.2 9.6 79 146-225 1-89 (90)
72 cd05731 Ig3_L1-CAM_like Third 99.5 3.9E-14 8.4E-19 91.7 8.2 71 149-226 1-71 (71)
73 KOG4222|consensus 99.5 2.3E-14 4.9E-19 130.3 9.4 193 16-231 103-318 (1281)
74 cd05856 Ig2_FGFRL1-like Second 99.5 3.8E-14 8.3E-19 94.3 8.1 79 141-225 4-82 (82)
75 KOG4222|consensus 99.5 5.2E-14 1.1E-18 128.0 11.4 158 61-233 58-230 (1281)
76 cd05855 Ig_TrkB_d5 Fifth domai 99.5 1.3E-13 2.8E-18 90.7 10.3 73 151-224 3-77 (79)
77 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 1.4E-13 3E-18 91.4 10.4 73 150-224 2-79 (81)
78 cd05736 Ig2_Follistatin_like S 99.5 9.6E-14 2.1E-18 91.2 9.5 73 149-226 1-74 (76)
79 cd05875 Ig6_hNeurofascin_like 99.5 1.6E-13 3.5E-18 90.3 10.2 74 149-223 1-76 (77)
80 cd05734 Ig7_DSCAM Seventh immu 99.5 6.6E-14 1.4E-18 92.7 8.2 73 149-225 1-79 (79)
81 cd07702 Ig2_VEGFR-1 Second imm 99.5 7.1E-14 1.5E-18 90.4 7.9 70 149-224 1-71 (72)
82 cd05756 Ig1_IL1R_like First im 99.5 1.2E-13 2.6E-18 94.4 8.1 82 139-225 7-94 (94)
83 PHA02826 IL-1 receptor-like pr 99.5 1.2E-12 2.6E-17 103.5 14.3 107 82-213 99-211 (227)
84 cd05765 Ig_3 Subgroup of the i 99.5 3.2E-13 7E-18 89.7 8.9 75 146-225 1-81 (81)
85 cd05750 Ig_Pro_neuregulin Immu 99.5 3.9E-13 8.4E-18 87.9 9.1 73 149-222 1-74 (75)
86 cd05752 Ig1_FcgammaR_like Frst 99.4 4.7E-13 1E-17 88.2 7.9 77 132-225 1-78 (78)
87 PHA02785 IL-beta-binding prote 99.4 2.1E-12 4.6E-17 108.0 13.0 148 61-228 58-218 (326)
88 cd05873 Ig_Sema4D_like Immunog 99.4 2E-12 4.3E-17 86.6 10.0 70 137-213 2-71 (87)
89 cd05898 Ig5_KIRREL3 Fifth immu 99.4 5.1E-12 1.1E-16 86.5 11.8 91 131-223 2-97 (98)
90 cd04979 Ig_Semaphorin_C Immuno 99.4 2.9E-12 6.2E-17 86.8 9.7 85 138-227 3-88 (89)
91 cd05754 Ig3_Perlecan_like Thir 99.4 3E-12 6.5E-17 85.9 8.3 78 136-223 6-84 (85)
92 cd05729 Ig2_FGFR_like Second i 99.4 1.1E-11 2.3E-16 82.9 10.8 80 141-225 4-85 (85)
93 cd05742 Ig1_VEGFR_like First i 99.4 6.8E-12 1.5E-16 84.0 9.0 79 146-225 1-83 (84)
94 cd05727 Ig2_Contactin-2-like S 99.3 5.3E-12 1.1E-16 85.9 7.5 74 139-216 11-86 (96)
95 cd05895 Ig_Pro_neuregulin-1 Im 99.3 1.8E-11 4E-16 80.2 8.9 72 149-222 1-75 (76)
96 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 5.9E-11 1.3E-15 79.4 11.3 80 146-226 1-83 (84)
97 cd05753 Ig2_FcgammaR_like Seco 99.3 1.1E-11 2.4E-16 82.7 7.7 75 140-225 8-83 (83)
98 cd05882 Ig1_Necl-1 First (N-te 99.3 7.4E-11 1.6E-15 80.6 11.2 85 139-225 5-95 (95)
99 cd05757 Ig2_IL1R_like Second i 99.3 3.7E-11 8.1E-16 81.6 8.9 78 140-225 4-86 (92)
100 PF13895 Ig_2: Immunoglobulin 99.3 6.5E-11 1.4E-15 77.9 9.5 80 131-225 1-80 (80)
101 cd05845 Ig2_L1-CAM_like Second 99.2 3E-11 6.5E-16 82.0 7.2 74 138-216 10-85 (95)
102 cd07701 Ig1_Necl-3 First (N-te 99.2 2.3E-10 5.1E-15 78.3 10.4 84 138-225 4-95 (95)
103 smart00408 IGc2 Immunoglobulin 99.2 2E-10 4.2E-15 71.6 8.4 63 145-214 1-63 (63)
104 cd05871 Ig_Semaphorin_classIII 99.1 7.3E-10 1.6E-14 75.2 9.8 81 141-227 6-90 (91)
105 cd05862 Ig1_VEGFR First immuno 99.1 8.7E-10 1.9E-14 74.0 9.2 81 146-227 1-86 (86)
106 cd05860 Ig4_SCFR Fourth immuno 99.0 3.9E-09 8.5E-14 72.0 10.4 86 139-226 11-100 (101)
107 cd05897 Ig2_IL1R2_like Second 99.0 1.7E-09 3.6E-14 73.6 8.6 80 141-226 5-94 (95)
108 cd05771 IgC_Tapasin_R Tapasin- 99.0 5.2E-09 1.1E-13 76.8 11.3 120 82-214 2-132 (139)
109 cd05717 Ig1_Necl-1-3_like Firs 99.0 5.6E-09 1.2E-13 71.4 10.5 85 139-225 5-95 (95)
110 smart00410 IG_like Immunoglobu 99.0 1.9E-08 4.1E-13 66.3 12.3 83 139-225 2-85 (86)
111 smart00409 IG Immunoglobulin. 99.0 1.9E-08 4.1E-13 66.3 12.3 83 139-225 2-85 (86)
112 cd07690 Ig1_CD4 First immunogl 99.0 3.3E-09 7.1E-14 72.2 8.0 75 141-217 2-92 (94)
113 cd05885 Ig2_Necl-4 Second immu 99.0 5.7E-09 1.2E-13 68.5 8.0 65 148-216 1-69 (80)
114 PF13927 Ig_3: Immunoglobulin 98.9 2.8E-09 6E-14 69.0 4.8 74 131-211 1-75 (75)
115 PF00047 ig: Immunoglobulin do 98.9 8.8E-09 1.9E-13 64.9 6.8 62 146-209 1-64 (64)
116 cd05872 Ig_Sema4B_like Immunog 98.9 2.7E-08 5.8E-13 66.2 9.1 65 139-211 4-68 (85)
117 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 2.4E-08 5.3E-13 68.4 8.6 81 140-225 9-104 (104)
118 PHA02826 IL-1 receptor-like pr 98.8 2E-08 4.4E-13 79.5 8.8 85 139-228 30-135 (227)
119 cd05759 Ig2_KIRREL3-like Secon 98.8 4.9E-08 1.1E-12 64.8 9.4 76 148-224 1-81 (82)
120 cd05751 Ig1_LILRB1_like First 98.8 3.8E-08 8.3E-13 66.7 8.7 87 131-225 2-90 (91)
121 cd05774 Ig_CEACAM_D1 First imm 98.7 2.7E-07 5.8E-12 64.1 10.1 84 138-225 5-105 (105)
122 cd05881 Ig1_Necl-2 First (N-te 98.6 1.1E-06 2.3E-11 59.9 11.4 73 139-212 5-84 (95)
123 cd05714 Ig_CSPGs_LP Immunoglob 98.6 1.2E-06 2.6E-11 61.1 10.9 80 145-227 1-104 (106)
124 cd05877 Ig_LP_like Immunoglobu 98.6 1.5E-06 3.3E-11 60.5 10.6 82 145-227 1-104 (106)
125 cd04983 IgV_TCR_alpha_like Imm 98.5 8.3E-07 1.8E-11 62.1 8.9 75 137-213 4-93 (109)
126 cd05741 Ig_CEACAM_D1_like Firs 98.5 6.4E-07 1.4E-11 60.6 8.0 76 146-225 1-92 (92)
127 cd05883 Ig2_Necl-2 Second immu 98.5 2E-06 4.3E-11 56.7 9.5 77 148-226 1-80 (82)
128 cd05899 IgV_TCR_beta Immunoglo 98.5 1.3E-06 2.9E-11 61.2 9.0 77 136-213 3-95 (110)
129 cd05775 Ig_SLAM-CD84_like_N N- 98.5 1.5E-06 3.3E-11 59.6 8.9 78 144-225 2-96 (97)
130 cd00098 IgC Immunoglobulin Con 98.5 7.3E-07 1.6E-11 60.7 6.8 72 144-215 11-87 (95)
131 cd05879 Ig_P0 Immunoglobulin ( 98.4 5.2E-06 1.1E-10 58.8 10.6 85 139-225 6-116 (116)
132 cd05900 Ig_Aggrecan Immunoglob 98.4 5.9E-06 1.3E-10 58.1 10.7 78 145-227 1-110 (112)
133 cd04980 IgV_L_kappa Immunoglob 98.4 3.3E-06 7.2E-11 58.8 8.9 78 135-212 4-93 (106)
134 cd05761 Ig2_Necl-1-4_like Seco 98.4 4.7E-06 1E-10 55.2 9.0 66 149-216 2-71 (82)
135 cd05755 Ig2_ICAM-1_like Second 98.4 4.7E-06 1E-10 57.2 8.8 79 136-216 6-88 (100)
136 cd05711 Ig_FcalphaRI Immunoglo 98.3 5.9E-06 1.3E-10 56.3 8.9 75 131-210 1-75 (94)
137 cd07705 Ig2_Necl-1 Second immu 98.3 7.2E-06 1.6E-10 54.5 9.1 67 149-216 2-72 (83)
138 cd05718 Ig1_PVR_like First imm 98.3 1.1E-05 2.3E-10 55.2 9.7 78 147-225 1-97 (98)
139 cd00099 IgV Immunoglobulin var 98.3 5.1E-06 1.1E-10 57.5 7.7 73 142-214 2-91 (105)
140 cd05878 Ig_Aggrecan_like Immun 98.3 1.2E-05 2.6E-10 56.4 9.6 80 145-227 1-108 (110)
141 cd05713 Ig_MOG_like Immunoglob 98.3 1.6E-05 3.5E-10 54.6 9.8 31 194-225 69-99 (100)
142 cd07698 IgC_MHC_I_alpha3 Class 98.2 2E-05 4.4E-10 53.5 9.6 68 146-214 14-84 (93)
143 cd05715 Ig_P0-like Immunoglobu 98.2 1.9E-05 4.1E-10 56.0 9.7 87 138-224 5-115 (116)
144 PF07686 V-set: Immunoglobulin 98.2 2.3E-05 5E-10 54.7 9.4 89 137-225 7-114 (114)
145 cd04982 IgV_TCR_gamma Immunogl 98.2 1.2E-05 2.5E-10 57.0 7.6 74 138-211 5-98 (116)
146 cd05880 Ig_EVA1 Immunoglobulin 98.2 2.6E-05 5.7E-10 55.2 9.3 85 138-224 5-114 (115)
147 cd04984 IgV_L_lambda Immunoglo 98.1 2.6E-05 5.5E-10 53.5 8.0 70 142-212 2-85 (98)
148 cd05846 Ig1_MRC-OX-2_like Firs 98.1 5.7E-05 1.2E-09 51.7 9.2 80 146-226 1-97 (97)
149 cd05902 Ig_Neurocan Immunoglob 98.0 8.8E-05 1.9E-09 51.9 10.1 79 146-227 2-108 (110)
150 PF08205 C2-set_2: CD80-like C 98.0 2.8E-05 6.1E-10 52.2 7.3 71 146-216 14-87 (89)
151 PHA02987 Ig domain OX-2-like p 98.0 6.9E-05 1.5E-09 56.6 9.8 91 139-229 23-125 (189)
152 cd05884 Ig2_Necl-3 Second immu 98.0 4.2E-05 9.1E-10 50.8 7.7 66 149-215 2-71 (83)
153 cd05888 Ig1_Nectin-4_like Frst 98.0 0.00011 2.4E-09 50.6 10.0 31 194-225 68-99 (100)
154 cd05886 Ig1_Nectin-1_like Firs 98.0 0.00018 3.9E-09 49.4 10.5 31 194-225 67-98 (99)
155 cd07700 IgV_CD8_beta Immunoglo 98.0 7.1E-05 1.5E-09 52.2 8.2 70 142-211 2-93 (107)
156 cd05887 Ig1_Nectin-3_like Firs 97.9 0.00022 4.7E-09 48.6 9.4 74 147-225 1-95 (96)
157 cd07706 IgV_TCR_delta Immunogl 97.9 0.00024 5.2E-09 50.2 10.0 75 136-211 4-93 (116)
158 cd05719 Ig2_PVR_like Second im 97.9 0.00011 2.4E-09 50.0 7.6 66 147-215 16-84 (95)
159 cd05901 Ig_Versican Immunoglob 97.9 0.00037 8.1E-09 49.1 10.4 33 194-227 83-115 (117)
160 cd05716 Ig_pIgR Immunoglobulin 97.8 0.00019 4.1E-09 49.0 8.6 73 141-213 2-87 (98)
161 cd05772 IgC_SIRP Signal-regula 97.8 0.00019 4.1E-09 50.3 8.5 72 141-213 16-92 (111)
162 cd04971 Ig_TrKABC_d5 Fifth dom 97.8 5E-05 1.1E-09 50.2 4.7 45 60-104 9-69 (81)
163 cd05770 IgC_beta2m Class I maj 97.8 0.00031 6.7E-09 47.6 8.4 67 144-212 13-82 (93)
164 cd05855 Ig_TrkB_d5 Fifth domai 97.7 3.7E-05 8.1E-10 50.4 3.7 46 59-104 8-67 (79)
165 cd07699 IgC_L Immunoglobulin C 97.7 0.00011 2.4E-09 50.5 6.0 82 132-213 2-89 (100)
166 cd05863 Ig2_VEGFR-3 Second imm 97.7 2.8E-05 6.1E-10 49.3 2.5 44 60-103 9-53 (67)
167 cd00096 Ig Immunoglobulin doma 97.7 0.00011 2.4E-09 45.6 5.1 68 149-216 1-69 (74)
168 cd05766 IgC_MHC_II_beta Class 97.7 0.00054 1.2E-08 46.5 8.7 71 144-215 12-85 (94)
169 cd07694 Ig2_CD4 Second immunog 97.6 0.00083 1.8E-08 44.5 8.6 64 140-212 8-73 (88)
170 cd05864 Ig2_VEGFR-2 Second imm 97.6 5.4E-05 1.2E-09 48.5 2.9 45 60-104 9-57 (70)
171 cd07703 Ig2_Nectin-2_like Seco 97.6 0.00038 8.2E-09 47.4 7.2 66 147-215 16-84 (95)
172 cd05893 Ig_Palladin_C C-termin 97.6 0.0001 2.2E-09 47.9 4.1 45 60-104 9-64 (75)
173 cd05767 IgC_MHC_II_alpha Class 97.6 0.00064 1.4E-08 46.2 8.0 67 145-212 14-83 (94)
174 KOG3515|consensus 97.6 0.0012 2.7E-08 60.1 12.0 147 49-212 23-185 (741)
175 cd05892 Ig_Myotilin_C C-termin 97.6 0.00012 2.6E-09 47.5 4.2 50 60-111 9-69 (75)
176 smart00407 IGc1 Immunoglobulin 97.6 0.0013 2.9E-08 42.6 9.0 66 148-213 1-71 (75)
177 cd05720 Ig_CD8_alpha Immunoglo 97.5 0.00034 7.3E-09 48.5 6.4 70 142-211 2-90 (104)
178 cd07697 IgC_TCR_gamma T cell r 97.5 0.00053 1.1E-08 46.8 6.9 69 142-211 12-83 (96)
179 KOG3515|consensus 97.4 0.00015 3.3E-09 65.8 4.4 91 131-229 7-98 (741)
180 cd05847 IgC_CH2_IgE CH2 domain 97.4 0.0016 3.4E-08 44.3 8.1 72 145-216 13-89 (94)
181 cd05768 IgC_CH4 CH4 domain (fo 97.4 0.00073 1.6E-08 46.7 6.4 71 142-213 12-91 (102)
182 cd05760 Ig2_PTK7 Second immuno 97.4 0.00034 7.4E-09 45.6 4.3 44 61-104 10-61 (77)
183 cd05744 Ig_Myotilin_C_like Imm 97.3 0.00052 1.1E-08 44.5 5.0 44 60-103 9-63 (75)
184 cd04975 Ig4_SCFR_like Fourth i 97.3 0.00026 5.6E-09 48.8 3.7 46 59-104 29-88 (101)
185 cd04981 IgV_H Immunoglobulin ( 97.3 0.0018 3.9E-08 45.9 8.1 75 137-211 3-97 (117)
186 cd05748 Ig_Titin_like Immunogl 97.3 0.00045 9.7E-09 44.5 4.5 45 60-104 10-63 (74)
187 cd05889 Ig1_DNAM-1_like First 97.3 0.0037 8E-08 42.6 9.0 67 147-217 1-88 (96)
188 cd05712 Ig_Siglec_N Immunoglob 97.3 0.0025 5.4E-08 45.2 8.6 75 138-212 6-102 (119)
189 cd05746 Ig4_Peroxidasin Fourth 97.3 0.00028 6.1E-09 44.9 3.3 44 61-104 10-59 (69)
190 cd05769 IgC_TCR_beta T cell re 97.3 0.002 4.3E-08 45.5 7.7 85 131-216 2-95 (115)
191 cd04976 Ig2_VEGFR Second immun 97.3 0.00027 5.9E-09 45.3 3.0 44 60-103 9-57 (71)
192 cd07692 Ig_CD3_epsilon Immunog 97.2 0.00049 1.1E-08 42.8 3.8 51 144-211 5-55 (65)
193 cd07702 Ig2_VEGFR-1 Second imm 97.2 0.0002 4.4E-09 46.1 2.1 44 60-103 9-58 (72)
194 PF07654 C1-set: Immunoglobuli 97.2 0.0018 4E-08 42.7 6.8 70 145-215 7-79 (83)
195 cd05894 Ig_C5_MyBP-C C5 immuno 97.2 0.00094 2E-08 44.5 5.0 44 60-103 21-74 (86)
196 cd05859 Ig4_PDGFR-alpha Fourth 97.2 0.0003 6.6E-09 48.5 2.6 44 60-103 29-87 (101)
197 cd07696 IgC_CH3 CH3 domain (th 97.2 0.0014 3E-08 44.7 5.7 72 141-213 9-86 (96)
198 cd07704 Ig2_Nectin-3-4_like Se 97.1 0.0033 7.2E-08 42.8 7.2 71 141-214 11-85 (97)
199 cd05762 Ig8_MLCK Eighth immuno 97.1 0.00098 2.1E-08 45.6 4.5 45 61-105 27-80 (98)
200 cd04985 IgC_CH1 CH1 domain (fi 97.0 0.0037 8E-08 42.5 6.9 67 145-213 15-87 (95)
201 cd05750 Ig_Pro_neuregulin Immu 97.0 0.00088 1.9E-08 43.0 3.6 44 61-104 11-66 (75)
202 cd07691 Ig_CD3_gamma_delta Imm 97.0 0.0012 2.6E-08 41.4 3.9 49 146-211 6-54 (69)
203 cd05852 Ig5_Contactin-1 Fifth 97.0 0.00082 1.8E-08 43.3 3.1 45 61-105 13-63 (73)
204 cd05745 Ig3_Peroxidasin Third 96.9 0.00065 1.4E-08 43.8 2.5 45 60-104 13-63 (74)
205 smart00406 IGv Immunoglobulin 96.9 0.0051 1.1E-07 39.8 6.8 61 148-208 1-80 (81)
206 cd05737 Ig_Myomesin_like_C C-t 96.9 0.0016 3.4E-08 43.9 4.4 44 61-104 28-81 (92)
207 cd05867 Ig4_L1-CAM_like Fourth 96.9 0.0013 2.9E-08 42.6 3.8 43 61-103 13-63 (76)
208 cd05876 Ig3_L1-CAM Third immun 96.9 0.0012 2.5E-08 42.3 3.2 45 60-104 9-59 (71)
209 cd05757 Ig2_IL1R_like Second i 96.9 0.0013 2.8E-08 44.5 3.5 43 62-104 28-75 (92)
210 cd05853 Ig6_Contactin-4 Sixth 96.9 0.0022 4.9E-08 42.6 4.5 44 62-105 15-71 (85)
211 cd05897 Ig2_IL1R2_like Second 96.9 0.00056 1.2E-08 46.5 1.6 43 61-103 27-77 (95)
212 KOG1480|consensus 96.8 0.00036 7.9E-09 62.8 0.8 86 134-225 132-218 (909)
213 PHA03376 BARF1; Provisional 96.8 0.014 3E-07 44.3 9.0 72 140-213 20-110 (221)
214 cd05857 Ig2_FGFR Second immuno 96.8 0.0021 4.5E-08 42.5 4.3 44 61-104 21-74 (85)
215 cd05723 Ig4_Neogenin Fourth im 96.8 0.0021 4.6E-08 41.0 4.0 44 61-104 11-60 (71)
216 cd05738 Ig2_RPTP_IIa_LAR_like 96.8 0.0017 3.7E-08 41.8 3.5 43 61-103 10-60 (74)
217 cd05851 Ig3_Contactin-1 Third 96.8 0.0024 5.1E-08 42.7 4.2 45 60-104 27-76 (88)
218 cd05895 Ig_Pro_neuregulin-1 Im 96.8 0.0029 6.2E-08 40.9 4.4 44 61-104 11-67 (76)
219 cd04973 Ig1_FGFR First immunog 96.8 0.0025 5.4E-08 41.6 4.1 41 63-103 22-67 (79)
220 cd05731 Ig3_L1-CAM_like Third 96.7 0.0016 3.4E-08 41.4 3.0 44 61-104 10-59 (71)
221 cd05725 Ig3_Robo Third immunog 96.7 0.0019 4.2E-08 40.8 3.4 43 61-103 10-57 (69)
222 PHA03376 BARF1; Provisional 96.7 0.0074 1.6E-07 45.8 6.5 70 146-216 139-210 (221)
223 cd05771 IgC_Tapasin_R Tapasin- 96.7 0.0028 6E-08 46.3 4.2 37 194-231 5-41 (139)
224 cd05868 Ig4_NrCAM Fourth immun 96.6 0.0019 4.1E-08 41.9 2.9 43 61-103 13-63 (76)
225 cd05747 Ig5_Titin_like M5, fif 96.6 0.0053 1.1E-07 41.3 5.1 45 60-104 29-82 (92)
226 PHA02633 hypothetical protein; 96.6 0.0076 1.6E-07 37.0 5.0 41 185-230 17-57 (63)
227 cd05743 Ig_Perlecan_D2_like Im 96.6 0.0029 6.2E-08 41.2 3.6 44 61-104 13-65 (78)
228 cd04972 Ig_TrkABC_d4 Fourth do 96.6 0.004 8.6E-08 41.7 4.3 45 61-105 27-80 (90)
229 cd04970 Ig6_Contactin_like Six 96.6 0.0029 6.2E-08 41.9 3.4 39 65-103 18-69 (85)
230 cd05856 Ig2_FGFRL1-like Second 96.6 0.0036 7.8E-08 40.8 3.8 44 61-104 21-71 (82)
231 cd04978 Ig4_L1-NrCAM_like Four 96.5 0.0031 6.8E-08 40.6 3.5 43 61-103 13-63 (76)
232 cd05854 Ig6_Contactin-2 Sixth 96.5 0.0022 4.9E-08 42.6 2.8 40 64-103 17-69 (85)
233 cd07689 Ig2_VCAM-1 Second immu 96.5 0.012 2.7E-07 40.0 6.3 69 143-214 12-87 (99)
234 cd05763 Ig_1 Subgroup of the i 96.5 0.0032 7E-08 40.5 3.4 44 60-103 9-62 (75)
235 cd04969 Ig5_Contactin_like Fif 96.5 0.0028 6E-08 40.6 3.0 44 61-104 13-62 (73)
236 KOG4597|consensus 96.4 0.0073 1.6E-07 51.8 5.4 88 138-227 203-293 (560)
237 cd04974 Ig3_FGFR Third immunog 96.3 0.0062 1.3E-07 40.8 3.9 24 82-105 56-79 (90)
238 cd05736 Ig2_Follistatin_like S 96.3 0.0094 2E-07 38.4 4.7 45 61-105 10-63 (76)
239 cd05735 Ig8_DSCAM Eight immuno 96.3 0.011 2.3E-07 39.5 5.0 44 61-104 13-70 (88)
240 cd05730 Ig3_NCAM-1_like Third 96.3 0.0051 1.1E-07 41.6 3.4 44 61-104 30-81 (95)
241 PF11465 Receptor_2B4: Natural 96.3 0.014 3E-07 40.0 5.3 46 179-226 62-107 (108)
242 cd05728 Ig4_Contactin-2-like F 96.2 0.0041 8.9E-08 41.2 2.5 44 61-104 26-74 (85)
243 cd05865 Ig1_NCAM-1 First immun 96.1 0.0085 1.9E-07 40.8 3.9 41 63-103 30-82 (96)
244 cd05869 Ig5_NCAM-1 Fifth immun 96.1 0.01 2.2E-07 40.4 4.2 43 61-103 29-85 (97)
245 cd05739 Ig3_RPTP_IIa_LAR_like 96.1 0.011 2.3E-07 37.5 3.9 43 60-104 12-59 (69)
246 cd05848 Ig1_Contactin-5 First 96.1 0.021 4.7E-07 38.6 5.6 44 60-103 30-81 (94)
247 cd05858 Ig3_FGFR-2 Third immun 96.0 0.0065 1.4E-07 40.7 2.8 24 81-104 55-78 (90)
248 cd05891 Ig_M-protein_C C-termi 96.0 0.011 2.3E-07 39.9 3.9 43 61-103 28-80 (92)
249 cd05721 IgV_CTLA-4 Immunoglobu 96.0 0.085 1.8E-06 37.0 8.3 71 138-210 5-94 (115)
250 cd04968 Ig3_Contactin_like Thi 96.0 0.0095 2.1E-07 39.6 3.5 43 61-103 28-75 (88)
251 cd05724 Ig2_Robo Second immuno 95.9 0.0082 1.8E-07 39.6 3.0 43 61-103 24-73 (86)
252 cd05733 Ig6_L1-CAM_like Sixth 95.9 0.018 4E-07 37.2 4.6 15 61-75 10-24 (77)
253 cd05740 Ig_CEACAM_D4 Fourth im 95.9 0.013 2.7E-07 39.5 3.9 42 63-104 31-78 (91)
254 cd05849 Ig1_Contactin-1 First 95.8 0.016 3.4E-07 39.2 4.2 44 60-103 30-80 (93)
255 cd05870 Ig5_NCAM-2 Fifth immun 95.8 0.016 3.5E-07 39.4 4.3 44 61-104 28-87 (98)
256 cd05732 Ig5_NCAM-1_like Fifth 95.8 0.019 4.1E-07 38.7 4.5 44 61-104 28-85 (96)
257 PF07679 I-set: Immunoglobulin 95.8 0.0085 1.8E-07 39.8 2.7 42 62-103 28-78 (90)
258 cd04986 IgC_CH2 CH2 domain (se 95.8 0.04 8.6E-07 37.7 5.9 81 131-214 3-90 (99)
259 cd05756 Ig1_IL1R_like First im 95.7 0.018 4E-07 39.0 3.9 43 61-103 31-82 (94)
260 PF08204 V-set_CD47: CD47 immu 95.6 0.046 1E-06 39.2 5.8 74 146-225 27-119 (130)
261 cd05850 Ig1_Contactin-2 First 95.5 0.019 4.1E-07 38.8 3.6 44 60-103 30-81 (94)
262 cd07693 Ig1_Robo First immunog 95.5 0.03 6.4E-07 37.7 4.6 44 61-104 28-87 (100)
263 PHA03042 CD47-like protein; Pr 95.5 0.092 2E-06 42.1 7.7 68 146-224 31-103 (286)
264 cd05726 Ig4_Robo Fhird immunog 95.5 0.02 4.3E-07 38.2 3.6 43 61-103 13-69 (90)
265 cd05874 Ig6_NrCAM Sixth immuno 95.3 0.026 5.6E-07 36.6 3.6 16 60-75 9-24 (77)
266 cd05773 Ig8_hNephrin_like Eigh 95.2 0.052 1.1E-06 37.8 5.2 44 61-104 35-93 (109)
267 cd05765 Ig_3 Subgroup of the i 95.2 0.03 6.5E-07 36.3 3.6 43 61-103 13-69 (81)
268 cd05873 Ig_Sema4D_like Immunog 95.0 0.024 5.2E-07 37.8 2.8 41 62-102 23-69 (87)
269 cd04967 Ig1_Contactin First Ig 94.9 0.036 7.9E-07 37.0 3.5 44 61-104 31-82 (91)
270 cd04977 Ig1_NCAM-1_like First 94.8 0.044 9.4E-07 36.8 3.7 40 64-103 29-79 (92)
271 cd05866 Ig1_NCAM-2 First immun 94.8 0.034 7.4E-07 37.5 3.2 39 65-103 30-78 (92)
272 cd05754 Ig3_Perlecan_like Thir 94.7 0.045 9.8E-07 36.0 3.6 43 62-104 30-75 (85)
273 cd05734 Ig7_DSCAM Seventh immu 94.6 0.051 1.1E-06 35.2 3.5 43 61-103 10-66 (79)
274 cd05752 Ig1_FcgammaR_like Frst 94.6 0.062 1.3E-06 35.0 3.9 37 64-102 31-67 (78)
275 cd05875 Ig6_hNeurofascin_like 94.6 0.085 1.8E-06 34.1 4.5 16 60-75 9-24 (77)
276 cd05885 Ig2_Necl-4 Second immu 94.5 0.085 1.8E-06 34.6 4.3 46 58-103 9-65 (80)
277 PF07354 Sp38: Zona-pellucida- 94.3 0.076 1.6E-06 42.5 4.3 49 159-213 11-60 (271)
278 smart00408 IGc2 Immunoglobulin 94.2 0.081 1.8E-06 31.6 3.7 42 61-102 14-60 (63)
279 cd05764 Ig_2 Subgroup of the i 94.2 0.045 9.8E-07 34.9 2.5 43 61-103 13-62 (74)
280 cd05742 Ig1_VEGFR_like First i 94.0 0.1 2.2E-06 34.2 4.1 24 81-104 49-72 (84)
281 PF00047 ig: Immunoglobulin do 93.9 0.11 2.4E-06 31.8 3.9 39 61-99 14-63 (64)
282 cd05722 Ig1_Neogenin First imm 93.8 0.08 1.7E-06 35.6 3.4 16 61-76 26-41 (95)
283 cd05753 Ig2_FcgammaR_like Seco 93.3 0.076 1.6E-06 34.9 2.5 42 62-103 28-70 (83)
284 cd04979 Ig_Semaphorin_C Immuno 93.3 0.072 1.6E-06 35.4 2.4 41 62-102 23-72 (89)
285 cd05727 Ig2_Contactin-2-like S 93.0 0.11 2.3E-06 35.4 2.8 42 61-102 31-81 (96)
286 cd05729 Ig2_FGFR_like Second i 93.0 0.17 3.8E-06 32.7 3.9 43 61-103 21-73 (85)
287 cd05749 Ig2_Tyro3_like Second 92.9 0.14 3.1E-06 33.5 3.3 42 60-103 24-69 (81)
288 cd05882 Ig1_Necl-1 First (N-te 92.8 0.19 4.2E-06 34.0 3.9 22 81-102 62-83 (95)
289 cd05759 Ig2_KIRREL3-like Secon 92.7 0.28 6E-06 31.9 4.6 18 59-76 10-27 (82)
290 cd05758 Ig5_KIRREL3-like Fifth 92.6 0.42 9E-06 32.3 5.4 43 61-103 28-87 (98)
291 cd05861 Ig1_PDGFR-alphabeta Fr 92.4 0.27 5.9E-06 32.3 4.2 41 62-102 14-67 (84)
292 PHA03052 Hypothetical protein; 92.3 0.66 1.4E-05 29.0 5.4 36 138-173 4-42 (69)
293 PHA03269 envelope glycoprotein 92.1 1.2 2.7E-05 38.8 8.6 84 128-213 326-417 (566)
294 PHA02865 MHC-like TNF binding 91.8 1.5 3.2E-05 36.8 8.5 65 148-213 216-304 (338)
295 PF06832 BiPBP_C: Penicillin-B 91.7 2.7 5.9E-05 27.8 10.1 73 130-217 9-85 (89)
296 cd05871 Ig_Semaphorin_classIII 90.9 0.23 4.9E-06 33.3 2.6 42 61-102 22-74 (91)
297 cd05896 Ig1_IL1RAPL-1_like Fir 90.6 0.29 6.3E-06 33.7 2.8 39 65-103 42-92 (104)
298 PHA03270 envelope glycoprotein 90.5 2.2 4.7E-05 36.8 8.4 80 82-174 183-265 (466)
299 cd05845 Ig2_L1-CAM_like Second 90.4 0.49 1.1E-05 32.1 3.8 42 61-102 31-80 (95)
300 PF06328 Lep_receptor_Ig: Ig-l 89.8 3.7 8E-05 27.4 7.6 66 138-208 10-80 (89)
301 PF05790 C2-set: Immunoglobuli 89.4 4.4 9.4E-05 26.5 7.7 27 198-225 51-78 (80)
302 cd05872 Ig_Sema4B_like Immunog 89.1 0.25 5.4E-06 32.8 1.6 39 63-101 24-67 (85)
303 cd05774 Ig_CEACAM_D1 First imm 88.7 1.6 3.4E-05 30.2 5.4 55 63-117 27-93 (105)
304 cd07701 Ig1_Necl-3 First (N-te 87.8 0.97 2.1E-05 30.4 3.9 22 81-102 62-83 (95)
305 PHA03273 envelope glycoprotein 87.3 7.9 0.00017 33.8 9.7 43 129-173 235-280 (486)
306 cd05883 Ig2_Necl-2 Second immu 87.1 1.7 3.7E-05 28.6 4.6 45 58-103 9-66 (82)
307 PHA02982 hypothetical protein; 86.4 4.1 8.8E-05 31.7 6.8 77 140-217 33-127 (251)
308 cd07690 Ig1_CD4 First immunogl 85.3 1.1 2.4E-05 30.2 3.1 23 81-103 65-87 (94)
309 PHA03271 envelope glycoprotein 84.4 12 0.00025 32.4 9.2 44 130-175 246-292 (490)
310 cd05884 Ig2_Necl-3 Second immu 84.0 3.7 8E-05 26.9 5.1 19 58-76 9-27 (83)
311 cd05751 Ig1_LILRB1_like First 82.3 2.7 5.9E-05 27.9 4.0 40 63-102 29-74 (91)
312 PF13927 Ig_3: Immunoglobulin 82.1 1.3 2.9E-05 27.4 2.3 39 63-101 30-74 (75)
313 PF13895 Ig_2: Immunoglobulin 81.5 1.2 2.6E-05 28.1 2.0 41 61-102 26-66 (80)
314 cd07705 Ig2_Necl-1 Second immu 78.6 5.1 0.00011 26.2 4.3 19 58-76 9-27 (83)
315 cd05860 Ig4_SCFR Fourth immuno 76.6 5.6 0.00012 27.3 4.1 46 59-104 28-88 (101)
316 PHA03189 UL14 tegument protein 76.3 28 0.0006 28.9 8.5 85 138-222 59-165 (348)
317 cd05761 Ig2_Necl-1-4_like Seco 75.5 4.1 9E-05 26.4 3.2 18 59-76 10-27 (82)
318 cd05862 Ig1_VEGFR First immuno 73.4 2.7 6E-05 27.6 2.0 22 81-102 50-71 (86)
319 cd05890 Ig2_Nectin-1_like Seco 72.4 16 0.00036 24.7 5.4 70 149-224 23-97 (98)
320 cd05717 Ig1_Necl-1-3_like Firs 72.0 13 0.00028 24.6 5.1 20 82-101 63-82 (95)
321 cd05898 Ig5_KIRREL3 Fifth immu 67.9 17 0.00036 24.7 4.9 25 81-105 64-89 (98)
322 cd05879 Ig_P0 Immunoglobulin ( 67.0 5.3 0.00012 28.0 2.4 23 81-103 80-102 (116)
323 cd05888 Ig1_Nectin-4_like Frst 62.0 5.6 0.00012 26.9 1.7 22 81-102 64-85 (100)
324 KOG1026|consensus 59.5 5.1 0.00011 37.4 1.4 74 140-227 201-274 (774)
325 PF11049 KSHV_K1: Glycoprotein 58.8 21 0.00045 22.3 3.5 44 150-211 2-45 (71)
326 KOG0613|consensus 58.8 21 0.00045 35.3 5.3 78 140-218 343-421 (1205)
327 cd05880 Ig_EVA1 Immunoglobulin 58.0 7.8 0.00017 27.0 1.9 21 82-102 80-100 (115)
328 cd05886 Ig1_Nectin-1_like Firs 56.9 9.2 0.0002 26.0 2.1 23 80-102 62-84 (99)
329 PHA02914 Immunoglobulin-like d 55.2 45 0.00098 28.8 6.1 75 139-213 272-369 (500)
330 PHA03112 IL-18 binding protein 53.6 76 0.0016 23.2 6.3 27 143-169 35-63 (141)
331 cd05715 Ig_P0-like Immunoglobu 52.5 11 0.00023 26.2 1.9 22 81-102 80-101 (116)
332 KOG3611|consensus 49.4 49 0.0011 31.3 6.0 73 148-225 571-647 (737)
333 PF15096 G6B: G6B family 48.9 34 0.00073 26.2 4.0 26 198-227 82-107 (224)
334 PF02440 Adeno_E3_CR1: Adenovi 47.1 68 0.0015 19.9 5.1 21 143-167 2-22 (63)
335 PHA03240 envelope glycoprotein 44.9 69 0.0015 25.1 5.2 38 184-225 103-143 (258)
336 PHA03283 envelope glycoprotein 31.6 2.1E+02 0.0046 25.8 6.8 39 186-229 134-172 (542)
337 PF07354 Sp38: Zona-pellucida- 29.8 84 0.0018 25.6 3.8 39 62-100 11-56 (271)
338 PF02480 Herpes_gE: Alphaherpe 24.1 68 0.0015 28.3 2.6 37 154-210 253-289 (439)
339 COG5475 Uncharacterized small 23.7 1.8E+02 0.0038 17.5 4.3 16 202-217 28-43 (60)
340 PHA02914 Immunoglobulin-like d 21.7 2E+02 0.0044 25.1 4.7 37 194-230 85-121 (500)
341 KOG0613|consensus 20.8 43 0.00093 33.3 0.7 25 150-175 209-233 (1205)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.82 E-value=6.9e-19 Score=121.47 Aligned_cols=97 Identities=22% Similarity=0.277 Sum_probs=79.4
Q ss_pred CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211 (238)
Q Consensus 132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N 211 (238)
|.|...+.++.+..|+.+.|.|.+.|.|+|.+.|+|+|..|... ....+........ +.|..+..+|+|.|+|.|.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~-~~~~~~~~~~~s~--L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG-EGIKIENTENSSK--LTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC-CcEEEEecCCeeE--EEECCCChhhCEEEEEEEEc
Confidence 67888889999999999999999999999999999999998743 2222222222222 23778899999999999999
Q ss_pred CCCceeEEEEEEEEccCCCCC
Q psy18191 212 ELGFARSKNATLDVAGKISTA 232 (238)
Q Consensus 212 ~~G~~~s~~~~L~V~~~~~~~ 232 (238)
.+|... ..+.|.|.++|++|
T Consensus 78 ~~G~~~-~~~~l~V~~~P~pP 97 (98)
T cd05762 78 KLGSRQ-AQVNLTVVDKPDPP 97 (98)
T ss_pred CCCcee-EEEEEEEecCCCCC
Confidence 999997 59999999999887
No 2
>KOG3513|consensus
Probab=99.81 E-value=2.1e-18 Score=156.86 Aligned_cols=150 Identities=23% Similarity=0.355 Sum_probs=120.1
Q ss_pred CCCccEEEecccc-ccccce-----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEE
Q psy18191 61 YPKPICLRFQDLL-PQSKQG-----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRI 134 (238)
Q Consensus 61 ~~~~~~~w~~~~~-~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i 134 (238)
.|.|++.|.|.+. +....- -.-|.|.++..+|+|.|.|.+.|.+. . ........+.++|.+
T Consensus 268 ~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G--~-----------~~~~~~v~v~a~P~w 334 (1051)
T KOG3513|consen 268 NPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRG--S-----------ATHSGHVTVYAPPYW 334 (1051)
T ss_pred CCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccc--c-----------ceeeEEEEEecCchh
Confidence 4588999999877 443221 23577788999999999988877533 1 111222336689999
Q ss_pred EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191 135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214 (238)
Q Consensus 135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G 214 (238)
+..+++..+..|+++.|.|.+.|.|.|.|+|++||.++.......+..+..|.|.+..+ +..|+|.|+|.|+|.+|
T Consensus 335 ~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v----~~~dsg~YQC~A~Nk~G 410 (1051)
T KOG3513|consen 335 LQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNV----QESDSGVYQCIAENKYG 410 (1051)
T ss_pred hcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEec----ccccCeEEEeeeecccc
Confidence 99999999999999999999999999999999999999865334456778899986666 99999999999999999
Q ss_pred ceeEEEEEEEEccC
Q psy18191 215 FARSKNATLDVAGK 228 (238)
Q Consensus 215 ~~~s~~~~L~V~~~ 228 (238)
... ..+.|.|...
