RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18191
(238 letters)
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 122 bits (307), Expect = 8e-36
Identities = 58/100 (58%), Positives = 70/100 (70%), Gaps = 4/100 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
PRI EHP+ +V + EP TLNCKA+G P P IEWYK G V + SHR+LLP+GSL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 189 FFLSLVHGKKD-TDSGVYWCVARNELGFARSKNATLDVAG 227
FFL +VHG+K D GVY CVARN LG A S +A+L+VA
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 119 bits (301), Expect = 1e-33
Identities = 53/99 (53%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA-EIGSHRILLPAGS 187
Y+ PRI EHP VV ++EP TLNCK +G PEP IEW+KDG VS E SHR+ G+
Sbjct: 7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
LFF + GKK+ D G YWCVA+N +G A S++A+L +A
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105
Score = 78.0 bits (192), Expect = 1e-17
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 132 PRITEHPASAVVPRHEPTTLNC-KADGYPEPRIEWYKDGSLV-----SAEIGSHRI-LLP 184
P V + E L C G PEP + W KDG + + S R+ ++
Sbjct: 109 DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD 168
Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
G+L ++ + D G Y C+A+N +G S A L V
Sbjct: 169 GGNLLISNV----EPIDEGNYKCIAQNLVGTRESSYAKLIV 205
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 115 bits (290), Expect = 4e-32
Identities = 31/102 (30%), Positives = 42/102 (41%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I P + V + C A G P P I W K+G VS + +L G + L
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTAT 233
+ + D Y CVA N +G A S +ATL + T
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPA 108
Score = 88.7 bits (220), Expect = 8e-22
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P IT+ P + V+ + CKA G P P I W K+ + V ++ + R L G L
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV--DMSNPRYSLKDGFL--- 165
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ ++ D G Y CVA N +G SK L V
Sbjct: 166 -QIENSREEDQGKYECVAENSMGTEHSKATNLYV 198
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 114 bits (288), Expect = 7e-32
Identities = 57/100 (57%), Positives = 69/100 (69%), Gaps = 4/100 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE---IGSHRILLPAGSL 188
PRI EHP+ +V + EP TLNCKA+G P P IEWYK G V + SHR+LLP+GSL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 189 FFLSLVHGK-KDTDSGVYWCVARNELGFARSKNATLDVAG 227
FFL +VHG+ D GVY CVARN LG A S +A+L+VA
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAI 109
Score = 86.0 bits (213), Expect = 7e-21
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
++P+ +V EP + C+ G+PEP I W KDGS + + RI + G L
Sbjct: 112 DDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL--DDKDERITIRGGKL-- 167
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ + +D+G Y CV N +G S+ A L V
Sbjct: 168 --MITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 111 bits (280), Expect = 3e-29
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P + + PA + + PT L C +G + + W KDG + + + + GSL F
Sbjct: 7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVF 66
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
L + +D G Y C A G A S+ +
Sbjct: 67 LRP----QASDEGHYQCFAETPAGVASSRVISFRKTY 99
Score = 80.7 bits (199), Expect = 6e-18
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P+ + P + V + + T+ CK G P P + W + +S R + L
Sbjct: 309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS----GGRATVTDSGLVI 364
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + D G Y C A NE G + V
Sbjct: 365 KGVKN----GDKGYYGCRATNEHGDKYF-ETLVQV 394
Score = 76.9 bits (189), Expect = 2e-16
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 7/114 (6%)
Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA 174
+ + P + + T + C P ++K+G V+
Sbjct: 196 EYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNG 255
Query: 175 EIG---SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ L F + D GVY C N +G + + L V
Sbjct: 256 NPEDRITRHNRTSGKRLLFKTT----LPEDEGVYTCEVDNGVGKPQKHSLKLTV 305
Score = 66.9 bits (163), Expect = 4e-13
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 7/100 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDG-----SLVSAEIGSHRILLPA 185
P L+C + YP+P I W K + + P
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 160
Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
G+L+F V + +D Y C A+N ++
Sbjct: 161 GNLYFTI-VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI 199
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 111 bits (279), Expect = 7e-29
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 119 PLFPGVHGDGYRVPRITEHPAS-AVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG 177
P+ P + + + P IT+ A +V + + C+A G P P W ++ +
Sbjct: 4 PMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKD 63
Query: 178 SH-RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
+ +G+L G+ + G Y C ARN+ G A S L V+
Sbjct: 64 PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114
Score = 88.8 bits (220), Expect = 1e-20
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + P + ++ E L C+A+G P+P ++W +G + + + + ++ F
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFR 372
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + VY C NE G+ NA + V
Sbjct: 373 DT----QISSRAVYQCNTSNEHGYL-LANAFVSV 401
Score = 70.3 bits (172), Expect = 2e-14
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 122 PGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI 181
GV +S +V R L C A G P P I WYK G + + +
Sbjct: 213 RGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS--DKAKF 270
Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+L ++ + DSG Y+C+A N++G R ++ V
Sbjct: 271 ENFNKALRITNV----SEEDSGEYFCLASNKMGSIRHT-ISVRV 309
Score = 61.4 bits (149), Expect = 3e-11
Identities = 24/108 (22%), Positives = 33/108 (30%), Gaps = 8/108 (7%)
Query: 129 YRVPRITEHPASAV-VPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAG 186
+ P + V V P TL C G P P I W + G
Sbjct: 113 SKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQ-DKRVSQGHNG 171
Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELGFA--RSKNATLDVAGKISTA 232
L+F +++ +D Y C AR + TL V A
Sbjct: 172 DLYFSNVM--LQD-MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA 216
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 106 bits (267), Expect = 9e-29
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
PR T P + C+A G P P+I W K G VS + I GS L
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ-RFEVIEFDDGSGSVL 65
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ + D +Y CVA N +G S + L V +
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEI-SVSTRLTVLRE 101
Score = 87.6 bits (217), Expect = 2e-21
Identities = 34/101 (33%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI----LLPAGS 187
P I P VV R T+ C A G P+P I W+KD V + RI G+
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA 168
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L + +++D G Y CVA N G S A L V G
Sbjct: 169 L----QIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 106 bits (265), Expect = 9e-29
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
++ P V + +P LNC +G EP I+W KDG++V + + + FL
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
SL ++ D+G YWC + S+ L V G
Sbjct: 63 SLKSVERS-DAGRYWCQVEDGGETEISQPVWLTVEG 97
Score = 80.2 bits (198), Expect = 6e-19
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P T P VP + P L+C+A G PEP I W++ + + S +L G
Sbjct: 99 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--- 155
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
T S ++ C A N G A S+ AT+ +
Sbjct: 156 ---------TQSTMFSCEAHNLKGLASSRTATVHL 181
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 109 bits (274), Expect = 2e-28
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 132 PRITEHPASAVVP---RHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
P + P+ + P + L+C+ G P+P I W +G+ V R + GSL
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG-MDFRYSVVDGSL 64
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
+ D+G Y C+A N G S+ A L A
Sbjct: 65 LINNPNK---TQDAGTYQCIATNSFGTIVSREAKLQFAY 100
Score = 86.0 bits (213), Expect = 9e-20
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + V E CKA+G P+P W K+G + RI + G+L
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT---RDRIQIEQGTLNIT 352
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ D+G+Y CVA N+ G +A L V +
Sbjct: 353 IVNLS----DAGMYQCVAENKHGVI-FSSAELSVIAE 384
Score = 70.2 bits (172), Expect = 3e-14
Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 9/112 (8%)
Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVS 173
P L L Y + P + + L C A G P P I W + DG ++
Sbjct: 189 PTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIA 248
Query: 174 AEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
R G L + + D+G Y CVA N G +K L
Sbjct: 249 ---RKARRHKSNGILEIPNF----QQEDAGSYECVAENSRGKNVAK-GQLTF 292
Score = 61.8 bits (150), Expect = 2e-11
Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 131 VPRITEHPASAV-VPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
+ S V V R + L C E W + + + G+L
Sbjct: 101 LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD-NRRFVSQETGNL 159
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + + +D G Y CV N + + +
Sbjct: 160 YIAKV----EKSDVGNYTCVVTNTVTNHKVLGPPTPL 192
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 109 bits (273), Expect = 4e-28
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRIL 182
H G R P+ AV R LNC A+ P I+W KDG +++ + +
Sbjct: 14 HHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQ 73
Query: 183 LPAGSLFFLSLVHGK-KDTDSGVYWCVAR-NELGFARSKNATLDVAGK 228
LP GSL +++H + D G+Y C A + G S+ A + VAG
Sbjct: 74 LPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP 121
Score = 84.9 bits (210), Expect = 2e-19
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 5/107 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
R S + L C+ G P P I W K+ ++ G R+ +LP+G+L
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQI 181
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATDCSF 237
L + DSGVY C ARN A + + F
Sbjct: 182 SRL----QPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYF 224
Score = 83.7 bits (207), Expect = 6e-19
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P HP++ C G P P + W K+G +V + ++ +L L
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIP--SDYFQIVGGSNLRIL 370
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+V +D G Y CVA NE G A+S A L V
Sbjct: 371 GVV----KSDEGFYQCVAENEAGNAQSS-AQLIV 399
Score = 77.6 bits (191), Expect = 7e-17
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
+R + P++ + + L C GYP P W + ++ LL +L
Sbjct: 219 HRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLR-SKKYSLLGGSNL 277
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ D DSG Y CV + + +A L V
Sbjct: 278 LISNV----TDDDSGTYTCVVTYKNENISA-SAELTV 309
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 108 bits (271), Expect = 7e-28
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 132 PRITEHPASAVVPRH---EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
P E PA + P E TL C+A P W +G+ + R L AG L