T Consensus 411 ~i~-anA~L~V~a~ 423 (1051)
T KOG3513|consen 411 TIY-ANAELKVLAS 423 (1051)
T ss_pred eEe-eeeEEEEEcc
Confidence 997 4999999876
No 3
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.79 E-value=2.3e-18 Score=116.59 Aligned_cols=88 Identities=26% Similarity=0.336 Sum_probs=73.6
Q ss_pred CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~ 210 (238)
+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+.. ..++...++.|. |..+..+|+|.|+|.|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~---~~~~~~~~~~L~----I~~v~~~D~G~Y~C~A~ 73 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPA---TAEISMSGAVLK----IFNIQPEDEGTYECEAE 73 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCC---CCEEecCCCEEE----ECcCChhhCEEEEEEEE
Confidence 57888888899999999999999999999999999999987753 233444455565 45559999999999999
Q ss_pred eCCCceeEEEEEEEEc
Q psy18191 211 NELGFARSKNATLDVA 226 (238)
Q Consensus 211 N~~G~~~s~~~~L~V~ 226 (238)
|..|... ..+.|.|+
T Consensus 74 N~~G~~~-~~~~l~V~ 88 (88)
T cd05851 74 NIKGKDK-HQARVYVQ 88 (88)
T ss_pred cCCCceE-EEEEEEEC
Confidence 9999996 59999884
No 4
>KOG3513|consensus
Probab=99.76 E-value=1e-17 Score=152.37 Aligned_cols=193 Identities=19% Similarity=0.280 Sum_probs=135.1
Q ss_pred hhhcccceeEEeecCCCCCCCCCCCCcceeeeeccccccCCC--------------cccccCCCccEEEeccccccccc-
Q psy18191 14 FVENSSQRCIKINLPKASHSPSSRPDQNYLRVSGFADLTQPP--------------ARGGFYPKPICLRFQDLLPQSKQ- 78 (238)
Q Consensus 14 ~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~v~~~~~~~~pp--------------~~~~~~~~~~~~w~~~~~~~~~~- 78 (238)
+.+.+-|.|++.|.-..... ..++.+...+.-...| +..-..|.|++.|++++.++...
T Consensus 303 ~~D~G~Y~C~AeN~~G~~~~------~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~ 376 (1051)
T KOG3513|consen 303 YEDAGEYECIAENSRGSATH------SGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAE 376 (1051)
T ss_pred cCCCeEEEEEEeccccccee------eEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccC
Confidence 56788999999998774432 2344444333222222 22224568999999999876532
Q ss_pred e-------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCc-cCCEEEeCCCc--eEEeCCCc
Q psy18191 79 G-------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGY-RVPRITEHPAS--AVVPRHEP 148 (238)
Q Consensus 79 g-------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~-~~P~i~~~~~~--~~~~~G~~ 148 (238)
. .--|++.++...|+|.|.|.+.|.+. .++ ..+.+.|. .+|.|...+.. ..+..|.+
T Consensus 377 r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G------~i~-------anA~L~V~a~~P~f~~~p~~~~~~a~~g~~ 443 (1051)
T KOG3513|consen 377 RDPRYKIDDGTLIISNVQESDSGVYQCIAENKYG------TIY-------ANAELKVLASAPVFPLNPVERKVMAVVGGT 443 (1051)
T ss_pred CCcceEEeCCEEEEEecccccCeEEEeeeecccc------eEe-------eeeEEEEEccCCCCCCCccceEEEEEeCCe
Confidence 1 13566778888999999988877533 221 11112122 34666665443 46688999
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 228 (238)
+.+.|.+.+.|.|.++|++++..+.. +++.....+|+|.|..+ +.+|+|.|+|.|.|.+|.+.+ .+.|.|..+
T Consensus 444 v~i~C~~~asP~p~~~W~k~~~~~~~--~~r~~i~edGtL~I~n~----t~~DaG~YtC~A~N~~G~a~~-~~~L~Vkd~ 516 (1051)
T KOG3513|consen 444 VTIDCKPFASPKPKVSWLKGGEKLLQ--SGRIRILEDGTLEISNV----TRSDAGKYTCVAENKLGKAES-TGNLIVKDA 516 (1051)
T ss_pred EEEeeccCCCCcceEEEEcCCccccc--CceEEECCCCcEEeccc----CcccCcEEEEEEEcccCccce-EEEEEEecC
Confidence 99999999999999999999984443 45555668999985555 999999999999999999985 999999877
Q ss_pred CCCC
Q psy18191 229 ISTA 232 (238)
Q Consensus 229 ~~~~ 232 (238)
+.+.
T Consensus 517 tri~ 520 (1051)
T KOG3513|consen 517 TRIT 520 (1051)
T ss_pred ceEE
Confidence 6543
No 5
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.75 E-value=3.8e-17 Score=113.03 Aligned_cols=95 Identities=55% Similarity=0.981 Sum_probs=75.9
Q ss_pred CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeecc---CCccEEEecCCcEEEEEeec-CCCCCCCeEEE
Q psy18191 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE---IGSHRILLPAGSLFFLSLVH-GKKDTDSGVYW 206 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~---~~~~~~~~~~~~l~~~~vi~-~v~~~d~G~Y~ 206 (238)
+|.|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+... .........++.+.+..++. .+..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 588888899999999999999999999999999999999988752 12233445566665544432 23789999999
Q ss_pred EEEEeCCCceeEEEEEEEE
Q psy18191 207 CVARNELGFARSKNATLDV 225 (238)
Q Consensus 207 C~a~N~~G~~~s~~~~L~V 225 (238)
|.|.|.+|...+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 9999999996667888877
No 6
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.72 E-value=6.1e-17 Score=105.98 Aligned_cols=74 Identities=35% Similarity=0.619 Sum_probs=61.0
Q ss_pred CCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191 145 RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD 224 (238)
Q Consensus 145 ~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~ 224 (238)
+|+++.|.|.+.|.|.|.+.|+|++..+... .......++.|.+..+ ..+|+|.|+|.|.|.+|... ..+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~~~~~L~I~~v----~~~D~G~Y~C~A~N~~G~~~-~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD--RRHLVLSSGTLRISRV----ALHDQGQYECQAVNIVGSQR-TVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCC--CCeEEccCCeEEEeeC----CHHhCEEEEEEEEeCCCcee-EEEEEe
Confidence 5899999999999999999999999987642 2333445667765554 99999999999999999997 488887
Q ss_pred E
Q psy18191 225 V 225 (238)
Q Consensus 225 V 225 (238)
|
T Consensus 74 V 74 (74)
T cd05745 74 V 74 (74)
T ss_pred C
Confidence 5
No 7
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.72 E-value=1.5e-16 Score=108.99 Aligned_cols=87 Identities=33% Similarity=0.626 Sum_probs=67.2
Q ss_pred CEEEeCCCceEEe---CCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCC-CCCCeEEEE
Q psy18191 132 PRITEHPASAVVP---RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK-DTDSGVYWC 207 (238)
Q Consensus 132 P~i~~~~~~~~~~---~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~-~~d~G~Y~C 207 (238)
|.|+..|.++.+. +|+++.|.|.+.|.|.|.++|+++|..+... ...++...++.|.+. .+. .+|+|.|+|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~-~~~~~~~~~g~L~i~----~~~~~~D~G~Y~C 76 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTE-SDYRYSLIDGNLIIS----NPSEVKDSGRYQC 76 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccC-CCceEEeeCCeEEEc----cCCccCcCEEEEE
Confidence 6777777776654 4789999999999999999999999988643 233445556776543 334 689999999
Q ss_pred EEEeCCCceeEEEEEE
Q psy18191 208 VARNELGFARSKNATL 223 (238)
Q Consensus 208 ~a~N~~G~~~s~~~~L 223 (238)
.|.|.+|...+..+.|
T Consensus 77 ~A~N~~G~~~S~~~~l 92 (94)
T cd05848 77 LATNSIGSILSREALL 92 (94)
T ss_pred EEEcCCCeEEeccEEE
Confidence 9999999997655554
No 8
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.72 E-value=1.8e-16 Score=107.32 Aligned_cols=88 Identities=25% Similarity=0.363 Sum_probs=71.0
Q ss_pred CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~ 210 (238)
||.+...|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ......++.|. |..++.+|+|.|+|.|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~---~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~ 73 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS---AEISMSGAVLK----IPNIQFEDEGTYECEAE 73 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc---cEEEEeCCEEE----ECCCCcccCEEEEEEEE
Confidence 456667788889999999999999999999999999988766532 22224456665 55569999999999999
Q ss_pred eCCCceeEEEEEEEEc
Q psy18191 211 NELGFARSKNATLDVA 226 (238)
Q Consensus 211 N~~G~~~s~~~~L~V~ 226 (238)
|..|... ..+.|.|+
T Consensus 74 N~~G~~~-~~~~l~V~ 88 (88)
T cd04968 74 NIKGKDT-HQGRIYVQ 88 (88)
T ss_pred ECCCcEE-EEEEEEEC
Confidence 9999996 59998874
No 9
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.72 E-value=2.5e-16 Score=106.53 Aligned_cols=86 Identities=20% Similarity=0.311 Sum_probs=66.3
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe-cCCc-EEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGS-LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~-l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L 223 (238)
|+.+.|.|.+.|.|+|.+.|++++..+........+.. ..+. ....+.|..+..+|+|.|+|.|.|.+|... ..+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR-GIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce-EEEEE
Confidence 78999999999999999999999988764321111221 1222 222334777899999999999999999997 59999
Q ss_pred EEccCCCCC
Q psy18191 224 DVAGKISTA 232 (238)
Q Consensus 224 ~V~~~~~~~ 232 (238)
.|..+|++|
T Consensus 80 ~V~~~P~~P 88 (88)
T cd05735 80 TVQEPPDPP 88 (88)
T ss_pred EEeCCCCCC
Confidence 999988765
No 10
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.71 E-value=2.6e-16 Score=107.83 Aligned_cols=89 Identities=33% Similarity=0.547 Sum_probs=69.0
Q ss_pred CEEEeCCCceEEeCC---CcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191 132 PRITEHPASAVVPRH---EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV 208 (238)
Q Consensus 132 P~i~~~~~~~~~~~G---~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~ 208 (238)
|.|...|.++.+.+| +++.|.|.+.|+|.|.++|+++|..+... ...++...++.|.+..+ +...|+|.|+|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~g~L~I~~~---~~~~D~G~Y~C~ 77 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFA-PESRYTLVAGNLVINNP---QKARDAGSYQCL 77 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccC-CCceEEEECCeEEEccC---CccCcCEEEEEE
Confidence 677777888877666 57999999999999999999999988643 22344445677765432 246899999999
Q ss_pred EEeCCCceeEEEEEEE
Q psy18191 209 ARNELGFARSKNATLD 224 (238)
Q Consensus 209 a~N~~G~~~s~~~~L~ 224 (238)
|.|..|...+..+.|.
T Consensus 78 A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 78 AINRCGTVVSREANLR 93 (94)
T ss_pred EEcCcCcEEEEEEEEe
Confidence 9999999977666664
No 11
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.71 E-value=3.2e-16 Score=108.02 Aligned_cols=95 Identities=27% Similarity=0.393 Sum_probs=69.8
Q ss_pred cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccC--CccEEEecCCcEEEEEeecCCCCCCCeEEEE
Q psy18191 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI--GSHRILLPAGSLFFLSLVHGKKDTDSGVYWC 207 (238)
Q Consensus 130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C 207 (238)
++|+|...+....+..|+.+.|.|.+.|.|.|.++|++++..+.... ...++..........+.|+.++.+|+|.|+|
T Consensus 1 ~~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C 80 (97)
T cd05869 1 AKPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC 80 (97)
T ss_pred CCceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence 36888877776667778999999999999999999999987765321 1112222221111223367779999999999
Q ss_pred EEEeCCCceeEEEEEEEE
Q psy18191 208 VARNELGFARSKNATLDV 225 (238)
Q Consensus 208 ~a~N~~G~~~s~~~~L~V 225 (238)
.|.|.+|... .+++|.|
T Consensus 81 ~A~N~~G~~~-~~~~l~v 97 (97)
T cd05869 81 TASNTIGQDS-QSMYLEV 97 (97)
T ss_pred EEecCCCCee-EEEEEEC
Confidence 9999999996 5888875
No 12
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.71 E-value=1.4e-16 Score=104.81 Aligned_cols=75 Identities=31% Similarity=0.582 Sum_probs=61.8
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
|+++.|.|.+.|.|.|.++|+++|..+.......+....++.|. |..+..+|+|.|+|.|.|..|...+ .++|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALI----LTDVQPSDTAVYQCEARNRHGNLLA-NAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEE----ECCCChhhCEEEEEEEECCCCeEEE-EEEEEE
Confidence 78899999999999999999999998865322334445566665 5566999999999999999999974 899887
No 13
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.71 E-value=1.7e-16 Score=106.72 Aligned_cols=83 Identities=33% Similarity=0.519 Sum_probs=69.0
Q ss_pred EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191 135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214 (238)
Q Consensus 135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G 214 (238)
...|.+..+..|+++.|.|.+.|.|.|.+.|++++..+.. ..++...++.|.+..+ ..+|+|.|+|.|.|..|
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~---~~~~~~~~~~L~i~~~----~~~D~G~Y~C~a~N~~G 75 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS---ENRIEVEAGDLRITKL----SLSDSGMYQCVAENKHG 75 (85)
T ss_pred cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC---CCeEEEeCCEEEEeeC----CHHHCEEEEEEEECCCC
Confidence 4457788999999999999999999999999999998763 2344456677775554 99999999999999999
Q ss_pred ceeEEEEEEEE
Q psy18191 215 FARSKNATLDV 225 (238)
Q Consensus 215 ~~~s~~~~L~V 225 (238)
... .++.|.|
T Consensus 76 ~~~-~~~~l~V 85 (85)
T cd05728 76 TIY-ASAELAV 85 (85)
T ss_pred eEE-EEEEEEC
Confidence 996 4888865
No 14
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.70 E-value=4.2e-16 Score=104.93 Aligned_cols=83 Identities=20% Similarity=0.331 Sum_probs=63.9
Q ss_pred ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219 (238)
Q Consensus 140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~ 219 (238)
.+.+..|+.+.|.|.+.|.|.|.+.|++++.++........+..... ...+.|..+..+|+|.|+|.|.|.+|+.. .
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~--~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~-~ 80 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKD--LSSFVIEGAEREDEGVYTITVTNPVGEDH-A 80 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCC--eEEEEECCCccCcCEEEEEEEEeCCCcEE-E
Confidence 56788999999999999999999999999998875311122222222 11223778899999999999999999996 5
Q ss_pred EEEEEE
Q psy18191 220 NATLDV 225 (238)
Q Consensus 220 ~~~L~V 225 (238)
.+.|.|
T Consensus 81 ~~~l~V 86 (86)
T cd05894 81 SLFVKV 86 (86)
T ss_pred EEEEEC
Confidence 888765
No 15
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.70 E-value=3.3e-16 Score=106.89 Aligned_cols=90 Identities=22% Similarity=0.382 Sum_probs=69.8
Q ss_pred cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209 (238)
Q Consensus 130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a 209 (238)
.||.|...|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+... ........+.. ....|..+..+|+|.|+|.|
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~-~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS--QRHQITSTEYK-STFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCC--CcEEEEEcCCe-eEEEECCCCcccCEeEEEEE
Confidence 4788888899999999999999999999999999999999887642 22222222111 11126777999999999999
Q ss_pred EeCCCceeEEEEEE
Q psy18191 210 RNELGFARSKNATL 223 (238)
Q Consensus 210 ~N~~G~~~s~~~~L 223 (238)
.|.+|... ..+.|
T Consensus 79 ~N~~G~~~-~~~~l 91 (92)
T cd05747 79 ENSEGKQE-AQFTL 91 (92)
T ss_pred EcCCCCEe-EEEEe
Confidence 99999986 47765
No 16
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=1.2e-16 Score=104.11 Aligned_cols=73 Identities=30% Similarity=0.503 Sum_probs=60.1
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
|+++.|.|.+.|.|.|.+.|+|++..+.. ..+.....++.|. |..++.+|+|.|+|.|.|..|+..+ ++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~--~~r~~~~~~g~L~----I~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVN--NSRISIWDDGSLE----ILNITKLDEGSYTCFAENNRGKANS-TGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEeccc--CCCEEEcCCCEEE----ECcCChhHCEEEEEEEECCCCceeE-EEEEEC
Confidence 68899999999999999999999987754 2333344667776 4555999999999999999999974 888875
No 17
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.70 E-value=5e-16 Score=106.66 Aligned_cols=92 Identities=43% Similarity=0.750 Sum_probs=71.6
Q ss_pred EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecC-CCCCCCeEEEEEEEeC
Q psy18191 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG-KKDTDSGVYWCVARNE 212 (238)
Q Consensus 134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~-v~~~d~G~Y~C~a~N~ 212 (238)
|...|.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+............++.+.+..+... ....|.|.|+|.|.|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 345677888889999999999999999999999999988754232334455677766554211 1588999999999999
Q ss_pred -CCceeEEEEEEEE
Q psy18191 213 -LGFARSKNATLDV 225 (238)
Q Consensus 213 -~G~~~s~~~~L~V 225 (238)
.|...+..+.|.|
T Consensus 82 ~~G~~~s~~~~l~v 95 (95)
T cd05722 82 SLGSIVSRTARLTV 95 (95)
T ss_pred ccCcEEEeeeEEeC
Confidence 9998777888765
No 18
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.70 E-value=2.2e-16 Score=103.80 Aligned_cols=75 Identities=29% Similarity=0.540 Sum_probs=59.7
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
|+++.|.|.+.|.|.|.|+|+++|.++............++.|. |..++..|.|.|+|.|.|..|...+ ++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~----i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTII----FSKVQERSSAVYQCNASNEYGYLLA-NAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEE----ECCCCHhhCEEEEEEEEcCCCEEEE-EEEEEe
Confidence 68899999999999999999999998864322222233344444 5566999999999999999999974 999887
No 19
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.69 E-value=3.7e-16 Score=106.72 Aligned_cols=88 Identities=28% Similarity=0.538 Sum_probs=67.3
Q ss_pred CCEEEeCCCceEEeCC---CcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCC-CCCCeEEE
Q psy18191 131 VPRITEHPASAVVPRH---EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK-DTDSGVYW 206 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G---~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~-~~d~G~Y~ 206 (238)
+|.|...|....+.++ +.+.|.|.+.|.|.|.++|++++..+... ..+....++.|.+ ..+. .+|+|.|+
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~--~~~~~~~~g~L~I----~~~~~~~D~G~Y~ 74 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT--NDRYSMVGGNLVI----NNPDKYKDAGRYV 74 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC--CCeEEEECCEEEE----CcCCcCCCCEEEE
Confidence 3677777777666554 47999999999999999999999887532 2344455677764 4444 58999999
Q ss_pred EEEEeCCCceeEEEEEEE
Q psy18191 207 CVARNELGFARSKNATLD 224 (238)
Q Consensus 207 C~a~N~~G~~~s~~~~L~ 224 (238)
|.|.|.+|...+..++|.
T Consensus 75 C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 75 CIVSNIYGKVRSREATLS 92 (93)
T ss_pred EEEEeCcceEEEccEEEe
Confidence 999999999977666664
No 20
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.69 E-value=3.6e-16 Score=107.39 Aligned_cols=91 Identities=27% Similarity=0.499 Sum_probs=69.2
Q ss_pred CCEEEeCC--CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCC-cEEEEEeecCCCCCCCeEEEE
Q psy18191 131 VPRITEHP--ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG-SLFFLSLVHGKKDTDSGVYWC 207 (238)
Q Consensus 131 ~P~i~~~~--~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~-~l~~~~vi~~v~~~d~G~Y~C 207 (238)
||.|...+ .+..+..|+++.|.|.+.|.|.|.+.|+++|..+... .........+ .|. |..++.+|+|.|+|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~~~~L~----I~~v~~~D~G~Y~C 75 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG-EEKYSFNEDGSEMT----ILDVDKLDEAEYTC 75 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC-CCEEEEeCCCCEEE----ECCCChhhCEEEEE
Confidence 45554432 4567899999999999999999999999999988643 1222222222 344 56669999999999
Q ss_pred EEEeCCCceeEEEEEEEEcc
Q psy18191 208 VARNELGFARSKNATLDVAG 227 (238)
Q Consensus 208 ~a~N~~G~~~s~~~~L~V~~ 227 (238)
.|.|.+|... ..+.|.|..
T Consensus 76 ~a~N~~G~~~-~~~~L~V~~ 94 (95)
T cd05730 76 IAENKAGEQE-AEIHLKVFA 94 (95)
T ss_pred EEEcCCCeEE-EEEEEEEEe
Confidence 9999999997 599999864
No 21
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.69 E-value=3.1e-16 Score=102.57 Aligned_cols=74 Identities=28% Similarity=0.510 Sum_probs=55.8
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEec-CCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP-AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
+.|.|.+.|.|.|.+.|+|++..+..+.....+... .+.. .+.|+.+..+|+|.|+|.|.|.+|...+ .+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRV--TLLIKNVNKKDAGWYTVSAVNEAGVATC-HARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcE--EEEECCCChhhCEEEEEEEEcCcCeEEE-EEEEeC
Confidence 479999999999999999999988743221122222 2321 1236777999999999999999999975 888875
No 22
>KOG4221|consensus
Probab=99.69 E-value=1.2e-16 Score=145.65 Aligned_cols=193 Identities=22% Similarity=0.285 Sum_probs=138.7
Q ss_pred hcccceeEEeecCCCCCCCCCCCCcce----eeeeccccccCCCc-----------ccccCCCccEEEeccccccccce-
Q psy18191 16 ENSSQRCIKINLPKASHSPSSRPDQNY----LRVSGFADLTQPPA-----------RGGFYPKPICLRFQDLLPQSKQG- 79 (238)
Q Consensus 16 ~~~~~~~i~~~~~~~~~~~~~r~~~~~----~~v~~~~~~~~pp~-----------~~~~~~~~~~~w~~~~~~~~~~g- 79 (238)
+.+.|||+..+...-..|..++..... .+-..|.+.+.+-. .....++|++.|.+++..+...+
T Consensus 204 d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~ 283 (1381)
T KOG4221|consen 204 DTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSY 283 (1381)
T ss_pred CCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecce
Confidence 357899999888776666655433220 00001222222211 11234589999999988665542
Q ss_pred ------EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEE
Q psy18191 80 ------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNC 153 (238)
Q Consensus 80 ------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C 153 (238)
...|.+.+++.+|+|.|+|.+++..+.+. .. ....|..+|.|+..|.++.+.++.++.|.|
T Consensus 284 rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~id--------as-----aev~V~a~P~~~~~p~~l~A~e~~die~ec 350 (1381)
T KOG4221|consen 284 RIVLVGGSSLLISNATDDDSGKYTCRATNTNDSID--------AS-----AEVTVLAPPGFTKAPTTLVAHESMDIEFEC 350 (1381)
T ss_pred EEEEecccceEEeccccccCceEEEEecCCCcccc--------cc-----eEEEEEcCCCCCCCCcceeeeeccceeEeC
Confidence 34677889999999999998888544221 11 122367899999999999999999999999
Q ss_pred EEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191 154 KADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228 (238)
Q Consensus 154 ~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 228 (238)
.+.|.|.|.+.|+|+|..+.. ..++....++.+.++.+ -..|.|.|+|.|+|..|... ..+.|.|...
T Consensus 351 ~~~g~p~p~v~w~kNgd~~ip--sdy~ki~~~~~lrIlgi----~~sdeg~yQcvaen~~G~a~-a~a~l~vv~~ 418 (1381)
T KOG4221|consen 351 PVSGKPIPTVRWYKNGDRIIP--SDYFKIVGGGNLRILGI----VKSDEGFYQCVAENDAGSAQ-AAAQLEVVPQ 418 (1381)
T ss_pred CCCCCCcceEEEEecCcccCc--ccceEecCCCCcEEEEE----ecccchhhhhhhccCccccc-chhhheeccC
Confidence 999999999999999998886 34444455555888777 88999999999999999997 5888866544
No 23
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.69 E-value=4.7e-16 Score=105.76 Aligned_cols=88 Identities=27% Similarity=0.439 Sum_probs=68.5
Q ss_pred CEEEeC--CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191 132 PRITEH--PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209 (238)
Q Consensus 132 P~i~~~--~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a 209 (238)
|.|... +.++.+.+|+++.|.|.+.|. .|.+.|++++..+... .......++.|. |..++.+|+|.|+|.|
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~--~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a 74 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP--RLQLSNDNRTLT----FNNVTRSDTGHYQCEA 74 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC--CEEEeCCCCEEE----ECcCChhhCEEEEEEE
Confidence 566433 456789999999999999999 9999999999887632 111122334555 5556999999999999
Q ss_pred EeCCCceeEEEEEEEEc
Q psy18191 210 RNELGFARSKNATLDVA 226 (238)
Q Consensus 210 ~N~~G~~~s~~~~L~V~ 226 (238)
.|.+|...+..+.|.|.
T Consensus 75 ~N~~G~~~S~~~~L~V~ 91 (91)
T cd05740 75 SNEVSNMTSDPYILNVN 91 (91)
T ss_pred EcCCCCEEeeeEEEEeC
Confidence 99999988888888874
No 24
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.69 E-value=8.4e-16 Score=104.91 Aligned_cols=85 Identities=22% Similarity=0.425 Sum_probs=65.7
Q ss_pred CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR 217 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~ 217 (238)
|..+.+.+|+++.|.|.+.|.|.|.+.|++++..+... ....+....+... .+.|..+..+|+|.|+|.|.|.+|...
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~-~~~~~~~~~~~~~-~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS-DHYNVKVEQGKYA-SLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC-CCEEEEEcCCCEE-EEEEccCChhhCEEEEEEEEECCCcce
Confidence 55688899999999999999999999999999988653 2223333323221 223677799999999999999999996
Q ss_pred EEEEEEEE
Q psy18191 218 SKNATLDV 225 (238)
Q Consensus 218 s~~~~L~V 225 (238)
..+.|.|
T Consensus 86 -~~~~v~v 92 (92)
T cd05737 86 -VDVTVSV 92 (92)
T ss_pred -EEEEEeC
Confidence 4777764
No 25
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.69 E-value=5.2e-16 Score=100.66 Aligned_cols=71 Identities=27% Similarity=0.578 Sum_probs=57.6
Q ss_pred cEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 148 PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 148 ~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
++.|.|.+.|.|.|.++|+|+|..+... .......++.+.+.. +..+|+|.|+|.|.|..|+.. .++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~--~~~~~~~~~~l~i~~----v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPS--DYFKIVKEHNLQVLG----LVKSDEGFYQCIAENDVGNVQ-ASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCC--CCEEEEecCCEEEEc----CCcccCEEEEEEEEcCCCEEE-EEEEEEC
Confidence 4789999999999999999999887642 333334566776554 499999999999999999997 4888875
No 26
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.68 E-value=5.3e-16 Score=101.57 Aligned_cols=74 Identities=30% Similarity=0.597 Sum_probs=55.9
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
+.|.|.+.|.|.|.+.|+|++..+... ..++.. .++.-...+.|..+..+|+|.|+|.|.|.+|+..+ ++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHN--TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSC-TARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCC--CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE-EEEEeC
Confidence 479999999999999999999988753 223322 22211111236777999999999999999999974 888875
No 27
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.67 E-value=1.4e-15 Score=103.43 Aligned_cols=86 Identities=22% Similarity=0.381 Sum_probs=64.5
Q ss_pred eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191 136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF 215 (238)
Q Consensus 136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~ 215 (238)
..|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+... ............ ...|..+..+|.|.|+|.|.|..|.
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~-~~~~~~~~~~~~--~L~I~~v~~~D~g~Y~C~A~N~~G~ 81 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT-RTDTLETTVDIY--NLQLSNITSETQTTVTCTAENPVGQ 81 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC-ccEEEEecCCEE--EEEEecCCcccCEEEEEEEECCCCc
Confidence 4566777999999999999999999999999999887542 111111111111 1226677999999999999999999
Q ss_pred eeEEEEEEEE
Q psy18191 216 ARSKNATLDV 225 (238)
Q Consensus 216 ~~s~~~~L~V 225 (238)
.. ..+.|.|
T Consensus 82 ~~-~~~~L~v 90 (90)
T cd04972 82 AN-VSVQVTV 90 (90)
T ss_pred ee-EEEEEeC
Confidence 96 4888864
No 28
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.67 E-value=7.4e-16 Score=106.63 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=65.2
Q ss_pred CceEEeCCCcEEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEecC---CcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191 139 ASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPA---GSLFFLSLVHGKKDTDSGVYWCVARNELG 214 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~---~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G 214 (238)
..+.+.+|+++.|.|.+.| .|+|.+.|+|||.+|... ....+...+ ......+.|..+..+|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK-LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC-cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 4678899999999999999 899999999999998743 121221111 11122223566699999999999999999
Q ss_pred ceeEEEEEEEEc
Q psy18191 215 FARSKNATLDVA 226 (238)
Q Consensus 215 ~~~s~~~~L~V~ 226 (238)
... .++.|.|.
T Consensus 90 ~~~-~t~~L~V~ 100 (101)
T cd04975 90 SKS-LTFELYVN 100 (101)
T ss_pred cEE-EEEEEEEE
Confidence 996 59999885
No 29
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.67 E-value=1.7e-15 Score=102.76 Aligned_cols=90 Identities=32% Similarity=0.581 Sum_probs=73.6
Q ss_pred CEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211 (238)
Q Consensus 132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N 211 (238)
|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+..+ ....+....+...+. |..+..+|+|.|+|.|.|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~-~~~~~~~~~~~~~L~--I~~v~~~D~G~Y~C~~~n 77 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSS-QRYQIESDGGSSSLT--IKNVTREDAGTYTCVASN 77 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESS-SSEEEEEETTEEEEE--ESSESGGGSEEEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeee-eeeeeecccceeEEc--cCCCChhhCEEEEEEEEE
Confidence 67888889999999999999999999999999999999999863 233333333333332 678899999999999999
Q ss_pred CCCceeEEEEEEEE
Q psy18191 212 ELGFARSKNATLDV 225 (238)
Q Consensus 212 ~~G~~~s~~~~L~V 225 (238)
..|... ..+.|.|
T Consensus 78 ~~g~~~-~~~~l~V 90 (90)
T PF07679_consen 78 SSGEAT-ASVNLTV 90 (90)
T ss_dssp TTEEEE-EEEEEEE
T ss_pred CCCEEE-EEEEEEC
Confidence 999997 5888876
No 30
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.67 E-value=1.8e-15 Score=104.09 Aligned_cols=93 Identities=28% Similarity=0.378 Sum_probs=68.4
Q ss_pred CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccC--CccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI--GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV 208 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~ 208 (238)
+|.|.. +.+..+.+|+++.|.|.+.|.|.|.+.|++++..+.... ...++..........+.|..+..+|+|.|+|.
T Consensus 2 ~P~i~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKITY-LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Ccccee-cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 677754 567888999999999999999999999999986654321 01122222211112233777899999999999
Q ss_pred EEeCCCceeEEEEEEEE
Q psy18191 209 ARNELGFARSKNATLDV 225 (238)
Q Consensus 209 a~N~~G~~~s~~~~L~V 225 (238)
|.|.+|... .++.|.|
T Consensus 81 a~N~~G~~~-~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQ-QSMYLEV 96 (96)
T ss_pred EEeCCCCcE-EEEEEeC
Confidence 999999996 5888865
No 31
>KOG4194|consensus
Probab=99.66 E-value=8e-16 Score=132.06 Aligned_cols=193 Identities=19% Similarity=0.281 Sum_probs=130.3
Q ss_pred hhhhcccceeEEeecCCCCCCCCCCCCcceeeeeccccccC-----------CCcccccCCCccEEEecccc-ccccceE
Q psy18191 13 SFVENSSQRCIKINLPKASHSPSSRPDQNYLRVSGFADLTQ-----------PPARGGFYPKPICLRFQDLL-PQSKQGL 80 (238)
Q Consensus 13 ~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~v~~~~~~~~-----------pp~~~~~~~~~~~~w~~~~~-~~~~~g~ 80 (238)
.|++.|.|.||..|--....+..++....-. -.|...+. --......|.|.+.|.|++- +..+...
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~--PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~e 659 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQA--PSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARE 659 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeecc--CccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhh
Confidence 4788999999999999888887666443221 00111110 01111235689999999987 4666432
Q ss_pred ---------EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEE
Q psy18191 81 ---------MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTL 151 (238)
Q Consensus 81 ---------~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L 151 (238)
--++|.++.++|.|.|+|.+.+. +|. ......+.|...|.+..+.....+..|+++.|
T Consensus 660 RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~--AG~-----------isanAtL~V~e~p~f~~PL~~~~V~~get~vl 726 (873)
T KOG4194|consen 660 RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNV--AGQ-----------ISANATLTVLETPSFSIPLEDQLVVVGETLVL 726 (873)
T ss_pred heeeecCCCCEEEEecccccccceeEEeeecc--ccc-----------eeeceEEEEecCCcccccccceEEEecceEEE
Confidence 23456688888888888777663 231 11111222556788888888899999999999
Q ss_pred EEEEeeeCC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191 152 NCKADGYPE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226 (238)
Q Consensus 152 ~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~ 226 (238)
.|.+.|.|. |.+.|+|+++++... .+....++.-.+ +++.+..+|+|.|+|...|..|.... -+.+.+.
T Consensus 727 qC~a~~~~a~pr~~W~k~d~pil~t---~rh~f~d~dQll--vv~~~~~~daG~yTcem~~~~~~~~~-~i~l~~~ 796 (873)
T KOG4194|consen 727 QCLAEGAPADPRLEWFKEDKPILIT---ERHTFPDGDQLL--VVKENLVEDAGIYTCEMSNTLGTERI-HICLLVY 796 (873)
T ss_pred EEecCCCCCCccccccCCCCceEEe---ecccCCCCCeEE--EEEehhhhhcceEEEEEEeeccceee-EEEEEEe
Confidence 999999998 999999999988753 233333333222 24556899999999999999999864 5555443
No 32
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.66 E-value=3.1e-15 Score=105.20 Aligned_cols=101 Identities=18% Similarity=0.259 Sum_probs=70.3
Q ss_pred ccCCEEEeCCCceE-E---eCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE-ecCCc-EEEEEeecCCC-CCC
Q psy18191 129 YRVPRITEHPASAV-V---PRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL-LPAGS-LFFLSLVHGKK-DTD 201 (238)
Q Consensus 129 ~~~P~i~~~~~~~~-~---~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~-l~~~~vi~~v~-~~d 201 (238)
.++|.|...+.... + ..|+++.|.|.+.|.|.|.++|+++|..+.......... ...+. ....+.|..+. .+|
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 46777766654222 2 246789999999999999999999999886431111111 11111 11122356666 589
Q ss_pred CeEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191 202 SGVYWCVARNELGFARSKNATLDVAGKIS 230 (238)
Q Consensus 202 ~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~ 230 (238)
.|.|+|.|.|.+|.+. ..+.|.|..+|+
T Consensus 82 ~G~Y~C~A~N~~G~~~-~~i~L~~~~~p~ 109 (109)
T cd05773 82 YALFTCTAHNSLGEDS-LDIQLVSTSRPD 109 (109)
T ss_pred CEEEEEEEEeCCccCc-EEEEEEecCCCC
Confidence 9999999999999996 599999988774
No 33
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.66 E-value=1.9e-15 Score=101.68 Aligned_cols=84 Identities=32% Similarity=0.598 Sum_probs=67.0
Q ss_pred CCCceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191 137 HPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF 215 (238)
Q Consensus 137 ~~~~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~ 215 (238)
.|.+..+.+|+++.|.|.+ .|.|.|.+.|++++..+... ........++.|.+..+ +.+|+|.|+|.|.|..|.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~~~L~I~~~----~~~D~G~Y~C~a~N~~G~ 76 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVDDGNLLIAEA----RKSDEGTYKCVATNMVGE 76 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEccCCEEEEeEC----CcccCEEEEEEEEeccCc
Confidence 3567888999999999998 79999999999999988753 22333344567765554 999999999999999999
Q ss_pred eeEEEEEEEE
Q psy18191 216 ARSKNATLDV 225 (238)
Q Consensus 216 ~~s~~~~L~V 225 (238)
..+..+.|.|
T Consensus 77 ~~s~~~~l~V 86 (86)
T cd05724 77 RESAAARLSV 86 (86)
T ss_pred eeeeeEEEEC
Confidence 8766777654
No 34
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.66 E-value=2.6e-15 Score=103.71 Aligned_cols=90 Identities=32% Similarity=0.497 Sum_probs=66.5
Q ss_pred cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeC--CEEeecc--CCccEEEec----CCcEEEEEeecCCCCCC
Q psy18191 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD--GSLVSAE--IGSHRILLP----AGSLFFLSLVHGKKDTD 201 (238)
Q Consensus 130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~--g~~l~~~--~~~~~~~~~----~~~l~~~~vi~~v~~~d 201 (238)
++|.|.. +.+..+.+|+++.|.|.+.|.|.|.+.|+++ +..+... ....++... ...|. |..++.+|
T Consensus 1 ~~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~----I~~v~~~D 75 (98)
T cd05870 1 VQPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLH----IKDVKLSD 75 (98)
T ss_pred CCCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEE----EeeCCcCC
Confidence 3678765 5689999999999999999999999999994 4444311 011233222 12343 56669999
Q ss_pred CeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 202 SGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 202 ~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
+|.|+|.|.|.+|... .++.|.|
T Consensus 76 ~G~Y~C~A~N~~G~~~-~~~~l~~ 98 (98)
T cd05870 76 SGRYDCEAASRIGGHQ-KSMYLDI 98 (98)
T ss_pred CEEEEEEEeccCCcce-eEEEEeC
Confidence 9999999999999986 5888865
No 35
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.65 E-value=1.4e-15 Score=99.97 Aligned_cols=75 Identities=31% Similarity=0.550 Sum_probs=60.5
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
|+++.|.|.+.|.|.|.+.|+++|..+............++.|. |..++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLI----LSNVQPNDTAVYQCNASNVHGYLL-ANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEE----ECCCChhhCEEEEEEEEccCCeEE-EeEEEEE
Confidence 78899999999999999999999998865422223334456655 556699999999999999999997 4888887
No 36
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.65 E-value=1.3e-15 Score=99.66 Aligned_cols=74 Identities=35% Similarity=0.566 Sum_probs=58.6
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~ 226 (238)
+.|.|.+.|.|.|.+.|++++..+............++.|. |..++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~----i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQ----IENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEE----ECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 47999999999999999999988764323333444455554 566699999999999999999976678888873
No 37
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.65 E-value=4e-15 Score=102.07 Aligned_cols=89 Identities=17% Similarity=0.341 Sum_probs=63.3
Q ss_pred EeCCCceEEeCCCcEEEEEEEeeeCC-CEEEEEe-CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191 135 TEHPASAVVPRHEPTTLNCKADGYPE-PRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212 (238)
Q Consensus 135 ~~~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~ 212 (238)
...|....+..|+++.|.|.+.|.|. |.++|++ ++..+... ..+......+.....+.|..++.+|+|.|+|.|.|.
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~-~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPN-QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcccc-CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 34566778999999999999999995 7999998 78766542 112222222111111225666999999999999999
Q ss_pred C-CceeEEEEEEEE
Q psy18191 213 L-GFARSKNATLDV 225 (238)
Q Consensus 213 ~-G~~~s~~~~L~V 225 (238)
+ |... .++.|.|
T Consensus 83 ~~g~~~-~s~~l~v 95 (96)
T cd05865 83 DEGESE-ATVNVKI 95 (96)
T ss_pred CCCcEE-EEEEEEE
Confidence 7 7775 5888876
No 38
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.65 E-value=2.4e-15 Score=98.55 Aligned_cols=75 Identities=28% Similarity=0.455 Sum_probs=55.5
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
+.|.|.+.|.|.|.+.|+|++..+... ..+......+.-...+.|..+..+|+|.|+|.|.|.+|+..+ .+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSC-NARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEE-EEEEeC
Confidence 479999999999999999999988743 222222222211111237777999999999999999999975 888865
No 39
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=1.8e-15 Score=98.67 Aligned_cols=73 Identities=33% Similarity=0.572 Sum_probs=59.8
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
|+++.|.|.+.|.|.|.++|++++..+.. ........++.|. |..+..+|+|.|+|.|.|.+|...+ ++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~--~~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTN--SSRICIWPDGSLE----ILNVTKSDEGKYTCFAENFFGKANS-TGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEccc--CCCEEECCCCeEE----EccCChhHCEEEEEEEECCCCceEE-EEEEEC
Confidence 68899999999999999999999998764 2333344556666 5555999999999999999999974 888875
No 40
>KOG4221|consensus
Probab=99.64 E-value=7.3e-15 Score=134.13 Aligned_cols=159 Identities=21% Similarity=0.309 Sum_probs=111.1
Q ss_pred CCCccEEEeccccccccce-E-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecce-ecCCccCCE
Q psy18191 61 YPKPICLRFQDLLPQSKQG-L-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGV-HGDGYRVPR 133 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g-~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~-~~~v~~~P~ 133 (238)
.+.|++.|.++..++...+ + --|.|.++.+.|.|.|.|...+.-.++. .+...+.+. ...+...-.
T Consensus 167 e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~-------S~~a~ltv~s~~~~~~~~~ 239 (1381)
T KOG4221|consen 167 EPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRT-------SNEAELTVLSDPGALNKLV 239 (1381)
T ss_pred ccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCc-------cceeEEEecCCccccccee
Confidence 4467899999888655433 1 1356678899999999987766433221 111111110 111222334
Q ss_pred EEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212 (238)
Q Consensus 134 i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~ 212 (238)
|...|.+..+.+|+++.|.|.+.|.|.|.|.|++||..|..+ +.++. ...+.|.+..+ +..|+|.|+|+|.|.
T Consensus 240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~d--s~rivl~g~~slliS~a----~~~dSg~YtC~Atn~ 313 (1381)
T KOG4221|consen 240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVD--SYRIVLVGGSSLLISNA----TDDDSGKYTCRATNT 313 (1381)
T ss_pred eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeec--ceEEEEecccceEEecc----ccccCceEEEEecCC
Confidence 667788899999999999999999999999999999999875 24444 44666765554 999999999999996
Q ss_pred CCceeEEEEEEEEccCCCCCC
Q psy18191 213 LGFARSKNATLDVAGKISTAT 233 (238)
Q Consensus 213 ~G~~~s~~~~L~V~~~~~~~~ 233 (238)
..... ..+.|.|..+|..+.
T Consensus 314 ~D~id-asaev~V~a~P~~~~ 333 (1381)
T KOG4221|consen 314 NDSID-ASAEVTVLAPPGFTK 333 (1381)
T ss_pred Ccccc-cceEEEEEcCCCCCC
Confidence 66654 377888888776554
No 41
>KOG4194|consensus
Probab=99.64 E-value=1.2e-15 Score=130.92 Aligned_cols=131 Identities=25% Similarity=0.359 Sum_probs=95.0
Q ss_pred EEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceec-ceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC
Q psy18191 83 LVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFP-GVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP 161 (238)
Q Consensus 83 l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~-~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p 161 (238)
+...++.-.|.|+|.|...|. .+...+ .+...+...|.|+..|.++++..|+.+.|.|.|.|.|.|
T Consensus 576 L~L~nVt~td~grYQCVvtN~-------------FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~P 642 (873)
T KOG4194|consen 576 LHLDNVTFTDEGRYQCVVTNH-------------FGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRP 642 (873)
T ss_pred eeeeeeecccCceEEEEEecc-------------cCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCc
Confidence 334455555666666554443 222222 344447788999999999999999999999999999999
Q ss_pred EEEEEeCCEE-eeccCCccEEEec-CCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191 162 RIEWYKDGSL-VSAEIGSHRILLP-AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231 (238)
Q Consensus 162 ~i~W~~~g~~-l~~~~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~ 231 (238)
+|.|.|+|.. .+.-...+.+.+. ++.+.+ .+|+.+|.|.|+|.|.|.+|+.. ..++|.|.+.|+.
T Consensus 643 eIawqkdggtdFPAA~eRRl~Vmpedd~f~I----tnvk~eD~GiYtC~A~n~AG~is-anAtL~V~e~p~f 709 (873)
T KOG4194|consen 643 EIAWQKDGGTDFPAARERRLHVMPEDDVFFI----TNVKIEDQGIYTCTAQNVAGQIS-ANATLTVLETPSF 709 (873)
T ss_pred ceeehhcCCCCCchhhhheeeecCCCCEEEE----ecccccccceeEEeeecccccee-eceEEEEecCCcc
Confidence 9999998754 3332223333344 444554 45599999999999999999996 6999999887653
No 42
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.63 E-value=3.1e-15 Score=100.46 Aligned_cols=78 Identities=26% Similarity=0.368 Sum_probs=60.0
Q ss_pred CcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEE---Ee--cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191 147 EPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRI---LL--PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219 (238)
Q Consensus 147 ~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~---~~--~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~ 219 (238)
+.+.|.|.+.|.|.| .+.|+++|..+.......++ .. ..+.|. |..++..|+|.|+|.|.|.+|... .
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~----I~~v~~~D~G~YtC~A~n~~g~~~-~ 75 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLV----IVNAQLSHAGTYTCTAQTVVDSAS-A 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEE----EccCChhhCeEEEEEEecCCCCEE-E
Confidence 468999999999988 58999999988653222221 11 224454 566699999999999999999997 5
Q ss_pred EEEEEEccCC
Q psy18191 220 NATLDVAGKI 229 (238)
Q Consensus 220 ~~~L~V~~~~ 229 (238)
++.|.|.++|
T Consensus 76 ~~~L~V~~~P 85 (85)
T cd05854 76 SATLVVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 9999998865
No 43
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.63 E-value=2.3e-15 Score=99.86 Aligned_cols=78 Identities=28% Similarity=0.471 Sum_probs=60.4
Q ss_pred EeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191 135 TEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL 213 (238)
Q Consensus 135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~ 213 (238)
...|.++.+.+|+++.|.|.+.|.|.| .|.|+++|.++... .....+.|.+. ...|+|.|+|.|.|.+
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-----~~~~~s~L~i~------~~~d~g~Y~C~A~N~~ 70 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-----PAPSPSVLNVP------GLNETSKFSCEAHNAK 70 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-----CCCCCCEEEEc------cccCCeEEEEEEEecc
Confidence 345778899999999999999999999 79999999987531 11223444433 3358899999999999
Q ss_pred CceeEEEEEE
Q psy18191 214 GFARSKNATL 223 (238)
Q Consensus 214 G~~~s~~~~L 223 (238)
|...+..++|
T Consensus 71 G~~~s~~a~~ 80 (81)
T cd05749 71 GVTTSRTGTV 80 (81)
T ss_pred CcEEeeeEEe
Confidence 9987666665
No 44
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.63 E-value=4.9e-15 Score=99.51 Aligned_cols=80 Identities=30% Similarity=0.498 Sum_probs=61.5
Q ss_pred eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEe--cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191 141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS 218 (238)
Q Consensus 141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s 218 (238)
..+.+|+.+.|.|.+.|.|.|.+.|+++|..+........... ....|. |..+..+|+|.|+|.|.|.+|+..
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~----i~~~~~~D~G~Y~C~a~N~~G~~~- 78 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKGNYTCVVENEYGSIN- 78 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEE----EccCCcccCEEEEEEEEeCCCEEE-
Confidence 4578899999999999999999999999998865311111111 122333 566699999999999999999997
Q ss_pred EEEEEEE
Q psy18191 219 KNATLDV 225 (238)
Q Consensus 219 ~~~~L~V 225 (238)
.++.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05857 79 HTYHLDV 85 (85)
T ss_pred EEEEEEC
Confidence 5888875
No 45
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.63 E-value=5.6e-15 Score=102.32 Aligned_cols=80 Identities=25% Similarity=0.402 Sum_probs=63.8
Q ss_pred ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEec---------CCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP---------AGSLFFLSLVHGKKDTDSGVYWCVAR 210 (238)
Q Consensus 140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---------~~~l~~~~vi~~v~~~d~G~Y~C~a~ 210 (238)
...+..|+.+.|.|.+.|.|+|.+.|+|+|.+|..+ ....... ...|. |..+..+|+|.|+|.|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~--~~~~~~~~~~~~~~~~~s~L~----I~~v~~~D~G~Ytc~A~ 85 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIEN--LTEITTSEHNVQETRYVSKLK----LIRAKEEDSGLYTALAQ 85 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCC--cceEEeccccccceeeccEEE----EeeCCHHHCEEEEEEEE
Confidence 567788999999999999999999999999998753 2121111 12344 55669999999999999
Q ss_pred eCCCceeEEEEEEEEc
Q psy18191 211 NELGFARSKNATLDVA 226 (238)
Q Consensus 211 N~~G~~~s~~~~L~V~ 226 (238)
|..|... .++.|.|+
T Consensus 86 N~~g~~~-~t~~l~V~ 100 (101)
T cd05859 86 NEDAVKS-YTFALQIQ 100 (101)
T ss_pred cCCceEE-EEEEEEEE
Confidence 9999996 59999885
No 46
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.62 E-value=1.4e-14 Score=98.74 Aligned_cols=86 Identities=22% Similarity=0.402 Sum_probs=66.0
Q ss_pred CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191 137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA 216 (238)
Q Consensus 137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~ 216 (238)
.|..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .........+.. ..+.|..++.+|+|.|+|.|.|.+|..
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~-~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS-EHYSVKLEQGKY-ASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC-CCEEEEEcCCCE-EEEEECCCChhhCEEEEEEEEeCCCce
Confidence 356788999999999999999999999999999887643 222232333322 123377889999999999999999999
Q ss_pred eEEEEEEEE
Q psy18191 217 RSKNATLDV 225 (238)
Q Consensus 217 ~s~~~~L~V 225 (238)
. ..+.|.|
T Consensus 85 ~-~~~~v~~ 92 (92)
T cd05891 85 T-VDVTVSV 92 (92)
T ss_pred e-eEEEEEC
Confidence 6 4777764
No 47
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.61 E-value=4.1e-15 Score=96.42 Aligned_cols=71 Identities=30% Similarity=0.522 Sum_probs=55.8
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~ 226 (238)
+.|.|.+.|.|.|.+.|++++..+... .......++.|.+ ..++.+|+|.|+|.|.|..|... .++.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~--~~~~~~~~~~L~I----~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN--RTKKLNNNKTLQL----DNVLESDDGEYVCTAENSEGSAR-HHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC--ceeEEcCCCEEEE----cccCHHhCEEEEEEEEcCCCeEE-EEEEEEEC
Confidence 468999999999999999999876532 2223334566664 45599999999999999999996 58888873
No 48
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.61 E-value=3.9e-15 Score=94.92 Aligned_cols=65 Identities=31% Similarity=0.552 Sum_probs=52.1
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
+.|.|.+.|.|.|.++|+|||..+... ...+.|. |..+..+|+|.|+|.|.|..|... +++.|.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-------~~~~~L~----i~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-------HSQHSLQ----IKDVTEASAGTYTLVLWNSAAGLE-KRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-------CCcCEEE----ECCCCHHHCEEEEEEEEECCccEE-EEEEEEE
Confidence 479999999999999999999988632 1234454 566699999999999999999875 4666665
No 49
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.61 E-value=6.5e-15 Score=97.04 Aligned_cols=74 Identities=34% Similarity=0.663 Sum_probs=54.3
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE-EEEEEEEc
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS-KNATLDVA 226 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s-~~~~L~V~ 226 (238)
+.|.|.+.|.|.|.+.|+|+|.++.............+.|. |..+..+|+|.|+|.|.|.+|...+ ..++|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLT----LRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEE----EeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 47999999999999999999998865321122222334555 4555999999999999999998742 35666653
No 50
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.61 E-value=1.4e-14 Score=94.64 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=55.4
Q ss_pred cEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 148 PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 148 ~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
.+.|.|.+.|.|.|.+.|+++|..+... ........+... .+.|..+..+|+|.|+|.|.|.+|... .++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~-~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLS--GRVQIETTASST-SLVIKNAERSDSGKYTLTLKNPAGEKS-ATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCC--CeEEEEECCCeE-EEEECCCCcCcCEEEEEEEECCCccEE-EEEEEEC
Confidence 3789999999999999999999988532 222222222111 123678899999999999999999996 5888865
No 51
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.61 E-value=7.2e-15 Score=98.06 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=61.3
Q ss_pred CcEEEEEEEee--eCCCEEEEEeCCEEeeccCCccEEEe-----cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191 147 EPTTLNCKADG--YPEPRIEWYKDGSLVSAEIGSHRILL-----PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219 (238)
Q Consensus 147 ~~~~L~C~~~g--~P~p~i~W~~~g~~l~~~~~~~~~~~-----~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~ 219 (238)
+++.|.|.+.+ .+.+.+.|++||..|.......++.. ..+.|.|. +++.+|+|.|+|.|.|.+++.. .
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~----nv~~~dsG~YtC~a~n~~~~~~-a 75 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIR----SIQLKHAGKYVCMVQTSVDKLS-A 75 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEe----cCCHHHCEEEEEEEEcccCceE-E
Confidence 46899999976 55789999999999974323333332 34667654 5599999999999999999996 6
Q ss_pred EEEEEEccCC
Q psy18191 220 NATLDVAGKI 229 (238)
Q Consensus 220 ~~~L~V~~~~ 229 (238)
++.|.|.++|
T Consensus 76 ~a~L~V~~pP 85 (85)
T cd05853 76 AADLIVRGPP 85 (85)
T ss_pred EEEEEEecCC
Confidence 9999999876
No 52
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.61 E-value=2.1e-14 Score=97.64 Aligned_cols=83 Identities=23% Similarity=0.479 Sum_probs=63.8
Q ss_pred eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEe-CCEEeeccCCccEEEecCC---cEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191 136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAG---SLFFLSLVHGKKDTDSGVYWCVARN 211 (238)
Q Consensus 136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~---~l~~~~vi~~v~~~d~G~Y~C~a~N 211 (238)
..+.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+.. ..+.....++ .|. |..+..+|+|.|+|.|.|
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~--~~r~~~~~~g~~~~L~----I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVS--SQRVVVQKEGVRSRLT----IYNANIEDAGIYRCQATD 77 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecC--CCCEEEEeCCCeeEEE----EecCChHHCEEEEEEEEc
Confidence 4467788999999999999999998 899998 4666643 2333333344 344 566699999999999999
Q ss_pred CCCceeEEEEEEEE
Q psy18191 212 ELGFARSKNATLDV 225 (238)
Q Consensus 212 ~~G~~~s~~~~L~V 225 (238)
..|....+++.|.|
T Consensus 78 ~~G~~~~~~i~l~~ 91 (92)
T cd05866 78 AKGQTQEATVVLEI 91 (92)
T ss_pred CCCcEEEEEEEEEE
Confidence 99998656877765
No 53
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.59 E-value=1.4e-14 Score=93.20 Aligned_cols=68 Identities=28% Similarity=0.474 Sum_probs=51.5
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L 223 (238)
|+.+.|.|.+.|.|.|.|+|+|++..+... .+.......|.+ .. ..|+|.|+|.|.|..|... .++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~---~~~~~~~~~L~i----~~--~~d~G~Y~C~A~N~~G~~~-~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE---DEMPVGRNVLEL----TN--IYESANYTCVAISSLGMIE-ATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCc---cceecCccEEEE----ec--cccCeeEEEEEEeCCCEEE-EEEEE
Confidence 678999999999999999999999887532 222222333433 33 3589999999999999986 47766
No 54
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.59 E-value=9.8e-15 Score=94.60 Aligned_cols=69 Identities=32% Similarity=0.555 Sum_probs=55.1
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
+.|.|.+.|.|.|.+.|+|+|..+... .+....++.|. |..+..+|+|.|+|.|.|..|... ..+.+.|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~---~~~~~~~~~L~----I~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK---NRTKKSGHSLT----IKDVTEEDAGNYTVVLTNKQAKLE-KRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC---CEEEcCCCEEE----ECcCCHHHCEEEEEEEEcCCccEE-EEEEEEE
Confidence 468999999999999999999988743 33444555555 555699999999999999999875 4776665
No 55
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=1.1e-14 Score=97.81 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=60.2
Q ss_pred CcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCcc---EE--EecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191 147 EPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSH---RI--LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219 (238)
Q Consensus 147 ~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~---~~--~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~ 219 (238)
+++.|.|.+.|.|.| .+.|+++|..+....... +. ....+.|. |..++..|+|.|+|.|.|.+|... .
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~n~~g~~~-~ 75 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLM----IRNAQLKHAGKYTCTAQTVVDSLS-A 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEE----EccCCHHhCeeeEEEEecCCCcEE-E
Confidence 468999999999988 679999999886532211 11 12345565 555599999999999999999996 5
Q ss_pred EEEEEEccCC
Q psy18191 220 NATLDVAGKI 229 (238)
Q Consensus 220 ~~~L~V~~~~ 229 (238)
.+.|.|.++|
T Consensus 76 ~~~l~V~~pP 85 (85)
T cd04970 76 SADLIVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 9999998865
No 56
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.59 E-value=6.1e-15 Score=95.05 Aligned_cols=68 Identities=38% Similarity=0.686 Sum_probs=54.0
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L 223 (238)
+.|.|.+.|.|.|.+.|+|+|..+... .......++.|. |..+..+|+|.|+|.|.|.+|... .++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~--~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTES--GKFHISPEGYLA----IRDVGVADQGRYECVARNTIGYAS-VSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCC--CCEEECCCCEEE----ECcCChhhCEEEEEEEECCCCcEE-EEEEe
Confidence 479999999999999999999887642 233333456665 556699999999999999999996 47766
No 57
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.59 E-value=2.3e-14 Score=97.57 Aligned_cols=83 Identities=31% Similarity=0.630 Sum_probs=62.3
Q ss_pred CEEEeCCCceEEeCC---CcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCC-CCCCeEEEE
Q psy18191 132 PRITEHPASAVVPRH---EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK-DTDSGVYWC 207 (238)
Q Consensus 132 P~i~~~~~~~~~~~G---~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~-~~d~G~Y~C 207 (238)
|.|...|.+..+..+ +.+.|.|.+.|+|.|.++|++++..+... ...+....++.|.+.. +. .+|+|.|+|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~-~~~~~~~~~~~L~i~~----~~~~~d~G~Y~C 76 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDE-PDSRYSLVGGNLVISN----PSKAKDAGRYQC 76 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCC-CCCCEEEECCEEEEec----CCccCCCEEEEE
Confidence 667777777665443 57999999999999999999999988532 2233444566665433 35 589999999
Q ss_pred EEEeCCCceeEE
Q psy18191 208 VARNELGFARSK 219 (238)
Q Consensus 208 ~a~N~~G~~~s~ 219 (238)
.|+|.+|...|.
T Consensus 77 ~a~N~~G~~~S~ 88 (91)
T cd04967 77 LASNIVGTVLSR 88 (91)
T ss_pred EEEcCCCEEEec
Confidence 999999998653
No 58
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.58 E-value=2.1e-14 Score=93.87 Aligned_cols=73 Identities=37% Similarity=0.652 Sum_probs=57.8
Q ss_pred CCcEEEEEEEeeeCCCEEEEEe-CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD 224 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~ 224 (238)
|+.+.|.|.+.|.|.|.+.|++ ++..+.. ........++.|.+..+ ..+|+|.|+|.|.|..|... ..+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~--~~~~~~~~~~~L~i~~~----~~~D~G~Y~C~a~N~~G~~~-~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISN--SSRTLVYDNGTLDILIT----TVKDTGSFTCIASNAAGEAT-ATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecC--CCeEEEecCCEEEEEEC----ChhhCEEEEEEEECCCCeEE-EEEEEE
Confidence 6889999999999999999997 5665543 23333445677775554 99999999999999999986 588886
Q ss_pred E
Q psy18191 225 V 225 (238)
Q Consensus 225 V 225 (238)
|
T Consensus 74 v 74 (74)
T cd05764 74 I 74 (74)
T ss_pred C
Confidence 5
No 59
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.58 E-value=5.2e-14 Score=95.97 Aligned_cols=88 Identities=18% Similarity=0.368 Sum_probs=62.5
Q ss_pred EeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEe-CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191 135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL 213 (238)
Q Consensus 135 ~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~ 213 (238)
...|.+..+..|+++.|.|.+.|.| +.+.|++ ++..+... ........+.....+.|..++.+|+|.|+|.|.|.+
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 80 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQ--QQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK 80 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccC--CCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence 3456778899999999999999997 5999997 66655532 222222233222223367779999999999999998
Q ss_pred CceeEEEEEEEE
Q psy18191 214 GFARSKNATLDV 225 (238)
Q Consensus 214 G~~~s~~~~L~V 225 (238)
|.....++.|.|
T Consensus 81 g~~~~~sv~l~~ 92 (92)
T cd04977 81 GTESEATVNLKI 92 (92)
T ss_pred CCcceeEEEEEC
Confidence 765445777754
No 60
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.58 E-value=9.1e-15 Score=94.24 Aligned_cols=69 Identities=28% Similarity=0.496 Sum_probs=54.7
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
+.|.|.+.|.|.|.+.|++++..+.. .......++.|. |..+..+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK---GRAEILDDKSLK----IRNVTAGDEGSYTCEAENMVGKIE-ASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC---CcEEEeeCCEEE----ECcCChhHCEEEEEEEEcCCCcEE-EEEEEEC
Confidence 47999999999999999999876642 233334556665 555599999999999999999996 4888865
No 61
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.58 E-value=2.4e-14 Score=97.25 Aligned_cols=81 Identities=30% Similarity=0.454 Sum_probs=61.7
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeec------cCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSA------EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~------~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~ 219 (238)
|+.+.|.|.+.|.|.|.+.|+++|..+.. ....+.....++.|.|. .++.+|+|.|+|.|.|.+|... .
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~----~v~~~D~G~Y~C~a~N~~G~~~-~ 75 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTIT----NVQRSDVGYYICQTLNVAGSIL-T 75 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEe----eCChhhCEEEEEEEEcCCCceE-E
Confidence 68899999999999999999998865321 01122223345666644 4499999999999999999997 5
Q ss_pred EEEEEEccCCCC
Q psy18191 220 NATLDVAGKIST 231 (238)
Q Consensus 220 ~~~L~V~~~~~~ 231 (238)
.+.|.|.+...-
T Consensus 76 ~~~l~V~~~~~~ 87 (90)
T cd05726 76 KAYLEVTDVIAD 87 (90)
T ss_pred EEEEEEeecccC
Confidence 999999876543
No 62
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.57 E-value=9.9e-14 Score=95.75 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=65.6
Q ss_pred CCEEEeCCCceEEeCCCcEEEEEEEeeeCCC-EEEEEeCCEEeeccCCccEEEecC---CcEEEEEeecCCCCCC-CeEE
Q psy18191 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPA---GSLFFLSLVHGKKDTD-SGVY 205 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~---~~l~~~~vi~~v~~~d-~G~Y 205 (238)
||.|.. +....+.+|+.+.|.|.+.|.|.| .+.|++++..+......+...... +.....+.|..+..+| .|.|
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 677754 556778999999999999999999 699999998886532222222111 1222223467778855 8999
Q ss_pred EEEEEeCCCceeEEEEEE
Q psy18191 206 WCVARNELGFARSKNATL 223 (238)
Q Consensus 206 ~C~a~N~~G~~~s~~~~L 223 (238)
.|.|.|.+|.+. ..+.|
T Consensus 81 ~C~A~N~~G~~~-~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGT-AIISL 97 (98)
T ss_pred EEEEEcCCCccc-EEEEe
Confidence 999999999986 47665
No 63
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.57 E-value=2e-14 Score=95.19 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=61.9
Q ss_pred CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR 217 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~ 217 (238)
|.+..+.+|+.+.|.|.+.|. .|.+.|+|+|.++... .+....++.|. |..+..+|+|.|+|.|.|..|...
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~---~~~~~~~~~L~----I~~~~~~DsG~Y~C~a~n~~g~~~ 72 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN---NRTRITGEEVQ----IKDAVPRDSGLYACVTSSPSGSDT 72 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC---ceEEEeCCEEE----ECCCChhhCEEEEEEEeCCCCccc
Confidence 456788999999999999986 5789999999888642 23334455554 566699999999999999999985
Q ss_pred EEEEEEEE
Q psy18191 218 SKNATLDV 225 (238)
Q Consensus 218 s~~~~L~V 225 (238)
..+.|.|
T Consensus 73 -~~~~v~V 79 (79)
T cd04973 73 -TYFSVNV 79 (79)
T ss_pred -EEEEEeC
Confidence 4666654
No 64
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.57 E-value=1.7e-14 Score=92.95 Aligned_cols=68 Identities=26% Similarity=0.514 Sum_probs=51.9
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
+.|.|.+.|.|.|.++|+|+|.++... ..+ ..+..|. |..+..+|+|.|+|.|.|.+|... ...++.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~---~~~-~~~~~L~----I~~v~~~D~G~YtC~a~N~~G~~~-~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN---HTF-KRGVHLT----IYEVTEKDAGNYTVVLTNPITKEE-QRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC---CEE-ccCCEEE----ECcCCHHHCEEEEEEEEECCCcee-eEEEEEE
Confidence 368999999999999999999998642 222 2233454 566699999999999999999775 3555443
No 65
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.56 E-value=2.5e-14 Score=93.77 Aligned_cols=72 Identities=38% Similarity=0.601 Sum_probs=53.5
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE--ecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL--LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~--~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
+.|.|.+.|.|.|.++|+|++..........++. ..++.|. |..+..+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~A~N~~G~~~-~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFF----IVDVKIEDTGVYSCTAQNTAGSIS-ANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEE----EeeCCcccCEEEEEEEEcCCCEEE-eeEEEEE
Confidence 4799999999999999999986432211222222 2334454 455599999999999999999996 5999987
No 66
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.56 E-value=2.8e-14 Score=96.90 Aligned_cols=79 Identities=24% Similarity=0.331 Sum_probs=54.7
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCC----EEeeccCCccEEEec-------CCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDG----SLVSAEIGSHRILLP-------AGSLFFLSLVHGKKDTDSGVYWCVARNELG 214 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g----~~l~~~~~~~~~~~~-------~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G 214 (238)
|+.+.|.|.+.|.|.|.|+|+|++ ..+............ .+.+.++ .|..++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVL-YLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceE-EEeccccccCcEEEEEeecccC
Confidence 678999999999999999999963 333221111111000 1112122 2566799999999999999999
Q ss_pred ceeEEEEEEEEc
Q psy18191 215 FARSKNATLDVA 226 (238)
Q Consensus 215 ~~~s~~~~L~V~ 226 (238)
... .++.|.|.
T Consensus 80 ~~~-~sa~L~V~ 90 (90)
T cd04974 80 PSH-HSAWLTVL 90 (90)
T ss_pred ccc-CCEEEEeC
Confidence 996 59999884
No 67
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.56 E-value=1.4e-13 Score=114.99 Aligned_cols=149 Identities=11% Similarity=0.126 Sum_probs=92.8
Q ss_pred CCCccEEEeccccccccce-----EEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEE
Q psy18191 61 YPKPICLRFQDLLPQSKQG-----LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRIT 135 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~ 135 (238)
.+.+.+.|+++.. ..... ...|.+.++..+|.|.|+|.+.+....-.|.- .....+. + .....||.+
T Consensus 153 ~~~~~i~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~----t~~v~l~-V-~~~~~pp~~- 224 (326)
T PHA02785 153 NVNADIIWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNV----TRIVKLE-V-RDRIIPPTM- 224 (326)
T ss_pred CCCceEEEccCCc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeE----EEEEEEE-E-eccCCCcee-
Confidence 4578899998653 11111 13577889999999999987766422111100 0000011 1 112245655
Q ss_pred eCCCceEEeCCCcEEEEEEEeeeCCC---EEEEEeCCEEeeccC--CccEEEecC------Cc--EEEEEeecCCCCCCC
Q psy18191 136 EHPASAVVPRHEPTTLNCKADGYPEP---RIEWYKDGSLVSAEI--GSHRILLPA------GS--LFFLSLVHGKKDTDS 202 (238)
Q Consensus 136 ~~~~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~g~~l~~~~--~~~~~~~~~------~~--l~~~~vi~~v~~~d~ 202 (238)
..|....+..|+.+.|.|.+.|.|.| .+.|++||..+.... ...++...+ +. ....+.|..++.+|+
T Consensus 225 ~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~ 304 (326)
T PHA02785 225 QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDA 304 (326)
T ss_pred cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcC
Confidence 44577888889999999999998874 899999999885421 111222111 11 122234778899999
Q ss_pred eEEEEEEEeCCCcee
Q psy18191 203 GVYWCVARNELGFAR 217 (238)
Q Consensus 203 G~Y~C~a~N~~G~~~ 217 (238)
|.|+|.|.|..|...
T Consensus 305 G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 305 TTFTCMAFTIPSISK 319 (326)
T ss_pred eeeEEEEEeccCceE
Confidence 999999999997664
No 68
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.55 E-value=2.9e-14 Score=93.92 Aligned_cols=74 Identities=30% Similarity=0.577 Sum_probs=52.6
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEE-EecCCcEEEEEeecC-CCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFFLSLVHG-KKDTDSGVYWCVARNELGFARSKNATL 223 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~-~~~~~~l~~~~vi~~-v~~~d~G~Y~C~a~N~~G~~~s~~~~L 223 (238)
+.|.|.+.|.|.|.++|+|+|..+......... ...++.|.+..+ .. ...+|+|.|+|.|.|.+|...++.+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNM-NGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEecc-CCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 479999999999999999999988643222222 234577765433 10 023689999999999999987655554
No 69
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.55 E-value=7e-14 Score=92.32 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=55.0
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD 224 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~ 224 (238)
|+++.|.|.+.|.|.|.+.|++++..+... ....+....+... +.|..+..+|+|.|+|.|.|..|...+ .+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~-~~~~~~~~~~~~~--L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDS-ARVSITSEGGYGT--LTIRDVKESDQGAYTCEAINTRGMVFG-IPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCC-CCEEEEECCCEEE--EEECCCChHHCEEEEEEEEecCCEEEe-cccEE
Confidence 688999999999999999999998877542 1112222222222 236777999999999999999999864 54443
No 70
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.55 E-value=5.9e-14 Score=92.37 Aligned_cols=75 Identities=29% Similarity=0.530 Sum_probs=52.0
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEE-EecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~-~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L 223 (238)
+.|.|.+.|.|.|+++|+++|..+......... ...++.|.+..+-......|.|.|+|.|.|.+|...+..+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 469999999999999999999987433222222 234566665433111113478999999999999987655554
No 71
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.54 E-value=6.3e-14 Score=95.17 Aligned_cols=79 Identities=27% Similarity=0.404 Sum_probs=55.1
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeC----CEEeeccCCccEEEec-CCc-----EEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKD----GSLVSAEIGSHRILLP-AGS-----LFFLSLVHGKKDTDSGVYWCVARNELGF 215 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~----g~~l~~~~~~~~~~~~-~~~-----l~~~~vi~~v~~~d~G~Y~C~a~N~~G~ 215 (238)
|+++.|.|.+.|.|.|.++|+++ |..+............ .+. ....+.|+.++.+|+|.|+|.|.|.+|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 4444322111111111 110 0012236777999999999999999999
Q ss_pred eeEEEEEEEE
Q psy18191 216 ARSKNATLDV 225 (238)
Q Consensus 216 ~~s~~~~L~V 225 (238)
.. .++.|.|
T Consensus 81 ~~-~~a~L~V 89 (90)
T cd05858 81 SH-HSAWLTV 89 (90)
T ss_pred cc-ceEEEEE
Confidence 96 5999987
No 72
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.54 E-value=3.9e-14 Score=91.70 Aligned_cols=71 Identities=32% Similarity=0.576 Sum_probs=54.7
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~ 226 (238)
+.|.|.+.|.|.|.+.|++++..+... ........+.|. |..+..+|+|.|+|.|.|..|... ..+.|.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~--~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~ 71 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD--RTKFENFNKTLK----IDNVSEEDDGEYRCTASNSLGSAR-HTISVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC--ceeEecCCCEEE----ECCCCHHHCEEEEEEEEeCCceEE-EEEEEEEC
Confidence 469999999999999999998876532 112222234454 566699999999999999999996 58888873
No 73
>KOG4222|consensus
Probab=99.54 E-value=2.3e-14 Score=130.29 Aligned_cols=193 Identities=21% Similarity=0.210 Sum_probs=143.6
Q ss_pred hcccceeEEeecCCCCCCCCCCCCcceeeeeccc---------------cccCCCcccccCCCccEEEeccccccc--cc
Q psy18191 16 ENSSQRCIKINLPKASHSPSSRPDQNYLRVSGFA---------------DLTQPPARGGFYPKPICLRFQDLLPQS--KQ 78 (238)
Q Consensus 16 ~~~~~~~i~~~~~~~~~~~~~r~~~~~~~v~~~~---------------~~~~pp~~~~~~~~~~~~w~~~~~~~~--~~ 78 (238)
.-+.|.|.+.|-.....+.+.+.+...++- +|. ....||. ..+.+++.|-|++.++. ..
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrd-dfrv~prd~~~a~ge~avlEcgpP~---ghpeptvSw~Kdg~pl~~~~~ 178 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRD-DFRVSPRDVQAAVGEEAVLECGPPR---GHPEPTVSWVKDGKPLDHYDV 178 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEech-hcccCcccccccccceeEEeccCCC---CCCCCcceeecCCCccccccc
Confidence 568899999999998888888776555421 111 1233332 35689999999998654 22
Q ss_pred -eE-----EEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEE
Q psy18191 79 -GL-----MYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLN 152 (238)
Q Consensus 79 -g~-----~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~ 152 (238)
++ -.|+|.++...|.|.|.|.++|... . .......+.+..+|.+...+.++.+..|..+.+.
T Consensus 179 ~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG--~----------ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~ 246 (1281)
T KOG4222|consen 179 PIIALISGGNLLISNVRKSDEGTYACVATNMVG--E----------RESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFD 246 (1281)
T ss_pred eeEEEecCCcEEEeccccCCCceeeeeeccccc--c----------cccccceeeeccCCccccccccceeecccccccc
Confidence 22 2567788999999999987777422 1 0111223337789999999999999999999999
Q ss_pred EEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191 153 CKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231 (238)
Q Consensus 153 C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~ 231 (238)
|.+.|+|.|.++|.+++..+.. ....+.....++.+. .++..|.|.|.|.|.|.+|... ..+.|.|+++++.
T Consensus 247 c~v~GdP~P~Vrwkk~~~~~P~--~ry~i~~d~qtl~i~----r~tp~deg~y~C~a~n~vG~l~-asa~ltV~apP~f 318 (1281)
T KOG4222|consen 247 CRVGGDPQPTVRWKKDDPSLPR--SRYSILDDTQTLRID----RVTPTDEGTYVCPAENLVGGLE-ASATLTVQAPPSF 318 (1281)
T ss_pred cccCCCCCCceeeeccCCCCCc--cceeeeecccccccc----ccCCCcccceeeeccccccccc-cccceEEecCccc
Confidence 9999999999999998877764 234444555677644 4499999999999999999997 5999999988764
No 74
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.54 E-value=3.8e-14 Score=94.33 Aligned_cols=79 Identities=28% Similarity=0.404 Sum_probs=59.0
Q ss_pred eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEE
Q psy18191 141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKN 220 (238)
Q Consensus 141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~ 220 (238)
+....|+++.|.|.+.|.|.|.+.|++++..+.... ..........|. |..+..+|+|.|+|.|.|..|... ..
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~-~~~~~~~~~~L~----i~~v~~~D~G~Y~C~a~N~~G~~~-~~ 77 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE-IGESRKKKWTLS----LKNLKPEDSGKYTCHVSNRAGEIN-AT 77 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc-cceecCceEEEE----EccCChhhCEEEEEEEEcCCccEE-EE
Confidence 446779999999999999999999999998775421 111111112333 566699999999999999999986 47
Q ss_pred EEEEE
Q psy18191 221 ATLDV 225 (238)
Q Consensus 221 ~~L~V 225 (238)
+.|.|
T Consensus 78 ~~v~v 82 (82)
T cd05856 78 YKVDV 82 (82)
T ss_pred EEEeC
Confidence 77764
No 75
>KOG4222|consensus
Probab=99.54 E-value=5.2e-14 Score=128.00 Aligned_cols=158 Identities=23% Similarity=0.264 Sum_probs=111.2
Q ss_pred CCCccEEEeccccc-ccc----------ce-EEEEEc--CCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceec
Q psy18191 61 YPKPICLRFQDLLP-QSK----------QG-LMYLVG--SQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHG 126 (238)
Q Consensus 61 ~~~~~~~w~~~~~~-~~~----------~g-~~~l~~--~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~ 126 (238)
.|.|+++|||+|.. ... .| +..+.. +.....|.|.|+|.+.|.+. .|.+.... +.++.+
T Consensus 58 ~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g----~avSr~a~---L~vavl 130 (1281)
T KOG4222|consen 58 DPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLG----EAVSRGAS---LIVAVL 130 (1281)
T ss_pred CCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccc----eeeecCce---EEEEEe
Confidence 45789999999952 211 11 111221 12222378888877777544 33333332 221111
Q ss_pred CCccCCEEEeCCCceEEeCCCcEEEEEE-EeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191 127 DGYRVPRITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVY 205 (238)
Q Consensus 127 ~v~~~P~i~~~~~~~~~~~G~~~~L~C~-~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y 205 (238)
+-.|...|..+.+..|+.+.|.|. -.|.|.|.+.|.|+|+++.......+..+++|.|.|..+ ...|.|.|
T Consensus 131 ----rddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnv----rksD~GtY 202 (1281)
T KOG4222|consen 131 ----RDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNV----RKSDEGTY 202 (1281)
T ss_pred ----chhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEecc----ccCCCcee
Confidence 223445566778889999999998 579999999999999999855445666788999986655 99999999
Q ss_pred EEEEEeCCCceeEEEEEEEEccCCCCCC
Q psy18191 206 WCVARNELGFARSKNATLDVAGKISTAT 233 (238)
Q Consensus 206 ~C~a~N~~G~~~s~~~~L~V~~~~~~~~ 233 (238)
.|+|+|.+|..++..++|.|++++..-.
T Consensus 203 ~CVatNmvG~ReS~~A~lsv~e~P~f~~ 230 (1281)
T KOG4222|consen 203 ACVATNMVGERESIPARLSVQEKPWFWK 230 (1281)
T ss_pred eeeecccccccccccceeeeccCCcccc
Confidence 9999999999998999999999886543
No 76
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.53 E-value=1.3e-13 Score=90.67 Aligned_cols=73 Identities=21% Similarity=0.439 Sum_probs=52.1
Q ss_pred EEEEEeeeCCCEEEEEeCCEEeeccCCcc-EE-EecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191 151 LNCKADGYPEPRIEWYKDGSLVSAEIGSH-RI-LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD 224 (238)
Q Consensus 151 L~C~~~g~P~p~i~W~~~g~~l~~~~~~~-~~-~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~ 224 (238)
+.|.+.|+|.|.++|+|+|..|..+.... .+ ..........+.|..+..+|+|.|+|.|+|.+|+.. .++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~-~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDE-KNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccc-eEEEee
Confidence 67999999999999999999997531100 11 111111222334777799999999999999999986 476654
No 77
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.53 E-value=1.4e-13 Score=91.38 Aligned_cols=73 Identities=19% Similarity=0.329 Sum_probs=52.5
Q ss_pred EEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecC-----CcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEE
Q psy18191 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA-----GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD 224 (238)
Q Consensus 150 ~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~-----~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~ 224 (238)
.+.|.+.|.|.|.++|+|+|..+.... ........ ......++|..+..+|+|.|+|.|.|.+|...+ .+.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~-~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESD-YIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSK-SISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCC-ceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeee-EEEee
Confidence 368999999999999999999997542 11111111 111222347778999999999999999999964 66664
No 78
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.53 E-value=9.6e-14 Score=91.18 Aligned_cols=73 Identities=32% Similarity=0.685 Sum_probs=57.0
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCC-cEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG-SLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~-~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~ 226 (238)
+.|.|.+.|.|.|.+.|+|++..+............++ .|. |..+..+|+|.|+|.|.|..|... .++.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~----I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELH----ISNVRYEDTGAYTCIAKNEAGVDE-DISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEE----ECcCCcccCEEEEEEEEcCCCCcc-eEEEEEEE
Confidence 46899999999999999999998865422222223333 243 566699999999999999999997 59999886
No 79
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.53 E-value=1.6e-13 Score=90.27 Aligned_cols=74 Identities=28% Similarity=0.545 Sum_probs=52.1
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEE-ecCCcEEEEEeecCCC-CCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL-LPAGSLFFLSLVHGKK-DTDSGVYWCVARNELGFARSKNATL 223 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~~vi~~v~-~~d~G~Y~C~a~N~~G~~~s~~~~L 223 (238)
+.|.|.+.|.|.|.++|+|+|..+.......... ..++.|.+..+ .... .+|+|.|+|.|.|.+|...+..+.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFS-GGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEecc-CCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 4699999999999999999998764322222222 34566665432 1112 2469999999999999997666554
No 80
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.52 E-value=6.6e-14 Score=92.70 Aligned_cols=73 Identities=37% Similarity=0.661 Sum_probs=53.2
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeecc------CCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAE------IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT 222 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~ 222 (238)
+.|.|.+.|.|.|.+.|++++...... ...+.....++.|. |..+..+|+|.|.|.|.|..|...++.+.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~----I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLL----IKHVLEEDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEE----ECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence 479999999999999999964321110 11222234456666 45559999999999999999998777888
Q ss_pred EEE
Q psy18191 223 LDV 225 (238)
Q Consensus 223 L~V 225 (238)
|.|
T Consensus 77 l~~ 79 (79)
T cd05734 77 LTV 79 (79)
T ss_pred EeC
Confidence 765
No 81
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.52 E-value=7.1e-14 Score=90.35 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=51.5
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc-eeEEEEEEE
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF-ARSKNATLD 224 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~-~~s~~~~L~ 224 (238)
+.|.|.+.|.|.|++.|+|+|.++... ..+....++.|. |..+..+|+|.|+|.|.|.... .....++|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--~~~~~~~~~~L~----I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~ 71 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEK--CSRYHVDGYSLV----IKDVTEEDAGIYTILLGIKQYNLFKNLTITLI 71 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCC--CcEEEeCCCEEE----ECcCCHHHCEEEEEEEEccccceEeeEEEEEE
Confidence 368999999999999999999988642 233444445555 5666999999999999998644 333344443
No 82
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.50 E-value=1.2e-13 Score=94.39 Aligned_cols=82 Identities=24% Similarity=0.369 Sum_probs=62.5
Q ss_pred CceEEeCCCcEEEEEEEee-----eCCCEEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191 139 ASAVVPRHEPTTLNCKADG-----YPEPRIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~g-----~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~ 212 (238)
.+..+.+|+.+.|.|.+.| .|.|.+.|+|++..+.... ...++...++.|. |..+..+|+|.|+|.+.|.