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMG-PDSRYRLVAGDL 63
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
+ V D+G Y CVA N G S+ A+L
Sbjct: 64 VISNPVK---AKDAGSYQCVATNARGTVVSREASLRFGF 99
Score = 84.1 bits (208), Expect = 4e-19
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + +C A G P P + W +DG +++ +RI + G L F
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS---QNRIEVSGGELRFS 351
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
LV DSG+Y CVA N+ G +A L V
Sbjct: 352 KLVLE----DSGMYQCVAENKHGTV-YASAELTV 380
Score = 67.2 bits (164), Expect = 3e-13
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
+ PA + TL C A G P P+I+W K ++ + L L
Sbjct: 208 SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-----KWLSSEPLLHIQ 262
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ D G Y C A N G + + +
Sbjct: 263 NV----DFEDEGTYECEAENIKGRDTYQ-GRIII 291
Score = 62.2 bits (151), Expect = 1e-11
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 7/92 (7%)
Query: 131 VPRITEHPASAV-VPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGS 187
+ + V + C YP W + R G+
Sbjct: 100 LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 159
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219
L+ + +D G Y C A + + F
Sbjct: 160 LYIAKT----EASDLGNYSCFATSHIDFITKS 187
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 106 bits (266), Expect = 3e-27
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 130 RVPRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
+ P + P + + + CKA G P P I W + ++ R + G L
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 189 FFLSLVH--GKKDTDSGVYWCVARNELGFARSKNATLDVA 226
F +++ + VY C+ARN+ G S++ +
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAV 101
Score = 78.1 bits (192), Expect = 5e-17
Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + V P C+ G P + W KDG I L
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK---------AIGHSESVLRIE 358
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
S+ D G+Y C RN+ A +A L +
Sbjct: 359 SVKKE----DKGMYQCFVRNDRESA-EASAELKLG 388
Score = 68.4 bits (167), Expect = 1e-13
Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 8/117 (6%)
Query: 112 KYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSL 171
+ L + +L C A G+P P WYK
Sbjct: 193 RLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEG 252
Query: 172 V---SAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
A + + R+ +G+L DSG Y CV N +G + L V
Sbjct: 253 TTRKQAVVLNDRVKQVSGTLIIKDA----VVEDSGKYLCVVNNSVGGESVE-TVLTV 304
Score = 56.5 bits (136), Expect = 1e-09
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 9/100 (9%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGY---PEPRIEWYKDGS---LVSAEIGSHRILLPA 185
V R + C + + W+ D AE ++LP+
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163
Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
G L + +D Y C ++ L +AT
Sbjct: 164 GELHIREVG--PED-GYKSYQCRTKHRLTGETRLSATKGR 200
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 98.9 bits (247), Expect = 5e-27
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
PR + P + + ++ K G P P + WY +G V ++ H++++ L L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD-DLHKMIVSEKGLHSL 64
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ + +D+G Y CVA+N G A + LDV K
Sbjct: 65 -IFEVVRASDAGAYACVAKNRAGEA-TFTVQLDVLAK 99
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 105 bits (262), Expect = 5e-26
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P + P + + + CKA G P P I W + ++ R + G L F
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVF 98
Query: 191 LSLV--HGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
+++ + VY C+ARN+ G S++ +
Sbjct: 99 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAV 136
Score = 86.1 bits (213), Expect = 2e-19
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE----IGSHRILLPAGS 187
PR P + + CKADG+P+P++ W K E S I + G+
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGT 774
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L ++ + T+ G Y C A N +G S + V
Sbjct: 775 LHVDNI----QKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 80.4 bits (198), Expect = 2e-17
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
Y +P I + + E + C GYP I W +D + I + + P G+L
Sbjct: 525 YGLPYIRQ-MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALP--INRKQKVFPNGTL 581
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ +++D Y CVA+N+ G++ + + V
Sbjct: 582 IIENVE---RNSDQATYTCVAKNQEGYSARGSLEVQV 615
Score = 79.2 bits (195), Expect = 4e-17
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 14/100 (14%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + V P C+ G P + W KDG + RI
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRI---------- 393
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
K D G+Y C RN+ A + +A L + G+
Sbjct: 394 ---ESVKKEDKGMYQCFVRNDRESAEA-SAELKLGGRFDP 429
Score = 75.7 bits (186), Expect = 5e-16
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL-------LP 184
P I + + L C A G P P I W DG ++ +++
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN-DRYQVGQYVTVNGDV 488
Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L S+ D G+Y C+A++++G A +A L+V G
Sbjct: 489 VSYLNITSV----HANDGGLYKCIAKSKVGVAEH-SAKLNVYGL 527
Score = 70.7 bits (173), Expect = 3e-14
Identities = 26/115 (22%), Positives = 36/115 (31%), Gaps = 10/115 (8%)
Query: 116 PSLPLFPGVHGDGYRVPRITEH--PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV- 172
+ VP++ L C A GYP P WYK
Sbjct: 231 ATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTT 290
Query: 173 --SAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
A + + R+ +G+L DSG Y CV N +G + L V
Sbjct: 291 RKQAVVLNDRVKQVSGTLIIKDA----VVEDSGKYLCVVNNSVGGESVE-TVLTV 340
Score = 65.0 bits (158), Expect = 2e-12
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 132 PRITEH-PASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLV--SAEIGSHRILLPAGS 187
PRI + TL+C G P I+W DG + I + R+
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV 678
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L ++ + + +G + C ARN G L+V
Sbjct: 679 LTIEAV----EASHAGNFTCHARNLAGHQ-QFTTPLNV 711
Score = 58.8 bits (142), Expect = 3e-10
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 9/97 (9%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKA---DGYPEPRIEWYKDGSLV---SAEIGSHRILLPA 185
V R + C + W+ D AE ++LP+
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 198
Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNAT 222
G L + G +D Y C ++ L +AT
Sbjct: 199 GELHIREV--GPED-GYKSYQCRTKHRLTGETRLSAT 232
Score = 28.4 bits (63), Expect = 2.3
Identities = 3/15 (20%), Positives = 5/15 (33%)
Query: 200 TDSGVYWCVARNELG 214
++ VA G
Sbjct: 9 KWLMLFAAVALIACG 23
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 99.0 bits (247), Expect = 6e-26
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P IT + E T C + YP+P I W ++ L+ + I L L
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTIL 67
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
S+ +D+D G+Y C A N +G A L V K
Sbjct: 68 SV----EDSDDGIYCCTANNGVGGAVESCGALQVKMK 100
Score = 88.6 bits (220), Expect = 5e-22
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P+IT P + + L C G P+P + W K S + S +L +GSL
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRE--NSRIAVLESGSL--- 155
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+H + D+G Y CVA+N LG A SK L+V
Sbjct: 156 -RIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 96.3 bits (240), Expect = 7e-26
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + P V + ++CK G P P + W DG V + +H++L+ + L
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD-SAHKMLVRENGVHSL 68
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ D+G+Y C+A N G + L VA K
Sbjct: 69 IIEPVTSR-DAGIYTCIATNRAGQNSF-SLELVVAAK 103
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 98.3 bits (245), Expect = 1e-25
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P E + V TL CK G+P+P ++WY+ G + A+ +RI G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ D D+ VY A N+ G S A+L+V
Sbjct: 65 IIASVTDD-DATVYQVRATNQGGSV-SGTASLEV 96
Score = 86.3 bits (214), Expect = 5e-21
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
+P+ E + R E ++ G P+P I W K L+ H ++ S
Sbjct: 103 HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN--NGHYQVIVTRSFT 160
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L +G + D+G Y A+N G + LDV
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFGIDQK-TVELDV 195
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 100 bits (250), Expect = 2e-25
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
PR + P + + C+A G P+PR+ W K G V+++ I + L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVL 65
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ + D VY CVA+N +G +A L V +
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITV-HAKLTVLRE 101
Score = 89.1 bits (221), Expect = 2e-21
Identities = 36/95 (37%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
P I P VV R T+ C A G P+P I W+KD V + RI L +G+L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI 168
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
S ++TD G Y CVA N G S A L V
Sbjct: 169 ESS----EETDQGKYECVATNSAGVRYSSPANLYV 199
Score = 74.9 bits (184), Expect = 4e-16
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
PR + P S + + C A G P P ++W + ++ + + L
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLT---PEDDMPVGRNVLELT 262
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ DS Y CVA + LG + A + V
Sbjct: 263 DV------KDSANYTCVAMSSLGVIEAV-AQITV 289
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 96.1 bits (239), Expect = 1e-24
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
+IT +P S V + L C+A G+P + +W+K + L F
Sbjct: 19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG--------NTSELIFN 70
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
++ D+G Y C N F S+ + LDV
Sbjct: 71 AV----HVKDAGFYVCRVNNNFTFEFSQWSQLDVC 101
Score = 78.0 bits (192), Expect = 1e-17
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 12/111 (10%)
Query: 116 PSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE 175
V G +I P S + L C A G P P +W+K+ ++ E
Sbjct: 103 IPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE 162
Query: 176 IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
+ ++ +V G YWC N+ SK + +
Sbjct: 163 --TKKLY----------MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 201
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 98.7 bits (246), Expect = 7e-24
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP--AGSLF 189
P E EP TL CK DG PE RI WYK+ + + + ++++ SL
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSA-PAYKMQFKNNVASLV 64
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ H +D G Y C A N +G S +A L + +
Sbjct: 65 INKVDH----SDVGEYTCKAENSVGAVAS-SAVLVIKER 98
Score = 81.0 bits (200), Expect = 7e-18
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
PR + + E L +G + W+KD + E + + + ++ L
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRE-SDNIWISYSENIATL 536
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ ++G Y C +NE G ATL V