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~----I~~~~~~DsG~Y~C~~~N~ 82 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLW----FLPAALEDSGLYTCVVRNS 82 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEE----EccCCcccCeEEEEEEcCC
Confidence 3566789999999999998 6899999999987643211 1233333456665 4555999999999999999
Q ss_pred CCceeEEEEEEEE
Q psy18191 213 LGFARSKNATLDV 225 (238)
Q Consensus 213 ~G~~~s~~~~L~V 225 (238)
.|..+. .+.|.|
T Consensus 83 ~g~~~~-~~~L~v 94 (94)
T cd05756 83 TYCMKV-SISLTV 94 (94)
T ss_pred CccEEE-EEEEEC
Confidence 999974 888865
No 83
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.49 E-value=1.2e-12 Score=103.50 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=68.7
Q ss_pred EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEe-----
Q psy18191 82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD----- 156 (238)
Q Consensus 82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~----- 156 (238)
.|.+.++..+|+|.|+|.+.+.. | .....+.+.+ ...+.+..+.+|+.+.|.|.+.
T Consensus 99 ~L~I~~v~~~DsG~Y~C~a~N~~--~-----------~~~~~i~L~V------~~~~~~~~~~~G~~v~L~C~~~~~~~~ 159 (227)
T PHA02826 99 NLWIGNVINIDEGIYICTISSGN--I-----------CEESTIRLTF------DSGTINYQFNSGKDSKLHCYGTDGISS 159 (227)
T ss_pred eEEECCCChHHCEEEEEEEEECC--c-----------ceEEEEEEEE------ecCCccceEecCCCEEEEeeCCCCccc
Confidence 45666777777777776665522 1 1111111111 1122345678899999999985
Q ss_pred eeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191 157 GYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNEL 213 (238)
Q Consensus 157 g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~ 213 (238)
|.|.|+++|+|+|.++... .+.... .++.|. |..++.+|+|.|+|.|....
T Consensus 160 ~~p~p~I~WyKng~~l~~~--~r~~~~~~~~~L~----I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 160 TFKDYTLTWYKNGNIVLYT--DRIQLRNNNSTLV----IKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred cCCCceEEEEECCEECCCC--CCEEEeCCCCEEE----ECcCCHHhCEEEEEEEEEeE
Confidence 3467999999999998742 222222 233455 56669999999999999875
No 84
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=3.2e-13 Score=89.68 Aligned_cols=75 Identities=29% Similarity=0.541 Sum_probs=54.0
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCE---EeeccCCc---cEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGS---LVSAEIGS---HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~---~l~~~~~~---~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~ 219 (238)
|+.+.|.|.+.|.|.|.+.|+|++. .+...... .......+.|. |..+..+|+|.|.|.|.|..|... .
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~N~~G~~~-~ 75 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLV----IYNAQPQDAGLYTCTARNSGGLLR-A 75 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEE----EccCCcccCEEEEEEEecCCceEE-E
Confidence 7889999999999999999999742 11111011 11112234454 556699999999999999999996 5
Q ss_pred EEEEEE
Q psy18191 220 NATLDV 225 (238)
Q Consensus 220 ~~~L~V 225 (238)
.+.|.|
T Consensus 76 ~~~l~v 81 (81)
T cd05765 76 NFPLSV 81 (81)
T ss_pred EEEEeC
Confidence 888875
No 85
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.48 E-value=3.9e-13 Score=87.94 Aligned_cols=73 Identities=30% Similarity=0.473 Sum_probs=51.4
Q ss_pred EEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191 149 TTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT 222 (238)
Q Consensus 149 ~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~ 222 (238)
+.|.|.+.| .|.|.+.|+++|..+...................+.|..+..+|+|.|+|.|.|.+|.... ++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV-TAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeE-EEe
Confidence 369999999 9999999999999887542222111111111122236777999999999999999999853 543
No 86
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.45 E-value=4.7e-13 Score=88.18 Aligned_cols=77 Identities=26% Similarity=0.515 Sum_probs=59.3
Q ss_pred CEEEeCCCceEEeCCCcEEEEEEEeeeCC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191 132 PRITEHPASAVVPRHEPTTLNCKADGYPE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210 (238)
Q Consensus 132 P~i~~~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~ 210 (238)
|.+...|....+.+|++++|.|.+.+.|. +.+.|++||..+.. .++.+. |..+ .+|+|.|+|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~---------~~~~l~----i~~~-~~dsG~Y~C~a~ 66 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET---------TTNSYR----IRAA-NNDSGEYRCQTQ 66 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec---------cCCeEE----Eeec-ccCCEEeEEECC
Confidence 56777788899999999999999999886 46999999987742 134443 5556 899999999999
Q ss_pred eCCCceeEEEEEEEE
Q psy18191 211 NELGFARSKNATLDV 225 (238)
Q Consensus 211 N~~G~~~s~~~~L~V 225 (238)
|. ..|..++|.|
T Consensus 67 ~~---~~S~~v~l~V 78 (78)
T cd05752 67 GS---SLSDPVHLEV 78 (78)
T ss_pred CC---cCCCCEEEeC
Confidence 86 2235666654
No 87
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.44 E-value=2.1e-12 Score=107.96 Aligned_cols=148 Identities=12% Similarity=0.116 Sum_probs=90.1
Q ss_pred CCCccEEEecccccccc-----ceEEEEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEE
Q psy18191 61 YPKPICLRFQDLLPQSK-----QGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRIT 135 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~-----~g~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~ 135 (238)
.+.+++.|+|++..... .|. .+.+..+..+|+|.|+|.+.|.. |..... ..+.... ..+|.+.
T Consensus 58 ~p~~~i~W~K~g~~~~~~~~~~~g~-~l~i~~~~~~DsG~Y~C~a~N~~--g~~~~s------~~L~V~~---~~~~~~~ 125 (326)
T PHA02785 58 YNILDILWEKRGADNDRIIPIDNGS-NMLILNPTQSDSGIYICITKNET--YCDMMS------LNLTIVS---VSESNID 125 (326)
T ss_pred CCCceEEEEECCCccceEEEccCCc-eEEEcccCcccCeEEEEEEECCC--cceEEE------EEEEEEe---cCCCccc
Confidence 45788999998742111 122 23456777899999998877642 211111 1111111 1223332
Q ss_pred eCCCceEEeCCCcEEEEEE-----EeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191 136 EHPASAVVPRHEPTTLNCK-----ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210 (238)
Q Consensus 136 ~~~~~~~~~~G~~~~L~C~-----~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~ 210 (238)
..+.+..+.+|+.+.|.|. ..+.|.|.++|+++.. +. ..+.....++.|.+..+ +.+|.|.|+|.|.
T Consensus 126 ~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~---~~r~~~~~~~~L~i~~v----~~~d~G~Y~C~~~ 197 (326)
T PHA02785 126 LISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR---NKRLKQRTPGIITIEDV----RKNDAGYYTCVLK 197 (326)
T ss_pred eeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC---CcceEecCCCeEEEeec----ChhhCeEEEEEEE
Confidence 2233455678999999997 2467999999988652 22 22233334566765554 9999999999999
Q ss_pred eCCCceeE---EEEEEEEccC
Q psy18191 211 NELGFARS---KNATLDVAGK 228 (238)
Q Consensus 211 N~~G~~~s---~~~~L~V~~~ 228 (238)
|..|.... ..+.|.|..+
T Consensus 198 n~~g~~~~~~t~~v~l~V~~~ 218 (326)
T PHA02785 198 YIYGDKTYNVTRIVKLEVRDR 218 (326)
T ss_pred eccCCEEEeEEEEEEEEEecc
Confidence 99987532 2456767543
No 88
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.43 E-value=2e-12 Score=86.60 Aligned_cols=70 Identities=23% Similarity=0.473 Sum_probs=56.7
Q ss_pred CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191 137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL 213 (238)
Q Consensus 137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~ 213 (238)
.|.+..+..|+++.|.|.+.+ |.|.+.|+++|.++..+ ..++.+.++.|.| .+++.+|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~--~~r~~~~~~~L~I----~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE--SAKYLLYRDGLLI----FNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC--CceEEEECCcEEE----eCCCHHHCEEEEEEEEecc
Confidence 366788999999999999864 77899999999998754 2345556777764 5559999999999999874
No 89
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.42 E-value=5.1e-12 Score=86.54 Aligned_cols=91 Identities=18% Similarity=0.278 Sum_probs=65.6
Q ss_pred CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCccE-EEe--cCCcEEEEEeecCCCCCC-CeEE
Q psy18191 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSHR-ILL--PAGSLFFLSLVHGKKDTD-SGVY 205 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~-~~~--~~~~l~~~~vi~~v~~~d-~G~Y 205 (238)
||.| .......+.+|+++.|.|.+.+.|+|. |.|.+++..|......+. +.. ..+.....+.|..+...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 6777 445678889999999999999988874 799998877765322222 221 122333444578877767 7999
Q ss_pred EEEEEeCCCceeEEEEEE
Q psy18191 206 WCVARNELGFARSKNATL 223 (238)
Q Consensus 206 ~C~a~N~~G~~~s~~~~L 223 (238)
.|.|.|.+|++. ..+.|
T Consensus 81 ~C~a~N~~G~d~-~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGT-AIIQL 97 (98)
T ss_pred EEEEEeCCccce-EEEEe
Confidence 999999999996 47665
No 90
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.40 E-value=2.9e-12 Score=86.77 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=63.4
Q ss_pred CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA 216 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~ 216 (238)
|..+.+.+|+++.|.|.+.+ |.+.+.|++++..+..... ..+.....+.|. |..++.+|+|.|.|.|.|..+..
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~----I~~~~~~D~G~Y~C~a~~~~~~~ 77 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLL----IRSVSPADAGVYTCQSVEHGFKQ 77 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEE----EccCCHHHCEEEEEEEecCccce
Confidence 45577889999999999977 8899999999987764311 123334445555 45559999999999999877665
Q ss_pred eEEEEEEEEcc
Q psy18191 217 RSKNATLDVAG 227 (238)
Q Consensus 217 ~s~~~~L~V~~ 227 (238)
...++.|.|..
T Consensus 78 ~~~~~~l~V~~ 88 (89)
T cd04979 78 TLATYSLNVLE 88 (89)
T ss_pred eEeEEEEEEec
Confidence 55688888754
No 91
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.38 E-value=3e-12 Score=85.89 Aligned_cols=78 Identities=27% Similarity=0.430 Sum_probs=60.8
Q ss_pred eCCCceEEeCCCcEEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191 136 EHPASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214 (238)
Q Consensus 136 ~~~~~~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G 214 (238)
..|....+.+|++++|.|.+.+ .|.|.+.|++++..+.. .....++.|. |..++.+|+|.|.|.|.|..|
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-----~~~~~~~~L~----I~~v~~~DsG~Y~C~a~n~~g 76 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS-----RAMDFNGILT----IRNVQLSDAGTYVCTGSNMLD 76 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC-----cccccCCEEE----ECCCCHHHCEEEEEEEeccCC
Confidence 3466788899999999999864 78899999999866532 1122345555 566699999999999999999
Q ss_pred ceeEEEEEE
Q psy18191 215 FARSKNATL 223 (238)
Q Consensus 215 ~~~s~~~~L 223 (238)
.... .+.|
T Consensus 77 ~~~~-~~~l 84 (85)
T cd05754 77 TDEA-TATL 84 (85)
T ss_pred eEeE-EEEE
Confidence 9974 7766
No 92
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.37 E-value=1.1e-11 Score=82.87 Aligned_cols=80 Identities=30% Similarity=0.512 Sum_probs=58.8
Q ss_pred eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecC--CcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191 141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA--GSLFFLSLVHGKKDTDSGVYWCVARNELGFARS 218 (238)
Q Consensus 141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~--~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s 218 (238)
..+..|+.+.|.|.+.+.|.|.+.|++++..+............. ..|. |..+..+|+|.|.|.|.|..|...
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~----i~~~~~~d~g~Y~C~~~n~~g~~~- 78 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLI----LESVVPSDSGKYTCIVENKYGSIN- 78 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEE----EeECCcccCEEEEEEEEECCceEE-
Confidence 456789999999999999999999999998876421111111111 1233 455699999999999999999986
Q ss_pred EEEEEEE
Q psy18191 219 KNATLDV 225 (238)
Q Consensus 219 ~~~~L~V 225 (238)
.++.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05729 79 HTYKVDV 85 (85)
T ss_pred EEEEEeC
Confidence 4887764
No 93
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.36 E-value=6.8e-12 Score=83.98 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=55.8
Q ss_pred CCcEEEEEEEeee--CCCEEEEEeCCEEeeccCC-c-cEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEE
Q psy18191 146 HEPTTLNCKADGY--PEPRIEWYKDGSLVSAEIG-S-HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNA 221 (238)
Q Consensus 146 G~~~~L~C~~~g~--P~p~i~W~~~g~~l~~~~~-~-~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~ 221 (238)
|+.+.|.|.+.|. |.|.+.|++++..+..... . .............+.|..++.+|+|.|.|.|.|..|... .++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~-~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK-EST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE-EEE
Confidence 7899999999999 8899999987765432100 0 111111112223334788899999999999999999986 588
Q ss_pred EEEE
Q psy18191 222 TLDV 225 (238)
Q Consensus 222 ~L~V 225 (238)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 8876
No 94
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.34 E-value=5.3e-12 Score=85.86 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=57.6
Q ss_pred CceEEeCCCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191 139 ASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA 216 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~ 216 (238)
....+.+|+.+.|.|.. .|.|.|.+.|++++.++....+.+++.. .+|+|.+..+ +.+|+|.|+|.|+|.+...
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v----~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKV----EASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeec----CHhhCceeEEEEEecccCC
Confidence 34678899999999975 7899999999999876432213334444 4799987766 9999999999999988554
No 95
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.31 E-value=1.8e-11 Score=80.24 Aligned_cols=72 Identities=24% Similarity=0.453 Sum_probs=49.2
Q ss_pred EEEEEEEee-eCCCEEEEEeCCEEeeccCC-ccEEEecC-CcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191 149 TTLNCKADG-YPEPRIEWYKDGSLVSAEIG-SHRILLPA-GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT 222 (238)
Q Consensus 149 ~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~-~~~~~~~~-~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~ 222 (238)
+.|.|.+.+ .|.|.+.|+++|..+..... ..++.... +.. ..+.|..+..+|+|.|+|.|.|..|... .++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~-~~L~I~~~~~~DsG~Y~C~a~N~~g~~~-~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKS-SELQISKASLADNGEYKCMVSSKLGNDS-VTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcE-EEEEECcCCcccCEEEEEEEEeCCCcee-EEEe
Confidence 469999874 68899999999998864321 12222211 111 1123677799999999999999999985 3543
No 96
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.31 E-value=5.9e-11 Score=79.39 Aligned_cols=80 Identities=25% Similarity=0.323 Sum_probs=55.0
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC--ceeEEEEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG--FARSKNAT 222 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G--~~~s~~~~ 222 (238)
|+++.|.|.+.|.|.|.+.|++.+....... ...............+.|..++.+|+|.|.|.|.|..+ .. ++++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~-~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKA-FKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcce-eEEEE
Confidence 7899999999999999999998765432100 00011122222233334778899999999999999876 44 46888
Q ss_pred EEEc
Q psy18191 223 LDVA 226 (238)
Q Consensus 223 L~V~ 226 (238)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 8875
No 97
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.31 E-value=1.1e-11 Score=82.67 Aligned_cols=75 Identities=25% Similarity=0.329 Sum_probs=58.1
Q ss_pred ceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191 140 SAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS 218 (238)
Q Consensus 140 ~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s 218 (238)
...+.+|+.++|.|.+. +.+.+.+.|+|+|..+... .....+. |..++.+|+|.|.|.|.|..|...|
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-------~~~~~l~----I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-------HSNSNLS----IPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-------CCCceEE----ECccCHHHCEEEEEEEEeCCceecC
Confidence 45688999999999985 4667889999999766421 1133444 5556999999999999999998877
Q ss_pred EEEEEEE
Q psy18191 219 KNATLDV 225 (238)
Q Consensus 219 ~~~~L~V 225 (238)
..+.|+|
T Consensus 77 ~~~~i~~ 83 (83)
T cd05753 77 EPVSITV 83 (83)
T ss_pred CCEEEEC
Confidence 7777765
No 98
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.29 E-value=7.4e-11 Score=80.64 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=56.6
Q ss_pred CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCC-----ccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191 139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG-----SHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~-----~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~ 212 (238)
.+..+.+|+++.|.|.+.|.|.|.+.|++++..+...+. ..++. .........+.|.++..+|.|.|+|.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 578899999999999999999999999998764321100 11221 111111122237888999999999999983
Q ss_pred CCceeEEEEEEEE
Q psy18191 213 LGFARSKNATLDV 225 (238)
Q Consensus 213 ~G~~~s~~~~L~V 225 (238)
.... ..++|.|
T Consensus 85 ~~~~--~~~~~~v 95 (95)
T cd05882 85 PVRT--AKATVTV 95 (95)
T ss_pred cccc--EEEEEEC
Confidence 3222 3556554
No 99
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.27 E-value=3.7e-11 Score=81.61 Aligned_cols=78 Identities=19% Similarity=0.378 Sum_probs=57.7
Q ss_pred ceEEeCCCcEEEEEEEee-----eCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191 140 SAVVPRHEPTTLNCKADG-----YPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214 (238)
Q Consensus 140 ~~~~~~G~~~~L~C~~~g-----~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G 214 (238)
...+.+|++..|.|...+ .|.|.+.|+|++.++... ..++ ..++.|.+ +.+..+|+|.|+|.|.|..|
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~--~~~~-~~~~~L~I----~~v~~~DsG~YtC~~~n~~~ 76 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--RKRF-VKGSKLLI----QNVTEEDAGNYTCKLTFTHN 76 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC--ccEE-ecCCEEEE----eeCChhhCEEEEEEEEecCC
Confidence 356778999999998643 367899999999988742 2222 25666764 44599999999999999998
Q ss_pred ceeEEEEEEEE
Q psy18191 215 FARSKNATLDV 225 (238)
Q Consensus 215 ~~~s~~~~L~V 225 (238)
... ..+++.+
T Consensus 77 ~~~-~~~t~t~ 86 (92)
T cd05757 77 GKQ-YNVTRTI 86 (92)
T ss_pred CEE-EEEEEEE
Confidence 874 3554443
No 100
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.26 E-value=6.5e-11 Score=77.95 Aligned_cols=80 Identities=33% Similarity=0.652 Sum_probs=60.7
Q ss_pred CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~ 210 (238)
+|.+...+ ..+.+|+.+.|.|.+.+.|.+.+.|++++..+... .+.+. +..+..+|+|.|.|.|.
T Consensus 1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~---------~~~~~----~~~~~~~~~g~y~C~~~ 65 (80)
T PF13895_consen 1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS---------QNGLF----IPNVSPEDSGNYTCRAS 65 (80)
T ss_dssp --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE---------SSEEE----ESSEEGGGTEEEEEEEE
T ss_pred CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee---------eeeee----eeeeccccCEEEEEEEE
Confidence 46666544 66889999999999999999999999999777632 11132 34558999999999999
Q ss_pred eCCCceeEEEEEEEE
Q psy18191 211 NELGFARSKNATLDV 225 (238)
Q Consensus 211 N~~G~~~s~~~~L~V 225 (238)
|..|...+.++.|.|
T Consensus 66 ~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 66 NGSGSNTSTSVNVTV 80 (80)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred eCCCCeEeeeEEeeC
Confidence 987766566777776
No 101
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.25 E-value=3e-11 Score=82.02 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=59.0
Q ss_pred CCceEEeCCCcEEEEEE-EeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe-EEEEEEEeCCCc
Q psy18191 138 PASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG-VYWCVARNELGF 215 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~-~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G-~Y~C~a~N~~G~ 215 (238)
...+.+.+|+.+.|.|. ..|.|.|.|.|++++..+... ..+.....+|+|.+..+ ..+|+| .|.|.|.|....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~GnL~fs~v----~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNGNLYFANV----EEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCceEEEEEE----ehhhCCCCeEEEEEccccc
Confidence 45688999999999997 699999999999877554432 34444456799997777 999999 799999998744
Q ss_pred e
Q psy18191 216 A 216 (238)
Q Consensus 216 ~ 216 (238)
.
T Consensus 85 ~ 85 (95)
T cd05845 85 T 85 (95)
T ss_pred c
Confidence 3
No 102
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.21 E-value=2.3e-10 Score=78.28 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeec-c-----CCccEEEec--CCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA-E-----IGSHRILLP--AGSLFFLSLVHGKKDTDSGVYWCVA 209 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~-~-----~~~~~~~~~--~~~l~~~~vi~~v~~~d~G~Y~C~a 209 (238)
+.++.+.+|+++.|.|.+.+.|.|.+.|++.+..+.. . ...+..... .+... +.|..++.+|+|.|.|.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~s--L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS--ISISDVSLSDEGQYTCSL 81 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEE--EEECcCCcccCEEEEEEe
Confidence 4678899999999999999999999999863322111 0 011221111 12222 237788999999999999
Q ss_pred EeCCCceeEEEEEEEE
Q psy18191 210 RNELGFARSKNATLDV 225 (238)
Q Consensus 210 ~N~~G~~~s~~~~L~V 225 (238)
.+..+.. ..++|.|
T Consensus 82 ~t~~~~~--~~~~l~v 95 (95)
T cd07701 82 FTMPVKT--SKAYLTV 95 (95)
T ss_pred EeecCcc--EEEEEEC
Confidence 9965443 4777765
No 103
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.19 E-value=2e-10 Score=71.56 Aligned_cols=63 Identities=38% Similarity=0.646 Sum_probs=49.0
Q ss_pred CCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191 145 RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214 (238)
Q Consensus 145 ~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G 214 (238)
+|+++.|.|.+.+.|.+.+.|++++..+. ...........|.+. .+...|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~L~i~----~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP---ESNRLSASGSTLTIK----SVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC---CCCEEecCCcEEEEe----eCCcccCEEEEEEEecCCC
Confidence 48899999999899999999999988776 122233334556544 4499999999999999876
No 104
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.13 E-value=7.3e-10 Score=75.16 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=56.7
Q ss_pred eEEeCCCcEEEEEEEeeeCCCEEEEEeCCE--Eeecc-CCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE-eCCCce
Q psy18191 141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGS--LVSAE-IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR-NELGFA 216 (238)
Q Consensus 141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~--~l~~~-~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~-N~~G~~ 216 (238)
+...+|+.+.|.|.. +.|.|.+.|++.+. ..... ....+....++.|.|.. +..+|+|.|+|.|. |..+..
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~----~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRS----LQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEee----CChhHCEEEEEEEEccCCeEE
Confidence 557889999999996 58999999998432 21110 01233344556666544 49999999999998 566766
Q ss_pred eEEEEEEEEcc
Q psy18191 217 RSKNATLDVAG 227 (238)
Q Consensus 217 ~s~~~~L~V~~ 227 (238)
. ..++|.|..
T Consensus 81 ~-~~~~l~v~~ 90 (91)
T cd05871 81 L-AKYTLHVIE 90 (91)
T ss_pred E-EEEEEEEec
Confidence 5 588888864
No 105
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.11 E-value=8.7e-10 Score=74.01 Aligned_cols=81 Identities=21% Similarity=0.211 Sum_probs=53.7
Q ss_pred CCcEEEEEEEeeeCC--CEEEEEeCCEEeeccC--Cc-cEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEE
Q psy18191 146 HEPTTLNCKADGYPE--PRIEWYKDGSLVSAEI--GS-HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKN 220 (238)
Q Consensus 146 G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~--~~-~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~ 220 (238)
|+++.|.|.+.+.|. ..+.|...+..+.... .. .............+.|..++.+|+|.|+|.|.|..|... ..
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~-~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK-NS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec-cc
Confidence 789999999988664 4789988765432100 00 111111111222333677799999999999999999886 48
Q ss_pred EEEEEcc
Q psy18191 221 ATLDVAG 227 (238)
Q Consensus 221 ~~L~V~~ 227 (238)
+.|.|.+
T Consensus 80 t~~~V~~ 86 (86)
T cd05862 80 TIVIVHE 86 (86)
T ss_pred EEEEEeC
Confidence 8998864
No 106
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.05 E-value=3.9e-09 Score=72.00 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=63.9
Q ss_pred CceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCccEEEecC---CcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191 139 ASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSHRILLPA---GSLFFLSLVHGKKDTDSGVYWCVARNELG 214 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~---~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G 214 (238)
..+.+..|+.+.|.|.+++.|+|+ +.|.+++..+...... .....+ ......+.|..++.+|.|.|+|.|.|..+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~-~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDH-YVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccc-eeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 357789999999999999999998 9999998776543222 222111 11222223556699999999999999999
Q ss_pred ceeEEEEEEEEc
Q psy18191 215 FARSKNATLDVA 226 (238)
Q Consensus 215 ~~~s~~~~L~V~ 226 (238)
... .++.|.|+
T Consensus 90 ~~s-~tF~l~v~ 100 (101)
T cd05860 90 SAS-VTFNVYVN 100 (101)
T ss_pred eEE-EEEEEEEe
Confidence 996 69998875
No 107
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.05 E-value=1.7e-09 Score=73.61 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=54.6
Q ss_pred eEEeCCCcEEEEEEE-e----eeCCCEEEEEeCCEEeeccCCccEEEe--cCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191 141 AVVPRHEPTTLNCKA-D----GYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLFFLSLVHGKKDTDSGVYWCVARNEL 213 (238)
Q Consensus 141 ~~~~~G~~~~L~C~~-~----g~P~p~i~W~~~g~~l~~~~~~~~~~~--~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~ 213 (238)
..+..|.+..|.|.- . ..+.|.++|+||+.++... ..+... ....|. |..|..+|+|.|+|.|.|..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~--~~~~~~~~~~~~L~----I~~v~~~D~G~YtC~~~~~~ 78 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKD--NEKFYSLKGSTYLH----IIDVSLNDSGYYTCKLQFTH 78 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCC--CcceEecCCCCEEE----EEEcChhhCEEEEEEEEEee
Confidence 456778999999972 2 3467899999999988743 222222 223454 45559999999999999997
Q ss_pred Cce---eEEEEEEEEc
Q psy18191 214 GFA---RSKNATLDVA 226 (238)
Q Consensus 214 G~~---~s~~~~L~V~ 226 (238)
|.. .++.+.|.|.
T Consensus 79 ~g~~y~vtr~~~l~v~ 94 (95)
T cd05897 79 EGKKYNITRIIKLRIV 94 (95)
T ss_pred CCEEEEEEEEEEEEEc
Confidence 654 2234555553
No 108
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.03 E-value=5.2e-09 Score=76.82 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=73.5
Q ss_pred EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeee-CC
Q psy18191 82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PE 160 (238)
Q Consensus 82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~-P~ 160 (238)
.|.+.+++..|+|.|.|...+.. |. ....+.+.+..+|.+...+......+|+.+.|.|.+.|. |.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~--~~-----------~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~ 68 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPP--HQ-----------AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPL 68 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccC--cc-----------eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCC
Confidence 36778899999999997765421 11 111122235578888776666655588999999999986 54
Q ss_pred -CEEEEEeCCEEeec-----cC--CccEEEecCCcEEEEEeecCC--CCCCCeEEEEEEEeCCC
Q psy18191 161 -PRIEWYKDGSLVSA-----EI--GSHRILLPAGSLFFLSLVHGK--KDTDSGVYWCVARNELG 214 (238)
Q Consensus 161 -p~i~W~~~g~~l~~-----~~--~~~~~~~~~~~l~~~~vi~~v--~~~d~G~Y~C~a~N~~G 214 (238)
+.|.|+++|..... .. ........+|++.+...+... ...+...|+|.+.+..-
T Consensus 69 ~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 69 DVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 48999999854221 10 011122345666554443322 22235589999987543
No 109
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.02 E-value=5.6e-09 Score=71.43 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=54.5
Q ss_pred CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEe-eccC----CccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191 139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV-SAEI----GSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNE 212 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l-~~~~----~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~ 212 (238)
.++.+.+|+++.|.|.+.+.|.+.+.|++.+..+ .... ...++.. ....-...+.|..++.+|+|.|.|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 5678899999999999998899999998632211 1000 1112221 11111112237778999999999999987
Q ss_pred CCceeEEEEEEEE
Q psy18191 213 LGFARSKNATLDV 225 (238)
Q Consensus 213 ~G~~~s~~~~L~V 225 (238)
.... ..+.|.|
T Consensus 85 ~~~~--~~~~~~v 95 (95)
T cd05717 85 PVQT--AKATVTV 95 (95)
T ss_pred CCce--EEEEEEC
Confidence 6443 3666654
No 110
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.00 E-value=1.9e-08 Score=66.27 Aligned_cols=83 Identities=35% Similarity=0.561 Sum_probs=60.0
Q ss_pred CceEEeCCCcEEEEEEEeeeCCCEEEEEeC-CEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191 139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKD-GSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR 217 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~ 217 (238)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+... ........+. .....|..+...|+|.|.|.+.|..+...
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~--~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES--GRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC--CcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 456778999999999999888899999998 7766521 2222222211 11222556699999999999999999886
Q ss_pred EEEEEEEE
Q psy18191 218 SKNATLDV 225 (238)
Q Consensus 218 s~~~~L~V 225 (238)
. .+.|.|
T Consensus 79 ~-~~~l~V 85 (86)
T smart00410 79 S-TTTLTV 85 (86)
T ss_pred E-EEEEEE
Confidence 4 577776
No 111
>smart00409 IG Immunoglobulin.
Probab=99.00 E-value=1.9e-08 Score=66.27 Aligned_cols=83 Identities=35% Similarity=0.561 Sum_probs=60.0
Q ss_pred CceEEeCCCcEEEEEEEeeeCCCEEEEEeC-CEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCcee
Q psy18191 139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKD-GSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR 217 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~ 217 (238)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+... ........+. .....|..+...|+|.|.|.+.|..+...
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~--~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~ 78 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES--GRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSAS 78 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC--CcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence 456778999999999999888899999998 7766521 2222222211 11222556699999999999999999886
Q ss_pred EEEEEEEE
Q psy18191 218 SKNATLDV 225 (238)
Q Consensus 218 s~~~~L~V 225 (238)
. .+.|.|
T Consensus 79 ~-~~~l~V 85 (86)
T smart00409 79 S-TTTLTV 85 (86)
T ss_pred E-EEEEEE
Confidence 4 577776
No 112
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.98 E-value=3.3e-09 Score=72.20 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=51.9
Q ss_pred eEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccE---------------E-EecCCcEEEEEeecCCCCCCCeE
Q psy18191 141 AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHR---------------I-LLPAGSLFFLSLVHGKKDTDSGV 204 (238)
Q Consensus 141 ~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~---------------~-~~~~~~l~~~~vi~~v~~~d~G~ 204 (238)
+.+.+|++++|.|.+.+.+.+.+.|++++........... . ...++. ..+.|..++.+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~--~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGS--FPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCe--EEEEECCCCHHHCEE
Confidence 4567899999999999999999999977633211100000 0 012222 223478889999999
Q ss_pred EEEEEEeCCCcee
Q psy18191 205 YWCVARNELGFAR 217 (238)
Q Consensus 205 Y~C~a~N~~G~~~ 217 (238)
|.|.+.|..++.+
T Consensus 80 Y~C~v~~~~~~~~ 92 (94)
T cd07690 80 YICEVEDKKEEVE 92 (94)
T ss_pred EEEEECCccceEE
Confidence 9999999988764
No 113
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.95 E-value=5.7e-09 Score=68.54 Aligned_cols=65 Identities=17% Similarity=0.390 Sum_probs=44.2
Q ss_pred cEEEEEEE-eeeCCCEEEEEeCCEEeeccCC---ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191 148 PTTLNCKA-DGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA 216 (238)
Q Consensus 148 ~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~---~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~ 216 (238)
.+.|.|.+ .|.|+++|+||+++.+|..... ........+.|.+ ......|.+.|+|.|.|.++..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~----~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRF----PVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEE----EeeeccCCcEEEEEEEChhhCC
Confidence 36899996 6789999999999999864210 0000011123333 3347778889999999998764
No 114
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.89 E-value=2.8e-09 Score=69.00 Aligned_cols=74 Identities=31% Similarity=0.571 Sum_probs=48.1
Q ss_pred CCEEEeCCCceEEeCCCcEEEEEEEeeeC-CCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191 131 VPRITEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a 209 (238)
||.|...+.......+. +.|.|.+.+.| .+.++|+ +....... .........+.|. |..+..+|.|.|+|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~-~~~~~~~~~~~L~----i~~v~~~~~g~y~C~a 73 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS-NSRGSSSSNSTLT----ISNVTRSDNGTYTCIA 73 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE-EEEEEEEEEEEEE----ESSCCGGGTEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee-eeeeccceeeEEE----EccCCHHhCcEEEEEE
Confidence 57777776666655555 99999998887 8899999 22111110 0011111223333 5677999999999999
Q ss_pred Ee
Q psy18191 210 RN 211 (238)
Q Consensus 210 ~N 211 (238)
.|
T Consensus 74 ~N 75 (75)
T PF13927_consen 74 SN 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 98
No 115
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.88 E-value=8.8e-09 Score=64.87 Aligned_cols=62 Identities=24% Similarity=0.377 Sum_probs=43.1
Q ss_pred CCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEE-EEEeecCCCCCCCeEEEEEE
Q psy18191 146 HEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF-FLSLVHGKKDTDSGVYWCVA 209 (238)
Q Consensus 146 G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~-~~~vi~~v~~~d~G~Y~C~a 209 (238)
|+.+.|.|.+ .+.+.+.+.|++++..+... ........+... ..+.|..++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG--STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEE--EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCc--ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 78888999999998765432 111112222211 11337888999999999986
No 116
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.87 E-value=2.7e-08 Score=66.23 Aligned_cols=65 Identities=18% Similarity=0.345 Sum_probs=49.9
Q ss_pred CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191 139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N 211 (238)
.+.++..|+++.|.|...+. .+.+.|+++|..+..+ .++......+.+..+ ..+|+|.|.|.+.-
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~---~r~~~~~~GLlI~~~----~~~dsG~Y~C~s~E 68 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ---FSYRVGTDGLLILVT----SPEHSGTYRCYSEE 68 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC---cceEEeCCCCEEEEC----CHhhCEEEEEEEec
Confidence 45788999999999998775 6699999999988642 334444444554444 99999999999883
No 117
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.85 E-value=2.4e-08 Score=68.36 Aligned_cols=81 Identities=26% Similarity=0.389 Sum_probs=57.9
Q ss_pred ceEEeCCCcEEEEEEE-e----------eeCCCEEEEEeCCEEeeccC----CccEEEecCCcEEEEEeecCCCCCCCeE
Q psy18191 140 SAVVPRHEPTTLNCKA-D----------GYPEPRIEWYKDGSLVSAEI----GSHRILLPAGSLFFLSLVHGKKDTDSGV 204 (238)
Q Consensus 140 ~~~~~~G~~~~L~C~~-~----------g~P~p~i~W~~~g~~l~~~~----~~~~~~~~~~~l~~~~vi~~v~~~d~G~ 204 (238)
...+.+|+.+.|.|.. . ..+...+.|+|++..+.... ...++...++.|.+..+ ..+|+|.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa----~~eDSG~ 84 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPA----ELQDSGL 84 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeC----ChhhCeE
Confidence 4677899999999985 1 12234799999975554321 12366667788886666 9999999
Q ss_pred EEEEEEeCCCceeEEEEEEEE
Q psy18191 205 YWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 205 Y~C~a~N~~G~~~s~~~~L~V 225 (238)
|+|.+.|.-.-.. ..+.|.|
T Consensus 85 Y~C~~rN~t~C~~-~~i~l~V 104 (104)
T cd05896 85 YTCVLRNSTYCMK-VSMSLTV 104 (104)
T ss_pred EEEEECCCCcceE-EEEEEEC
Confidence 9999999886665 3665554
No 118
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.83 E-value=2e-08 Score=79.53 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=60.1
Q ss_pred CceEEeCCCcEEEEEEEeeeCC-----------CEEEEEeCCEEeeccCC-c---------cEEEecCCcEEEEEeecCC
Q psy18191 139 ASAVVPRHEPTTLNCKADGYPE-----------PRIEWYKDGSLVSAEIG-S---------HRILLPAGSLFFLSLVHGK 197 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~g~P~-----------p~i~W~~~g~~l~~~~~-~---------~~~~~~~~~l~~~~vi~~v 197 (238)
..+.+.+|+++.|.|.+.+.|. +.+.|+|++........ . ......++.|. |..+
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~----I~~v 105 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLW----IGNV 105 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEE----ECCC
Confidence 4577889999999999877554 48999998864311100 0 11111234555 5666
Q ss_pred CCCCCeEEEEEEEeCCCceeEEEEEEEEccC
Q psy18191 198 KDTDSGVYWCVARNELGFARSKNATLDVAGK 228 (238)
Q Consensus 198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 228 (238)
+.+|+|.|+|.|.|..|... ..+.|.|...
T Consensus 106 ~~~DsG~Y~C~a~N~~~~~~-~~i~L~V~~~ 135 (227)
T PHA02826 106 INIDEGIYICTISSGNICEE-STIRLTFDSG 135 (227)
T ss_pred ChHHCEEEEEEEEECCcceE-EEEEEEEecC
Confidence 99999999999999998876 5888888543
No 119
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.83 E-value=4.9e-08 Score=64.81 Aligned_cols=76 Identities=28% Similarity=0.469 Sum_probs=46.5
Q ss_pred cEEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEecCCcE-E--EEEeecCCCCCCCeEEEEEEEeCCCcee-EEEEE
Q psy18191 148 PTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGSL-F--FLSLVHGKKDTDSGVYWCVARNELGFAR-SKNAT 222 (238)
Q Consensus 148 ~~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l-~--~~~vi~~v~~~d~G~Y~C~a~N~~G~~~-s~~~~ 222 (238)
.+.|.|.+.| .|.|.++|+++|..+... ........++.. . ....+......|.|.|+|.|.|...... ..+++
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGA-TYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCc-eeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 3689999987 688999999999987642 111122223321 1 1112344456678899999999764432 13445
Q ss_pred EE
Q psy18191 223 LD 224 (238)
Q Consensus 223 L~ 224 (238)
|.
T Consensus 80 l~ 81 (82)
T cd05759 80 LD 81 (82)
T ss_pred Ec
Confidence 44
No 120
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.82 E-value=3.8e-08 Score=66.72 Aligned_cols=87 Identities=25% Similarity=0.400 Sum_probs=57.9
Q ss_pred CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~ 210 (238)
+|.+...|. ..+..|+.++|.|... .+...+.|+++|...... .. ......-...|..|+.+|+|.|+|.+.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~----~~--~~~~~~~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK----KP--PEPQNKAKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc----cc--CCCceeEEEEccCCChhHCEEEEEEEE
Confidence 466666654 5678999999999885 667889999998754321 11 111111112266779999999999999
Q ss_pred eCC-C-ceeEEEEEEEE
Q psy18191 211 NEL-G-FARSKNATLDV 225 (238)
Q Consensus 211 N~~-G-~~~s~~~~L~V 225 (238)
|.. + +..|..+.|.|
T Consensus 74 ~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 74 SGVALWSEPSDPLELVV 90 (91)
T ss_pred CCCCccCCCCCcEEEEe
Confidence 862 2 33445666665
No 121
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.70 E-value=2.7e-07 Score=64.12 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=54.7
Q ss_pred CCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCE-----Eeecc------------CCccEEEecCCcEEEEEeecCCCCC
Q psy18191 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS-----LVSAE------------IGSHRILLPAGSLFFLSLVHGKKDT 200 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~-----~l~~~------------~~~~~~~~~~~~l~~~~vi~~v~~~ 200 (238)
+.+..+.+|+++.|.|.....+...+.|+|... .+... -.++.....+|+|.+. .++.+
T Consensus 5 ~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~----~v~~~ 80 (105)
T cd05774 5 LVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQ----NVTQK 80 (105)
T ss_pred ccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEe----cCCcc
Confidence 445667889999999875433444899999621 22110 0123334556777754 45999
Q ss_pred CCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 201 DSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 201 d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
|+|.|+|.+.|.-+......+.|.|
T Consensus 81 D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 81 DTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred cCEEEEEEEEeCCccEEEEEEEEEC
Confidence 9999999999988544334666654
No 122
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.64 E-value=1.1e-06 Score=59.91 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=49.5
Q ss_pred CceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeecc------CCccEEEec-CCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191 139 ASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE------IGSHRILLP-AGSLFFLSLVHGKKDTDSGVYWCVARN 211 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~------~~~~~~~~~-~~~l~~~~vi~~v~~~d~G~Y~C~a~N 211 (238)
.++++.+|+++.|.|.+.+.....+.|++-+..+... .+.+..... ++. .....|+.++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~-~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSN-ELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCC-EEEEEECcCCcccCEEEEEEEEc
Confidence 5688999999999999988777778888765433210 122222222 222 22233788899999999999876
Q ss_pred C
Q psy18191 212 E 212 (238)
Q Consensus 212 ~ 212 (238)
.
T Consensus 84 ~ 84 (95)
T cd05881 84 D 84 (95)
T ss_pred c
Confidence 3
No 123
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.59 E-value=1.2e-06 Score=61.07 Aligned_cols=80 Identities=29% Similarity=0.439 Sum_probs=52.7
Q ss_pred CCCcEEEEEEEeeeC------CCEEEEEeCC-----E-EeeccCCc---------cEEEe---cCCcEEEEEeecCCCCC
Q psy18191 145 RHEPTTLNCKADGYP------EPRIEWYKDG-----S-LVSAEIGS---------HRILL---PAGSLFFLSLVHGKKDT 200 (238)
Q Consensus 145 ~G~~~~L~C~~~g~P------~p~i~W~~~g-----~-~l~~~~~~---------~~~~~---~~~~l~~~~vi~~v~~~ 200 (238)
.|++++|.|.....+ .+.+.|++.. . .+...... .+... ..+...+ .|..++.+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL--~I~~v~~s 78 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASL--VITDLRLE 78 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceE--EECCCCHH
Confidence 489999999987653 4689999862 1 11110011 11111 1122222 37788999
Q ss_pred CCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191 201 DSGVYWCVARNELGFARSKNATLDVAG 227 (238)
Q Consensus 201 d~G~Y~C~a~N~~G~~~s~~~~L~V~~ 227 (238)
|+|.|.|.+.|..+... +.+.|.|.+
T Consensus 79 D~G~Y~C~v~~~~~~~~-~~v~L~V~~ 104 (106)
T cd05714 79 DSGRYRCEVIDGIEDEQ-DTVELEVRG 104 (106)
T ss_pred HCEEEEEEEEcCCCceE-EEEEEEEEE
Confidence 99999999999888775 699999875
No 124
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.55 E-value=1.5e-06 Score=60.47 Aligned_cols=82 Identities=26% Similarity=0.268 Sum_probs=52.5
Q ss_pred CCCcEEEEEEEeeeC------CCEEEEEeCCE------E-eeccC--------CccEEEec-CCcEEEEEeecCCCCCCC
Q psy18191 145 RHEPTTLNCKADGYP------EPRIEWYKDGS------L-VSAEI--------GSHRILLP-AGSLFFLSLVHGKKDTDS 202 (238)
Q Consensus 145 ~G~~~~L~C~~~g~P------~p~i~W~~~g~------~-l~~~~--------~~~~~~~~-~~~l~~~~vi~~v~~~d~ 202 (238)
.|++++|.|.....| ...|.|+|... . +.... ...+.... .......+.|..++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999986653 35699998531 1 11100 01122221 101011223777799999
Q ss_pred eEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191 203 GVYWCVARNELGFARSKNATLDVAG 227 (238)
Q Consensus 203 G~Y~C~a~N~~G~~~s~~~~L~V~~ 227 (238)
|.|.|.+.+..+... ..+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~-~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDES-VVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceE-EEEEEEEEE
Confidence 999999999999886 599999865
No 125
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.53 E-value=8.3e-07 Score=62.09 Aligned_cols=75 Identities=23% Similarity=0.247 Sum_probs=50.3
Q ss_pred CCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCE---E--eecc------CCccEEE-e-c--CCcEEEEEeecCCCCCC
Q psy18191 137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS---L--VSAE------IGSHRIL-L-P--AGSLFFLSLVHGKKDTD 201 (238)
Q Consensus 137 ~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~---~--l~~~------~~~~~~~-~-~--~~~l~~~~vi~~v~~~d 201 (238)
.|..+.+.+|+++.|.|.+.+.+.+.+.|++... + +... ....++. . . .+... ..|..++.+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~--L~I~~~~~~D 81 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSS--LHISAAQLSD 81 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEE--EEECCCCHHH
Confidence 4567889999999999999887888999998531 0 0000 0111221 1 1 12222 2378889999
Q ss_pred CeEEEEEEEeCC
Q psy18191 202 SGVYWCVARNEL 213 (238)
Q Consensus 202 ~G~Y~C~a~N~~ 213 (238)
+|.|.|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999999764
No 126
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.53 E-value=6.4e-07 Score=60.60 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=50.6
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeec--------c--------CCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSA--------E--------IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~--------~--------~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a 209 (238)
|++++|.|.....+...+.|+++...... . ..++.....+++|. |..++.+|+|.|.|..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~----I~~l~~~DsG~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLL----IQNLTKEDSGTYTLQI 76 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEE----EccCCchhcEEEEEEE
Confidence 78999999987766778999986522110 0 01112223445555 5555999999999999
Q ss_pred EeCCCceeEEEEEEEE
Q psy18191 210 RNELGFARSKNATLDV 225 (238)
Q Consensus 210 ~N~~G~~~s~~~~L~V 225 (238)
.+..|......+.|.|
T Consensus 77 ~~~~~~~~~~~~~l~v 92 (92)
T cd05741 77 ISTNGVTENAKFFLRV 92 (92)
T ss_pred EcCCCcEEEEEEEEEC
Confidence 9988776545666553
No 127
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.50 E-value=2e-06 Score=56.68 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=46.0
Q ss_pred cEEEEEEEe-eeCCCEEEEEeCCEEeeccCCccEEEecCCcEE-EEEeecCCCCCCCe-EEEEEEEeCCCceeEEEEEEE
Q psy18191 148 PTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF-FLSLVHGKKDTDSG-VYWCVARNELGFARSKNATLD 224 (238)
Q Consensus 148 ~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~-~~~vi~~v~~~d~G-~Y~C~a~N~~G~~~s~~~~L~ 224 (238)
.+.|.|.+. +.|.+.|+|++++..+... .........+... ....+ ..+.+|-| .|+|.|.|..-........|.
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~-~~~~~~~~~~~t~~S~L~~-~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~ 78 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGK-STVEETWSRMFTVTSQLML-KVTKEDDGVPVICLVDHPAVKDLQTQRYLE 78 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCc-ccceeccCCCcEEEEEEEE-ECchhhCCCEEEEEEcCcccCCceeeEEEE
Confidence 368999975 5688999999999998742 1101111122111 11112 23555555 899999997633323477777
Q ss_pred Ec
Q psy18191 225 VA 226 (238)
Q Consensus 225 V~ 226 (238)
|.
T Consensus 79 V~ 80 (82)
T cd05883 79 VQ 80 (82)
T ss_pred EE
Confidence 75
No 128
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.49 E-value=1.3e-06 Score=61.24 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=49.6
Q ss_pred eCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCE--Eee---c----------cCCccEEEe-cCCcEEEEEeecCCCC
Q psy18191 136 EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS--LVS---A----------EIGSHRILL-PAGSLFFLSLVHGKKD 199 (238)
Q Consensus 136 ~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~--~l~---~----------~~~~~~~~~-~~~~l~~~~vi~~v~~ 199 (238)
..|..+.+.+|++++|.|.+.+ +.+.+.|+|... .+. . .....++.. ..+.....+.|..++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 3466788999999999999987 778899998531 111 0 000112221 1111122233778899
Q ss_pred CCCeEEEEEEEeCC
Q psy18191 200 TDSGVYWCVARNEL 213 (238)
Q Consensus 200 ~d~G~Y~C~a~N~~ 213 (238)
+|+|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999998753
No 129
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.48 E-value=1.5e-06 Score=59.58 Aligned_cols=78 Identities=23% Similarity=0.231 Sum_probs=52.9
Q ss_pred eCCCcEEEEEEEee-eCCCEEEEEeCCEEeeccCC--------------ccEEEecC--CcEEEEEeecCCCCCCCeEEE
Q psy18191 144 PRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIG--------------SHRILLPA--GSLFFLSLVHGKKDTDSGVYW 206 (238)
Q Consensus 144 ~~G~~~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~--------------~~~~~~~~--~~l~~~~vi~~v~~~d~G~Y~ 206 (238)
..|++++|.|.... .....+.|++....+..... ..+..+.. .+|. |..++.+|+|.|.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~----I~~~~~~DsG~Y~ 77 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQ----ISNLKMEDAGSYR 77 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEE----ECCCchHHCEEEE
Confidence 36999999998744 44567999986533321110 11222322 3343 6777999999999
Q ss_pred EEEEeCCCceeEEEEEEEE
Q psy18191 207 CVARNELGFARSKNATLDV 225 (238)
Q Consensus 207 C~a~N~~G~~~s~~~~L~V 225 (238)
|...+..|......+.|.|
T Consensus 78 c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 78 AEINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEEEcCCCCeEEEEEEEEe
Confidence 9999998888666777776
No 130
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.46 E-value=7.3e-07 Score=60.69 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=48.9
Q ss_pred eCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeec--CCCCCCCeEEEEEEEeCCCc
Q psy18191 144 PRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVH--GKKDTDSGVYWCVARNELGF 215 (238)
Q Consensus 144 ~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~--~v~~~d~G~Y~C~a~N~~G~ 215 (238)
..|+.+.|.|.+.|. |. +.++|+++|..+..... .......+++......+. .....|.+.|+|.+.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999998 53 68999999998875321 122223456555443322 22334899999999997653
No 131
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.42 E-value=5.2e-06 Score=58.78 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=50.3
Q ss_pred CceEEeCCCcEEEEEEEeee----CCCEEEEEe---------------CCEEeecc--CCccEEEec----CCcEEEEEe
Q psy18191 139 ASAVVPRHEPTTLNCKADGY----PEPRIEWYK---------------DGSLVSAE--IGSHRILLP----AGSLFFLSL 193 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~g~----P~p~i~W~~---------------~g~~l~~~--~~~~~~~~~----~~~l~~~~v 193 (238)
..+.+..|+++.|.|..... +...+.|.. +|...... ....|..+. .+...+ .
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI--~ 83 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSI--V 83 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEE--E
Confidence 45678899999999998653 346899943 22222100 001122211 122222 2
Q ss_pred ecCCCCCCCeEEEEEEEeCCCce-eEEEEEEEE
Q psy18191 194 VHGKKDTDSGVYWCVARNELGFA-RSKNATLDV 225 (238)
Q Consensus 194 i~~v~~~d~G~Y~C~a~N~~G~~-~s~~~~L~V 225 (238)
|.+++.+|.|.|+|...|.-+.. ....+.|.|
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred EccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 67779999999999999976533 113555553
No 132
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.42 E-value=5.9e-06 Score=58.07 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=50.9
Q ss_pred CCCcEEEEEEEeeeC------------CCEEEEEeCC-----EEeecc--------CCccEEEe-------cCCcEEEEE
Q psy18191 145 RHEPTTLNCKADGYP------------EPRIEWYKDG-----SLVSAE--------IGSHRILL-------PAGSLFFLS 192 (238)
Q Consensus 145 ~G~~~~L~C~~~g~P------------~p~i~W~~~g-----~~l~~~--------~~~~~~~~-------~~~~l~~~~ 192 (238)
.|++++|.|...... .+.|.|+|.. ..+... .-..|..+ .+.+|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~--- 77 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLE--- 77 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEE---
Confidence 489999999986432 4689999842 111111 01113322 123444
Q ss_pred eecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227 (238)
Q Consensus 193 vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~ 227 (238)
|.+++.+|+|.|.|...+.+.... ..+.|.|.+
T Consensus 78 -I~nl~~sDsG~Y~C~V~~g~~~~~-~~v~l~v~g 110 (112)
T cd05900 78 -ITELRSNDSGTYRCEVMHGIEDNY-DTVEVQVKG 110 (112)
T ss_pred -EeecccccCEEEEEEEecCCCCce-eEEEEEEEe
Confidence 555699999999999998887775 688888865
No 133
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.39 E-value=3.3e-06 Score=58.80 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=49.1
Q ss_pred EeCCCceEEeCCCcEEEEEEEeeeC-CCEEEEEeCC-----EEeeccC------CccEEEecCCcEEEEEeecCCCCCCC
Q psy18191 135 TEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYKDG-----SLVSAEI------GSHRILLPAGSLFFLSLVHGKKDTDS 202 (238)
Q Consensus 135 ~~~~~~~~~~~G~~~~L~C~~~g~P-~p~i~W~~~g-----~~l~~~~------~~~~~~~~~~~l~~~~vi~~v~~~d~ 202 (238)
...|..+.+.+|+++.|.|.+.+.. ...+.|++.. ..+.... ...++......-...+.|..++.+|+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3456678899999999999987665 5779999742 1111100 01122211111112234788899999
Q ss_pred eEEEEEEEeC
Q psy18191 203 GVYWCVARNE 212 (238)
Q Consensus 203 G~Y~C~a~N~ 212 (238)
|.|.|.+.+.
T Consensus 84 g~Y~Ca~~~~ 93 (106)
T cd04980 84 AVYYCQQYGT 93 (106)
T ss_pred EEEEEEEeCC
Confidence 9999998764
No 134
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.38 E-value=4.7e-06 Score=55.23 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=41.4
Q ss_pred EEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEEe-cCCcEEEEEeec-CCCCCC-CeEEEEEEEeCCCce
Q psy18191 149 TTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFFLSLVH-GKKDTD-SGVYWCVARNELGFA 216 (238)
Q Consensus 149 ~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~l~~~~vi~-~v~~~d-~G~Y~C~a~N~~G~~ 216 (238)
+.|.|.+.| .|.+.+.|++++..+... ...... .++...+...+. .....| .+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGV--KLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCc--eeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999865 588999999999988632 111111 233333332221 123344 569999999987553
No 135
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.36 E-value=4.7e-06 Score=57.15 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=48.8
Q ss_pred eCCCceEEeCCCcEEEEEEEee-eCCCE--EEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe-EEEEEEEe
Q psy18191 136 EHPASAVVPRHEPTTLNCKADG-YPEPR--IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG-VYWCVARN 211 (238)
Q Consensus 136 ~~~~~~~~~~G~~~~L~C~~~g-~P~p~--i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G-~Y~C~a~N 211 (238)
..+.+..+.+|+.++|.|.+.| .|.+. |.||+++..+........ ............+ .+..+|.| .|+|.|.+
T Consensus 6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~-~~~~~~~~stlt~-~~~r~D~g~~~sC~A~l 83 (100)
T cd05755 6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN-TKSPVNAPATITI-TVDREDHGANFSCETEL 83 (100)
T ss_pred EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc-cCCCceeEEEEEE-ecchhhCCcEEEEEEEe
Confidence 3344555689999999999865 67776 799999998864210000 0000101111112 23667766 89999999
Q ss_pred CCCce
Q psy18191 212 ELGFA 216 (238)
Q Consensus 212 ~~G~~ 216 (238)
.++..
T Consensus 84 ~l~~~ 88 (100)
T cd05755 84 DLRPE 88 (100)
T ss_pred ccCcc
Confidence 88664
No 136
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.34 E-value=5.9e-06 Score=56.27 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=48.6
Q ss_pred CCEEEeCCCceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~ 210 (238)
+|.+...| ...+.+|++++|.|.... +.-.+.|+|+|...... .......+.......|..++.+|+|.|.|...
T Consensus 1 kP~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~---~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 1 KPFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL---HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce---ecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 35665544 566789999999998754 45679999998653311 00001112222233477889999999999975
No 137
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.33 E-value=7.2e-06 Score=54.48 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=42.1
Q ss_pred EEEEEEEeee-CCCEEEEEeCCEEeeccCCccEEEecC-CcEEEEEeec--CCCCCCCeEEEEEEEeCCCce
Q psy18191 149 TTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPA-GSLFFLSLVH--GKKDTDSGVYWCVARNELGFA 216 (238)
Q Consensus 149 ~~L~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~-~~l~~~~vi~--~v~~~d~G~Y~C~a~N~~G~~ 216 (238)
+.|.|.+.|. |.+.|+|+++|..+... ........+ ++..+...+. .....|...|+|.|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 6799998764 98999999999987642 111122223 3444333222 223445569999999987443
No 138
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.30 E-value=1.1e-05 Score=55.21 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=47.4
Q ss_pred CcEEEEEEEeeeC---CCEEEEEeCCEE----eec----------cCCccEEEecCCc-EEEEEeecCCCCCCCeEEEEE
Q psy18191 147 EPTTLNCKADGYP---EPRIEWYKDGSL----VSA----------EIGSHRILLPAGS-LFFLSLVHGKKDTDSGVYWCV 208 (238)
Q Consensus 147 ~~~~L~C~~~g~P---~p~i~W~~~g~~----l~~----------~~~~~~~~~~~~~-l~~~~vi~~v~~~d~G~Y~C~ 208 (238)
+++.|.|.....+ ...|.|+|.... +.. .....+..+.... -.....|..++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999986654 447999985421 100 0001122222110 111223777799999999999
Q ss_pred EEe-CCCceeEEEEEEEE
Q psy18191 209 ARN-ELGFARSKNATLDV 225 (238)
Q Consensus 209 a~N-~~G~~~s~~~~L~V 225 (238)
+.+ ..|... +.+.|.|
T Consensus 81 v~~~~~g~~~-~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQ-KVTTLTV 97 (98)
T ss_pred EEeCCCCcEE-EEEEEEe
Confidence 875 668876 5888877
No 139
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.28 E-value=5.1e-06 Score=57.52 Aligned_cols=73 Identities=25% Similarity=0.328 Sum_probs=47.4
Q ss_pred EEeCCCcEEEEEEEeee-CCCEEEEEeCCE-----Eeecc---------CCccEEEe--cCCcEEEEEeecCCCCCCCeE
Q psy18191 142 VVPRHEPTTLNCKADGY-PEPRIEWYKDGS-----LVSAE---------IGSHRILL--PAGSLFFLSLVHGKKDTDSGV 204 (238)
Q Consensus 142 ~~~~G~~~~L~C~~~g~-P~p~i~W~~~g~-----~l~~~---------~~~~~~~~--~~~~l~~~~vi~~v~~~d~G~ 204 (238)
.+.+|+++.|.|.+.+. +...+.|++... .+... ....++.. ....-.....|..++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 56789999999999876 677899998432 11100 01112221 111122233478889999999
Q ss_pred EEEEEEeCCC
Q psy18191 205 YWCVARNELG 214 (238)
Q Consensus 205 Y~C~a~N~~G 214 (238)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998775
No 140
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.27 E-value=1.2e-05 Score=56.42 Aligned_cols=80 Identities=29% Similarity=0.427 Sum_probs=51.3
Q ss_pred CCCcEEEEEEEeeeC----------CCEEEEEeC--CEEee---cc--------CCccEEEec-----CCcEEEEEeecC
Q psy18191 145 RHEPTTLNCKADGYP----------EPRIEWYKD--GSLVS---AE--------IGSHRILLP-----AGSLFFLSLVHG 196 (238)
Q Consensus 145 ~G~~~~L~C~~~g~P----------~p~i~W~~~--g~~l~---~~--------~~~~~~~~~-----~~~l~~~~vi~~ 196 (238)
.|+++.|.|.....+ ...+.|++. +..+. .. .-..|.... .+... ..|.+
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~as--L~I~~ 78 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDAS--LEISR 78 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEE--EEECC
Confidence 388999999986544 256999985 21111 00 011132221 12222 23777
Q ss_pred CCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191 197 KKDTDSGVYWCVARNELGFARSKNATLDVAG 227 (238)
Q Consensus 197 v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~ 227 (238)
++.+|+|.|.|......+..+ ..+.|.|.+
T Consensus 79 l~~sD~G~Y~C~v~~~~~~~~-~~v~l~V~g 108 (110)
T cd05878 79 LRSSDSGVYRCEVMHGIEDEQ-DTVPLEVTG 108 (110)
T ss_pred CChhhCEEEEEEEEeCCCcce-EEEEEEEEE
Confidence 899999999999998776666 588998875
No 141
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.26 E-value=1.6e-05 Score=54.64 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=26.6
Q ss_pred ecCCCCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 194 VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 194 i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
|..++.+|+|.|.|.+.|.-+..+ ..+.|.|
T Consensus 69 I~~v~~~D~G~Y~C~v~~~~~~~~-~~i~l~v 99 (100)
T cd05713 69 IHNVRASDEGLYTCFFQSDGFYEE-ATVELKV 99 (100)
T ss_pred EEcCChhhCEEEEEEEecCCcEEE-EEEEEEE
Confidence 677799999999999999888765 5888877
No 142
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.22 E-value=2e-05 Score=53.50 Aligned_cols=68 Identities=19% Similarity=0.378 Sum_probs=42.9
Q ss_pred CCcEEEEEEEeee-CCC-EEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191 146 HEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214 (238)
Q Consensus 146 G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G 214 (238)
++.+.|.|.+.|. |.+ .++|+++|..+..... .......+++......+ .+...+...|+|.+.+..-
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l-~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTL-EVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEE-EECCCCCCEEEEEEEeCCC
Confidence 7789999999996 443 7999999964332211 12222334554443322 2255678899999987654
No 143
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.22 E-value=1.9e-05 Score=55.97 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=49.2
Q ss_pred CCceEEeCCCcEEEEEEEeeeC----CCEEEEEeCCE------Eee-ccC-------C---ccEEEecCC--cEEEEEee
Q psy18191 138 PASAVVPRHEPTTLNCKADGYP----EPRIEWYKDGS------LVS-AEI-------G---SHRILLPAG--SLFFLSLV 194 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g~P----~p~i~W~~~g~------~l~-~~~-------~---~~~~~~~~~--~l~~~~vi 194 (238)
|..+.+.+|++++|.|...... ...+.|++... .+. ... . ..|..+... .-.....|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4567788999999999875432 25699986321 111 000 0 011111110 00112236
Q ss_pred cCCCCCCCeEEEEEEEeCCCcee-EEEEEEE
Q psy18191 195 HGKKDTDSGVYWCVARNELGFAR-SKNATLD 224 (238)
Q Consensus 195 ~~v~~~d~G~Y~C~a~N~~G~~~-s~~~~L~ 224 (238)
..++.+|+|.|.|.+.|.-+... +..+.|.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 67799999999999998765432 2245554
No 144
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.18 E-value=2.3e-05 Score=54.67 Aligned_cols=89 Identities=19% Similarity=0.325 Sum_probs=54.4
Q ss_pred CCCceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCE-----Eee-cc-----------CCccEE-EecCCcEEEEEeecCC
Q psy18191 137 HPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGS-----LVS-AE-----------IGSHRI-LLPAGSLFFLSLVHGK 197 (238)
Q Consensus 137 ~~~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~-----~l~-~~-----------~~~~~~-~~~~~~l~~~~vi~~v 197 (238)
.|..+.+.+|+++.|.|... ......+.|++... .+. .. ...+.. ............|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 35668889999999999988 55667899998321 111 00 001111 1111111122337788
Q ss_pred CCCCCeEEEEEEEeCCCceeEEEEEEEE
Q psy18191 198 KDTDSGVYWCVARNELGFARSKNATLDV 225 (238)
Q Consensus 198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V 225 (238)
+.+|+|.|.|.....-.......+.|.|
T Consensus 87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999999873333234666655
No 145
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.16 E-value=1.2e-05 Score=56.95 Aligned_cols=74 Identities=19% Similarity=0.400 Sum_probs=47.1
Q ss_pred CCceEEeCCCcEEEEEEEee--eCCCEEEEEeC--CEEe---e-cc----------CCccEEEe--cCCcEEEEEeecCC
Q psy18191 138 PASAVVPRHEPTTLNCKADG--YPEPRIEWYKD--GSLV---S-AE----------IGSHRILL--PAGSLFFLSLVHGK 197 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g--~P~p~i~W~~~--g~~l---~-~~----------~~~~~~~~--~~~~l~~~~vi~~v 197 (238)
|..+.+.+|++++|.|.+.+ .+.+.+.|++. +..+ . .. ....++.. ..++....+.|..+
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 55678899999999999877 67888999984 2111 0 00 00112221 12112223336777
Q ss_pred CCCCCeEEEEEEEe
Q psy18191 198 KDTDSGVYWCVARN 211 (238)
Q Consensus 198 ~~~d~G~Y~C~a~N 211 (238)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
No 146
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.16 E-value=2.6e-05 Score=55.16 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=49.5
Q ss_pred CCceEEeCCCcEEEEEEEeeeC----CCEEEEEeC----CEE--ee-ccC------C---ccEEEec----CCcEEEEEe
Q psy18191 138 PASAVVPRHEPTTLNCKADGYP----EPRIEWYKD----GSL--VS-AEI------G---SHRILLP----AGSLFFLSL 193 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g~P----~p~i~W~~~----g~~--l~-~~~------~---~~~~~~~----~~~l~~~~v 193 (238)
+..+.+.+|+++.|.|.....+ ...+.|++. +.. +. ... . ..+..+. .+... ..
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~s--L~ 82 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDAS--IL 82 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceE--EE
Confidence 4567889999999999975433 246999741 211 11 000 0 0121111 11222 23
Q ss_pred ecCCCCCCCeEEEEEEEeCCCce-eEEEEEEE
Q psy18191 194 VHGKKDTDSGVYWCVARNELGFA-RSKNATLD 224 (238)
Q Consensus 194 i~~v~~~d~G~Y~C~a~N~~G~~-~s~~~~L~ 224 (238)
|..++.+|+|.|.|.+.|.-+.. ....+.|.
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 83 IWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred EeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 67779999999999999976642 12355554
No 147
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.09 E-value=2.6e-05 Score=53.47 Aligned_cols=70 Identities=19% Similarity=0.328 Sum_probs=43.4
Q ss_pred EEeCCCcEEEEEEEeee--CCCEEEEEeCCE--E---eecc------CCccEEEe-cCCcEEEEEeecCCCCCCCeEEEE
Q psy18191 142 VVPRHEPTTLNCKADGY--PEPRIEWYKDGS--L---VSAE------IGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWC 207 (238)
Q Consensus 142 ~~~~G~~~~L~C~~~g~--P~p~i~W~~~g~--~---l~~~------~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C 207 (238)
.+.+|+++.|.|...+. ....+.|++... . +... ....++.. .++. ...+.|..++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~-~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGN-TASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCC-EEEEEECCCChhhCEEEEE
Confidence 46789999999998665 456799997421 1 1100 00112221 1222 2223478889999999999
Q ss_pred EEEeC
Q psy18191 208 VARNE 212 (238)
Q Consensus 208 ~a~N~ 212 (238)
.+.+.
T Consensus 81 ~~~~~ 85 (98)
T cd04984 81 QVWDS 85 (98)
T ss_pred EEccC
Confidence 98763
No 148
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.06 E-value=5.7e-05 Score=51.67 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=46.2
Q ss_pred CCcEEEEEEEeeeCC-CEEEEEeCCE----Eee-cc---------CCccEEEe-cCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191 146 HEPTTLNCKADGYPE-PRIEWYKDGS----LVS-AE---------IGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVA 209 (238)
Q Consensus 146 G~~~~L~C~~~g~P~-p~i~W~~~g~----~l~-~~---------~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C~a 209 (238)
|++++|.|....... -.+.|+|... .+. .. ....+... ..+.......|++++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998644332 3699998421 111 00 00111111 11111112236777999999999997
Q ss_pred Ee-CCCceeEEEEEEEEc
Q psy18191 210 RN-ELGFARSKNATLDVA 226 (238)
Q Consensus 210 ~N-~~G~~~s~~~~L~V~ 226 (238)
.+ +.|... ..+.|.|.
T Consensus 81 ~~~p~g~~~-~~~~L~v~ 97 (97)
T cd05846 81 NTFPDGSKS-GTMCLTVY 97 (97)
T ss_pred EeCCCCCee-eEEEEEEC
Confidence 74 557765 58888873
No 149
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.05 E-value=8.8e-05 Score=51.94 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=49.6
Q ss_pred CCcEEEEEEEeeeC-------CCEEEEEeC-----CEEee--c-cC--------CccEEEecC-----CcEEEEEeecCC
Q psy18191 146 HEPTTLNCKADGYP-------EPRIEWYKD-----GSLVS--A-EI--------GSHRILLPA-----GSLFFLSLVHGK 197 (238)
Q Consensus 146 G~~~~L~C~~~g~P-------~p~i~W~~~-----g~~l~--~-~~--------~~~~~~~~~-----~~l~~~~vi~~v 197 (238)
|+.+.|.|...-.| .+.|.|.+. ...+. . .. -..|..+.. +... ..|.++
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~as--L~i~nv 79 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNAS--LVLSRL 79 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEE--EEECCC
Confidence 78899999965322 478999874 11111 0 00 011222211 2222 237788
Q ss_pred CCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191 198 KDTDSGVYWCVARNELGFARSKNATLDVAG 227 (238)
Q Consensus 198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~ 227 (238)
+.+|+|.|.|.........+ ..+.|.|.+
T Consensus 80 ~~~D~G~Y~C~v~~g~~~~~-~~v~L~V~g 108 (110)
T cd05902 80 RYSDSGTYRCEVVLGINDEQ-DTVPLEVTG 108 (110)
T ss_pred CHHHCEEEEEEEEECCcccE-EEEEEEEEE
Confidence 99999999999999775565 588998865
No 150
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.04 E-value=2.8e-05 Score=52.18 Aligned_cols=71 Identities=27% Similarity=0.397 Sum_probs=42.4
Q ss_pred CCcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeec-CCCCC-CCeEEEEEEEeCCCce
Q psy18191 146 HEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH-GKKDT-DSGVYWCVARNELGFA 216 (238)
Q Consensus 146 G~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~-~v~~~-d~G~Y~C~a~N~~G~~ 216 (238)
|+.+.|.|.+ .|.|.|.|+|+.++..+............++.....+.|. .++.. +...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 7899999976 6789999999999987721101111222334333322221 22333 4568999999987543
No 151
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.03 E-value=6.9e-05 Score=56.55 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=57.0
Q ss_pred CceEEeCCCcEEEEEEEe-eeCCCEEEEEeCCEEeeccC---------CccEEEe-cCCcEEEEEeecCCCCCCCeEEEE
Q psy18191 139 ASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEI---------GSHRILL-PAGSLFFLSLVHGKKDTDSGVYWC 207 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~-g~P~p~i~W~~~g~~l~~~~---------~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C 207 (238)
..+.+.+|+++.|.|... +...+.+.|+|....+.... -..++.. ..+.......|+.++.+|+|.|.|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 357789999999999974 66678999998643222110 0113322 111111122267779999999999
Q ss_pred EEEe-CCCceeEEEEEEEEccCC
Q psy18191 208 VARN-ELGFARSKNATLDVAGKI 229 (238)
Q Consensus 208 ~a~N-~~G~~~s~~~~L~V~~~~ 229 (238)
...- +.|...+.++.|.|....
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEecCCCCCceeEEEEEEEchh
Confidence 8764 346233468888887654
No 152
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.02 E-value=4.2e-05 Score=50.76 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=39.7
Q ss_pred EEEEEEEee-eCCCEEEEEeCCEEeeccCCccEEE-ecCCcEEEEEeecC-CC-CCCCeEEEEEEEeCCCc
Q psy18191 149 TTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRIL-LPAGSLFFLSLVHG-KK-DTDSGVYWCVARNELGF 215 (238)
Q Consensus 149 ~~L~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~~vi~~-v~-~~d~G~Y~C~a~N~~G~ 215 (238)
+.|.|.+.| .|...++|+++|..+... ...... ..+++......+.- .+ ..+...|+|.+.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~-~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDV-KYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCc-eeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 679999976 678899999999987532 111111 12333333222221 13 33455899999987644
No 153
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.01 E-value=0.00011 Score=50.55 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=26.2
Q ss_pred ecCCCCCCCeEEEEEEEe-CCCceeEEEEEEEE
Q psy18191 194 VHGKKDTDSGVYWCVARN-ELGFARSKNATLDV 225 (238)
Q Consensus 194 i~~v~~~d~G~Y~C~a~N-~~G~~~s~~~~L~V 225 (238)
|++++.+|+|.|.|...+ +.|..+ ..+.|.|
T Consensus 68 I~nv~~sD~GtY~C~v~~~p~g~~~-~~~~L~V 99 (100)
T cd05888 68 LRNAVQADEGKYKCRVITFPAGNFE-AELVLTV 99 (100)
T ss_pred EecCccccceEEEEEEEeCCCCCee-eEEEEEe
Confidence 677799999999999998 667765 5888887
No 154
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.99 E-value=0.00018 Score=49.40 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=26.7
Q ss_pred ecCCCCCCCeEEEEEEEe-CCCceeEEEEEEEE
Q psy18191 194 VHGKKDTDSGVYWCVARN-ELGFARSKNATLDV 225 (238)
Q Consensus 194 i~~v~~~d~G~Y~C~a~N-~~G~~~s~~~~L~V 225 (238)
|++++.+|.|.|+|...| +.|..+ ..+.|.|
T Consensus 67 i~nl~~~D~G~Y~C~v~t~P~g~~~-~~~~L~V 98 (99)
T cd05886 67 LSRLELEDEGVYICEFATFPTGNRE-SQLNLTV 98 (99)
T ss_pred EcCCccccCEEEEEEEEeCCCCCeE-EEEEEEE
Confidence 667799999999999999 678775 5888887
No 155
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.95 E-value=7.1e-05 Score=52.18 Aligned_cols=70 Identities=21% Similarity=0.384 Sum_probs=42.0
Q ss_pred EEeCCCcEEEEEEEeeeC-CCEEEEEeCCEE---------eeccCC----------ccEEE--ecCCcEEEEEeecCCCC
Q psy18191 142 VVPRHEPTTLNCKADGYP-EPRIEWYKDGSL---------VSAEIG----------SHRIL--LPAGSLFFLSLVHGKKD 199 (238)
Q Consensus 142 ~~~~G~~~~L~C~~~g~P-~p~i~W~~~g~~---------l~~~~~----------~~~~~--~~~~~l~~~~vi~~v~~ 199 (238)
.+.+|++++|.|.+.+.. ...+.|++.... +..... ..+.. .........+.|..++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 578999999999986643 457999974221 100000 11111 11111122234788899
Q ss_pred CCCeEEEEEEEe
Q psy18191 200 TDSGVYWCVARN 211 (238)
Q Consensus 200 ~d~G~Y~C~a~N 211 (238)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999864
No 156
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.89 E-value=0.00022 Score=48.63 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=46.3
Q ss_pred CcEEEEEEEeee-CCCEEEEEeCC----EEeecc----------CCccEEEec-----CCcEEEEEeecCCCCCCCeEEE
Q psy18191 147 EPTTLNCKADGY-PEPRIEWYKDG----SLVSAE----------IGSHRILLP-----AGSLFFLSLVHGKKDTDSGVYW 206 (238)
Q Consensus 147 ~~~~L~C~~~g~-P~p~i~W~~~g----~~l~~~----------~~~~~~~~~-----~~~l~~~~vi~~v~~~d~G~Y~ 206 (238)
++++|.|..... ...+++|.|.. ..+... .-..+..+. +.+|. |++++.+|+|.|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~----i~nv~~~D~G~Y~ 76 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIM----LENVGFSDIGVYI 76 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEE----EeCCCccccEEEE
Confidence 368899997532 33579998742 122211 001122221 23343 6677999999999
Q ss_pred EEEE-eCCCceeEEEEEEEE
Q psy18191 207 CVAR-NELGFARSKNATLDV 225 (238)
Q Consensus 207 C~a~-N~~G~~~s~~~~L~V 225 (238)
|... .+.|+.+ .++.|.|
T Consensus 77 C~v~tfP~G~~~-~~~~l~~ 95 (96)
T cd05887 77 CKAVTFPLGNTQ-SSTTVTV 95 (96)
T ss_pred EEEEeCCCCCee-EEEEEEE
Confidence 9964 5778886 5888887
No 157
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.88 E-value=0.00024 Score=50.19 Aligned_cols=75 Identities=21% Similarity=0.300 Sum_probs=47.2
Q ss_pred eCCCceEEeCCCcEEEEEEEeee-CCCEEEEEeC--CEE---eecc------CCccEEEec---CCcEEEEEeecCCCCC
Q psy18191 136 EHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKD--GSL---VSAE------IGSHRILLP---AGSLFFLSLVHGKKDT 200 (238)
Q Consensus 136 ~~~~~~~~~~G~~~~L~C~~~g~-P~p~i~W~~~--g~~---l~~~------~~~~~~~~~---~~~l~~~~vi~~v~~~ 200 (238)
..|..+.+.+|+++.|.|..... ....+.|++. +.. +... ....++... ... ...+.|..++.+
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~-~~sL~I~~~~~~ 82 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQK-SISLTISALQLE 82 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCC-EEEEEECCCCHH
Confidence 34567889999999999997653 4567999983 211 1100 011233221 111 222337888999
Q ss_pred CCeEEEEEEEe
Q psy18191 201 DSGVYWCVARN 211 (238)
Q Consensus 201 d~G~Y~C~a~N 211 (238)
|+|.|.|...+
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999985
No 158
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.86 E-value=0.00011 Score=50.01 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=39.6
Q ss_pred CcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeec-CCCCCCCe-EEEEEEEeCCCc
Q psy18191 147 EPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVH-GKKDTDSG-VYWCVARNELGF 215 (238)
Q Consensus 147 ~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~-~v~~~d~G-~Y~C~a~N~~G~ 215 (238)
....+.|.+ .|.|.+.|+|+++..... ........+|.....+.+. ....+|.| .|+|.+.|..-.
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~---~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEA---ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcc---eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 456789997 689999999999721110 0111122345444433332 22556666 899999997733
No 159
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.86 E-value=0.00037 Score=49.14 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=28.9
Q ss_pred ecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191 194 VHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227 (238)
Q Consensus 194 i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~ 227 (238)
|..++.+|+|.|.|...+...... ..+.|.|.+
T Consensus 83 i~~v~~sD~G~Y~C~V~~g~~~~~-~~v~L~V~G 115 (117)
T cd05901 83 IVKLRASDAGVYRCEVMHGIEDTQ-DTVSLDVSG 115 (117)
T ss_pred EcccccccCEEEEEEEEECCcccE-EEEEEEEEE
Confidence 667799999999999999998886 699999875
No 160
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.83 E-value=0.00019 Score=49.04 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=44.3
Q ss_pred eEEeCCCcEEEEEEEee-eCCCEEEEEeCCE-----Eeec------cCCccEEEe-cCCcEEEEEeecCCCCCCCeEEEE
Q psy18191 141 AVVPRHEPTTLNCKADG-YPEPRIEWYKDGS-----LVSA------EIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWC 207 (238)
Q Consensus 141 ~~~~~G~~~~L~C~~~g-~P~p~i~W~~~g~-----~l~~------~~~~~~~~~-~~~~l~~~~vi~~v~~~d~G~Y~C 207 (238)
+.+.+|++++|.|.... .....+.|++... .+.. ...++.... ......+...|..++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 45788999999998754 3556799998531 1110 001112211 111112223378889999999999
Q ss_pred EEEeCC
Q psy18191 208 VARNEL 213 (238)
Q Consensus 208 ~a~N~~ 213 (238)
.+.+..
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 887654
No 161
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.82 E-value=0.00019 Score=50.35 Aligned_cols=72 Identities=21% Similarity=0.318 Sum_probs=44.0
Q ss_pred eEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCccEEEecC-CcEEEEEeec-CCCCCCCe-EEEEEEEeCC
Q psy18191 141 AVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSHRILLPA-GSLFFLSLVH-GKKDTDSG-VYWCVARNEL 213 (238)
Q Consensus 141 ~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~-~~l~~~~vi~-~v~~~d~G-~Y~C~a~N~~ 213 (238)
.....|+.++|.|.+.|. |. ..++|++||..+... ........+ ++..+...+. .....|.| .|+|.+....