Sbjct: 537 QFSRAEPA-NAGKYTCQIKNEAGTQ-ECFATLSV 568
Score = 79.5 bits (196), Expect = 2e-17
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + P + L C+ G P ++ W+KD + + G ++ L +
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS--GKKYKIMSENFLTSI 442
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+++ D G Y C A N++G + ++ +
Sbjct: 443 HILNVDSA-DIGEYQCKASNDVGSD-TCVGSITL 474
Score = 77.2 bits (190), Expect = 2e-16
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL-PAGSLFF 190
P P C+ +G ++ WYKDG L+ + + +L
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQI 161
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L + G Y C A N LG A S +A L ++
Sbjct: 162 LQT----DQSHVGQYNCSASNPLGTASS-SAKLTLSEH 194
Score = 77.2 bits (190), Expect = 2e-16
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 129 YRVPRITEHPA-SAVVPRHEPTTLNCKADGYPEPRIEWYKDGS-LVSAEIGSHRILLPAG 186
PR + S +V + E T CK G PE ++ WYKD + + + +
Sbjct: 288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 347
Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L +L DSG Y C A N G A S + +L V
Sbjct: 348 VLEMYNL----SVEDSGDYTCEAHNAAGSASS-STSLKVKEP 384
Score = 76.0 bits (187), Expect = 4e-16
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLF 189
P P S + E T C G +I W KD + G++++ L +L
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG-GNYKMTLVENTATLT 256
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L + D+G Y C A N G A L V
Sbjct: 257 VLKV----TKGDAGQYTCYASNVAGKDSCS-AQLGVQEP 290
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 91.0 bits (226), Expect = 9e-24
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I + P + V L+C A G P P I W KDG LVS + S L G L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ-DSRIKQLENGVLQIR 67
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
K D+G Y C+A G A + +A ++V
Sbjct: 68 YA----KLGDTGRYTCIASTPSGEA-TWSAYIEVQEF 99
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 89.3 bits (222), Expect = 3e-23
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P V + ++ + G P+P + W ++ V + G L L
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPD-QRRFAEEAEGGLCRL 64
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
++ ++ D+G Y C A NE G + + A L+V G+
Sbjct: 65 RILAAERG-DAGFYTCKAVNEYGARQCE-ARLEVRGE 99
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 87.9 bits (218), Expect = 8e-23
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 13/95 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
++ P V TL C+ P P+I W KDG + L P+ L
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP--------LPPSPVLILP 62
Query: 192 SLVHGKKDTDSGVYWCVARNELGFAR-SKNATLDV 225
+ D G Y CVA + + S+ ++ +
Sbjct: 63 EI----GPQDQGTYSCVATHSSHGPQESRAVSISI 93
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 87.1 bits (216), Expect = 2e-22
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I + PA+ + L CKA G P P I W K+G + G+L
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR-DPRATIQEQGTLQIK 67
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+L + +D+G Y CVA + G S +A LDV
Sbjct: 68 NL----RISDTGTYTCVATSSSGET-SWSAVLDV 96
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 89.8 bits (223), Expect = 2e-22
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+ ++T + + E C A G PE + G + + ++ G
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST--QRVVVQKEGVRSR 59
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L ++ D+G+Y C A + G + L++ K
Sbjct: 60 L-TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK 96
Score = 77.5 bits (191), Expect = 8e-18
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
E + + E + C+ P P + W V+ + +L +L L
Sbjct: 97 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 156
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ +D G+Y C R E + V
Sbjct: 157 NINK----SDEGIYRCEGRVEAR-GEIDFRDIIV 185
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 85.1 bits (211), Expect = 1e-21
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
+I P S + L C A G P P +W+K+ ++ E
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE--------TKKLYMVP 55
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
+ G YWC N+ SK + +
Sbjct: 56 YV----DLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 89.9 bits (223), Expect = 1e-21
Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+ ++T + + E C A G PE + G + + ++ G
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIS--TQRVVVQKEGVRSR 61
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
L++ + + D+G+Y C A + G + L++ K++
Sbjct: 62 LTIYNANIE-DAGIYRCQATDAKGQTQEATVVLEIYQKLT 100
Score = 79.9 bits (197), Expect = 5e-18
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
Y+ E + + E + C+ P P + W V+ + +L +L
Sbjct: 96 YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 155
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L++ +D G+Y C R E + +
Sbjct: 156 QILNI----NKSDEGIYRCEGRVEARGEIDFRDIIVI 188
Score = 71.4 bits (175), Expect = 6e-15
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 132 PRIT--EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
P I+ + +A R E T +C+A G PEP I W+++G L+ E + + L
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-ENEKYILKGSNTELT 251
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++++ +D G Y C A N+ G A L V
Sbjct: 252 VRNIIN----SDGGPYVCRATNKAGEDEK-QAFLQV 282
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 87.8 bits (218), Expect = 1e-21
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I + E L+C+ G P P I+WY+ G + + G L
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQ--SRKYKMSSDGRTHTL 65
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+++ +++ D GVY C+A NE+G + ++ L +
Sbjct: 66 TVMTEEQE-DEGVYTCIATNEVGEVET-SSKLLL 97
Score = 75.1 bits (185), Expect = 6e-17
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 6/100 (6%)
Query: 132 PRITEH---PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
P+ L+ G P P + W+ L+ + + +
Sbjct: 101 PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLL--QNSENITIENTEHY 158
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L + + ++ T +G Y N G + +++ K
Sbjct: 159 THLVMKNVQRKTHAGKYKVQLSNVFGTVDA-ILDVEIQDK 197
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 84.3 bits (209), Expect = 2e-21
Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I V KA G P P W KDG ++ G L FFL
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ--GGKYKLSEDKGGFFL 64
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
+H +DSG+Y C +N G S L +
Sbjct: 65 -EIHKTDTSDSGLYTCTVKNSAGSVSSS-CKLTIKA 98
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 89.7 bits (222), Expect = 5e-21
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 5/99 (5%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
+ A+ V TL D W S ++ + S+
Sbjct: 47 QSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV 106
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L + T +G Y ++E + T+ +
Sbjct: 107 ILKMTE----TQAGEYLLFIQSEATNY-TILFTVSIRNT 140
Score = 73.2 bits (179), Expect = 3e-15
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 8/103 (7%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
T ++ L C ++ PEP +EW S + ++
Sbjct: 138 RNTLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
+ C ARNELG ++ T+D+ T
Sbjct: 197 VL-------HELFGTDIRCCARNELGRECTRLFTIDLNQTPQT 232
Score = 70.1 bits (171), Expect = 4e-14
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 8/98 (8%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
T + ++E + + YP+ R W + L S+
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFP---CEQKGLDNGYSISK 382
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
G Y A N+ +K TL++
Sbjct: 383 FCN----HKHQPGEYIFHAENDDAQF-TKMFTLNIRSG 415
Score = 63.2 bits (153), Expect = 7e-12
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 16/106 (15%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSA-------EIGSHRIL 182
+ EP + CKA + W + + ++R +
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286
Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ F S+ D+G Y C + ++A + + K
Sbjct: 287 IRILFAFVSSV----ARNDTGYYTCSSSKHPS----QSALVTIVEK 324
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 85.5 bits (212), Expect = 7e-21
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P T+ S VV T G+P P + W++DG ++S + + L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
++ K +SG Y A N G A S A L V + +
Sbjct: 66 TIPAVTKA-NSGRYSLKATNGSGQATST-AELLVKAETA 102
Score = 80.5 bits (199), Expect = 7e-19
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + S V + L + G P P +++Y+DG+ + + + G L+ L
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS--SLDFQISQEGDLYSL 161
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + DSG Y A N +G A S A L V
Sbjct: 162 LIAEAYPE-DSGTYSVNATNSVGRATST-AELLV 193
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 82.8 bits (205), Expect = 1e-20
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P IT + + E ++C A G P P+I W+KD + S +L +
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE--DSGIVLKDGNRNLTI 68
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
V + D G+Y C A + LG A+ + A + G
Sbjct: 69 RRV---RKEDEGLYTCQACSVLGCAKVE-AFFIIEG 100
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 84.8 bits (210), Expect = 2e-20
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+ E + + E + C+ P P + W V+ + +L +L
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L++ +D G+Y C R E + +
Sbjct: 62 LNI----NKSDEGIYRCEGRVEARGEIDFRDIIVI 92
Score = 76.7 bits (189), Expect = 1e-17
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+ + +A R E T +C+A G PEP I W+++G L+ E + + L
Sbjct: 98 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-ENEKYILKGSNTELTV 156
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ ++D G Y C A N+ G A L V
Sbjct: 157 RNI----INSDGGPYVCRATNKAGEDEK-QAFLQV 186
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 84.5 bits (209), Expect = 2e-20
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIG---SHRILLPAGSL 188
P IT H S + + CK+ GYP P W K + V EI ++ +
Sbjct: 93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY 152
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L++V+ + D G Y C A N +G A S + L V
Sbjct: 153 TELNIVNLQITEDPGEYECNATNSIGSA-SVSTVLRV 188
Score = 66.8 bits (163), Expect = 6e-14
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIE--WYKDGSLVSAEIGSHRILLPAGSLF 189
PRI + P TL C + W K+G ++A + +
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTA---TRKN-ASNMEYR 59
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ DSG Y CV + + NAT++V
Sbjct: 60 INKP----RAEDSGEYHCVY-HFVSAP-KANATIEV 89
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 86.3 bits (214), Expect = 2e-20
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG-SLVSAEIGSHRILLPAGSLFF 190
P P S + E T C G +I W KD + ++ +L
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L + D+G Y C A N G S +A L V
Sbjct: 66 LKV----TKGDAGQYTCYASNVAGKD-SCSAQLGV 95
Score = 80.2 bits (198), Expect = 4e-18
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + P + L C+ G P ++ W+KD + + G ++ L +
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS--GKKYKIMSENFLTSI 250
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+++ D G Y C A N++G ++ +
Sbjct: 251 HILNVDSA-DIGEYQCKASNDVGSYTC-VGSITL 282
Score = 77.5 bits (191), Expect = 4e-17
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 132 PRITEHPASA-VVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA--GSL 188
PR + + +V + E T CK G PE ++ WYKD + + R+ L
Sbjct: 99 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES-SKFRMSFVESVAVL 157
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+L DSG Y C A N G A S + +L V
Sbjct: 158 EMYNL----SVEDSGDYTCEAHNAAGSA-SSSTSLKV 189
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 81.2 bits (201), Expect = 5e-20
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL--PAGSLF 189
RI P S V E +C DG P P + W + G ++S H++ +
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS-ARHQVTTTKYKSTFE 73
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
S+ + +D G Y V N G ++ TL +
Sbjct: 74 ISSV----QASDEGNYSVVVENSEGKQEAE-FTLTI 104
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 83.3 bits (206), Expect = 5e-20
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYK-DGSLVSAEIGSHRILLPA-- 185
RV ++ P+ + E C+ G + I W+ +G +S ++
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 186 -GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
+L + D+G+Y CV E G + + K+
Sbjct: 61 SSTLTIYNA----NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM 102
Score = 79.9 bits (197), Expect = 1e-18
Identities = 19/94 (20%), Positives = 24/94 (25%), Gaps = 5/94 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P E + C P I W G V + I+L L
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 160
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ K TD G Y C R + V
Sbjct: 161 GI----KKTDEGTYRCEGRILAR-GEINFKDIQV 189
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 80.9 bits (200), Expect = 6e-20
Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P P V L C G P P + W K G ++A G+ L
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAA--SERLSFPADGAEHGL 71
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L D+GVY C ARN G A + A + V
Sbjct: 72 LLTAALPT-DAGVYVCRARNAAGEAYA-AAAVTV 103
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 83.4 bits (206), Expect = 6e-20
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P E P V + P L+C+A G PEP + W +D + + P SL
Sbjct: 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAV----PLATAPGHGPQRSLHV 162
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
L + + C A N G S+ AT+ V
Sbjct: 163 PGL------NKTSSFSCEAHNAKGVTTSRTATITVL 192
Score = 79.9 bits (197), Expect = 1e-18
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+P + R TL C+ P + W +DG ++ + +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 191 LSLVHGK------KDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+V + + +D+G Y C+ S+ + + G
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL 106
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 82.6 bits (204), Expect = 1e-19
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 131 VPRIT--EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
+P I+ + +A R E T +C+A G PEP I W+++G L+ + + L
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKGSNTEL 60
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ ++D G Y C A N+ G K A L V
Sbjct: 61 TVRNI----INSDGGPYVCRATNKAGED-EKQAFLQV 92
Score = 66.0 bits (161), Expect = 2e-13
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSH----RILL---- 183
P I + + + TL C A+G P P I W + + G RI +
Sbjct: 96 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 154
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ SL + K +DSG Y C A + +G K+ LD+
Sbjct: 155 GSSSLHIKDV----KLSDSGRYDCEAASRIGGH-QKSMYLDI 191
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 80.0 bits (198), Expect = 1e-19
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P+I E S V + + G P+P EWYK+G + P ++ L
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERS-DRIYWYWPEDNVCEL 64
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ + DS A N G S A L V K
Sbjct: 65 VIRDVTGE-DSASIMVKAINIAGETSSH-AFLLVQAK 99
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 80.0 bits (198), Expect = 1e-19
Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
PRIT S VP + T P ++WY +G + S + L
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQE--SSKIHYTNTSGVLTL 66
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
++ D DSG Y V N G A ATLDV G
Sbjct: 67 EILDCHTD-DSGTYRAVCTNYKGEASDY-ATLDVTGG 101
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 80.1 bits (198), Expect = 1e-19
Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + P T C+ G P+P+I W+KDG +S + + I L
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
D D G Y +A N G L V
Sbjct: 69 HTTASTLD-DDGNYTIMAANPQGRISCT-GRLMVQAV 103
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 79.3 bits (196), Expect = 2e-19
Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + V + L C G P PRI W +G + L
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQY--ARSTCEAGVAELHIQ 69
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ D G Y C+A N LG A + V
Sbjct: 70 DALP----EDHGTYTCLAENALGQVSCS-AWVTV 98
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 79.3 bits (196), Expect = 2e-19
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P+I P+ + + T+ C G P P + W G + ++ + L L
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ +K D G+Y NE G + + +
Sbjct: 66 IIMDVQKQ-DGGLYTLSLGNEFGSDSA-TVNIHI 97
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 85.1 bits (210), Expect = 3e-19
Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 5/96 (5%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
+ A+ V TL D W S ++ + S+
Sbjct: 47 QSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV 106
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L + T +G Y ++E + T+ +
Sbjct: 107 ILKMTE----TQAGEYLLFIQSEATNY-TILFTVSI 137
Score = 73.2 bits (179), Expect = 3e-15
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 8/100 (8%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
T ++ L C ++ PEP +EW S + ++
Sbjct: 138 RNTLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ C ARNELG ++ T+D+
Sbjct: 197 VL-------HELFGTDIRCCARNELGRECTRLFTIDLNQT 229
Score = 70.9 bits (173), Expect = 2e-14
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
T + ++E + + YP+ R W E + L S+
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE---QKGLDNGYSISKFC 384
Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
G Y A N+ +K TL++
Sbjct: 385 N----HKHQPGEYIFHAENDDAQF-TKMFTLNI 412
Score = 64.7 bits (157), Expect = 3e-12
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 17/111 (15%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK--------DGSLVSAEIGSHRILL 183
P++ + +C +DGYP P W K +
Sbjct: 416 PQVLAEA--------SASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRK 467
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATD 234
G S ++ + + C A N LG + + L+ G D
Sbjct: 468 VFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTS-CETILLNSPGPFPFIQD 517
Score = 56.6 bits (136), Expect = 1e-09
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 18/108 (16%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSA-------EIGSHR 180
+ P+ T + EP + CKA + W + + ++R
Sbjct: 227 NQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 181 ILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
++ F S+ D+G Y C + ++A + + K
Sbjct: 285 TMIRILFAFVSSV----ARNDTGYYTCSSSKHPS----QSALVTIVEK 324
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 81.2 bits (200), Expect = 5e-19
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEI--------GSHRIL 182
+ + VP +E L C G+ PR+EW GS + + R+
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK-NATLDV 225
+ + F S+ D+G Y C+ E G + + L V
Sbjct: 62 FSSSGITFSSV----TRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101
Score = 67.7 bits (165), Expect = 5e-14
Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 15/104 (14%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVS---------AEIGSHRI 181
P + V L C DG P W+KDG + S I
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 164
Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+G L F + DSG Y+C A+N G A + +
Sbjct: 165 DPKSGDLIFDPV----TAFDSGEYYCQAQNGYGTAMR-SEAAHM 203
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 78.6 bits (194), Expect = 5e-19
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P P S V + L C+ P P++ W ++ +V + L
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ K D+G Y A NE G LDV +
Sbjct: 76 LIKDVNKK-DAGWYTVSAVNEAGVTTCN-TRLDVTAR 110
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 80.8 bits (199), Expect = 7e-19
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI---------GSHRIL 182
+ +P + P L+C G+ PR+EW D + + R+
Sbjct: 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64
Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK-NATLDV 225
+ F S+ D+G Y C+ E G + + L V
Sbjct: 65 FLPTGITFKSV----TREDTGTYTCMVSEEGGNSYGEVKVKLIV 104
Score = 70.8 bits (173), Expect = 3e-15
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 14/103 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVS--------AEIGSHRIL 182
P + L C DG P W+KDG ++ S+ +
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 167
Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
G L F L +D+G Y C ARN G + + + +
Sbjct: 168 PTTGELVFDPL----SASDTGEYSCEARNGYGTPMT-SNAVRM 205
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 82.8 bits (204), Expect = 7e-19
Identities = 23/107 (21%), Positives = 33/107 (30%), Gaps = 13/107 (12%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCK-------ADGYPEPRIEWYKDGSLVSAEIG-SHRI 181
H EP L C A P + W+K+ S + R+
Sbjct: 17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76
Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
G+L+ L + DSG Y C RN + + L V
Sbjct: 77 WAQDGALWLLPALQE----DSGTYVCTTRNASYCDKM-SIELRVFEN 118
Score = 57.8 bits (139), Expect = 4e-10
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
L+ + +I+WYKD L+ + + L + D+G Y CV
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDV----ALEDAGYYRCVL 199
Query: 210 RNELGFARSKNATLDV 225
+ N T +
Sbjct: 200 TFAHE-GQQYNITRSI 214
Score = 50.1 bits (119), Expect = 2e-07
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 15/111 (13%)
Query: 127 DGYRVPRITEHPASAVVPRHEPTTLNCKA---DGYPEPRIEWYK-DGSLVSA-------- 174
+P I + T+ CK G P + W+ + + + +
Sbjct: 222 KEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVT 281
Query: 175 EIGSHRILLPAGSLFFLSL-VHGKKDTDSGV-YWCVARNELGFARSKNATL 223
E + + L D + + CV N L F + T+
Sbjct: 282 EGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ-TLRTTV 331
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 80.1 bits (197), Expect = 1e-18
Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEW-YKDGSLVSAEIGSHRILLPAGSLFF 190
++ H + P T+ C + +P P ++W +G + + ++
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARS 218
+++ CV +N+ A
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
Score = 40.4 bits (94), Expect = 2e-04
Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 20/102 (19%)