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~-~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE-QPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc-ccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCC
Confidence 344578889999999875 53 479999999998642 111111123 2444333221 12444544 5999999865
No 162
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=97.77 E-value=5e-05 Score=50.16 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=34.9
Q ss_pred cCCCccEEEeccccccccce----------------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 60 FYPKPICLRFQDLLPQSKQG----------------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~g----------------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
..|.|.+.|||++.++.... ...|.+.++...|+|.|+|.+.|.+
T Consensus 9 G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~ 69 (81)
T cd04971 9 GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEY 69 (81)
T ss_pred eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCC
Confidence 46899999999998664332 1257888999999999998888853
No 163
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.75 E-value=0.00031 Score=47.59 Aligned_cols=67 Identities=22% Similarity=0.431 Sum_probs=44.5
Q ss_pred eCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191 144 PRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212 (238)
Q Consensus 144 ~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~ 212 (238)
..|+...|.|.|.|.-++ .++|++||..+. ... .......+++..+...+ .+...+...|+|.+.-.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l-~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKST-EFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEE-EECCCCCCeEEEEEEEC
Confidence 446777999999996444 579999999876 311 22233446666654433 22566777899999864
No 164
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=97.74 E-value=3.7e-05 Score=50.45 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=35.2
Q ss_pred ccCCCccEEEeccccccccce--------------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 59 GFYPKPICLRFQDLLPQSKQG--------------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 59 ~~~~~~~~~w~~~~~~~~~~g--------------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
...|.|++.||+++.++.... ..-|.+..+...|+|.|+|.+.|..
T Consensus 8 ~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~ 67 (79)
T cd05855 8 KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEY 67 (79)
T ss_pred eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCC
Confidence 357899999999998664322 1257788899999999998888753
No 165
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.72 E-value=0.00011 Score=50.53 Aligned_cols=82 Identities=24% Similarity=0.391 Sum_probs=48.9
Q ss_pred CEEEeC-CCceEEeCCCcEEEEEEEeee-C-CCEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCC--CCCeEE
Q psy18191 132 PRITEH-PASAVVPRHEPTTLNCKADGY-P-EPRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKD--TDSGVY 205 (238)
Q Consensus 132 P~i~~~-~~~~~~~~G~~~~L~C~~~g~-P-~p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~--~d~G~Y 205 (238)
|.+... |.......++.+.|.|.+.|. | .-.+.|++||..+..... .......+|+..+...+..... .+...|
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~ 81 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY 81 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 444433 333334467889999999885 4 346899999998853211 1112233666665554432221 235689
Q ss_pred EEEEEeCC
Q psy18191 206 WCVARNEL 213 (238)
Q Consensus 206 ~C~a~N~~ 213 (238)
+|.+....
T Consensus 82 sC~V~H~~ 89 (100)
T cd07699 82 TCEVTHEG 89 (100)
T ss_pred EEEEEecC
Confidence 99998754
No 166
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=97.69 E-value=2.8e-05 Score=49.34 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=35.8
Q ss_pred cCCCccEEEeccccccccc-eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 60 FYPKPICLRFQDLLPQSKQ-GLMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~-g~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
..|.|.+.|||++.++... ....|.+.++..+|+|.|+|.+.|.
T Consensus 9 g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~ 53 (67)
T cd05863 9 AYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNS 53 (67)
T ss_pred EeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEEC
Confidence 4678899999999877532 3457889999999999999888764
No 167
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.68 E-value=0.00011 Score=45.57 Aligned_cols=68 Identities=32% Similarity=0.453 Sum_probs=42.2
Q ss_pred EEEEEEEeeeCCCEEEEEeCCEEeeccCCc-cEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGS-HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA 216 (238)
Q Consensus 149 ~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~ 216 (238)
+.|.|.+.+.+.+.+.|++++......... ...............|..+...|.|.|.|.+.+..+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 69 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTV 69 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCcE
Confidence 368999988788899999988765432100 00000111111222256668899999999998876433
No 168
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.67 E-value=0.00054 Score=46.54 Aligned_cols=71 Identities=18% Similarity=0.372 Sum_probs=46.1
Q ss_pred eCCCcEEEEEEEeee-CCC-EEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191 144 PRHEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF 215 (238)
Q Consensus 144 ~~G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~ 215 (238)
..|+.+.|.|.+.|. |.. .++|++||..+.... ........+++..+...+.. ...+...|+|.+.-....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~-~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET-TPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE-cCCCCCEEEEEEEeCCCC
Confidence 357889999999986 443 689999999876431 12222234556665544432 445566899999875533
No 169
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.62 E-value=0.00083 Score=44.47 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=42.8
Q ss_pred ceEEeCCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191 140 SAVVPRHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212 (238)
Q Consensus 140 ~~~~~~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~ 212 (238)
+..+..|++++|.|.....+. +.++|+--+..... .......+|.+..+ ...|+|..+|...-.
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~~~~~~ktL~~~qv----~~qdSG~WtC~V~~~ 73 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----ILNQDKKTLNLVQL----GPNDSGTWDCIVSVN 73 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----eccCCccEEEecee----CcccCCEEEEEEEEC
Confidence 345678999999999865444 49999864433221 01122345555544 999999999999744
No 170
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.61 E-value=5.4e-05 Score=48.49 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=35.6
Q ss_pred cCCCccEEEeccccccccce----EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 60 FYPKPICLRFQDLLPQSKQG----LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~g----~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
..|.|.+.|||++.++.... ...|.+.++.++|+|.|+|.+.|..
T Consensus 9 G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~ 57 (70)
T cd05864 9 GYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPI 57 (70)
T ss_pred EeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECC
Confidence 46889999999998765432 1357888999999999999888754
No 171
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.61 E-value=0.00038 Score=47.35 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=39.7
Q ss_pred CcEEEEEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecC-CCCCCCe-EEEEEEEeCCCc
Q psy18191 147 EPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG-KKDTDSG-VYWCVARNELGF 215 (238)
Q Consensus 147 ~~~~L~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~-v~~~d~G-~Y~C~a~N~~G~ 215 (238)
..+.+.|.+ .|.|.+.|+|+++..... ........+++..+.+.+.. ...+|.| .|+|.+.|..-.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~---~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA---NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe---eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 357789986 588999999998732111 11112223455444333322 2555655 899999997633
No 172
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=97.60 E-value=0.0001 Score=47.87 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=34.4
Q ss_pred cCCCccEEEeccccccccc-----------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 60 FYPKPICLRFQDLLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
..|.|.+.|+|++.++... +...|.|.++.++|+|.|+|.+.|..
T Consensus 9 G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 64 (75)
T cd05893 9 GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEA 64 (75)
T ss_pred EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCC
Confidence 4678899999998754321 12358889999999999999888853
No 173
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.59 E-value=0.00064 Score=46.18 Aligned_cols=67 Identities=21% Similarity=0.358 Sum_probs=41.7
Q ss_pred CCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191 145 RHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212 (238)
Q Consensus 145 ~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~ 212 (238)
.++..+|.|.+.|.-+ -.++|++||..+..... .......+++..+...|. +...+...|+|.+.-.
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~-v~~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLN-FTPEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEE-EECCCCCeEEEEEEeC
Confidence 4566899999999644 35899999998754211 111223355555433332 2445566899998764
No 174
>KOG3515|consensus
Probab=97.58 E-value=0.0012 Score=60.09 Aligned_cols=147 Identities=15% Similarity=0.099 Sum_probs=82.2
Q ss_pred ccccCCCcccccCCCccEEEeccccccccce--E-E-EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCccee-cc
Q psy18191 49 ADLTQPPARGGFYPKPICLRFQDLLPQSKQG--L-M-YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLF-PG 123 (238)
Q Consensus 49 ~~~~~pp~~~~~~~~~~~~w~~~~~~~~~~g--~-~-~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~-~~ 123 (238)
+++.-|-...+.+|.+.++||.........+ + . -+.......+..+.|.|.+.++ ..... ..
T Consensus 23 ~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns-------------~~~~~~~~ 89 (741)
T KOG3515|consen 23 EDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNS-------------VGMPSRCP 89 (741)
T ss_pred CcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhccc-------------ccCceecc
Confidence 6666676677777788999999876333111 1 0 0011111222334445444432 11111 12
Q ss_pred eecCCccCCEEEeCCCceEEeCCCcEEEEEEE--eeeCCCEEEEEeCCEEeeccCCc-cEEE--------ecCCcEEEEE
Q psy18191 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKA--DGYPEPRIEWYKDGSLVSAEIGS-HRIL--------LPAGSLFFLS 192 (238)
Q Consensus 124 ~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~--~g~P~p~i~W~~~g~~l~~~~~~-~~~~--------~~~~~l~~~~ 192 (238)
....+..+|.-...........+..+.+.|.+ .+.|.+.+.|..++......... ..+. .....+.+..
T Consensus 90 ~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v 169 (741)
T KOG3515|consen 90 MILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTV 169 (741)
T ss_pred eeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEE
Confidence 33446666665544445566778889999954 56788999999887655432110 0000 1122233333
Q ss_pred eecCCCCCCCeEEEEEEEeC
Q psy18191 193 LVHGKKDTDSGVYWCVARNE 212 (238)
Q Consensus 193 vi~~v~~~d~G~Y~C~a~N~ 212 (238)
+ ...+.|.|+|.|.|.
T Consensus 170 ~----Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 170 S----RKADNGNYTCPANNR 185 (741)
T ss_pred E----EecCCceeEcccccc
Confidence 3 788899999999995
No 175
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=97.57 E-value=0.00012 Score=47.54 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=36.3
Q ss_pred cCCCccEEEeccccccccc--e---------EEEEEcCCCCCCCCCceEEEeCCCcccCCceE
Q psy18191 60 FYPKPICLRFQDLLPQSKQ--G---------LMYLVGSQASPDYPNRFSLCNNKTWQKGLPLK 111 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~--g---------~~~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c 111 (238)
..|.|.+.|+|++..+... . ...|.|.++..+|+|.|+|.+.|. .|.-.|
T Consensus 9 G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~--~G~~~~ 69 (75)
T cd05892 9 AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNE--AGVATC 69 (75)
T ss_pred ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcC--cCeEEE
Confidence 4688999999998765421 1 125788899999999999888874 454444
No 176
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.56 E-value=0.0013 Score=42.55 Aligned_cols=66 Identities=21% Similarity=0.474 Sum_probs=39.8
Q ss_pred cEEEEEEEeee-CC-CEEEEEeCCEEeeccCCc-cEEEecCCcEEEEEeec--CCCCCCCeEEEEEEEeCC
Q psy18191 148 PTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGS-HRILLPAGSLFFLSLVH--GKKDTDSGVYWCVARNEL 213 (238)
Q Consensus 148 ~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~-~~~~~~~~~l~~~~vi~--~v~~~d~G~Y~C~a~N~~ 213 (238)
.+.|.|.+.|. |. ..+.|+++|..+...... ......+|.......|. .....+...|+|.+....
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 36899999886 54 589999999875432111 11122456655544332 123345569999997653
No 177
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.54 E-value=0.00034 Score=48.49 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=42.0
Q ss_pred EEeCCCcEEEEEEEeeeCCCEEEEEeCCEE-------eecc-CC-----------ccEEEecCCcEEEEEeecCCCCCCC
Q psy18191 142 VVPRHEPTTLNCKADGYPEPRIEWYKDGSL-------VSAE-IG-----------SHRILLPAGSLFFLSLVHGKKDTDS 202 (238)
Q Consensus 142 ~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~-------l~~~-~~-----------~~~~~~~~~~l~~~~vi~~v~~~d~ 202 (238)
.+.+|++++|.|.........+.|++.... |... .. ..++......-...+.|..++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 357899999999986554567999984321 1100 00 1122211111222334788899999
Q ss_pred eEEEEEEEe
Q psy18191 203 GVYWCVARN 211 (238)
Q Consensus 203 G~Y~C~a~N 211 (238)
|.|.|...+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998753
No 178
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.51 E-value=0.00053 Score=46.75 Aligned_cols=69 Identities=9% Similarity=0.150 Sum_probs=39.9
Q ss_pred EEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCe-EEEEEEEe
Q psy18191 142 VVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSG-VYWCVARN 211 (238)
Q Consensus 142 ~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G-~Y~C~a~N 211 (238)
....+..++|.|.|.|.-++ .++|++||..+............+++..+...|. +...+.| .|+|.+.-
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~-vt~~~~~~~ysC~V~H 83 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLT-VTKDSLGKKFRCIYKH 83 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEE-ECchhCCCeEEEEEEE
Confidence 33446778999999996444 4799999988653211111122233444333332 2443334 59999986
No 179
>KOG3515|consensus
Probab=97.44 E-value=0.00015 Score=65.75 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=65.1
Q ss_pred CCEEEeCCCceEEeCCCcEEEEEEEeeeCC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEE
Q psy18191 131 VPRITEHPASAVVPRHEPTTLNCKADGYPE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209 (238)
Q Consensus 131 ~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a 209 (238)
.|.....+.+..+..|+++.|.|.+.++|+ +.+.|++.++.+. .++..+.+..+....+ .....+.|.|.|
T Consensus 7 ~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~c~a 78 (741)
T KOG3515|consen 7 VPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGD----VRDTVAELNCRA 78 (741)
T ss_pred CccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCCceeeecc----hhhhhhhhhhhh
Confidence 344444444457899999999999987765 6799999887665 3344455666765554 566678999999
Q ss_pred EeCCCceeEEEEEEEEccCC
Q psy18191 210 RNELGFARSKNATLDVAGKI 229 (238)
Q Consensus 210 ~N~~G~~~s~~~~L~V~~~~ 229 (238)
.|..|......+.+.|..++
T Consensus 79 ~ns~~~~~~~~~~l~v~~~p 98 (741)
T KOG3515|consen 79 FNSVGMPSRCPMILDVDYPP 98 (741)
T ss_pred cccccCceecceeeccccCc
Confidence 99988775567777776654
No 180
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.41 E-value=0.0016 Score=44.26 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=42.9
Q ss_pred CCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccC-CccEEEecCCcEEEEEeecCCC--CCCCeEEEEEEEeCCCce
Q psy18191 145 RHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEI-GSHRILLPAGSLFFLSLVHGKK--DTDSGVYWCVARNELGFA 216 (238)
Q Consensus 145 ~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~-~~~~~~~~~~~l~~~~vi~~v~--~~d~G~Y~C~a~N~~G~~ 216 (238)
..+.+.|.|.+.|. |. -.++|+++|..+.... ........+++..+...|.... ..+...|+|.+.......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 45668999999986 43 4689999998864321 1111223355555444332221 124568999998765443
No 181
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.38 E-value=0.00073 Score=46.66 Aligned_cols=71 Identities=21% Similarity=0.391 Sum_probs=42.5
Q ss_pred EEeCCCcEEEEEEEeeeCCC--EEEEEeCCEEeeccCC-c-cEEEe--cCCcEEEEEeecCCCC---CCCeEEEEEEEeC
Q psy18191 142 VVPRHEPTTLNCKADGYPEP--RIEWYKDGSLVSAEIG-S-HRILL--PAGSLFFLSLVHGKKD---TDSGVYWCVARNE 212 (238)
Q Consensus 142 ~~~~G~~~~L~C~~~g~P~p--~i~W~~~g~~l~~~~~-~-~~~~~--~~~~l~~~~vi~~v~~---~d~G~Y~C~a~N~ 212 (238)
.+..|+.++|.|.+.|..++ .++|+++|..+..... . ..... .+|+..+...+.. .. .+...|+|.+.-.
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v-~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTV-SAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEE-cHHHhcCCCcEEEEeEeC
Confidence 33457889999999996544 4799999988753210 0 11111 1366655444322 33 2345799998764
Q ss_pred C
Q psy18191 213 L 213 (238)
Q Consensus 213 ~ 213 (238)
.
T Consensus 91 ~ 91 (102)
T cd05768 91 A 91 (102)
T ss_pred C
Confidence 4
No 182
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=97.35 E-value=0.00034 Score=45.55 Aligned_cols=44 Identities=25% Similarity=0.371 Sum_probs=33.3
Q ss_pred CCCccEEEeccccccccce--------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQG--------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g--------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|+|++.++.... ..+|.+.++.++|+|.|.|.+.|..
T Consensus 10 ~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 61 (77)
T cd05760 10 HPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAF 61 (77)
T ss_pred cCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCC
Confidence 5678999999988654321 1367888899999999998887753
No 183
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=97.34 E-value=0.00052 Score=44.47 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=33.4
Q ss_pred cCCCccEEEeccccccccc-----------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 60 FYPKPICLRFQDLLPQSKQ-----------GLMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~-----------g~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
..|.|.+.|+|++..+... +...|.+.++..+|+|.|+|.+.|.
T Consensus 9 G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 63 (75)
T cd05744 9 AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNE 63 (75)
T ss_pred ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcC
Confidence 3677899999998755421 1235888899999999999888874
No 184
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=97.33 E-value=0.00026 Score=48.81 Aligned_cols=46 Identities=9% Similarity=0.005 Sum_probs=33.8
Q ss_pred ccCCCccEEEeccccccccce--------------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 59 GFYPKPICLRFQDLLPQSKQG--------------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 59 ~~~~~~~~~w~~~~~~~~~~g--------------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
++.|.|.+.|+|++.++.... ...|.+..+.++|+|.|+|.+.|.+
T Consensus 29 g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd04975 29 AYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSD 88 (101)
T ss_pred ecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence 336788999999998765321 1346677888888899988887753
No 185
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.33 E-value=0.0018 Score=45.87 Aligned_cols=75 Identities=17% Similarity=0.391 Sum_probs=45.1
Q ss_pred CCCceEEeCCCcEEEEEEEeeeC--CCEEEEEeCC--E-E--ee-cc----------CCccEEEe--cCCcEEEEEeecC
Q psy18191 137 HPASAVVPRHEPTTLNCKADGYP--EPRIEWYKDG--S-L--VS-AE----------IGSHRILL--PAGSLFFLSLVHG 196 (238)
Q Consensus 137 ~~~~~~~~~G~~~~L~C~~~g~P--~p~i~W~~~g--~-~--l~-~~----------~~~~~~~~--~~~~l~~~~vi~~ 196 (238)
.|....+.+|++++|.|...+.- ...+.|++.. . + |. .. ....++.. ....-.+.+.|..
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 35678889999999999875433 4569999732 1 1 10 00 00112211 1111112234788
Q ss_pred CCCCCCeEEEEEEEe
Q psy18191 197 KKDTDSGVYWCVARN 211 (238)
Q Consensus 197 v~~~d~G~Y~C~a~N 211 (238)
+..+|+|.|.|-+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 899999999998764
No 186
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=97.32 E-value=0.00045 Score=44.49 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=34.7
Q ss_pred cCCCccEEEeccccccccc---------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 60 FYPKPICLRFQDLLPQSKQ---------GLMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~---------g~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
..|.|.+.|++++..+... +...|.+.++.++|+|.|+|.+.|..
T Consensus 10 G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 63 (74)
T cd05748 10 GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPA 63 (74)
T ss_pred eeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCC
Confidence 4678899999998755321 13468888999999999999888853
No 187
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.31 E-value=0.0037 Score=42.59 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=39.5
Q ss_pred CcEEEEEEEee-eCCCEEEEEeCCE----Eeecc----------CCccEEEec-----CCcEEEEEeecCCCCCCCeEEE
Q psy18191 147 EPTTLNCKADG-YPEPRIEWYKDGS----LVSAE----------IGSHRILLP-----AGSLFFLSLVHGKKDTDSGVYW 206 (238)
Q Consensus 147 ~~~~L~C~~~g-~P~p~i~W~~~g~----~l~~~----------~~~~~~~~~-----~~~l~~~~vi~~v~~~d~G~Y~ 206 (238)
+.++|.|.... ....+++|.|... .+... .-..|..+. +.+|. |++++.+|+|.|+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~----i~nvt~~D~G~Y~ 76 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLS----FNNATEEDVGLYC 76 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEE----EcCCCcccCEEEE
Confidence 46789998642 2456788987421 22110 001222222 23333 6777999999999
Q ss_pred EEEEeC-CCcee
Q psy18191 207 CVARNE-LGFAR 217 (238)
Q Consensus 207 C~a~N~-~G~~~ 217 (238)
|..... .|..+
T Consensus 77 C~~~t~P~g~~~ 88 (96)
T cd05889 77 CSLVTYPQGSWE 88 (96)
T ss_pred EEEEeCCCCCeE
Confidence 999764 56664
No 188
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.30 E-value=0.0025 Score=45.24 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=43.7
Q ss_pred CCceEEeCCCcEEEEEEEeeeC------CCEEEEEeCCE-----E-ee-cc-------CCccEEEe--cCCcEEEEEeec
Q psy18191 138 PASAVVPRHEPTTLNCKADGYP------EPRIEWYKDGS-----L-VS-AE-------IGSHRILL--PAGSLFFLSLVH 195 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g~P------~p~i~W~~~g~-----~-l~-~~-------~~~~~~~~--~~~~l~~~~vi~ 195 (238)
|..+.+.+|+.++|.|.....+ ...+.|++... . +. .. ....+... ....-...+.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 5667889999999999864221 24589998531 1 11 00 00112222 111111222377
Q ss_pred CCCCCCCeEEEEEEEeC
Q psy18191 196 GKKDTDSGVYWCVARNE 212 (238)
Q Consensus 196 ~v~~~d~G~Y~C~a~N~ 212 (238)
.++.+|+|.|.|.....
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 88999999999987653
No 189
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=97.29 E-value=0.00028 Score=44.85 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=33.8
Q ss_pred CCCccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++.++...+ ..+|.+.++..+|+|.|+|.+.|.+
T Consensus 10 ~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 59 (69)
T cd05746 10 DPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTI 59 (69)
T ss_pred eCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCC
Confidence 5678899999987654322 2368888999999999998888754
No 190
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.28 E-value=0.002 Score=45.45 Aligned_cols=85 Identities=20% Similarity=0.395 Sum_probs=48.4
Q ss_pred CCEEEeC-CCceEEeCCCcEEEEEEEeee-CC-CEEEEEeCCEEeeccCCcc-EEEec-CCcEEEEEeecCCCCC---C-
Q psy18191 131 VPRITEH-PASAVVPRHEPTTLNCKADGY-PE-PRIEWYKDGSLVSAEIGSH-RILLP-AGSLFFLSLVHGKKDT---D- 201 (238)
Q Consensus 131 ~P~i~~~-~~~~~~~~G~~~~L~C~~~g~-P~-p~i~W~~~g~~l~~~~~~~-~~~~~-~~~l~~~~vi~~v~~~---d- 201 (238)
+|.+... |....+..++.+.|.|.+.|. |. -.++|++||..+....... ..... +++......|.. ... +
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v-~~~~w~~~ 80 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRV-SATEWFNP 80 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEE-ChHHhccC
Confidence 3444433 333344456789999999986 44 3789999998876431111 11122 245544433322 332 3
Q ss_pred CeEEEEEEEeCCCce
Q psy18191 202 SGVYWCVARNELGFA 216 (238)
Q Consensus 202 ~G~Y~C~a~N~~G~~ 216 (238)
...|+|.+.-.....
T Consensus 81 ~~~ytC~V~H~g~~~ 95 (115)
T cd05769 81 RNTFTCIVQFYGGTD 95 (115)
T ss_pred CCeEEEEEEEeCCcc
Confidence 458999998765444
No 191
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=97.26 E-value=0.00027 Score=45.28 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=33.7
Q ss_pred cCCCccEEEeccccccccce-----EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 60 FYPKPICLRFQDLLPQSKQG-----LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
..|.|.+.|+|++.++.... ...|.+.++.++|+|.|+|.+.|.
T Consensus 9 g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~ 57 (71)
T cd04976 9 AYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNK 57 (71)
T ss_pred EeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcC
Confidence 35778999999988664322 235778899999999999888774
No 192
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.24 E-value=0.00049 Score=42.84 Aligned_cols=51 Identities=25% Similarity=0.465 Sum_probs=33.3
Q ss_pred eCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191 144 PRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211 (238)
Q Consensus 144 ~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N 211 (238)
..|.+|+|.|...+. .+.|.+++..+..+ +..+.+... . +++|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~---------~~~~~~~~~----~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS---------DEKYLSLNH----F-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC---------CceEEeecc----C-CCCceEEEEeCC
Confidence 468999999965422 29999998554421 122222222 4 789999999964
No 193
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.23 E-value=0.0002 Score=46.06 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=33.3
Q ss_pred cCCCccEEEeccccccccc-e-----EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 60 FYPKPICLRFQDLLPQSKQ-G-----LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~-g-----~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
..|.|++.|+|++.++... . -..|.+.++..+|+|.|+|.+.+.
T Consensus 9 g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 9 AFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred EcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEcc
Confidence 4678899999999865432 1 125778899999999999877763
No 194
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.22 E-value=0.0018 Score=42.70 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=45.4
Q ss_pred CCCcEEEEEEEeee-CCC-EEEEEeCCEEeeccCCccEEE-ecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCc
Q psy18191 145 RHEPTTLNCKADGY-PEP-RIEWYKDGSLVSAEIGSHRIL-LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF 215 (238)
Q Consensus 145 ~G~~~~L~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~~~-~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~ 215 (238)
.++.+.|.|.+.|. |.. .|.|+++|..+.......... ..+|+..+...+.. ...+...|+|.+......
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v-~~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTV-TWNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEE-ETTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEe-cCCCCCEEEEEEEECCCC
Confidence 37889999999886 444 599999999876431111122 35666655544322 355556899999876543
No 195
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=97.18 E-value=0.00094 Score=44.52 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=35.0
Q ss_pred cCCCccEEEeccccccccc--e--------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 60 FYPKPICLRFQDLLPQSKQ--G--------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~--g--------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
..|.|.+.|++++.++... . ...|.+.++.++|+|.|+|.+.|.
T Consensus 21 G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~ 74 (86)
T cd05894 21 GEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNP 74 (86)
T ss_pred ecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeC
Confidence 3678899999998866432 1 257889999999999999988874
No 196
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=97.17 E-value=0.0003 Score=48.47 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=32.5
Q ss_pred cCCCccEEEeccccccccce---------------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 60 FYPKPICLRFQDLLPQSKQG---------------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~g---------------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
..|.|.+.|+|++.++.... ...|.+..+..+|+|.|+|.+.|.
T Consensus 29 g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd05859 29 AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNE 87 (101)
T ss_pred EeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence 46788999999998765332 124677788888888888877774
No 197
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.15 E-value=0.0014 Score=44.69 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=43.2
Q ss_pred eEEeCCCcEEEEEEEeee--CC-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC--CC-eEEEEEEEeCC
Q psy18191 141 AVVPRHEPTTLNCKADGY--PE-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT--DS-GVYWCVARNEL 213 (238)
Q Consensus 141 ~~~~~G~~~~L~C~~~g~--P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~--d~-G~Y~C~a~N~~ 213 (238)
..+..|+.+.|.|.+.|. |. -.++|++++...............+|+..+...+.. ..+ +. -.|+|.+.-..
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v-~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNV-STDDWISGDTFQCKVTHPD 86 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEe-CHHHccCCCcEEEEEECCC
Confidence 345568999999999998 43 358999987433211111222344666666554322 232 23 37999998754
No 198
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.11 E-value=0.0033 Score=42.79 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=45.1
Q ss_pred eEEeCCCcEEE-EEEE-eeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCC-CCCCCe-EEEEEEEeCCC
Q psy18191 141 AVVPRHEPTTL-NCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK-KDTDSG-VYWCVARNELG 214 (238)
Q Consensus 141 ~~~~~G~~~~L-~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v-~~~d~G-~Y~C~a~N~~G 214 (238)
..+.+|+.+.+ .|.+ .|.|.++|+|+.+..... ........+|+.+....++.. .++|.| .++|.+....-
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 45678888888 8985 788999999998743221 111122345666555443322 445555 89999998753
No 199
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=97.09 E-value=0.00098 Score=45.62 Aligned_cols=45 Identities=7% Similarity=-0.048 Sum_probs=34.6
Q ss_pred CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcc
Q psy18191 61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQ 105 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~ 105 (238)
.|.+++.|+|++.++.... ...|.+.++...|+|.|+|.+.|.+.
T Consensus 27 ~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 27 TQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred cCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 5678899999998664321 34678889999999999998888533
No 200
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.03 E-value=0.0037 Score=42.51 Aligned_cols=67 Identities=15% Similarity=0.330 Sum_probs=40.1
Q ss_pred CCCcEEEEEEEeeeCC--CEEEEEeCCEEeeccCC-ccEEEecCCcEEEEEeecCCCCCC---CeEEEEEEEeCC
Q psy18191 145 RHEPTTLNCKADGYPE--PRIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSLVHGKKDTD---SGVYWCVARNEL 213 (238)
Q Consensus 145 ~G~~~~L~C~~~g~P~--p~i~W~~~g~~l~~~~~-~~~~~~~~~~l~~~~vi~~v~~~d---~G~Y~C~a~N~~ 213 (238)
.++.+.|.|.+.|.-+ -.++|++||.. ..... .......+|+......|. +...| ...|+|.+.-..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~-v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLT-VPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEE-EeHHHcCCCCcEEEEEEeCC
Confidence 4667999999999644 35799999987 32100 111222256555443332 24443 457999988654
No 201
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=97.02 E-value=0.00088 Score=43.04 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=32.9
Q ss_pred CCCccEEEeccccccccce------------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQG------------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g------------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++.++.... ...|.+..+.++|+|.|+|.+.|..
T Consensus 11 ~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 66 (75)
T cd05750 11 YPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENIL 66 (75)
T ss_pred CCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcC
Confidence 5678999999987554321 2357788899999999998887753
No 202
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.02 E-value=0.0012 Score=41.44 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=32.1
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N 211 (238)
.+.+.|.|.+ .-.|.|++ |..+... ...++.+. .....-.|.|.|.+.|
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~--------~~~tlnLG----s~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV--------SNTLLDLG----SRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc--------cccEEecc----CcccCCCcceEecCcc
Confidence 4578999976 24599999 6555421 12333333 3366779999999988
No 203
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=96.98 E-value=0.00082 Score=43.33 Aligned_cols=45 Identities=9% Similarity=-0.060 Sum_probs=33.0
Q ss_pred CCCccEEEeccccccccce-E-----EEEEcCCCCCCCCCceEEEeCCCcc
Q psy18191 61 YPKPICLRFQDLLPQSKQG-L-----MYLVGSQASPDYPNRFSLCNNKTWQ 105 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g-~-----~~l~~~~~~~~~~g~y~~~~~~~~~ 105 (238)
.|.|++.|+|++..+...+ + ..|.+.++..+|.|.|+|.+.|...
T Consensus 13 ~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G 63 (73)
T cd05852 13 APKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRG 63 (73)
T ss_pred eCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCC
Confidence 5678999999887443221 1 3677888999999999988887543
No 204
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=96.95 E-value=0.00065 Score=43.78 Aligned_cols=45 Identities=13% Similarity=-0.009 Sum_probs=33.0
Q ss_pred cCCCccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 60 FYPKPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
..|.|.+.|++++.++.... ...|.+.++..+|.|.|+|.+.|..
T Consensus 13 g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 63 (74)
T cd05745 13 GYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIV 63 (74)
T ss_pred EecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCC
Confidence 46788999999987543321 1357788888899999998887753
No 205
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.93 E-value=0.0051 Score=39.82 Aligned_cols=61 Identities=20% Similarity=0.394 Sum_probs=33.9
Q ss_pred cEEEEEEEeeeCCC--EEEEEeCCE-----Eeecc----------CCccEEEe-cCC-cEEEEEeecCCCCCCCeEEEEE
Q psy18191 148 PTTLNCKADGYPEP--RIEWYKDGS-----LVSAE----------IGSHRILL-PAG-SLFFLSLVHGKKDTDSGVYWCV 208 (238)
Q Consensus 148 ~~~L~C~~~g~P~p--~i~W~~~g~-----~l~~~----------~~~~~~~~-~~~-~l~~~~vi~~v~~~d~G~Y~C~ 208 (238)
++.|.|.......+ .+.|++... .+... ....++.. ... .......|..++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899988665543 789987431 11110 01112221 110 1122233788899999999995
No 206
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=96.93 E-value=0.0016 Score=43.94 Aligned_cols=44 Identities=9% Similarity=0.134 Sum_probs=33.3
Q ss_pred CCCccEEEeccccccccc----------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQ----------GLMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~----------g~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++.++... +...|.+.++..+|+|.|+|.+.|..
T Consensus 28 ~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (92)
T cd05737 28 DPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKY 81 (92)
T ss_pred cCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECC
Confidence 567889999998755321 12357888999999999999888743
No 207
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=96.92 E-value=0.0013 Score=42.55 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=32.4
Q ss_pred CCCccEEEeccccccccce--------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSKQG--------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g--------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|.+.|++++.++.... ...|.+.++.++|+|.|+|.+.|.
T Consensus 13 ~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 63 (76)
T cd05867 13 IPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNR 63 (76)
T ss_pred eCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECC
Confidence 4678999999987553311 135778889999999999888774
No 208
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=96.88 E-value=0.0012 Score=42.25 Aligned_cols=45 Identities=11% Similarity=-0.108 Sum_probs=33.0
Q ss_pred cCCCccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 60 FYPKPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
..|.|.+.|++++.+..... ...|.+.++.++|+|.|+|.+.|..
T Consensus 9 G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 59 (71)
T cd05876 9 GLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSE 59 (71)
T ss_pred EecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCC
Confidence 36788999999876443221 2367788888999999998887753
No 209
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=96.87 E-value=0.0013 Score=44.50 Aligned_cols=43 Identities=9% Similarity=-0.002 Sum_probs=32.7
Q ss_pred CCccEEEeccccccccceE-----EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 62 PKPICLRFQDLLPQSKQGL-----MYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 62 ~~~~~~w~~~~~~~~~~g~-----~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
+.|.+.|||++.++..... ..|.+.++..+|+|.|+|.+.+..
T Consensus 28 ~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~ 75 (92)
T cd05757 28 TLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTH 75 (92)
T ss_pred CCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecC
Confidence 6789999999986654321 356778899999999998877653
No 210
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=96.86 E-value=0.0022 Score=42.61 Aligned_cols=44 Identities=7% Similarity=-0.115 Sum_probs=30.8
Q ss_pred CCccEEEeccccccc--cceEE-----------EEEcCCCCCCCCCceEEEeCCCcc
Q psy18191 62 PKPICLRFQDLLPQS--KQGLM-----------YLVGSQASPDYPNRFSLCNNKTWQ 105 (238)
Q Consensus 62 ~~~~~~w~~~~~~~~--~~g~~-----------~l~~~~~~~~~~g~y~~~~~~~~~ 105 (238)
+.+++.|++++.++. ..+.+ .|+|.+++..|+|+|+|.+.+...
T Consensus 15 l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~ 71 (85)
T cd05853 15 LDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVD 71 (85)
T ss_pred CCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccC
Confidence 456799999998664 22211 477778888888888877776543
No 211
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=96.86 E-value=0.00056 Score=46.52 Aligned_cols=43 Identities=16% Similarity=0.058 Sum_probs=32.3
Q ss_pred CCCccEEEeccccccccc--------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSKQ--------GLMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~--------g~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
...+.+.|||++.++... +...|.+.++.++|+|.|+|.+.+.
T Consensus 27 ~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 27 RTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred CCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEe
Confidence 356799999999866432 2236788899999999999876654
No 212
>KOG1480|consensus
Probab=96.85 E-value=0.00036 Score=62.79 Aligned_cols=86 Identities=26% Similarity=0.476 Sum_probs=64.3
Q ss_pred EEeCCCceEEeCCCcEEEEEE-EeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeC
Q psy18191 134 ITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212 (238)
Q Consensus 134 i~~~~~~~~~~~G~~~~L~C~-~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~ 212 (238)
+...|....+.++..+.|.|. ..+.|...+.|++++..+.. ....+......+.+ ..+...|.|+|+|.|.|.
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~~d~~li~----~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRASDHNLII----SQARLSDSGNYTCEATNI 205 (909)
T ss_pred hccChhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhhhcCCccc----cchhhhhcccceeeeehh
Confidence 444566677888999999998 47999999999999987775 23333344566654 444899999999999999
Q ss_pred CCceeEEEEEEEE
Q psy18191 213 LGFARSKNATLDV 225 (238)
Q Consensus 213 ~G~~~s~~~~L~V 225 (238)
++...+.++.+.|
T Consensus 206 ~~~r~~~~~~v~v 218 (909)
T KOG1480|consen 206 VAKRKSDPATVQV 218 (909)
T ss_pred hccccccceEEEE
Confidence 9987655554443
No 213
>PHA03376 BARF1; Provisional
Probab=96.84 E-value=0.014 Score=44.33 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=44.3
Q ss_pred ceEEeCCCcEEEEEEEe---eeCCCEEEEEeCC----EEeeccC----------CccEEEe--cCCcEEEEEeecCCCCC
Q psy18191 140 SAVVPRHEPTTLNCKAD---GYPEPRIEWYKDG----SLVSAEI----------GSHRILL--PAGSLFFLSLVHGKKDT 200 (238)
Q Consensus 140 ~~~~~~G~~~~L~C~~~---g~P~p~i~W~~~g----~~l~~~~----------~~~~~~~--~~~~l~~~~vi~~v~~~ 200 (238)
.+.+..|+++.|.|.-. ..+.-.|+|+|.+ ..+..-. ...+..+ +.|++.+ +|..++.+
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsL--vI~~l~lS 97 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFL--VVTAANIS 97 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEE--EEEeeeec
Confidence 46678899999999743 2245679999942 2221110 0111111 2344433 36777999
Q ss_pred CCeEEEEEEEeCC
Q psy18191 201 DSGVYWCVARNEL 213 (238)
Q Consensus 201 d~G~Y~C~a~N~~ 213 (238)
|.|.|+|..+-..
T Consensus 98 DdGtY~C~fQkge 110 (221)
T PHA03376 98 HDGNYLCRMKLGE 110 (221)
T ss_pred CCceEEEEEEcCC
Confidence 9999999998654
No 214
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=96.84 E-value=0.0021 Score=42.46 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=32.1
Q ss_pred CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.||+++..+.... ...|.+..+.++|+|.|+|.+.|..
T Consensus 21 ~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~ 74 (85)
T cd05857 21 NPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEY 74 (85)
T ss_pred CCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCC
Confidence 4677899999987554321 1246777888999999998887753
No 215
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=96.80 E-value=0.0021 Score=41.02 Aligned_cols=44 Identities=7% Similarity=-0.097 Sum_probs=30.5
Q ss_pred CCCccEEEeccccccccce-E-----EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQG-L-----MYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g-~-----~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++..+.... . ..+.+.++.++|+|.|+|.+.|..
T Consensus 11 ~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~ 60 (71)
T cd05723 11 KPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDV 60 (71)
T ss_pred eCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCC
Confidence 5788999999987543322 1 134455778888888888877743
No 216
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=96.80 E-value=0.0017 Score=41.80 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=31.2
Q ss_pred CCCccEEEecccccccc--ce------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSK--QG------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~--~g------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|.+.||+++.++.. .+ ...|.+.++..+|+|.|+|.+.|.
T Consensus 10 ~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~ 60 (74)
T cd05738 10 NPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNS 60 (74)
T ss_pred ecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECC
Confidence 57889999999875542 11 125677788888999999877764
No 217
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=96.77 E-value=0.0024 Score=42.73 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=33.0
Q ss_pred cCCCccEEEeccccccccce-E----EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 60 FYPKPICLRFQDLLPQSKQG-L----MYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~g-~----~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
..|.|.+.|++++.++.... + ..|.+.++.++|+|.|+|.+.|..
T Consensus 27 G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 27 GNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred ccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCC
Confidence 35778999999887543321 1 257788889999999998888753
No 218
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=96.76 E-value=0.0029 Score=40.88 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=31.9
Q ss_pred CCCccEEEeccccccccc-------------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQ-------------GLMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~-------------g~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.+.+.||+++.++... ....|.|..+.+.|+|.|+|.+.+..
T Consensus 11 ~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~ 67 (76)
T cd05895 11 YPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKL 67 (76)
T ss_pred CCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCC
Confidence 456789999998755321 12457788888999999998877743
No 219
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=96.76 E-value=0.0025 Score=41.63 Aligned_cols=41 Identities=7% Similarity=-0.042 Sum_probs=31.0
Q ss_pred CccEEEeccccccccce-E----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191 63 KPICLRFQDLLPQSKQG-L----MYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 63 ~~~~~w~~~~~~~~~~g-~----~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.+.+.|+|++.++.... . ..|.|..+.++|+|.|+|.+.+.
T Consensus 22 ~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~ 67 (79)
T cd04973 22 VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSP 67 (79)
T ss_pred CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCC
Confidence 34799999998765432 1 25778899999999999888764
No 220
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=96.74 E-value=0.0016 Score=41.36 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=32.3
Q ss_pred CCCccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++.++.... ...|.+.++..+|+|.|+|.+.|..
T Consensus 10 ~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 59 (71)
T cd05731 10 LPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSL 59 (71)
T ss_pred ecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCC
Confidence 5678899999876543321 1367788888999999998887753
No 221
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=96.73 E-value=0.0019 Score=40.83 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=31.7
Q ss_pred CCCccEEEeccccccccce-----EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSKQG-----LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|.+.|++++....... ...|.+.++.++|+|.|+|.+.|.
T Consensus 10 ~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 57 (69)
T cd05725 10 DPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENM 57 (69)
T ss_pred CCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcC
Confidence 5677899999875443221 235788889999999999888774
No 222
>PHA03376 BARF1; Provisional
Probab=96.67 E-value=0.0074 Score=45.78 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=40.0
Q ss_pred CCcEEEEEEEeeeCCCEEEEEeCCEE-eecc-CCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce
Q psy18191 146 HEPTTLNCKADGYPEPRIEWYKDGSL-VSAE-IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA 216 (238)
Q Consensus 146 G~~~~L~C~~~g~P~p~i~W~~~g~~-l~~~-~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~ 216 (238)
-+..++.|.+.|.|.|.++|+.+... .... ..+......+|+|...--+..-++ -.-..+|...|...+.