Query: 142 VVPRHEPTTLNC---KADGYPEPRIEWYKDG-SLVSAEIGSHRILLPA------------ 185
E TL + PE + W+K G IG +
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 186 --GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ FFL + G Y C + +K L V
Sbjct: 62 RSANTFFLVVTAANIS-HDGNYLCRMKLGETEV-TKQEHLSV 101
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 81.5 bits (201), Expect = 1e-18
Identities = 20/95 (21%), Positives = 26/95 (27%), Gaps = 5/95 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P E + C P I W G V + I+L L
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 160
Query: 192 SLVHGKKDTDSGVYWCVARNELGFAR-SKNATLDV 225
+ K TD G Y C R K+ + V
Sbjct: 161 GI----KKTDEGTYRCEGRILARGEINFKDIQVIV 191
Score = 78.8 bits (194), Expect = 1e-17
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYP-EPRIEWYK-DGSLVSAEIGSHRIL---LP 184
RV ++ P+ + E C+ G + I W+ +G +S ++
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
+ +L + D+G+Y CV E G + + K+
Sbjct: 61 SSTLTIYNA----NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM 102
Score = 71.8 bits (176), Expect = 4e-15
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA---EIGSHRILLPAGS 187
+ + +A + TL C ADG+PEP + W KDG + + H +
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 255
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L ++ D Y C+A N+ G + L V K
Sbjct: 256 LTIRNV----DKNDEAEYVCIAENKAGEQDAS-IHLKVFAK 291
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 80.3 bits (198), Expect = 2e-18
Identities = 30/109 (27%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 130 RVPRITE----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV--SAEIGSHRILL 183
R P T VP C A G P P + W K+G IG +++
Sbjct: 14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 73
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA 232
SL S+V +D G Y CV NE G LDV +
Sbjct: 74 QHWSLIMESVVP----SDKGNYTCVVENEYGSINH-TYHLDVVERSRHR 117
Score = 69.5 bits (170), Expect = 1e-14
Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 9/107 (8%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
R PA+A CK +P I+W K ++ G +
Sbjct: 117 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKH 176
Query: 190 FLSLVHGKKD--------TDSGVYWCVARNELGFARSKNATLDVAGK 228
+ D+G Y C N +G A +A L V K
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQ-SAWLTVLPK 222
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 82.9 bits (204), Expect = 2e-18
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P IT + + E ++C A G P P+I W+KD + + + +L
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED-SGIVLKDGNRNLTIR 725
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ + D G+Y C A + LG A A + G
Sbjct: 726 RV----RKEDEGLYTCQACSVLGCA-KVEAFFIIEGA 757
Score = 74.0 bits (181), Expect = 2e-15
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
VH + V + + E + K GYP P I+WYK+G + S+ +
Sbjct: 324 VHEKPF-VAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGI----PLESNHTIK 378
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR-SKNATLDVAGK 228
L + + + D+G Y + N + + S +L V
Sbjct: 379 AGHVLTIMEV----SERDTGNYTVILTNPISKEKQSHVVSLVVYVP 420
Score = 71.7 bits (175), Expect = 1e-14
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 124 VHGDGYRVPRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDG---SLVSAEIGSH 179
V GYR+ + P+ + + E LNC A I++ + ++ +
Sbjct: 216 VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 275
Query: 180 RILLPAGS---LFFLSLVHGK-KDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ +GS F +L +D G+Y C A + L + + V K
Sbjct: 276 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEK 327
Score = 69.4 bits (169), Expect = 7e-14
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+PR++ + + + C+ + ++W + +E G
Sbjct: 31 LPRLSIQKDILTIKANTTLQITCRG----QRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
+ D+G Y C R + D
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYR 122
Score = 60.5 bits (146), Expect = 8e-11
Identities = 22/114 (19%), Positives = 31/114 (27%), Gaps = 19/114 (16%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
R P IT P E +L C AD + WYK G +L
Sbjct: 548 TRGPEITLQPDMQPT-EQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNL 606
Query: 189 FFLSLVHGK-----------------KDTDSGVYWCVARNELGFARSKNATLDV 225
L ++ D G Y C+A++ R +
Sbjct: 607 DTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHC-VVRQL 659
Score = 59.0 bits (142), Expect = 2e-10
Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 35/128 (27%)
Query: 132 PRITEHPASA---VVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSA------------- 174
P+I E + TL C P P I WY A
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480
Query: 175 -----------------EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR 217
E+ ++ L G +S + + S +Y C A N++G
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG- 539
Query: 218 SKNATLDV 225
+ + V
Sbjct: 540 ERVISFHV 547
Score = 52.1 bits (124), Expect = 5e-08
Identities = 7/94 (7%), Positives = 21/94 (22%), Gaps = 5/94 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
+++ + C + G+
Sbjct: 129 VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGF--- 185
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + +G+ +C A+ +S + V
Sbjct: 186 -TIPSYMISYAGMVFCEAKINDESYQS-IMYIVV 217
Score = 28.6 bits (63), Expect = 2.4
Identities = 2/18 (11%), Positives = 4/18 (22%)
Query: 201 DSGVYWCVARNELGFARS 218
++ CV
Sbjct: 8 AVALWLCVETRAASVGLP 25
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 82.3 bits (203), Expect = 3e-18
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
S V + C+ + W+ + + ++ +L
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVS-PRLQLSNGNRTLTLF 169
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
++ D+ Y C +N + RS + L+V
Sbjct: 170 NV----TRNDTASYKCETQNPVSARRSDSVILNVL 200
Score = 76.5 bits (188), Expect = 3e-16
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 15/102 (14%)
Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
Y T P + E L+C A P + W+ +G
Sbjct: 200 LYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG----------TFQQSTQE 249
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFA-RSKNATLDVAGK 228
LF ++ +SG Y C A N R+ T+ V +
Sbjct: 250 LFIPNI----TVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287
Score = 74.6 bits (183), Expect = 1e-15
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 6/102 (5%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
+ S V + C+ + W+ +G + ++
Sbjct: 460 ITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVS-PRLQLSN 517
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+L ++ D+ Y C +N + RS TLDV
Sbjct: 518 GNRTLTLFNV----TRNDARAYVCGIQNSVSANRSDPVTLDV 555
Score = 74.2 bits (182), Expect = 2e-15
Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 15/97 (15%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
Y P + L+C + P P+ W +G L
Sbjct: 557 YGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ----------HTQVL 606
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
F + ++G Y C N + + +
Sbjct: 607 FIAKI----TPNNNGTYACFVSNLATGR-NNSIVKSI 638
Score = 71.5 bits (175), Expect = 1e-14
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 15/97 (15%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
Y T P+ +L+C A P + W DG I L
Sbjct: 379 YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDG----------NIQQHTQEL 428
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
F ++ + +SG+Y C A N S+ +
Sbjct: 429 FISNI----TEKNSGLYTCQANNSAS-GHSRTTVKTI 460
Score = 65.4 bits (159), Expect = 2e-12
Identities = 14/110 (12%), Positives = 22/110 (20%), Gaps = 21/110 (19%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVS-----------------AE 175
++T V + L WYK +
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60
Query: 176 IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
I+ P SL ++ D+G Y V
Sbjct: 61 YSGREIIYPNASLLIQNI----IQNDTGFYTLHVIKSDLVNEEATGQFRV 106
Score = 64.6 bits (157), Expect = 3e-12
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P IT S V + L C+ + W+ + + ++ +L L
Sbjct: 291 PFITS-NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVS-PRLQLSNDNRTLTLL 347
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
S+ D G Y C +NEL S L+V
Sbjct: 348 SV----TRNDVGPYECGIQNELSVDHSDPVILNV 377
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 75.2 bits (185), Expect = 7e-18
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 132 PRITE----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRILLPA 185
P T VP C A G P P + W K+G E IG +++
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
SL S+V +D G Y CV NE G + LDV
Sbjct: 65 WSLIMESVV----PSDKGNYTCVVENEYGSI-NHTYHLDV 99
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 78.0 bits (192), Expect = 9e-18
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 3/120 (2%)
Query: 106 KGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEW 165
G + + L + R + P + + L C G P P + W
Sbjct: 92 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 151
Query: 166 YKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
K+ ++ + AG + ++ DSG Y V +N+ G S + T+ V
Sbjct: 152 LKNEKALAQT-DHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETS-DFTVSV 208
Score = 53.7 bits (129), Expect = 4e-09
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 14/96 (14%)
Query: 140 SAVVPRHEPTTLNCKADGY----------PEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
S++ + A+G + ++ W +GS + G
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY--SDRVKTGVTGEQI 59
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+L + + D G Y + K L
Sbjct: 60 WLQINEPTPN-DKGKYVMELFDGKTGH-QKTVDLSG 93
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 76.4 bits (188), Expect = 9e-18
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P T+ V +CK +GYP+P + W+KD + V +I L
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYDEEGNCSL 100
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ D D Y C A N LG A A L V
Sbjct: 101 TISEVCGD-DDAKYTCKAVNSLGEATCT-AELLV 132
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 79.7 bits (196), Expect = 1e-17
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 8/101 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
V + L+C G P W KDG+ + S R+L+ L
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVP---SERVLVGPQRLQV 65
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
L+ H DSG Y C R + + A
Sbjct: 66 LNASH----EDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGD 102
Score = 77.0 bits (189), Expect = 9e-17
Identities = 32/103 (31%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 129 YRVPRITE----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE--IGSHRIL 182
P T VP C A G P P I W K+G E IG ++
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176
Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
SL S+V +D G Y CV N+ G R TLDV
Sbjct: 177 HQQWSLVMESVV----PSDRGNYTCVVENKFGSIRQ-TYTLDV 214
Score = 68.5 bits (167), Expect = 9e-14
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK----DGSLVSAEIGSHRILLPA 185
R PA+ +CK +P I+W K +GS V + + +L
Sbjct: 221 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKT 280
Query: 186 GSLFFLSLVHGK------KDTDSGVYWCVARNELGFARSKNATLDV 225
D+G Y C+A N +GF+ +A L V
Sbjct: 281 AGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH-SAWLVV 325
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 74.7 bits (183), Expect = 2e-17
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 127 DGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP--RIEWYKDGSLV---SAEIGSHRI 181
D + P+IT P + + C A + W D + E +H
Sbjct: 6 DDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65
Query: 182 LLPAGSLFFLSLVHGK--KDTDSGVYWCVARNELGFARSKNATLDV 225
+ + +++ + + T G Y CV N G + S A L +
Sbjct: 66 AQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 73.6 bits (181), Expect = 3e-17
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
S +V + L C+ I W +DG ++ S+R + +
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAE---SNRTRITGEEVEVQ 59
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA 232
V DSG+Y CV + G + +++V+ + +
Sbjct: 60 DSVP----ADSGLYACVTSSPSGSD-TTYFSVNVSDALPSG 95
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 77.9 bits (192), Expect = 4e-17
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P E + V TL CK G+P+P ++WY+ G + A+ +RI G L
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ D D+ VY A N+ G S A+L+V
Sbjct: 65 IIASVTDD-DATVYQVRATNQGGSV-SGTASLEV 96
Score = 75.6 bits (186), Expect = 2e-16
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
+P+ E + R E ++ G P+P I W K L+ + H ++ S
Sbjct: 103 HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLI--DNNGHYQVIVTRSFT 160
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L +G + D+G Y A+N G K LDVA
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDVADV 198
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 76.5 bits (188), Expect = 4e-17
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 132 PRITE----HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV--SAEIGSHRILLPA 185
P T VP C A G P P I W K+G IG ++
Sbjct: 12 PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 71
Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
SL S+V +D G Y CV N+ G R TLDV +
Sbjct: 72 WSLVMESVVP----SDRGNYTCVVENKFGSIRQ-TYTLDVLER 109
Score = 68.0 bits (166), Expect = 5e-14
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEI---GSHRILLPAGSL 188
PA+ +CK +P I+W K + +++ G+ + + +
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174
Query: 189 FFLSLVHGK------KDTDSGVYWCVARNELGFARSKNATLDV 225
+ + D G Y C A N +G A L V
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA-FWLSV 216
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 72.7 bits (179), Expect = 4e-17
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 4/94 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P+I + L G P+P W S + ++ S +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAAL--APELLVDAKSSTTSI 60
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
K+ DSG Y +NELG + + V
Sbjct: 61 FFPSAKRA-DSGNYKLKVKNELGEDEA-IFEVIV 92
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 74.2 bits (182), Expect = 2e-16
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
I + TL C A G P P I W K + + + I L
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPS---TAEISTSGAVLKIF 170
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
++ + D G+Y C A N G + + A + V
Sbjct: 171 NI----QLEDEGIYECEAENIRGKDKHQ-ARIYVQA 201
Score = 69.9 bits (171), Expect = 7e-15
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 7/103 (6%)
Query: 126 GDGYRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPR-IEWYKDGSLVSAEIGSHR-IL 182
G GY P E V + L C +P+ W + V + R +
Sbjct: 3 GSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS 62
Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
G+L+ ++ + +D G Y C + + + +
Sbjct: 63 QTNGNLYIANV----EASDKGNYSCFVSSPSITKSVFSKFIPL 101
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 71.2 bits (175), Expect = 2e-16
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRI-LLPAGSLF 189
++ AV CK + Y + ++ WY + S + + +
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLEN---SEKYEITYEDGVA 58
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
L + K D G Y C N+ G S A L V G
Sbjct: 59 ILYVKDITKL-DDGTYRCKVVNDYGEDSSY-AELFVKG 94
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 70.9 bits (174), Expect = 3e-16
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 20/106 (18%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPA------ 185
P IT + G P+P ++W+ +G++++ S I
Sbjct: 5 PTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNE---SKYICTKIHVTNHT 58
Query: 186 ---GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
G L + H ++G Y +A+NE G K + G
Sbjct: 59 EYHGCLQLDNPTH----MNNGDYTLIAKNEYGKD-EKQISAHFMGW 99
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 74.9 bits (184), Expect = 5e-16
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 3/120 (2%)
Query: 106 KGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEW 165
G + + L + R + P + + L C G P P + W
Sbjct: 197 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 256
Query: 166 YKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
K+ ++ + AG + ++ DSG Y V +N+ G S + T+ V
Sbjct: 257 LKNEKALA-SDDHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETS-DFTVSV 313
Score = 74.2 bits (182), Expect = 8e-16
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P E+ S V L CK E I WYKD +S + G
Sbjct: 8 PHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV---DEKHDFKDGI-CT 62
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L + K D+G+Y + +++ G +S+ L
Sbjct: 63 LLITEFSKK-DAGIYEVILKDDRGKDKSR-LKLVDEAF 98
Score = 58.0 bits (140), Expect = 3e-10
Identities = 13/112 (11%), Positives = 28/112 (25%), Gaps = 16/112 (14%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADG----------YPEPRIEWYKDGSLVSAEIGSHR 180
+ + + A+G + ++ W +GS + S R
Sbjct: 98 FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY---SDR 154
Query: 181 I-LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
+ G +L + + D G Y + + L
Sbjct: 155 VKTGVTGEQIWLQINEPTPN-DKGKYVMELFDGKTGHQK-TVDLSGQAYDEA 204
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 72.4 bits (177), Expect = 5e-16
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGS----HRILL 183
+ PR+ +S + E L CK++ P WYK + + +
Sbjct: 81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 140
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ L + + + D G Y C + G ++ TL V
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI-ITLRV 181
Score = 52.0 bits (124), Expect = 1e-08
Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 16/90 (17%)
Query: 141 AVVPRHEPTTLNCKADGYPEPRIE--WYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKK 198
V L C + W K G ++ + LP F
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA------LPGQKTEFKVD----S 57
Query: 199 DTDSGVYWCVARNELGFARSKNATLDVAGK 228
D G Y CV E A + + G
Sbjct: 58 DDQWGEYSCVFLPE----PMGTANIQLHGP 83
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 74.0 bits (181), Expect = 8e-16
Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 136 EHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIG-SHRILLPAGSLFFLSL 193
E V +E C + I WYKD S + RI L+F+
Sbjct: 10 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 69
Query: 194 VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
DSG Y+CV RN R +
Sbjct: 70 KVE----DSGHYYCVVRNSSYCLRI-KISAKF 96
Score = 58.2 bits (140), Expect = 3e-10
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 12/103 (11%)
Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE----------IGSHR 180
P I + V L C G W +GS++ + + +
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268
Query: 181 ILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
+ + L++ + + C A+N G + L
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQL 310
Score = 55.5 bits (133), Expect = 2e-09
Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 15/108 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNC------KADGYPEPRIEWYKDGSLVSAEIGSHRILLPA 185
+ +P L C K + P+++WYKD + + +
Sbjct: 104 CYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD--NIHFSGVK 161
Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELG---FARSKNATLDVAGKIS 230
L +++ + G Y C A + ++ +
Sbjct: 162 DRLIVMNV----AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK 205
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 68.7 bits (168), Expect = 2e-15
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
+ S +V + L C+ I W +DG + S+R + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVE---SNRTRITGEEVEVR 65
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ DSG+Y CV + G + +++V
Sbjct: 66 DSIP----ADSGLYACVTSSPSGSD-TTYFSVNV 94
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 68.9 bits (169), Expect = 2e-15
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P+I + P V E L K G W K + H + + + L
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE--SEHMKVENSENGSKL 65
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+++ +++ G Y + N+LG ++ L V K
Sbjct: 66 TILAARQE-HCGCYTLLVENKLGSRQA-QVNLTVVDK 100
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 72.9 bits (179), Expect = 3e-15
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P+ + P ++C P I W +D ++ A+ ++ G L
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ D D G Y C A N +G + L +A
Sbjct: 161 E-IAPTSDNDFGRYNCTATNHIGTR-FQEYILALADV 195
Score = 69.8 bits (171), Expect = 4e-14
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI--------LL 183
P I + + + TL C A+G P P I W + + G +
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ SL + K +DSG Y C A + +G K+ LD+
Sbjct: 61 GSSSLHIKDV----KLSDSGRYDCEAASRIGGH-QKSMYLDI 97
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 71.6 bits (175), Expect = 4e-15
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 132 PRITEH--PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
PR+ E P + P + T C+A G P P ++ KDG+ LP G
Sbjct: 184 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP----------LPIGESV 233
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ G Y C AR+ G ++ T++V
Sbjct: 234 TVTR------DLEGTYLCRARSTQG-EVTREVTVNV 262
Score = 46.2 bits (109), Expect = 2e-06
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 18/100 (18%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
Y P V T+ C+A PR + +G ++LL A
Sbjct: 96 YSFPAPNVILTKPEVSEGTEVTVKCEA----HPRAKVTLNGVPAQPLGPRAQLLLKA--- 148
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELG---FARSKNATLDV 225
+ + + C A E+ +++ L V
Sbjct: 149 --------TPEDNGRSFSCSATLEVAGQLIHKNQTRELRV 180
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 68.1 bits (166), Expect = 9e-15
Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 19/125 (15%)
Query: 123 GVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL 182
G+ G + + P S L+C+A G P P I+W+ +G
Sbjct: 13 GLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ----GPNDICSQ 68
Query: 183 LPAGSLFFLSLVHGKKDT--------------DSGVYWCVARNELGFARSKNATLDVAGK 228
L G+ +H D+G Y C A N+ V
Sbjct: 69 LWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRN-HLTRAPRVKWV 127
Query: 229 ISTAT 233
+ A
Sbjct: 128 RAQAV 132
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 67.1 bits (164), Expect = 1e-14