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 210 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKP-WHLPVTCVGKNDKEEA 210 (221)
T ss_pred CCeeEEEEecCCcCCchheeccccCCCCCCccccCceeecCCCcEEEEEEeecCCC-ccCceEEeccCchhhh
Confidence 56678899999999999999975321 1111 112233344566654322211122 2335789988876555
No 223
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=96.65 E-value=0.0028 Score=46.26 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=31.4
Q ss_pred ecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCCC
Q psy18191 194 VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231 (238)
Q Consensus 194 i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~~ 231 (238)
|..++.+|+|.|.|.+.|..|... ..++|.|..+|..
T Consensus 5 i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~l~v~~~P~v 41 (139)
T cd05771 5 LPGLTVHDEGTYICSVSTPPHQAQ-QIIQLSVSEPPRV 41 (139)
T ss_pred ECCCCHHHCEEEEEEEEccCccee-eEEEEEEecCCce
Confidence 667799999999999999988886 6899999876644
No 224
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=96.65 E-value=0.0019 Score=41.90 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=31.2
Q ss_pred CCCccEEEeccccccccc---e-----EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSKQ---G-----LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~---g-----~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|++.|++++.++... . -..+.+..+.+.|+|.|+|.+.|.
T Consensus 13 ~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~ 63 (76)
T cd05868 13 NPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNE 63 (76)
T ss_pred eCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcC
Confidence 578899999998865321 1 124667788888899999887774
No 225
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=96.61 E-value=0.0053 Score=41.29 Aligned_cols=45 Identities=7% Similarity=-0.058 Sum_probs=33.3
Q ss_pred cCCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 60 FYPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
..|.|.+.|++++..+.... ...|.+.++..+|+|.|+|.+.|..
T Consensus 29 g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 82 (92)
T cd05747 29 GEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE 82 (92)
T ss_pred ecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence 45678899999987543221 1357788999999999999888753
No 226
>PHA02633 hypothetical protein; Provisional
Probab=96.60 E-value=0.0076 Score=36.95 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=31.2
Q ss_pred CCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230 (238)
Q Consensus 185 ~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~ 230 (238)
++.|-++.. ..+|+|.|.|...|.--... .++.|.|....+
T Consensus 17 ~~nLwilpa----~~sDSGiYiC~~rn~t~c~~-~si~l~V~~~~~ 57 (63)
T PHA02633 17 CNNMLILNP----TQSDSGIYMCITKNETYSDM-MKFDLCICLRIE 57 (63)
T ss_pred cccEEEecc----ccccCcEEEEEEcCCCeeEE-EEEEEEEeeccc
Confidence 445554444 89999999999999877776 488899876653
No 227
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=96.60 E-value=0.0029 Score=41.20 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=32.5
Q ss_pred CCCccEEEeccccccccc---------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQ---------GLMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~---------g~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++..+... +...|.+.++..+|.|.|+|.+.|.+
T Consensus 13 ~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 65 (78)
T cd05743 13 VPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTR 65 (78)
T ss_pred ecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecC
Confidence 567899999987644321 13578888999999999998877743
No 228
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=96.59 E-value=0.004 Score=41.71 Aligned_cols=45 Identities=11% Similarity=-0.002 Sum_probs=34.3
Q ss_pred CCCccEEEeccccccccce---------EEEEEcCCCCCCCCCceEEEeCCCcc
Q psy18191 61 YPKPICLRFQDLLPQSKQG---------LMYLVGSQASPDYPNRFSLCNNKTWQ 105 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g---------~~~l~~~~~~~~~~g~y~~~~~~~~~ 105 (238)
.|.|.+.|++++..+...+ ...|.+.++...|.|.|+|.+.|.+.
T Consensus 27 ~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G 80 (90)
T cd04972 27 SPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVG 80 (90)
T ss_pred cCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCC
Confidence 6788999999987443211 24788889999999999998887543
No 229
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.55 E-value=0.0029 Score=41.91 Aligned_cols=39 Identities=10% Similarity=-0.000 Sum_probs=25.9
Q ss_pred cEEEeccccccccc--e-----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 65 ICLRFQDLLPQSKQ--G-----------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 65 ~~~w~~~~~~~~~~--g-----------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.+.|++++.++... + ...|.|.++...|+|.|+|.+.+.
T Consensus 18 ~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 69 (85)
T cd04970 18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTV 69 (85)
T ss_pred EEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecC
Confidence 67999998754321 1 124677777778888888776663
No 230
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=96.55 E-value=0.0036 Score=40.77 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=32.8
Q ss_pred CCCccEEEeccccccccc-------eEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQ-------GLMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~-------g~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++..+... +...|.+.++.++|+|.|+|.+.+..
T Consensus 21 ~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 71 (82)
T cd05856 21 NPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRA 71 (82)
T ss_pred eCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCC
Confidence 456789999998754321 12467888999999999998887743
No 231
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=96.55 E-value=0.0031 Score=40.57 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=31.9
Q ss_pred CCCccEEEeccccccccce--------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSKQG--------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g--------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|++.|++++..+.... -..|.+.++..+|+|.|+|.+.|.
T Consensus 13 ~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~ 63 (76)
T cd04978 13 IPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNV 63 (76)
T ss_pred eCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEcc
Confidence 5778999999887543221 135677888889999999887774
No 232
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=96.54 E-value=0.0022 Score=42.56 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=27.1
Q ss_pred ccEEEeccccccccc---e----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 64 PICLRFQDLLPQSKQ---G----------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 64 ~~~~w~~~~~~~~~~---g----------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
+.+.|++++.++... + ...|.+.+++..|+|.|+|.+.+.
T Consensus 17 ~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~ 69 (85)
T cd05854 17 LTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTV 69 (85)
T ss_pred eEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecC
Confidence 368999998754321 1 125667788888888888777664
No 233
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.54 E-value=0.012 Score=39.95 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=40.0
Q ss_pred EeCCCcEEEEEEEee-eCC--CEEEEEeCCEEeeccCCccEEE-ec--CCcEEEEEeecCCCCCCCe-EEEEEEEeCCC
Q psy18191 143 VPRHEPTTLNCKADG-YPE--PRIEWYKDGSLVSAEIGSHRIL-LP--AGSLFFLSLVHGKKDTDSG-VYWCVARNELG 214 (238)
Q Consensus 143 ~~~G~~~~L~C~~~g-~P~--p~i~W~~~g~~l~~~~~~~~~~-~~--~~~l~~~~vi~~v~~~d~G-~Y~C~a~N~~G 214 (238)
+.+|+.+++.|.+.+ .|. ..+.|+++...+.......... .+ .....+... .+.+|.| +|+|.|.=.++
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtft---ptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFT---PTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEe---cchhhCCcEEEEEEEEeec
Confidence 478999999999864 454 5699998776655321100000 00 111222211 1578887 89998875443
No 234
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.53 E-value=0.0032 Score=40.53 Aligned_cols=44 Identities=11% Similarity=-0.030 Sum_probs=30.1
Q ss_pred cCCCccEEEeccccc---cccce-------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 60 FYPKPICLRFQDLLP---QSKQG-------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~---~~~~g-------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
..|.|.+.|++++.. ..... ...|.+.++.++|+|.|+|.+.|.
T Consensus 9 G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~ 62 (75)
T cd05763 9 GHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNT 62 (75)
T ss_pred cccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcC
Confidence 367889999998752 11111 125677788888999999887764
No 235
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.50 E-value=0.0028 Score=40.64 Aligned_cols=44 Identities=9% Similarity=0.000 Sum_probs=32.5
Q ss_pred CCCccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++..+.... ...|.+.++..+|+|.|+|.+.|.+
T Consensus 13 ~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 62 (73)
T cd04969 13 APKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFF 62 (73)
T ss_pred cCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCC
Confidence 4678899999987543321 1257788889999999998887753
No 236
>KOG4597|consensus
Probab=96.36 E-value=0.0073 Score=51.78 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=58.7
Q ss_pred CCceEEeCCCcEEEEEEEeeeCCCEEEEEe---CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCC
Q psy18191 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYK---DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g~P~p~i~W~~---~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G 214 (238)
|....+..+++..+.|-+.|.|.+.|+|.+ |+..+... .........-+.+-.++|-+....|+|+|+|.|.|..|
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG 281 (560)
T ss_pred cchhhcccchhhcccccccCCcCceeeeehhhccccceeec-CccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence 444566788999999999999999999975 33333321 11111100011122334666799999999999999999
Q ss_pred ceeEEEEEEEEcc
Q psy18191 215 FARSKNATLDVAG 227 (238)
Q Consensus 215 ~~~s~~~~L~V~~ 227 (238)
... ..+.+.+..
T Consensus 282 ~~~-rdv~c~s~~ 293 (560)
T KOG4597|consen 282 FLR-RDVPCSSVK 293 (560)
T ss_pred eee-ccceeeeec
Confidence 986 577777643
No 237
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=96.31 E-value=0.0062 Score=40.84 Aligned_cols=24 Identities=13% Similarity=0.038 Sum_probs=18.9
Q ss_pred EEEcCCCCCCCCCceEEEeCCCcc
Q psy18191 82 YLVGSQASPDYPNRFSLCNNKTWQ 105 (238)
Q Consensus 82 ~l~~~~~~~~~~g~y~~~~~~~~~ 105 (238)
.|.+.++..+|+|.|+|.+.|.+.
T Consensus 56 ~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 56 VLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred eEEEeccccccCcEEEEEeecccC
Confidence 566778888999999988888544
No 238
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=96.31 E-value=0.0094 Score=38.38 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=32.1
Q ss_pred CCCccEEEeccccccccc---e------EEEEEcCCCCCCCCCceEEEeCCCcc
Q psy18191 61 YPKPICLRFQDLLPQSKQ---G------LMYLVGSQASPDYPNRFSLCNNKTWQ 105 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~---g------~~~l~~~~~~~~~~g~y~~~~~~~~~ 105 (238)
.|.|.+.|++++..+... . ...|.+..+..+|.|.|+|.+.+...
T Consensus 10 ~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G 63 (76)
T cd05736 10 IPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAG 63 (76)
T ss_pred cCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCC
Confidence 467789999988754321 1 13467778889999999988887543
No 239
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=96.29 E-value=0.011 Score=39.51 Aligned_cols=44 Identities=9% Similarity=-0.108 Sum_probs=32.0
Q ss_pred CCCccEEEeccccccccc--e------------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQ--G------------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~--g------------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.+.+.|++++..+... . ...|.|.++..+|.|.|+|.+.|..
T Consensus 13 ~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~ 70 (88)
T cd05735 13 EKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSY 70 (88)
T ss_pred CCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCC
Confidence 356789999988644221 1 1468888899999999998888854
No 240
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=96.27 E-value=0.0051 Score=41.56 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=32.2
Q ss_pred CCCccEEEeccccccccc--e------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQ--G------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~--g------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++..+... . ...|.+.++..+|.|.|+|.+.|..
T Consensus 30 ~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (95)
T cd05730 30 FPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKA 81 (95)
T ss_pred eCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCC
Confidence 568899999998755432 1 1247778888889999998887753
No 241
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.26 E-value=0.014 Score=40.02 Aligned_cols=46 Identities=28% Similarity=0.394 Sum_probs=33.6
Q ss_pred cEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEc
Q psy18191 179 HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226 (238)
Q Consensus 179 ~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~ 226 (238)
.++.+..+.+.+. |+.++..|+|.|.-..+|..|....+.+.+.|.
T Consensus 62 ~r~~F~~enlaLl--IkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 62 NRFNFTSENLALL--IKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp HHEEEETTTTEEE--ESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ceEeeeccCceEE--EeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 3444445555544 888899999999999999999997677777764
No 242
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=96.19 E-value=0.0041 Score=41.20 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=32.1
Q ss_pred CCCccEEEeccccccccce-E----EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQG-L----MYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g-~----~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++.++...+ + ..|.+.++..+|+|.|+|.+.|.+
T Consensus 26 ~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 74 (85)
T cd05728 26 NPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKH 74 (85)
T ss_pred eCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCC
Confidence 5678899999988654322 1 256667888889999998887753
No 243
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=96.13 E-value=0.0085 Score=40.79 Aligned_cols=41 Identities=10% Similarity=-0.088 Sum_probs=29.8
Q ss_pred CccEEEec-cccccccce-----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 63 KPICLRFQ-DLLPQSKQG-----------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 63 ~~~~~w~~-~~~~~~~~g-----------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.+.|++ ++..+...+ ...|.|.++.++|+|.|+|.+.|.
T Consensus 30 ~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 30 DKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred CCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 46899998 665433211 246788899999999999888874
No 244
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=96.11 E-value=0.01 Score=40.38 Aligned_cols=43 Identities=14% Similarity=0.019 Sum_probs=30.8
Q ss_pred CCCccEEEeccccccccc-----e---------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSKQ-----G---------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~-----g---------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|.+.|++++..+... + ...|.+.++..+|+|.|+|.+.|.
T Consensus 29 ~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 85 (97)
T cd05869 29 DPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNT 85 (97)
T ss_pred eCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecC
Confidence 467899999977543211 1 236778888889999999888774
No 245
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=96.07 E-value=0.011 Score=37.54 Aligned_cols=43 Identities=9% Similarity=-0.045 Sum_probs=27.7
Q ss_pred cCCCccEEEeccccccccce-----EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 60 FYPKPICLRFQDLLPQSKQG-----LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~g-----~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
..|.|++.|++++.++.... ...|.+.++ .|+|.|+|.+.|.+
T Consensus 12 G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~ 59 (69)
T cd05739 12 GAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSL 59 (69)
T ss_pred ecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCC
Confidence 36788999999987554321 123555554 36788887777743
No 246
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=96.07 E-value=0.021 Score=38.56 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=28.0
Q ss_pred cCCCccEEEeccccccccc-eEE------EEEcCCC-CCCCCCceEEEeCCC
Q psy18191 60 FYPKPICLRFQDLLPQSKQ-GLM------YLVGSQA-SPDYPNRFSLCNNKT 103 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~-g~~------~l~~~~~-~~~~~g~y~~~~~~~ 103 (238)
..|.|.+.|++++.++... ... .|.+.++ .+.|.|.|.|.+.|.
T Consensus 30 G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 30 GNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred ecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence 3578899999998866432 111 3344454 357778888777664
No 247
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=96.00 E-value=0.0065 Score=40.68 Aligned_cols=24 Identities=4% Similarity=-0.013 Sum_probs=19.6
Q ss_pred EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 81 MYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 81 ~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.+|.+.++..+|+|.|+|.+.|..
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCC
Confidence 468888999999999998887753
No 248
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=96.00 E-value=0.011 Score=39.89 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=31.1
Q ss_pred CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|.+.||+++..+...+ ...|.+.++.++|+|.|+|.+.|.
T Consensus 28 ~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 80 (92)
T cd05891 28 NPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNK 80 (92)
T ss_pred eCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence 4677899999876432211 135778888899999999888774
No 249
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.97 E-value=0.085 Score=36.98 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=41.9
Q ss_pred CCceEEeCCCcEEEEEEEeeeCC---CEEEEEeCCE-Ee---ec--c-------CCccE-EE--ecCCcEEEEEeecCCC
Q psy18191 138 PASAVVPRHEPTTLNCKADGYPE---PRIEWYKDGS-LV---SA--E-------IGSHR-IL--LPAGSLFFLSLVHGKK 198 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g~P~---p~i~W~~~g~-~l---~~--~-------~~~~~-~~--~~~~~l~~~~vi~~v~ 198 (238)
+....+..|+.+.|.|++.|.-. -.+.|+|... .+ .. . ..++. .. .+++++.+ .|..++
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L--~l~~L~ 82 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNF--TLQNLR 82 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEE--EEcCCC
Confidence 34566788999999999976543 3588987421 11 00 0 01111 11 12233333 377889
Q ss_pred CCCCeEEEEEEE
Q psy18191 199 DTDSGVYWCVAR 210 (238)
Q Consensus 199 ~~d~G~Y~C~a~ 210 (238)
.+|.+.|.|.-+
T Consensus 83 a~DTa~Y~Ca~e 94 (115)
T cd05721 83 ANQTDIYFCKIE 94 (115)
T ss_pred HHHCeEEEEEee
Confidence 999999999654
No 250
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=95.97 E-value=0.0095 Score=39.62 Aligned_cols=43 Identities=7% Similarity=-0.133 Sum_probs=31.7
Q ss_pred CCCccEEEeccccccccc-----eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSKQ-----GLMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~-----g~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|.+.|++++...... ....|.+.++..+|+|.|+|.+.|.
T Consensus 28 ~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 75 (88)
T cd04968 28 NPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENI 75 (88)
T ss_pred eCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEEC
Confidence 467789999987633222 1246788899999999999887774
No 251
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=95.93 E-value=0.0082 Score=39.56 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCCccEEEeccccccccce--E-----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSKQG--L-----MYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g--~-----~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|.+.|++++..+.... . ..|.+..+..+|+|.|+|.+.|.
T Consensus 24 ~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 24 HPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred CCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEec
Confidence 4677899999987544321 1 25777788888888888777663
No 252
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=95.92 E-value=0.018 Score=37.24 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=12.5
Q ss_pred CCCccEEEecccccc
Q psy18191 61 YPKPICLRFQDLLPQ 75 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~ 75 (238)
.|.|++.|++++.++
T Consensus 10 ~P~P~v~W~k~g~~l 24 (77)
T cd05733 10 NPPPTFSWTRNGTHF 24 (77)
T ss_pred cCCCeEEEEECCeEC
Confidence 578899999998755
No 253
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=95.90 E-value=0.013 Score=39.49 Aligned_cols=42 Identities=2% Similarity=-0.170 Sum_probs=30.9
Q ss_pred CccEEEeccccccccce------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 63 KPICLRFQDLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 63 ~~~~~w~~~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.+.|++++..+.... -..|.+.++..+|.|.|.|.+.|..
T Consensus 31 ~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 78 (91)
T cd05740 31 ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEV 78 (91)
T ss_pred CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCC
Confidence 67899999887543221 1357888888999999998887743
No 254
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=95.84 E-value=0.016 Score=39.17 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=29.1
Q ss_pred cCCCccEEEeccccccccce--E----EEEEcCCCC-CCCCCceEEEeCCC
Q psy18191 60 FYPKPICLRFQDLLPQSKQG--L----MYLVGSQAS-PDYPNRFSLCNNKT 103 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~g--~----~~l~~~~~~-~~~~g~y~~~~~~~ 103 (238)
..|.|++.|++++.++...+ . ..|.+.++. ..|+|.|.|.+.|.
T Consensus 30 G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 80 (93)
T cd05849 30 ANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNI 80 (93)
T ss_pred cCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeC
Confidence 35788999999987553211 1 245555553 57888888877764
No 255
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=95.84 E-value=0.016 Score=39.41 Aligned_cols=44 Identities=14% Similarity=-0.027 Sum_probs=30.0
Q ss_pred CCCccEEEecc--cccccc--------------ceEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQD--LLPQSK--------------QGLMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~--~~~~~~--------------~g~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++. +..+.. .+...|.+.++..+|+|.|+|.+.|..
T Consensus 28 ~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 28 EPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred CCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence 56788999994 322210 012367888999999999998887753
No 256
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=95.81 E-value=0.019 Score=38.72 Aligned_cols=44 Identities=11% Similarity=-0.020 Sum_probs=31.2
Q ss_pred CCCccEEEecccccccc--------------ceEEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSK--------------QGLMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~--------------~g~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++..+.. .+...|.+.++..+|+|.|+|.+.|..
T Consensus 28 ~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 85 (96)
T cd05732 28 DPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRI 85 (96)
T ss_pred cCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCC
Confidence 46778999998743321 112467888888999999998887753
No 257
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=95.80 E-value=0.0085 Score=39.77 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=32.5
Q ss_pred CCccEEEeccccccccc---------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 62 PKPICLRFQDLLPQSKQ---------GLMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 62 ~~~~~~w~~~~~~~~~~---------g~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
|.+.+.|++++..+... +...|.+.++..+|+|.|+|.+.+.
T Consensus 28 p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 28 PPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp SSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred CCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 67789999998765542 2457888899999999999877764
No 258
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.77 E-value=0.04 Score=37.71 Aligned_cols=81 Identities=20% Similarity=0.328 Sum_probs=47.3
Q ss_pred CCEEEeC-CCceEEeCCCcEEEEEEEeeeC--C-CEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCC--CCe-
Q psy18191 131 VPRITEH-PASAVVPRHEPTTLNCKADGYP--E-PRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT--DSG- 203 (238)
Q Consensus 131 ~P~i~~~-~~~~~~~~G~~~~L~C~~~g~P--~-p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~--d~G- 203 (238)
+|.+... |.......++.+.|.|.+.|.- . -.+.|.++|.. ... ........+++..+...+.. ..+ .+|
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~-~t~~~~~~dgTys~~S~L~v-~~~~W~~g~ 79 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAV-QTSAESDQCGCYSVSSVLPG-CAEEWNKGE 79 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcE-EcCcccCCCCCEEEEEEEEe-CHHHhcCCC
Confidence 3444333 3333344678899999998854 2 46999999875 211 11112234666666655432 332 244
Q ss_pred EEEEEEEeCCC
Q psy18191 204 VYWCVARNELG 214 (238)
Q Consensus 204 ~Y~C~a~N~~G 214 (238)
.|+|.+.....
T Consensus 80 ~ytC~V~H~~l 90 (99)
T cd04986 80 PFACTVTHPEG 90 (99)
T ss_pred eEEEEEECCCc
Confidence 69999987654
No 259
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=95.65 E-value=0.018 Score=38.96 Aligned_cols=43 Identities=7% Similarity=-0.078 Sum_probs=30.1
Q ss_pred CCCccEEEecccccccc-----ceE----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSK-----QGL----MYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~-----~g~----~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.+.+.|||++..... ..+ ..|.+..+.++|+|.|+|...|.
T Consensus 31 ~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~ 82 (94)
T cd05756 31 SPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNS 82 (94)
T ss_pred CCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCC
Confidence 46778999998864221 111 25677888899999999877774
No 260
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.57 E-value=0.046 Score=39.18 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=42.2
Q ss_pred CCcEEEEEEEee-----eCCCEEEEEeCCEEeeccC-CccEEE-----------ecCCc--EEEEEeecCCCCCCCeEEE
Q psy18191 146 HEPTTLNCKADG-----YPEPRIEWYKDGSLVSAEI-GSHRIL-----------LPAGS--LFFLSLVHGKKDTDSGVYW 206 (238)
Q Consensus 146 G~~~~L~C~~~g-----~P~p~i~W~~~g~~l~~~~-~~~~~~-----------~~~~~--l~~~~vi~~v~~~d~G~Y~ 206 (238)
.+++.|+|.+.. .+.-.+.|..+|..+-... ...... +..|. |.+.. ...-.|+|+
T Consensus 27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~-----~~a~~GnYT 101 (130)
T PF08204_consen 27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDK-----SDAVEGNYT 101 (130)
T ss_dssp -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEH-----HHHH-EEEE
T ss_pred CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcc-----hhccccceE
Confidence 578899998854 2345699999988765321 111111 11122 33221 122289999
Q ss_pred EEEEeCCCceeEEEEEEEE
Q psy18191 207 CVARNELGFARSKNATLDV 225 (238)
Q Consensus 207 C~a~N~~G~~~s~~~~L~V 225 (238)
|.+.+...+.. ..+.|..
T Consensus 102 CeVt~~~~ege-~~i~Lk~ 119 (130)
T PF08204_consen 102 CEVTELSREGE-TTIELKY 119 (130)
T ss_dssp EEEEETTEEEE-EEEEEEE
T ss_pred EEEEecCCCce-EEEEEEE
Confidence 99999988886 4778776
No 261
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=95.53 E-value=0.019 Score=38.82 Aligned_cols=44 Identities=7% Similarity=-0.138 Sum_probs=28.1
Q ss_pred cCCCccEEEeccccccccc-e--E----EEEEcCCCC-CCCCCceEEEeCCC
Q psy18191 60 FYPKPICLRFQDLLPQSKQ-G--L----MYLVGSQAS-PDYPNRFSLCNNKT 103 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~~~~-g--~----~~l~~~~~~-~~~~g~y~~~~~~~ 103 (238)
..|.|++.|++++.++... + . ..|.+.++. ..|.|.|.|.+.|.
T Consensus 30 g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05850 30 ASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR 81 (94)
T ss_pred eCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcC
Confidence 3567899999999865421 1 1 134454443 47788888777764
No 262
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=95.51 E-value=0.03 Score=37.75 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=26.4
Q ss_pred CCCccEEEeccccccccc----e----------EE--EEEcCCCCCCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQ----G----------LM--YLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~----g----------~~--~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
.|.|.+.|++++..+... . .. .+....+..+|+|.|+|.+.|..
T Consensus 28 ~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~ 87 (100)
T cd07693 28 RPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSL 87 (100)
T ss_pred CCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccc
Confidence 467789999998755431 1 01 11122335778888887776643
No 263
>PHA03042 CD47-like protein; Provisional
Probab=95.48 E-value=0.092 Score=42.12 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=42.2
Q ss_pred CCcEEEEEEEeee-----CCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEE
Q psy18191 146 HEPTTLNCKADGY-----PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKN 220 (238)
Q Consensus 146 G~~~~L~C~~~g~-----P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~ 220 (238)
.+++.++|.+..- ..-.+.|..++..+-...... ..++.+. . ...-.|+|+|.|.+..-+.. +.
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-----~aSL~~~-f----~~~l~GNYTCEv~~l~n~gk-~~ 99 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-----TSSLKFN-F----SKNLSGNYTCEAINKFNKIK-NT 99 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-----ceEEEEe-c----cccCCCceeEEEeecccCcc-EE
Confidence 5678899987432 355799999998775431110 0112211 1 44558999999998765554 35
Q ss_pred EEEE
Q psy18191 221 ATLD 224 (238)
Q Consensus 221 ~~L~ 224 (238)
+.|+
T Consensus 100 IeLk 103 (286)
T PHA03042 100 IELQ 103 (286)
T ss_pred EEEE
Confidence 5554
No 264
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=95.47 E-value=0.02 Score=38.25 Aligned_cols=43 Identities=7% Similarity=-0.057 Sum_probs=28.9
Q ss_pred CCCccEEEeccccccc--------cc-e-----EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQS--------KQ-G-----LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~--------~~-g-----~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|.+.|++++.... .. . ...|.|.++..+|+|.|+|.+.|.
T Consensus 13 ~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~ 69 (90)
T cd05726 13 NPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNV 69 (90)
T ss_pred cCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcC
Confidence 4677899999875210 01 1 125777788888888888877764
No 265
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=95.31 E-value=0.026 Score=36.62 Aligned_cols=16 Identities=13% Similarity=-0.141 Sum_probs=13.0
Q ss_pred cCCCccEEEecccccc
Q psy18191 60 FYPKPICLRFQDLLPQ 75 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~ 75 (238)
..|.|++.|++++.++
T Consensus 9 G~P~P~i~W~k~g~~l 24 (77)
T cd05874 9 GKPPPSFSWTRNGTHF 24 (77)
T ss_pred ccCCCeEEEEECCeEC
Confidence 3578999999998754
No 266
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=95.24 E-value=0.052 Score=37.81 Aligned_cols=44 Identities=11% Similarity=-0.005 Sum_probs=28.4
Q ss_pred CCCccEEEeccccccccce--E------------EEEEcCCCC-CCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSKQG--L------------MYLVGSQAS-PDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g--~------------~~l~~~~~~-~~~~g~y~~~~~~~~ 104 (238)
.|.+.+.|++++..+...+ . ..|.+.++. .+|.|.|+|.+.|.+
T Consensus 35 ~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~ 93 (109)
T cd05773 35 VPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSL 93 (109)
T ss_pred cCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCC
Confidence 5678899999987554221 1 235555655 467777887777654
No 267
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.16 E-value=0.03 Score=36.29 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=28.6
Q ss_pred CCCccEEEecccc---c--cccc---------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLL---P--QSKQ---------GLMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~---~--~~~~---------g~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|.+.||++.. . .... ....|.|.++.++|+|.|+|.+.|.
T Consensus 13 ~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~ 69 (81)
T cd05765 13 RPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNS 69 (81)
T ss_pred cCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecC
Confidence 5678899999732 1 1110 1135778888888999998877774
No 268
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=95.04 E-value=0.024 Score=37.83 Aligned_cols=41 Identities=12% Similarity=-0.096 Sum_probs=29.7
Q ss_pred CCccEEEeccccccccce--E----EEEEcCCCCCCCCCceEEEeCC
Q psy18191 62 PKPICLRFQDLLPQSKQG--L----MYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 62 ~~~~~~w~~~~~~~~~~g--~----~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
+.+++.|++++.++.... + ..|.|.++...|+|.|+|.+..
T Consensus 23 ~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e 69 (87)
T cd05873 23 NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVE 69 (87)
T ss_pred CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEe
Confidence 356899999998765432 1 2466778888899999977655
No 269
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=94.89 E-value=0.036 Score=37.05 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=27.8
Q ss_pred CCCccEEEecccccccc-ce--E----EEEEcCCCC-CCCCCceEEEeCCCc
Q psy18191 61 YPKPICLRFQDLLPQSK-QG--L----MYLVGSQAS-PDYPNRFSLCNNKTW 104 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~-~g--~----~~l~~~~~~-~~~~g~y~~~~~~~~ 104 (238)
.|.|++.|++++.++.. .+ . ..|.+.++. .+|+|.|+|.+.|..
T Consensus 31 ~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~ 82 (91)
T cd04967 31 SPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIV 82 (91)
T ss_pred cCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCC
Confidence 46779999999876522 11 1 134444444 478888888777643
No 270
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=94.83 E-value=0.044 Score=36.85 Aligned_cols=40 Identities=10% Similarity=-0.114 Sum_probs=28.1
Q ss_pred ccEEEec-ccccccc-c---------eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 64 PICLRFQ-DLLPQSK-Q---------GLMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 64 ~~~~w~~-~~~~~~~-~---------g~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
+.+.|++ ++..+.. . ....|.|.++.++|+|.|+|.+.|.
T Consensus 29 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 29 KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcC
Confidence 3788997 4433222 1 1247888999999999999888774
No 271
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=94.82 E-value=0.034 Score=37.49 Aligned_cols=39 Identities=8% Similarity=-0.109 Sum_probs=27.7
Q ss_pred cEEEecc-ccccccc--------e-EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 65 ICLRFQD-LLPQSKQ--------G-LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 65 ~~~w~~~-~~~~~~~--------g-~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.+.||++ +..+... | ...|.|..+..+|+|.|+|.+.|.
T Consensus 30 ~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~ 78 (92)
T cd05866 30 SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 78 (92)
T ss_pred eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcC
Confidence 7899984 4443321 1 236888899999999999888875
No 272
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=94.73 E-value=0.045 Score=36.00 Aligned_cols=43 Identities=5% Similarity=-0.144 Sum_probs=31.0
Q ss_pred CCccEEEeccccccccce---EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 62 PKPICLRFQDLLPQSKQG---LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 62 ~~~~~~w~~~~~~~~~~g---~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
+.+.+.|++++....... -..|.+..+.++|+|.|.|.+.+..
T Consensus 30 ~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~ 75 (85)
T cd05754 30 PAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNML 75 (85)
T ss_pred CCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccC
Confidence 567899999886432211 2367888999999999998877643
No 273
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=94.60 E-value=0.051 Score=35.21 Aligned_cols=43 Identities=12% Similarity=0.032 Sum_probs=27.6
Q ss_pred CCCccEEEeccccccc--------cce------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQS--------KQG------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~--------~~g------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|.+.|+++..... ..+ ...|.+.++..+|+|.|.|.+.|.
T Consensus 10 ~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 66 (79)
T cd05734 10 YPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSND 66 (79)
T ss_pred eCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeC
Confidence 5778999999643110 111 124667777888888888777764
No 274
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=94.59 E-value=0.062 Score=34.96 Aligned_cols=37 Identities=3% Similarity=-0.149 Sum_probs=23.9
Q ss_pred ccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCC
Q psy18191 64 PICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 64 ~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
..+.||+++..+...+ ..+.+.++ .+|+|.|+|.+.+
T Consensus 31 ~~~~W~kng~~l~~~~-~~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 31 NSTQWYHNGKLLETTT-NSYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred ccEEEEECCEEeeccC-CeEEEeec-ccCCEEeEEECCC
Confidence 4589999998663322 23445555 7788888866554
No 275
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=94.59 E-value=0.085 Score=34.13 Aligned_cols=16 Identities=13% Similarity=-0.186 Sum_probs=13.0
Q ss_pred cCCCccEEEecccccc
Q psy18191 60 FYPKPICLRFQDLLPQ 75 (238)
Q Consensus 60 ~~~~~~~~w~~~~~~~ 75 (238)
..|.|++.|++++.++
T Consensus 9 G~P~P~v~W~k~g~~~ 24 (77)
T cd05875 9 GNPVPTFQWTRNGKFF 24 (77)
T ss_pred ccCCCEEEEEECCEEc
Confidence 4689999999998744
No 276
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=94.48 E-value=0.085 Score=34.56 Aligned_cols=46 Identities=11% Similarity=-0.049 Sum_probs=28.2
Q ss_pred cccCCCccEEEeccccccccc------e----E-EEEEcCCCCCCCCCceEEEeCCC
Q psy18191 58 GGFYPKPICLRFQDLLPQSKQ------G----L-MYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 58 ~~~~~~~~~~w~~~~~~~~~~------g----~-~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.+..|.+++.||+++.++... + . ..|.+.-...+|++.|+|.+.+.
T Consensus 9 ~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 9 PRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHP 65 (80)
T ss_pred CCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEECh
Confidence 345788999999999866431 1 1 12444444555666677666553
No 277
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.27 E-value=0.076 Score=42.45 Aligned_cols=49 Identities=24% Similarity=0.450 Sum_probs=36.0
Q ss_pred CCCEEEEEe-CCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCC
Q psy18191 159 PEPRIEWYK-DGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL 213 (238)
Q Consensus 159 P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~ 213 (238)
.-|.+.|.- +|..+.. .+...+.+.|.|.+... ...++|.|+|...-..
T Consensus 11 iDP~y~W~GP~g~~l~g--n~~~nIT~TG~L~~~~F----~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSG--NSYVNITETGKLMFKNF----QESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCC--CCeEEEccCceEEeecc----ccccCCceEEEEEEEe
Confidence 358899986 4555552 33445567888987776 9999999999988655
No 278
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=94.20 E-value=0.081 Score=31.62 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=28.6
Q ss_pred CCCccEEEecccccccc-----ceEEEEEcCCCCCCCCCceEEEeCC
Q psy18191 61 YPKPICLRFQDLLPQSK-----QGLMYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~-----~g~~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
.+.+.+.|++++..+.. .....|.+..+...|+|.|+|...+
T Consensus 14 ~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 60 (63)
T smart00408 14 DPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAEN 60 (63)
T ss_pred CCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEec
Confidence 34567899998764431 1123567778888889999877655
No 279
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.16 E-value=0.045 Score=34.88 Aligned_cols=43 Identities=14% Similarity=-0.018 Sum_probs=27.1
Q ss_pred CCCccEEEec-cccccccce------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQ-DLLPQSKQG------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~-~~~~~~~~g------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.|.|.+.|++ ++..+.... ...|.+..+..+|.|.|+|.+.|.
T Consensus 13 ~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 62 (74)
T cd05764 13 DPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNA 62 (74)
T ss_pred cCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECC
Confidence 4677899997 444332221 123555677778888888777774
No 280
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=94.02 E-value=0.1 Score=34.18 Aligned_cols=24 Identities=8% Similarity=-0.013 Sum_probs=20.0
Q ss_pred EEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 81 MYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 81 ~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
..|.+.++.+.|+|.|+|.+.+..
T Consensus 49 s~L~I~~v~~~DsG~Y~C~a~n~~ 72 (84)
T cd05742 49 STLTIPNATLKDSGTYTCAASSGT 72 (84)
T ss_pred EEEEECCCChhhCEEEEEEEccCC
Confidence 468889999999999998887743
No 281
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=93.91 E-value=0.11 Score=31.83 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=27.8
Q ss_pred CCCccEEEeccccccccce---EEE--------EEcCCCCCCCCCceEEE
Q psy18191 61 YPKPICLRFQDLLPQSKQG---LMY--------LVGSQASPDYPNRFSLC 99 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g---~~~--------l~~~~~~~~~~g~y~~~ 99 (238)
.+...+.|++++....... ... |.+..+..+|+|.|+|.
T Consensus 14 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 63 (64)
T PF00047_consen 14 PPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCV 63 (64)
T ss_dssp SSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEE
T ss_pred CCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEE
Confidence 4566899999887332211 111 88899999999999975
No 282
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=93.82 E-value=0.08 Score=35.63 Aligned_cols=16 Identities=19% Similarity=0.036 Sum_probs=12.7
Q ss_pred CCCccEEEeccccccc
Q psy18191 61 YPKPICLRFQDLLPQS 76 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~ 76 (238)
.|.|.+.|+|++..+.
T Consensus 26 ~P~p~i~W~k~g~~l~ 41 (95)
T cd05722 26 EPPPKIEWKKDGVLLN 41 (95)
T ss_pred CCCCEEEEEECCeECc
Confidence 4578999999988654
No 283
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=93.32 E-value=0.076 Score=34.94 Aligned_cols=42 Identities=12% Similarity=-0.026 Sum_probs=30.1
Q ss_pred CCccEEEeccccccccc-eEEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 62 PKPICLRFQDLLPQSKQ-GLMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 62 ~~~~~~w~~~~~~~~~~-g~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
+...+.|||++...... ....+.+..+.++|+|.|+|.+.+.
T Consensus 28 ~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 28 PVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred cceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeC
Confidence 34578999998744321 2235678888999999999887764
No 284
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=93.31 E-value=0.072 Score=35.39 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=27.6
Q ss_pred CCccEEEeccccccccce-----E----EEEEcCCCCCCCCCceEEEeCC
Q psy18191 62 PKPICLRFQDLLPQSKQG-----L----MYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 62 ~~~~~~w~~~~~~~~~~g-----~----~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
+.+.+.|++++......+ + .-|.+.++.++|+|.|.|.+.+
T Consensus 23 p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~ 72 (89)
T cd04979 23 NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVE 72 (89)
T ss_pred CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEec
Confidence 456899999986443221 1 2356678888888888877655
No 285
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=92.99 E-value=0.11 Score=35.38 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=23.4
Q ss_pred CCCccEEEecccccc--ccce-E------EEEEcCCCCCCCCCceEEEeCC
Q psy18191 61 YPKPICLRFQDLLPQ--SKQG-L------MYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~--~~~g-~------~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
.|.+.+.|++++.+. .... . --|.+.++...|+|.|+|.+.+
T Consensus 31 ~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 31 YPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred CCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEe
Confidence 567899999997743 1111 0 1233445555555655554444
No 286
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=92.96 E-value=0.17 Score=32.74 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCCccEEEeccccccccce----------EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 61 YPKPICLRFQDLLPQSKQG----------LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g----------~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.+.+.+.|++++..+.... ..-|.+..+.++|.|.|.|.+.+.
T Consensus 21 ~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~ 73 (85)
T cd05729 21 NPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENK 73 (85)
T ss_pred CCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEEC
Confidence 3566799999887543211 123566778888899998877664
No 287
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=92.88 E-value=0.14 Score=33.54 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=25.1
Q ss_pred cCCCc-cEEEecccccccc--ce-EEEEEcCCCCCCCCCceEEEeCCC
Q psy18191 60 FYPKP-ICLRFQDLLPQSK--QG-LMYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 60 ~~~~~-~~~w~~~~~~~~~--~g-~~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
..|.| .+.|++++.++.. .. ...|.+..+ .|.|.|.|.+.|.
T Consensus 24 G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~ 69 (81)
T cd05749 24 GPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNA 69 (81)
T ss_pred eecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEec
Confidence 46778 6999999986542 11 123444443 3566777666664
No 288
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=92.79 E-value=0.19 Score=34.00 Aligned_cols=22 Identities=5% Similarity=-0.032 Sum_probs=16.5
Q ss_pred EEEEcCCCCCCCCCceEEEeCC
Q psy18191 81 MYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 81 ~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
..|.|.++..+|+|.|+|....
T Consensus 62 ~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 62 LIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred EEEEECCCCcccCEEEEEEEEe
Confidence 4677788888888888866554
No 289
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=92.75 E-value=0.28 Score=31.92 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=13.5
Q ss_pred ccCCCccEEEeccccccc
Q psy18191 59 GFYPKPICLRFQDLLPQS 76 (238)
Q Consensus 59 ~~~~~~~~~w~~~~~~~~ 76 (238)
++.|.+.+.|++++.++.
T Consensus 10 g~~P~~~v~W~~~g~~l~ 27 (82)
T cd05759 10 GAKPAAEIIWFRDGEVLD 27 (82)
T ss_pred CccCCCEEEEEECCEEcc
Confidence 345677899999987654
No 290
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=92.58 E-value=0.42 Score=32.32 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=28.0
Q ss_pred CCCc-cEEEeccccccccc--e-------------EEEEEcCCCCC-CCCCceEEEeCCC
Q psy18191 61 YPKP-ICLRFQDLLPQSKQ--G-------------LMYLVGSQASP-DYPNRFSLCNNKT 103 (238)
Q Consensus 61 ~~~~-~~~w~~~~~~~~~~--g-------------~~~l~~~~~~~-~~~g~y~~~~~~~ 103 (238)
.|.| .+.|++++..+... + ...|.|.++.. +|.|.|+|.+.|.