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
PR+ + + G P P + W +G + H G +
Sbjct: 9 PRVVSLEEPELR---LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65
Query: 192 SLV-HGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L+ + ++G Y +A+N LG A ++ +
Sbjct: 66 CLLFNKPTHYNNGNYTLIAKNPLGTA-NQTINGHFLKE 102
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 71.4 bits (174), Expect = 1e-14
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 19/96 (19%)
Query: 132 PRITE--HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
PR+ E P + P + T C+A G P P ++ KDG+ LP G
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP----------LPIGESV 418
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ G Y C AR+ G ++ T++V
Sbjct: 419 TVTR------DLEGTYLCRARSTQGEV-TREVTVNV 447
Score = 48.7 bits (115), Expect = 6e-07
Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 11/92 (11%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL 193
+ P+ ++PR + C + L + LL G+ +
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIET--PL------PKKELLLPGNNRKVYE 53
Query: 194 VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + C + + L V
Sbjct: 54 LSNV--QEDSQPMCYSNCP-DGQSTAKTFLTV 82
Score = 47.9 bits (113), Expect = 1e-06
Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 18/100 (18%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
Y P V T+ C+A + + P G
Sbjct: 281 YSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQ--------------PLGPR 326
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELG---FARSKNATLDV 225
L L +D + + C A E+ +++ L V
Sbjct: 327 AQLLLKATPED-NGRSFSCSATLEVAGQLIHKNQTRELRV 365
Score = 47.6 bits (112), Expect = 1e-06
Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 24/119 (20%)
Query: 99 CNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG- 157
C + L Y P R+ P + P + TL C+ +G
Sbjct: 69 CPDGQSTAKTFLTVYWTP---------------ERVELAPLPSWQPVGKNLTLRCQVEGG 113
Query: 158 YPEPR--IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214
P + + + E + PA + + +D + C +L
Sbjct: 114 APRANLTVVLLRGEKELKRE---PAVGEPAEVTTTVLVR---RDHHGANFSCRTELDLR 166
Score = 40.2 bits (93), Expect = 3e-04
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 13/113 (11%)
Query: 117 SLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG---YPEPRIEWYKDGSLVS 173
S P P++ V+ T+ C DG E ++ ++
Sbjct: 177 SAPYQLQTFVLPATPPQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233
Query: 174 AEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA-RSKNATLDV 225
+ A + ++ D G LG + T+ +
Sbjct: 234 PTVTYGNDSFSAKASVSVTA------EDEGTQRLTCAVILGNQSQETLQTVTI 280
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 67.9 bits (166), Expect = 4e-14
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P++ + P + + C+ YP I W++DG L+ + S+ + S +L
Sbjct: 20 PKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYL 78
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
V + D G Y C A N +G S L A
Sbjct: 79 E-VTPDSENDFGNYNCTAVNRIGQE-SLEFILVQADT 113
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 68.8 bits (168), Expect = 5e-14
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-- 181
V+ P+I P+ V R E + C A K G +
Sbjct: 179 VNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQD 238
Query: 182 --LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+L ++ D+G+Y CVA N++G + V
Sbjct: 239 NYYKKVRALSLNAV----DFQDAGIYSCVASNDVGTR-TATMNFQV 279
Score = 65.4 bits (159), Expect = 9e-13
Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 13/96 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I VV E TL C ++G +EW S + P +L
Sbjct: 5 PVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPIS----PYWTLDPESPGSTLTTR 56
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
+ ++G Y C + A S L V
Sbjct: 57 NA----TFKNTGTYRCTELEDPM-AGSTTIHLYVKD 87
Score = 60.7 bits (147), Expect = 4e-11
Identities = 13/100 (13%), Positives = 22/100 (22%), Gaps = 6/100 (6%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
V + L C + + ++G + P
Sbjct: 92 WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR-KTVYFFSPWRGF---- 146
Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA 232
++ K DS Y C + S L V
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 66.2 bits (161), Expect = 2e-13
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 7/95 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P T L C+ +G + EW K + + + +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP-TPWLAEMTSPVISV 180
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ SG Y C +N +G LDV
Sbjct: 181 KNA----SSEYSGTYSCTVQNRVGSD-QCMLRLDV 210
Score = 47.8 bits (113), Expect = 6e-07
Identities = 26/126 (20%), Positives = 35/126 (27%), Gaps = 34/126 (26%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEP----RIEWYKDGSLVS---------------- 173
IT + E L CK PE IEW S
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 174 ---------AEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLD 224
S+ + S+ +L + +D G Y C + G A +K L
Sbjct: 63 NYYPDLKGRVHFTSNDVKSGDASINVTNL----QLSDIGTYQCKVKKAPGVA-NKKFLLT 117
Query: 225 VAGKIS 230
V K S
Sbjct: 118 VLVKPS 123
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 63.3 bits (154), Expect = 2e-13
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 11/96 (11%)
Query: 132 PRITEH-PASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
+T S V T C A P + W + + R + G L
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHN----GKLPSRAMDFNGILT 65
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ + +D+G Y C N ATL V
Sbjct: 66 IRNV----QPSDAGTYVCTGSNMFAMD-QGTATLHV 96
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 67.5 bits (164), Expect = 2e-13
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + +A V + L C+ +G + W SA + LP+ L
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGG-LPSLGLTLA 217
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ D + C A N++G A + ++V
Sbjct: 218 NVTS---DLNRKNVTCWAENDVGRA-EVSVQVNV 247
Score = 60.1 bits (145), Expect = 7e-11
Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 13/102 (12%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV--------SAEIGSHRILL 183
+ DG P P + W +GS++ + +
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 306
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
G L H ++G Y +A N G A S +
Sbjct: 307 RHGCLRLNQPTH----VNNGNYTLLAANPFGQA-SASIMAAF 343
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 66.9 bits (163), Expect = 3e-13
Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 4/103 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P E + C P+ W KD + G+ +
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTED--SPRLEVESKGNKTKM 60
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATD 234
+ D D G+Y C + G A S + ++ +
Sbjct: 61 TFKDLGMD-DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102
Score = 62.7 bits (152), Expect = 8e-12
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P E S V L CK E I WYKD +S + H +L
Sbjct: 223 PHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDFKDGICTL-- 278
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
L+ D+G+Y + +++ G +S+ L
Sbjct: 279 --LITEFSKKDAGIYEVILKDDRGKDKSR-LKLVDEA 312
Score = 57.3 bits (138), Expect = 6e-10
Identities = 9/127 (7%), Positives = 34/127 (26%), Gaps = 5/127 (3%)
Query: 114 HPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLV 172
L + + + + + +A+ ++ + + +
Sbjct: 90 DEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEI 149
Query: 173 SAEIGSHRILL-PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
E +++ + + + + + + D G Y ++ S L
Sbjct: 150 F-EGPKYKMHIDRNTGIIEMFMEKLQDE-DEGTYTFQLQDGKATNHS-TVVLVGDVFKKL 206
Query: 232 ATDCSFK 238
+ F+
Sbjct: 207 QKEAEFQ 213
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 66.1 bits (161), Expect = 3e-13
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 17/95 (17%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
IT P V + E TL+C+ P +W+ +G+ S+RI
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRI--------- 52
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
DSG Y C RS L++
Sbjct: 53 ----TSASVNDSGEYRCQRGLS---GRSDPIQLEI 80
Score = 59.5 bits (144), Expect = 8e-11
Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 14/103 (13%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRIL 182
+ + +R + + + V EP L C A + +Y++G + +
Sbjct: 76 IQLEIHRGWLLLQVSSR-VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLT 134
Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ ++ + +G Y C + + S ++ V
Sbjct: 135 ILKTNI-----------SHNGTYHCSGMGKHRY-TSAGISVTV 165
Score = 52.6 bits (126), Expect = 2e-08
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 19/106 (17%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-----RIEWYKDGSLVSAEIGSHRILL 183
+ P + ++ + TL+C+ + +Y + S
Sbjct: 169 FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTS----- 222
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFA--RSKNATLDVAG 227
L+ DSG+YWC A E G RS L V G
Sbjct: 223 --SEYQILTARRE----DSGLYWCEAATEDGNVLKRSPELELQVLG 262
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 63.4 bits (154), Expect = 3e-13
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA--------EIGSHRILL 183
P + V H + DG P P + W +GS+++ + +
Sbjct: 4 PASVQ--LHTAVEMHH-WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
G L H ++G Y +A N G A S +
Sbjct: 61 RHGCLRLNQPTH----VNNGNYTLLAANPFGQA-SASIMAAFMDN 100
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 65.0 bits (158), Expect = 5e-13
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 1/97 (1%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
V P L C+A+GYP+ + W V + + LF +
Sbjct: 117 YNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNV 176
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ T + +++C R + A L +
Sbjct: 177 TSTLRINTTTNEIFYCTFRRLDP-EENHTAELVIPEL 212
Score = 34.6 bits (79), Expect = 0.016
Identities = 21/104 (20%), Positives = 29/104 (27%), Gaps = 22/104 (21%)
Query: 142 VVPRHEPTTLNCKADGYP-----EPRIEWYKDGSLVSAEIGSHRILLPAG-------SLF 189
VV T+ CK + W + + + L L
Sbjct: 12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71
Query: 190 FLSLVHGK--------KDTDSGVYWCVARNELGFARSKNATLDV 225
L G K D+GVY C+ G A K T+ V
Sbjct: 72 KDQLSLGNAALQITDVKLQDAGVYRCMISY--GGADYKRITVKV 113
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 66.6 bits (162), Expect = 5e-13
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 15/93 (16%)
Query: 122 PGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI 181
P V P I + +V + L C G+ ++W + + E +
Sbjct: 27 PSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNENKQNEW 82
Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214
+ T++G Y C ++ L
Sbjct: 83 ITEKAEA-----------TNTGKYTCTNKHGLS 104
Score = 66.6 bits (162), Expect = 6e-13
Identities = 25/106 (23%), Positives = 32/106 (30%), Gaps = 16/106 (15%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRIL--------- 182
P I R L C A G+PEP I+WY S +
Sbjct: 413 PEILT------YDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466
Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
P G L S + +G C A N++G S G
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKT-SAYFNFAFKGN 511