T Consensus 28 ~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 28 TPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred cCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence 4666 58999988644321 1 13577777777 4478888777764
No 291
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=92.43 E-value=0.27 Score=32.30 Aligned_cols=41 Identities=5% Similarity=-0.206 Sum_probs=28.0
Q ss_pred CCccEEEecccc----cccc--------c-eEEEEEcCCCCCCCCCceEEEeCC
Q psy18191 62 PKPICLRFQDLL----PQSK--------Q-GLMYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 62 ~~~~~~w~~~~~----~~~~--------~-g~~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
+.+.+.|++.+. .... . ....|.|.++++.|+|.|+|.+.+
T Consensus 14 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n 67 (84)
T cd05861 14 EVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHE 67 (84)
T ss_pred CccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEE
Confidence 456788887543 1111 1 134788999999999999988765
No 292
>PHA03052 Hypothetical protein; Provisional
Probab=92.30 E-value=0.66 Score=28.96 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=28.4
Q ss_pred CCceEEeCCCcEEEEEEEe-eeC--CCEEEEEeCCEEee
Q psy18191 138 PASAVVPRHEPTTLNCKAD-GYP--EPRIEWYKDGSLVS 173 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~-g~P--~p~i~W~~~g~~l~ 173 (238)
|..+.+..|..+++.|++. |.| .+.+.|.-|+..+.
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 4567788999999999984 433 46799999998873
No 293
>PHA03269 envelope glycoprotein C; Provisional
Probab=92.10 E-value=1.2 Score=38.84 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=49.4
Q ss_pred CccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC---EEEEEeCCEEeeccCCcc-EEEecCCcEEEEEeecC--CCCCC
Q psy18191 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP---RIEWYKDGSLVSAEIGSH-RILLPAGSLFFLSLVHG--KKDTD 201 (238)
Q Consensus 128 v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~g~~l~~~~~~~-~~~~~~~~l~~~~vi~~--v~~~d 201 (238)
...+|.+... ...+.+|+...-.|.+..+-+| .+.|+.||.++....-.. .....+|.+...+++.. ....|
T Consensus 326 ~yr~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d 403 (566)
T PHA03269 326 SYKRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNAD 403 (566)
T ss_pred EecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccC
Confidence 4456665543 3456789999999998776544 499999998887421111 12234565554444321 11122
Q ss_pred --CeEEEEEEEeCC
Q psy18191 202 --SGVYWCVARNEL 213 (238)
Q Consensus 202 --~G~Y~C~a~N~~ 213 (238)
--..+|.+.=.-
T Consensus 404 ~~PPsLrCeV~W~R 417 (566)
T PHA03269 404 YPPPAIQCNVLWIR 417 (566)
T ss_pred CCCCCceEEEEEcc
Confidence 124589887433
No 294
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.79 E-value=1.5 Score=36.83 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=38.4
Q ss_pred cEEEEEEEeeeCCC--EEEEEeC---------C---EEeeccCC----c-----cEEEecC-CcEEEEEeecCCCCCCCe
Q psy18191 148 PTTLNCKADGYPEP--RIEWYKD---------G---SLVSAEIG----S-----HRILLPA-GSLFFLSLVHGKKDTDSG 203 (238)
Q Consensus 148 ~~~L~C~~~g~P~p--~i~W~~~---------g---~~l~~~~~----~-----~~~~~~~-~~l~~~~vi~~v~~~d~G 203 (238)
.+.|.|.|.|.-+. .+.|.++ | ..+..+.+ . ......+ |+..+...+ .+...+..
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v-~v~~~~~~ 294 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSV-RVPTDMSN 294 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEE-EeCCCCCC
Confidence 57999999998654 4789999 4 22221100 0 0111224 366665544 34566777
Q ss_pred EEEEEEEeCC
Q psy18191 204 VYWCVARNEL 213 (238)
Q Consensus 204 ~Y~C~a~N~~ 213 (238)
.|+|...-.-
T Consensus 295 ~Y~C~V~Hsg 304 (338)
T PHA02865 295 QIVCVVFHST 304 (338)
T ss_pred CcEEEEEeCC
Confidence 8999997643
No 295
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=91.65 E-value=2.7 Score=27.83 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=45.7
Q ss_pred cCCEEEeCCCceEE--eCC--CcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEE
Q psy18191 130 RVPRITEHPASAVV--PRH--EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVY 205 (238)
Q Consensus 130 ~~P~i~~~~~~~~~--~~G--~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y 205 (238)
.++.|+.++....+ ..+ +...|.+++.+. .+.+.|+.||..+..... ...+. . .....|.|
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-------~~~~~---~----~~~~~G~h 73 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP-------GHQLF---W----QPDRPGEH 73 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC-------CCeEE---e----CCCCCeeE
Confidence 46677666544333 222 256666777666 558999999998843211 11221 1 45578999
Q ss_pred EEEEEeCCCcee
Q psy18191 206 WCVARNELGFAR 217 (238)
Q Consensus 206 ~C~a~N~~G~~~ 217 (238)
+-.+....|...
T Consensus 74 ~l~vvD~~G~~~ 85 (89)
T PF06832_consen 74 TLTVVDAQGRSA 85 (89)
T ss_pred EEEEEcCCCCEE
Confidence 998888888874
No 296
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=90.90 E-value=0.23 Score=33.33 Aligned_cols=42 Identities=5% Similarity=-0.088 Sum_probs=27.0
Q ss_pred CCCccEEEecccc--cc----ccc-e----EEEEEcCCCCCCCCCceEEEeCC
Q psy18191 61 YPKPICLRFQDLL--PQ----SKQ-G----LMYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 61 ~~~~~~~w~~~~~--~~----~~~-g----~~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
.|.+.+.||+... .. ... . -..|.|..+.++|+|.|+|.+.+
T Consensus 22 ~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~ 74 (91)
T cd05871 22 SPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVE 74 (91)
T ss_pred CCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEc
Confidence 3567899998321 11 011 1 12477888999999999987764
No 297
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=90.58 E-value=0.29 Score=33.71 Aligned_cols=39 Identities=3% Similarity=-0.063 Sum_probs=25.8
Q ss_pred cEEEecccccccc------c--eE----EEEEcCCCCCCCCCceEEEeCCC
Q psy18191 65 ICLRFQDLLPQSK------Q--GL----MYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 65 ~~~w~~~~~~~~~------~--g~----~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
.+.|||++.+... . .+ .+|.+..+.++|+|.|+|...|.
T Consensus 42 ~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~ 92 (104)
T cd05896 42 SLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNS 92 (104)
T ss_pred eEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCC
Confidence 6899999632111 1 11 25556678889999999877764
No 298
>PHA03270 envelope glycoprotein C; Provisional
Probab=90.53 E-value=2.2 Score=36.82 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=47.5
Q ss_pred EEEcCCCCCCCCCceEEEeCCCcccCCceEEeCCCCcceecceecCCccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC
Q psy18191 82 YLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP 161 (238)
Q Consensus 82 ~l~~~~~~~~~~g~y~~~~~~~~~~G~y~c~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p 161 (238)
-|.|........|.|+....+..... . ..+ .+......+|.+... ...+.+|+...-.|.+..+-+|
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~----~--~~~-----~VtV~~yr~Psvsv~--~~PvL~Ge~Y~AtC~va~YYPp 249 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPH----R--YGT-----WTRVRMFRRPSLSIR--PHAVLEGEPFGATCVAANYYPG 249 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCce----e--eee-----EEEEEEecCCccccc--CCccccCCCceEEEEeeeecCC
Confidence 36666777777888875422211100 0 000 111112346666553 3456789999999998776544
Q ss_pred ---EEEEEeCCEEeec
Q psy18191 162 ---RIEWYKDGSLVSA 174 (238)
Q Consensus 162 ---~i~W~~~g~~l~~ 174 (238)
.+.|+.||.++..
T Consensus 250 ~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 250 DRAAFRWFEGGDEVFA 265 (466)
T ss_pred CceEEEEEeCCccccC
Confidence 4999999998853
No 299
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=90.35 E-value=0.49 Score=32.06 Aligned_cols=42 Identities=5% Similarity=-0.160 Sum_probs=22.4
Q ss_pred CCCccEEEeccccc-cccceE------EEEEcCCCCCCCCC-ceEEEeCC
Q psy18191 61 YPKPICLRFQDLLP-QSKQGL------MYLVGSQASPDYPN-RFSLCNNK 102 (238)
Q Consensus 61 ~~~~~~~w~~~~~~-~~~~g~------~~l~~~~~~~~~~g-~y~~~~~~ 102 (238)
.|.|++.|+++... +...+- -.|.+.++...|+| .|.|.+.+
T Consensus 31 ~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~ 80 (95)
T cd05845 31 AVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHF 80 (95)
T ss_pred CCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEc
Confidence 56899999987652 322211 13334455555555 45544443
No 300
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.77 E-value=3.7 Score=27.41 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=39.1
Q ss_pred CCceEEeCCCcEEEEEEEe-----eeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEE
Q psy18191 138 PASAVVPRHEPTTLNCKAD-----GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV 208 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~-----g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~ 208 (238)
|....+..|+.++..|... ......+.|..++..++. .......++...+. +........-.|.|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~---~qy~~in~~~SsVT--~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG---SQYRVINDTVSSVT--LPNLNPTGATLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC---GCEEEESTTEEEEE--ESS--SSEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh---hHcceeCCeEEEEE--EccCCCCCceEEEEE
Confidence 4567788999999999873 235678999999886653 44445556654444 233233333355554
No 301
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=89.39 E-value=4.4 Score=26.47 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=18.7
Q ss_pred CCCCCeEEEEEE-EeCCCceeEEEEEEEE
Q psy18191 198 KDTDSGVYWCVA-RNELGFARSKNATLDV 225 (238)
Q Consensus 198 ~~~d~G~Y~C~a-~N~~G~~~s~~~~L~V 225 (238)
..+|+|...|.| .|..-...+ ...|.|
T Consensus 51 ~~~d~G~w~C~a~~~~~k~~~s-~~~i~v 78 (80)
T PF05790_consen 51 TTEDSGTWVCTASDNEPKERES-KIEILV 78 (80)
T ss_dssp TCGGSEEEEEEEEECTTEEEEE-EEEEEE
T ss_pred CCCCCEEEEEEEcCCceEEEEE-EEEEEc
Confidence 679999999999 555544443 555554
No 302
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=89.10 E-value=0.25 Score=32.77 Aligned_cols=39 Identities=13% Similarity=0.005 Sum_probs=25.7
Q ss_pred CccEEEeccccccccce-E----EEEEcCCCCCCCCCceEEEeC
Q psy18191 63 KPICLRFQDLLPQSKQG-L----MYLVGSQASPDYPNRFSLCNN 101 (238)
Q Consensus 63 ~~~~~w~~~~~~~~~~g-~----~~l~~~~~~~~~~g~y~~~~~ 101 (238)
.+.+.|+.++.++.... + .-+.+..+.+.|+|.|.|.+.
T Consensus 24 ~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 24 LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 55899999988765432 1 123455677788888886644
No 303
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=88.66 E-value=1.6 Score=30.15 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=30.1
Q ss_pred CccEEEeccccccccceE-EEEEcC---CCCCCCCCceEEEeCCCcc--------cCCceEEeCCCC
Q psy18191 63 KPICLRFQDLLPQSKQGL-MYLVGS---QASPDYPNRFSLCNNKTWQ--------KGLPLKKYHPPS 117 (238)
Q Consensus 63 ~~~~~w~~~~~~~~~~g~-~~l~~~---~~~~~~~g~y~~~~~~~~~--------~G~y~c~~~~~~ 117 (238)
...+.|||....-....+ .+.... ...+.++|++.+..++++. .|.|.|.+....
T Consensus 27 ~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~ 93 (105)
T cd05774 27 LLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQTITTN 93 (105)
T ss_pred ceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEEEeCC
Confidence 347899996442222222 222221 3334567777777666553 788888655443
No 304
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=87.80 E-value=0.97 Score=30.44 Aligned_cols=22 Identities=9% Similarity=-0.004 Sum_probs=15.6
Q ss_pred EEEEcCCCCCCCCCceEEEeCC
Q psy18191 81 MYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 81 ~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
..|.|.++.++|+|.|+|....
T Consensus 62 ~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 62 LSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred EEEEECcCCcccCEEEEEEeEe
Confidence 3567778888888888865543
No 305
>PHA03273 envelope glycoprotein C; Provisional
Probab=87.27 E-value=7.9 Score=33.80 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=32.7
Q ss_pred ccCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC---EEEEEeCCEEee
Q psy18191 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEP---RIEWYKDGSLVS 173 (238)
Q Consensus 129 ~~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~g~~l~ 173 (238)
..+|.+... ...+.+|+...-.|.+...-+| .+.|+.||.++.
T Consensus 235 yr~Psvsv~--~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 235 YNAPLVDLS--VHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred ecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 356666553 3456789999999998776544 499999999887
No 306
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=87.15 E-value=1.7 Score=28.55 Aligned_cols=45 Identities=7% Similarity=-0.064 Sum_probs=26.3
Q ss_pred cccCCCccEEEeccccccccc---------e--E-EEEEcCCCCCCCCC-ceEEEeCCC
Q psy18191 58 GGFYPKPICLRFQDLLPQSKQ---------G--L-MYLVGSQASPDYPN-RFSLCNNKT 103 (238)
Q Consensus 58 ~~~~~~~~~~w~~~~~~~~~~---------g--~-~~l~~~~~~~~~~g-~y~~~~~~~ 103 (238)
.+..|.+.+.||+++.++... + . ..|.+ .+..+|.| .|+|.+.+.
T Consensus 9 ~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~-~p~~eDdG~~~~C~a~~~ 66 (82)
T cd05883 9 MASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLML-KVTKEDDGVPVICLVDHP 66 (82)
T ss_pred cCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEE-ECchhhCCCEEEEEEcCc
Confidence 355788899999998754331 1 1 23333 44444444 577666664
No 307
>PHA02982 hypothetical protein; Provisional
Probab=86.35 E-value=4.1 Score=31.74 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=46.4
Q ss_pred ceEEeCCCcEEEEEEE-eeeCCCEEEEEeCC-EEeecc-------------CCccE---EEecCCcEEEEEeecCCCCCC
Q psy18191 140 SAVVPRHEPTTLNCKA-DGYPEPRIEWYKDG-SLVSAE-------------IGSHR---ILLPAGSLFFLSLVHGKKDTD 201 (238)
Q Consensus 140 ~~~~~~G~~~~L~C~~-~g~P~p~i~W~~~g-~~l~~~-------------~~~~~---~~~~~~~l~~~~vi~~v~~~d 201 (238)
++....++++.|.|.. .+.-.....|+.+. ..+... ..+++ ...-++.... +.|+.+..+.
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~ST-LTIkk~~i~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSST-FTMKKPDPQN 111 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEecccee-EEeccCCccc
Confidence 4566789999999985 34445668898743 333311 01111 1111222221 2367779999
Q ss_pred CeEEEEEEEeCCCcee
Q psy18191 202 SGVYWCVARNELGFAR 217 (238)
Q Consensus 202 ~G~Y~C~a~N~~G~~~ 217 (238)
.|-|+|.|....+..+
T Consensus 112 ~GCYtc~~ks~~~k~E 127 (251)
T PHA02982 112 LGCFTCEAKDAEGKEE 127 (251)
T ss_pred CCceEEEEecCCCchh
Confidence 9999999998776653
No 308
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=85.32 E-value=1.1 Score=30.21 Aligned_cols=23 Identities=4% Similarity=-0.018 Sum_probs=15.7
Q ss_pred EEEEcCCCCCCCCCceEEEeCCC
Q psy18191 81 MYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 81 ~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
..|.|.++..+|+|.|.|...+.
T Consensus 65 ~~L~I~~l~~sDsgtY~C~v~~~ 87 (94)
T cd07690 65 FPLIIKNLKIEDSDTYICEVEDK 87 (94)
T ss_pred EEEEECCCCHHHCEEEEEEECCc
Confidence 45777777777777777665553
No 309
>PHA03271 envelope glycoprotein C; Provisional
Probab=84.36 E-value=12 Score=32.44 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=31.7
Q ss_pred cCCEEEeCCCceEEeCCCcEEEEEEEeeeCCC---EEEEEeCCEEeecc
Q psy18191 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEP---RIEWYKDGSLVSAE 175 (238)
Q Consensus 130 ~~P~i~~~~~~~~~~~G~~~~L~C~~~g~P~p---~i~W~~~g~~l~~~ 175 (238)
.+|.+... ...+..|+...-.|.+...-+| .++|+.||..+...
T Consensus 246 RPPsVsV~--a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~ 292 (490)
T PHA03271 246 RPASVDVL--APPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPR 292 (490)
T ss_pred cCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCccccCc
Confidence 45555443 3445789999999998776544 49999999887653
No 310
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=84.03 E-value=3.7 Score=26.86 Aligned_cols=19 Identities=16% Similarity=0.059 Sum_probs=14.4
Q ss_pred cccCCCccEEEeccccccc
Q psy18191 58 GGFYPKPICLRFQDLLPQS 76 (238)
Q Consensus 58 ~~~~~~~~~~w~~~~~~~~ 76 (238)
.++.|...+.|+|++..+.
T Consensus 9 ~gf~P~~~itW~kng~~l~ 27 (83)
T cd05884 9 SGSKPAADIRWFKNDKEIK 27 (83)
T ss_pred CCccCCCEEEEEECCEECc
Confidence 3556678899999998654
No 311
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=82.25 E-value=2.7 Score=27.86 Aligned_cols=40 Identities=3% Similarity=-0.095 Sum_probs=24.7
Q ss_pred CccEEEecccccccc-----ce-EEEEEcCCCCCCCCCceEEEeCC
Q psy18191 63 KPICLRFQDLLPQSK-----QG-LMYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 63 ~~~~~w~~~~~~~~~-----~g-~~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
...+.||+++..... .+ ..-+.+..+.++|+|.|.|...+
T Consensus 29 ~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~ 74 (91)
T cd05751 29 AVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRS 74 (91)
T ss_pred CCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEEC
Confidence 446788888663211 11 23456677888888888876544
No 312
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=82.05 E-value=1.3 Score=27.39 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=24.6
Q ss_pred CccEEEecccc------ccccceEEEEEcCCCCCCCCCceEEEeC
Q psy18191 63 KPICLRFQDLL------PQSKQGLMYLVGSQASPDYPNRFSLCNN 101 (238)
Q Consensus 63 ~~~~~w~~~~~------~~~~~g~~~l~~~~~~~~~~g~y~~~~~ 101 (238)
.+.+.|+.... ........-|.+..+..+|.|.|+|.+.
T Consensus 30 ~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 30 PPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp SEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred CeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEE
Confidence 77899991111 1111123456777888999999997654
No 313
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=81.52 E-value=1.2 Score=28.12 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=26.8
Q ss_pred CCCccEEEeccccccccceEEEEEcCCCCCCCCCceEEEeCC
Q psy18191 61 YPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 61 ~~~~~~~w~~~~~~~~~~g~~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
.+.+.+.|++++..+....-. +++..+..+|+|.|+|.+.+
T Consensus 26 ~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 26 NPPPQVQWYKNGSPINSSQNG-LFIPNVSPEDSGNYTCRASN 66 (80)
T ss_dssp SSSSEEEEEETTEEEEEESSE-EEESSEEGGGTEEEEEEEEE
T ss_pred ccceeeeeeeeeeeeeeeeee-eeeeeeccccCEEEEEEEEe
Confidence 344679999987655432111 45567778888888876654
No 314
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=78.57 E-value=5.1 Score=26.15 Aligned_cols=19 Identities=11% Similarity=-0.121 Sum_probs=14.2
Q ss_pred cccCCCccEEEeccccccc
Q psy18191 58 GGFYPKPICLRFQDLLPQS 76 (238)
Q Consensus 58 ~~~~~~~~~~w~~~~~~~~ 76 (238)
.++.|.+.+.|++++.++.
T Consensus 9 ~g~~P~~~ItW~k~g~~l~ 27 (83)
T cd07705 9 SGSKPAANIKWRKGDQELE 27 (83)
T ss_pred cCccCCCEeEEEECCEECC
Confidence 3456677999999987654
No 315
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=76.59 E-value=5.6 Score=27.27 Aligned_cols=46 Identities=11% Similarity=0.011 Sum_probs=27.0
Q ss_pred ccCCCcc-EEEeccccccccc-e-------------EEEEEcCCCCCCCCCceEEEeCCCc
Q psy18191 59 GFYPKPI-CLRFQDLLPQSKQ-G-------------LMYLVGSQASPDYPNRFSLCNNKTW 104 (238)
Q Consensus 59 ~~~~~~~-~~w~~~~~~~~~~-g-------------~~~l~~~~~~~~~~g~y~~~~~~~~ 104 (238)
-+.|.|. ..|.+++...... . ..-|....+..+++|.|++.+.+..
T Consensus 28 eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 28 EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 3466666 8899875532111 0 1234455677777777777766643
No 316
>PHA03189 UL14 tegument protein; Provisional
Probab=76.27 E-value=28 Score=28.88 Aligned_cols=85 Identities=22% Similarity=0.278 Sum_probs=43.2
Q ss_pred CCceEEeCCCcEEEEEEEeeeCCC--EEE-----EEeC----------CEEeeccC----CccEEEecC-CcEEEEEeec
Q psy18191 138 PASAVVPRHEPTTLNCKADGYPEP--RIE-----WYKD----------GSLVSAEI----GSHRILLPA-GSLFFLSLVH 195 (238)
Q Consensus 138 ~~~~~~~~G~~~~L~C~~~g~P~p--~i~-----W~~~----------g~~l~~~~----~~~~~~~~~-~~l~~~~vi~ 195 (238)
|..+.+..|+.+++.|.+-....| .|. |--. |..+.+.. ......+++ +....+.+-.
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 445667889999999987444334 332 2111 22222110 011112222 1111111222
Q ss_pred CCCCCCCeEEEEEEEeCCCceeEEEEE
Q psy18191 196 GKKDTDSGVYWCVARNELGFARSKNAT 222 (238)
Q Consensus 196 ~v~~~d~G~Y~C~a~N~~G~~~s~~~~ 222 (238)
.+..+-+|.|.|+-.|........++.
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf~ 165 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRFV 165 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEee
Confidence 336778999999999987554333433
No 317
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=75.46 E-value=4.1 Score=26.40 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=13.9
Q ss_pred ccCCCccEEEeccccccc
Q psy18191 59 GFYPKPICLRFQDLLPQS 76 (238)
Q Consensus 59 ~~~~~~~~~w~~~~~~~~ 76 (238)
++.|.+.+.||+++.++.
T Consensus 10 ~~~P~~~v~W~~~~~~l~ 27 (82)
T cd05761 10 GSKPAATIRWFKGDKELK 27 (82)
T ss_pred CcCcCCeEEEEECCEEcc
Confidence 445678999999988664
No 318
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=73.41 E-value=2.7 Score=27.59 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=18.2
Q ss_pred EEEEcCCCCCCCCCceEEEeCC
Q psy18191 81 MYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 81 ~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
..|.+.++...|+|.|+|.+.+
T Consensus 50 s~L~I~~~~~~DsG~Y~C~a~n 71 (86)
T cd05862 50 STLTIENVTLSDLGRYTCTASS 71 (86)
T ss_pred eEEEEecCCcccCEEEEEEEee
Confidence 4678888999999999987766
No 319
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=72.45 E-value=16 Score=24.67 Aligned_cols=70 Identities=17% Similarity=0.287 Sum_probs=39.0
Q ss_pred EEEEEE-EeeeCCCEEEEEeC--CEEeeccCCccEEEecCCcEEEEEeecCC--CCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191 149 TTLNCK-ADGYPEPRIEWYKD--GSLVSAEIGSHRILLPAGSLFFLSLVHGK--KDTDSGVYWCVARNELGFARSKNATL 223 (238)
Q Consensus 149 ~~L~C~-~~g~P~p~i~W~~~--g~~l~~~~~~~~~~~~~~~l~~~~vi~~v--~~~d~G~Y~C~a~N~~G~~~s~~~~L 223 (238)
+.-.|. +.|.|++.|+|.-+ |.. . .......+|+.++..-+..+ ...|.-..+|+..-..-+.. .++.|
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-e----tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~-~~~~L 96 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-E----FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFT-DSVTL 96 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-e----eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecccccc-ccEEe
Confidence 345798 68999999999843 322 1 01112235555544332222 34455589999887644443 35555
Q ss_pred E
Q psy18191 224 D 224 (238)
Q Consensus 224 ~ 224 (238)
.
T Consensus 97 ~ 97 (98)
T cd05890 97 N 97 (98)
T ss_pred c
Confidence 4
No 320
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=72.05 E-value=13 Score=24.60 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=13.3
Q ss_pred EEEcCCCCCCCCCceEEEeC
Q psy18191 82 YLVGSQASPDYPNRFSLCNN 101 (238)
Q Consensus 82 ~l~~~~~~~~~~g~y~~~~~ 101 (238)
.|.|.++..+|+|.|+|...
T Consensus 63 ~L~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd05717 63 SISISNVSLSDEGRYTCSLY 82 (95)
T ss_pred EEEEccCCcccCEEEEEEEe
Confidence 46667777777777775443
No 321
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=67.94 E-value=17 Score=24.70 Aligned_cols=25 Identities=4% Similarity=-0.025 Sum_probs=14.9
Q ss_pred EEEEcCCCCCCC-CCceEEEeCCCcc
Q psy18191 81 MYLVGSQASPDY-PNRFSLCNNKTWQ 105 (238)
Q Consensus 81 ~~l~~~~~~~~~-~g~y~~~~~~~~~ 105 (238)
.-|.|.++...| .|.|.|.+.|.+.
T Consensus 64 S~L~I~~~~~~d~~g~Y~C~a~N~~G 89 (98)
T cd05898 64 STLTINNIMEADFQTHYNCTAWNSFG 89 (98)
T ss_pred EEEEECCCccccCCcEEEEEEEeCCc
Confidence 345566665444 6777777666543
No 322
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=66.98 E-value=5.3 Score=28.04 Aligned_cols=23 Identities=9% Similarity=-0.102 Sum_probs=17.4
Q ss_pred EEEEcCCCCCCCCCceEEEeCCC
Q psy18191 81 MYLVGSQASPDYPNRFSLCNNKT 103 (238)
Q Consensus 81 ~~l~~~~~~~~~~g~y~~~~~~~ 103 (238)
..|.+.+++..|.|.|+|...+.
T Consensus 80 aSI~I~nv~~sD~G~Y~C~v~n~ 102 (116)
T cd05879 80 GSIVIHNLDYTDNGTFTCDVKNP 102 (116)
T ss_pred eEEEEccCCcccCEEEEEEEEcC
Confidence 46777888888888888776654
No 323
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=62.05 E-value=5.6 Score=26.89 Aligned_cols=22 Identities=9% Similarity=-0.076 Sum_probs=17.0
Q ss_pred EEEEcCCCCCCCCCceEEEeCC
Q psy18191 81 MYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 81 ~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
..|.|.+++.+|+|.|.|...+
T Consensus 64 ~sL~I~nv~~sD~GtY~C~v~~ 85 (100)
T cd05888 64 GALILRNAVQADEGKYKCRVIT 85 (100)
T ss_pred eEEEEecCccccceEEEEEEEe
Confidence 4578889999999999966443
No 324
>KOG1026|consensus
Probab=59.48 E-value=5.1 Score=37.45 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=48.2
Q ss_pred ceEEeCCCcEEEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEE
Q psy18191 140 SAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219 (238)
Q Consensus 140 ~~~~~~G~~~~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~ 219 (238)
...+..|..+++.|.+.+.|.|...|+.+.............. ........ .+.|.++|..|....
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c---~~~~~~~~----------~~~c~~E~~~~~~~~- 266 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLC---RSECEVLE----------NDLCIAENAVARSNP- 266 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccc---cccceeee----------chhhHHHHhhhhcCc-
Confidence 4667889999999999999999999998775544321111111 11111111 189999999999863
Q ss_pred EEEEEEcc
Q psy18191 220 NATLDVAG 227 (238)
Q Consensus 220 ~~~L~V~~ 227 (238)
.+.+.+..
T Consensus 267 ~v~~~~~~ 274 (774)
T KOG1026|consen 267 SILLVVDL 274 (774)
T ss_pred eeeeEEec
Confidence 55555543
No 325
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=58.77 E-value=21 Score=22.28 Aligned_cols=44 Identities=25% Similarity=0.515 Sum_probs=26.2
Q ss_pred EEEEEEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEe
Q psy18191 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211 (238)
Q Consensus 150 ~L~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N 211 (238)
+|.|..... --+.|+.||..+- .+...++.+.. -.++|+|+...
T Consensus 2 tltC~s~~s--LPiswYcN~TRLl--------Rlt~~Tlt~~~--------ltcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPSNAS--LPISWYCNGTRLL--------RLTQQTLTVVT--------LTCNFTCVGQS 45 (71)
T ss_pred ceecCCCCC--CcccEEECCceee--------eecCCeEeeee--------eeEEeeecCCC
Confidence 466765432 2378999987664 22344554433 36889997543
No 326
>KOG0613|consensus
Probab=58.77 E-value=21 Score=35.30 Aligned_cols=78 Identities=10% Similarity=0.027 Sum_probs=52.2
Q ss_pred ceEEeCCCcEEEEEEEeeeCCCE-EEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeE
Q psy18191 140 SAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS 218 (238)
Q Consensus 140 ~~~~~~G~~~~L~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s 218 (238)
.+....+..+++.|...+.+.|. +.|+.++....... ...............-|..+...+.+.|.|.|.|..|....
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESL-GALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccc-cccccccccccCcchhhhhcCcccccccccceeccCCcccc
Confidence 45667778899999999999887 99998876555431 11111111111111125556888999999999999999864
No 327
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=58.04 E-value=7.8 Score=27.02 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=14.2
Q ss_pred EEEcCCCCCCCCCceEEEeCC
Q psy18191 82 YLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 82 ~l~~~~~~~~~~g~y~~~~~~ 102 (238)
.|.+.+++++|+|.|.|...+
T Consensus 80 sL~I~~v~~~D~G~Y~C~v~~ 100 (115)
T cd05880 80 SILIWQLQPTDNGTYTCQVKN 100 (115)
T ss_pred EEEEeeCChhhCEEEEEEEEe
Confidence 466677777777777765544
No 328
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=56.86 E-value=9.2 Score=25.97 Aligned_cols=23 Identities=4% Similarity=-0.262 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCCCCCceEEEeCC
Q psy18191 80 LMYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 80 ~~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
-..|.+.+++.+|.|.|+|...+
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t 84 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFAT 84 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEe
Confidence 34677888888999999876554
No 329
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=55.17 E-value=45 Score=28.83 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=44.5
Q ss_pred CceEEeCCCcEEEEEEEe--e-eCCCEEEEEeCCEEeecc---------------CCcc-EEEe----cCCcEEEEEeec
Q psy18191 139 ASAVVPRHEPTTLNCKAD--G-YPEPRIEWYKDGSLVSAE---------------IGSH-RILL----PAGSLFFLSLVH 195 (238)
Q Consensus 139 ~~~~~~~G~~~~L~C~~~--g-~P~p~i~W~~~g~~l~~~---------------~~~~-~~~~----~~~~l~~~~vi~ 195 (238)
....+..|..+.|.|... | .......|+--|-++.+- .... .+.- +.+.....+.|+
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 346778899999999863 3 345678998654333210 0111 1111 122222233366
Q ss_pred CCCCCCCeEEEEEEEeCC
Q psy18191 196 GKKDTDSGVYWCVARNEL 213 (238)
Q Consensus 196 ~v~~~d~G~Y~C~a~N~~ 213 (238)
.+.-+..|-|+|.|....
T Consensus 352 ka~I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGK 369 (500)
T ss_pred eEEEEcCCceEEEEecCc
Confidence 668899999999998653
No 330
>PHA03112 IL-18 binding protein; Provisional
Probab=53.57 E-value=76 Score=23.17 Aligned_cols=27 Identities=22% Similarity=0.587 Sum_probs=21.1
Q ss_pred EeCCCcEEEEEEEeee-CC-CEEEEEeCC
Q psy18191 143 VPRHEPTTLNCKADGY-PE-PRIEWYKDG 169 (238)
Q Consensus 143 ~~~G~~~~L~C~~~g~-P~-p~i~W~~~g 169 (238)
..+++++.|.|.+.+. |. ..+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 3568999999999865 54 568999765
No 331
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=52.47 E-value=11 Score=26.19 Aligned_cols=22 Identities=5% Similarity=-0.109 Sum_probs=14.4
Q ss_pred EEEEcCCCCCCCCCceEEEeCC
Q psy18191 81 MYLVGSQASPDYPNRFSLCNNK 102 (238)
Q Consensus 81 ~~l~~~~~~~~~~g~y~~~~~~ 102 (238)
..|.|.+++++|+|.|.|...+
T Consensus 80 ~sL~I~~v~~~D~G~Y~C~v~~ 101 (116)
T cd05715 80 ASIVIHNLQFTDNGTYTCDVKN 101 (116)
T ss_pred eEEEEeeCCcccCEEEEEEEEe
Confidence 3466677777777777765443
No 332
>KOG3611|consensus
Probab=49.40 E-value=49 Score=31.30 Aligned_cols=73 Identities=23% Similarity=0.398 Sum_probs=39.9
Q ss_pred cEEEEEEEeeeCCCEEEEEeC----CEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEE
Q psy18191 148 PTTLNCKADGYPEPRIEWYKD----GSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223 (238)
Q Consensus 148 ~~~L~C~~~g~P~p~i~W~~~----g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L 223 (238)
...|.|...+.-.+ +.|+.. +................|.+.+..+ +..|.|.|.|.+.+..-........+
T Consensus 571 ~~~l~c~~~~~~a~-~~w~~~~~~~~~~~~~~~~~~~~~~~~G~lll~~~----q~~~~G~y~c~~~e~~~~~~~~~~~~ 645 (737)
T KOG3611|consen 571 SEVLRCVPSSNQAP-VVWYHQSTKDGRKEEVRQRDVVSRTDEGGLVLLSV----QKLDGGTYPCYADESSFVSTVISVNL 645 (737)
T ss_pred cceeeccccccccc-eeeEeeccCccccceeccCcceeecccCceeEEEE----eeccCcccccccccCccccceEEEee
Confidence 46788876554333 788732 1111111122233334565666655 88999999999987553332224444
Q ss_pred EE
Q psy18191 224 DV 225 (238)
Q Consensus 224 ~V 225 (238)
.+
T Consensus 646 ~~ 647 (737)
T KOG3611|consen 646 HV 647 (737)
T ss_pred ee
Confidence 44
No 333
>PF15096 G6B: G6B family
Probab=48.86 E-value=34 Score=26.16 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=17.9
Q ss_pred CCCCCeEEEEEEEeCCCceeEEEEEEEEcc
Q psy18191 198 KDTDSGVYWCVARNELGFARSKNATLDVAG 227 (238)
Q Consensus 198 ~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~ 227 (238)
...|+|.|.|.... ..+| ...|.|.+
T Consensus 82 s~GDSGTFfCkGr~---e~ES-RT~LhVLG 107 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQ---EEES-RTVLHVLG 107 (224)
T ss_pred hcCCccceEecCcc---cccc-eeeeeeec
Confidence 78899999998432 3344 55677755
No 334
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=47.07 E-value=68 Score=19.86 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=14.6
Q ss_pred EeCCCcEEEEEEEeeeCCCEEEEEe
Q psy18191 143 VPRHEPTTLNCKADGYPEPRIEWYK 167 (238)
Q Consensus 143 ~~~G~~~~L~C~~~g~P~p~i~W~~ 167 (238)
+..|+.++|. |.|...+.|++
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4568888885 44545699984
No 335
>PHA03240 envelope glycoprotein M; Provisional
Probab=44.91 E-value=69 Score=25.15 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=22.9
Q ss_pred cCCcEEEEEeecCCCCCCCeEEEEEEEeCCCce---eEEEEEEEE
Q psy18191 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA---RSKNATLDV 225 (238)
Q Consensus 184 ~~~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~---~s~~~~L~V 225 (238)
.+.+|.+..+ ..+|.|+|.-.-....|.. ...-++|.|
T Consensus 103 ~NstL~i~~v----n~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~ 143 (258)
T PHA03240 103 HNSTLIIAHL----NLSDAGEYCRKKCPPKGDCEFPTMSCFRLIL 143 (258)
T ss_pred ccceEEEEEE----eecCcchhhhccCCCCCCcCCCcceeeeEee
Confidence 4566776666 9999999964433344544 111455666
No 336
>PHA03283 envelope glycoprotein E; Provisional
Probab=31.58 E-value=2.1e+02 Score=25.81 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=29.7
Q ss_pred CcEEEEEeecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCC
Q psy18191 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKI 229 (238)
Q Consensus 186 ~~l~~~~vi~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~ 229 (238)
+.+.+.+ ++.+++|.|+-...|..+...+ .+.|.|.++.
T Consensus 134 ~~l~I~~----at~~~aGVYtly~r~d~~~~~~-vflvtVk~~~ 172 (542)
T PHA03283 134 SVLQIQR----ATPNIAGVYTLHVSSDGMMKHS-VFFVTVKKPP 172 (542)
T ss_pred CeeEEEe----cccccCeEEEEEecCCCceEEE-EEEEEecCCC
Confidence 4555444 4999999999999998886654 7888887743
No 337
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=29.79 E-value=84 Score=25.58 Aligned_cols=39 Identities=13% Similarity=-0.004 Sum_probs=25.3
Q ss_pred CCccEEEecccc-ccccceE------EEEEcCCCCCCCCCceEEEe
Q psy18191 62 PKPICLRFQDLL-PQSKQGL------MYLVGSQASPDYPNRFSLCN 100 (238)
Q Consensus 62 ~~~~~~w~~~~~-~~~~~g~------~~l~~~~~~~~~~g~y~~~~ 100 (238)
..|++.|....- .+..... -.|+..+....++|.|+|.-
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtL 56 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTL 56 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEE
Confidence 367889988643 4544321 23666677788888888753
No 338
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=24.12 E-value=68 Score=28.33 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=0.0
Q ss_pred EEeeeCCCEEEEEeCCEEeeccCCccEEEecCCcEEEEEeecCCCCCCCeEEEEEEE
Q psy18191 154 KADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210 (238)
Q Consensus 154 ~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~l~~~~vi~~v~~~d~G~Y~C~a~ 210 (238)
.+...+.+.++|..++..|. +.++...++|.|.|++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~l~--------------------f~~a~~~~sGLYv~V~~ 289 (439)
T PF02480_consen 253 TSHIEPVPGLRWASNGVDLQ--------------------FTNAPESASGLYVFVVY 289 (439)
T ss_dssp EEEE---TTEEE-TTSSSEE--------------------ESS--GGG-EEEEEEEE
T ss_pred hhccCcCccccccCCCcceE--------------------ecCCCcccCceEEEEEE
No 339
>COG5475 Uncharacterized small protein [Function unknown]
Probab=23.68 E-value=1.8e+02 Score=17.53 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=13.8
Q ss_pred CeEEEEEEEeCCCcee
Q psy18191 202 SGVYWCVARNELGFAR 217 (238)
Q Consensus 202 ~G~Y~C~a~N~~G~~~ 217 (238)
.|.|.|...|.+|...
T Consensus 28 ~Gmy~C~Wf~g~g~~~ 43 (60)
T COG5475 28 DGMYECRWFDGYGVKR 43 (60)
T ss_pred CCeEEEEEecCCCccc
Confidence 4999999999999664
No 340
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=21.67 E-value=2e+02 Score=25.09 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=25.7
Q ss_pred ecCCCCCCCeEEEEEEEeCCCceeEEEEEEEEccCCC
Q psy18191 194 VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230 (238)
Q Consensus 194 i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~L~V~~~~~ 230 (238)
+.++...|.|.|.|...-.--+...+.+.|.|.++.+
T Consensus 85 ~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPKId 121 (500)
T PHA02914 85 EENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPKID 121 (500)
T ss_pred ecCcccccCCcEEEEEEeCCceeEEEEEEEEEcccee
Confidence 5566999999999998744433333577777766654
No 341
>KOG0613|consensus
Probab=20.77 E-value=43 Score=33.25 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=18.6
Q ss_pred EEEEEEeeeCCCEEEEEeCCEEeecc
Q psy18191 150 TLNCKADGYPEPRIEWYKDGSLVSAE 175 (238)
Q Consensus 150 ~L~C~~~g~P~p~i~W~~~g~~l~~~ 175 (238)
.+.|. .|.|.|...|+.+|..+...
T Consensus 209 ~~v~s-~gqp~~~~~~~~~g~~i~~~ 233 (1205)
T KOG0613|consen 209 RAVVS-AGQPEPLERWEILGELIAPG 233 (1205)
T ss_pred EEEEe-cCCCccchhhhhcccccCCC
Confidence 33443 48899999999998877654
Done!