Score = 66.6 bits (162), Expect = 6e-13
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRIL 182
V VP ++ AS ++ E T+ C W ++ S + +
Sbjct: 204 VRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWH 263
Query: 183 LPAGSLFFLSL--VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ + + + DSGV+ C A N G A + TL+V K
Sbjct: 264 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA-NVTTTLEVVDK 310
Score = 66.6 bits (162), Expect = 6e-13
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 13/109 (11%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGSLVSAE------I 176
V G+ + + V E L + + +P+P +W + +
Sbjct: 307 VVDKGF-INIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKS 365
Query: 177 GSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + L L K T+ G Y + N A + + V
Sbjct: 366 ENESNIRYVSELHLTRL----KGTEGGTYTFLVSNSDVNA-AIAFNVYV 409
Score = 57.4 bits (138), Expect = 8e-10
Identities = 15/101 (14%), Positives = 22/101 (21%), Gaps = 4/101 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
++ S T + C PE K I P +
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIK 173
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTA 232
S+ K+ C E S+ L V
Sbjct: 174 SV---KRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 63.7 bits (155), Expect = 7e-13
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 17/95 (17%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+ P V + + TL C+ PE I+W+ +G+L+
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYR--------- 55
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ DSG Y C + S L V
Sbjct: 56 ----FKANNNDSGEYTCQTGQT---SLSDPVHLTV 83
Score = 62.1 bits (151), Expect = 3e-12
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 13/98 (13%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
+ + P E L C + P ++ ++++G +P +
Sbjct: 84 LFEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQAN 142
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ SG Y C SK T+ V
Sbjct: 143 H-----------SHSGDYHCTGNIGYTLFSSKPVTITV 169
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 62.4 bits (152), Expect = 7e-13
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 14/103 (13%)
Query: 132 PRIT---EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL---PA 185
P+I + + E L G P P++ W K G+ + + R+ +
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGA----PLDTSRVHVRTSDF 77
Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
++FF+ +DSG Y + E + + V K
Sbjct: 78 DTVFFVRQA---ARSDSGEYELSVQIENMKD-TATIRIRVVEK 116
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 63.8 bits (155), Expect = 7e-13
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 17/95 (17%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P+++ +P + + E TL C + + E +W+ +GSL S I
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNI--------- 55
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
K DSG Y C + S+ L+V
Sbjct: 56 ----VNAKFEDSGEYKCQHQQV---NESEPVYLEV 83
Score = 62.6 bits (152), Expect = 2e-12
Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRIL 182
V+ + + + + A V+ +P L C + ++ +YKDG + +H I
Sbjct: 79 VYLEVFSDWLLLQASAEVVME-GQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNIS 137
Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ ++ DSG Y+C + S+ + V
Sbjct: 138 ITNATV-----------EDSGTYYCTGKVWQLDYESEPLNITV 169
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 66.3 bits (162), Expect = 8e-13
Identities = 31/96 (32%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKD-GSLVSAEIGSHRILLPAGSLF 189
RI + A V V C+ADG P P I W LVSA+ + P G+L
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLE 444
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ D+G Y C+A N G S A L V
Sbjct: 445 VRYA----QVQDNGTYLCIAANAGGND-SMPAHLHV 475
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 65.1 bits (158), Expect = 1e-12
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 3/104 (2%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
V+ ++ + VV + E TL C G EW + L
Sbjct: 174 VYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFL 233
Query: 184 PAGSLFFLS--LVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
S + + DSG Y C + + +++
Sbjct: 234 LDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD-EKAINI 276
Score = 55.9 bits (134), Expect = 2e-09
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 8/92 (8%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL 193
+T V+ L C + W + E+ + + L +L
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNL 58
Query: 194 VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
D+G Y+C + G + L +
Sbjct: 59 TG----LDTGEYFCTHNDSRGLETDERKRLYI 86
Score = 45.8 bits (108), Expect = 3e-06
Identities = 10/104 (9%), Positives = 24/104 (23%), Gaps = 15/104 (14%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHE--PTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI 181
+ V + + E T+ C+ P+ + ++ V+ +
Sbjct: 86 IFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDH- 143
Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
F + + Y C S +
Sbjct: 144 -----QRGFSGI------FEDRSYICKTTIGDREVDSDAYYVYR 176
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 62.0 bits (151), Expect = 1e-12
Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
R I E V T C+ + W+ D + + A + I G
Sbjct: 12 RRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN-ELNEIDAQPGGYH 70
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L+L DSG + A G R+ A L V
Sbjct: 71 VLTLRQLALK-DSGTIYFEA----GDQRAS-AALRV 100
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 62.2 bits (151), Expect = 1e-12
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSH----RILLPAG 186
P I+ + E + C P P RI W +++ + I G
Sbjct: 15 PIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73
Query: 187 SLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
+ L++ + + +Y C A N G ++ L G
Sbjct: 74 VISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQG 113
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 63.8 bits (155), Expect = 3e-12
Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 3/103 (2%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
V P +T PA V R E + C A + + + I
Sbjct: 179 VQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNT-KLAIPQQSDFH 237
Query: 184 PAGSLFFLSL-VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L+L + +G Y CVA N G S + V
Sbjct: 238 NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKH-STSMFFRV 279
Score = 60.7 bits (147), Expect = 3e-11
Identities = 21/94 (22%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I VV TL C +G +EW H L GS L
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGP-------PSPHWTLYSDGSSSIL 53
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
S + ++G Y C + + L V
Sbjct: 54 STNNATFQ-NTGTYRCTEPGDPLGGSA-AIHLYV 85
Score = 53.4 bits (128), Expect = 1e-08
Identities = 17/98 (17%), Positives = 24/98 (24%), Gaps = 6/98 (6%)
Query: 134 ITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
VV + L C D E + + ++ P
Sbjct: 92 WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRG-RPLMRHTNYSFSPWHGF---- 146
Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
+H K S Y C A S + L V I
Sbjct: 147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP 184
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 64.0 bits (155), Expect = 3e-12
Identities = 16/98 (16%), Positives = 24/98 (24%), Gaps = 11/98 (11%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGS 187
Y + TL C A PEP W + +
Sbjct: 215 YPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP-----FAVAQGAQ 269
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L + + C N LG ++ T+ V
Sbjct: 270 LLIRPV----DKPINTTLICNVTNALGARQA-ELTVQV 302
Score = 59.0 bits (142), Expect = 2e-10
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 6/98 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P+ T + C + G P +I W+ D + S +G++
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT--SQVPGFLSGTVTV 175
Query: 191 LSL--VHGKKDTDSGVYWCVARNELGFA-RSKNATLDV 225
SL + D C +E + L V
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV 213
Score = 52.4 bits (125), Expect = 3e-08
Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 20/112 (17%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEP-----RIEWYKDGSLVSAEI---GSHRILLPA 185
+ + P + TL C ++ W + G S + +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 186 GSLFFLSLVHGKKD------------TDSGVYWCVARNELGFARSKNATLDV 225
L F++ G + D G Y C+ +RS + L V
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 64.4 bits (157), Expect = 3e-12
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK-DGSLVSAEIGSHRI-LLPAGSLF 189
P I E PA V L C+A + W +G++++ RI +L G+L
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
F ++ D+G+Y C+ N +G + +ATL+V G
Sbjct: 401 FTNV----TVQDTGMYTCMVSNSVGNT-TASATLNVTG 433
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 64.4 bits (157), Expect = 3e-12
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKD-GSLVSAEIGSHRI-LLPAGSLF 189
P I + P + L C+ P ++W G+++S RI +L G+L
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
F + +D+GVY C+ N G + + +A L+V
Sbjct: 411 FSHV----LLSDTGVYTCMVTNVAGNS-NASAYLNV 441
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 62.4 bits (151), Expect = 5e-12
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
V + + V + TL C ++ I+W + + + L S+
Sbjct: 108 QPVTQPFLQVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQ--LTERMTLSQNNSI 164
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + K D+G Y C N + RS + LD+
Sbjct: 165 LRIDPI---KREDAGEYQCEISNPVSVRRSNSIKLDI 198
Score = 49.7 bits (118), Expect = 1e-07
Identities = 18/114 (15%), Positives = 26/114 (22%), Gaps = 21/114 (18%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGS-LVSAEIGSHRI----------- 181
+T V L WYK + + EI
Sbjct: 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61
Query: 182 -----LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
+ GSL F + D GVY +E V ++
Sbjct: 62 SGREIIYSNGSLLFQMI----TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVT 111
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 63.6 bits (154), Expect = 5e-12
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 132 PRIT-EHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLF 189
P +T E + L CKAD P W + + +LF
Sbjct: 232 PEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPK-----GVEAQNRTLF 286
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
F + + +G Y C A N +G RS +++
Sbjct: 287 FKGPI---NYSLAGTYICEATNPIG-TRSGQVEVNI 318
Score = 52.1 bits (124), Expect = 4e-08
Identities = 17/134 (12%), Positives = 35/134 (26%), Gaps = 18/134 (13%)
Query: 95 RFSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCK 154
F+ + L L P+ + + + C
Sbjct: 110 EFATFPTGNRESQLNLTVMAKPTNWIEG-----------TQAVLRAKKGQDDKVLVATCT 158
Query: 155 -ADGYPEPRIEWYKDGS--LVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
A+G P + W EI + + S + L ++ C+
Sbjct: 159 SANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPS---REAHQQSLACIVNY 215
Query: 212 ELGFARSKNATLDV 225
+ ++ TL+V
Sbjct: 216 HMD-RFKESLTLNV 228
Score = 47.4 bits (112), Expect = 1e-06
Identities = 16/117 (13%), Positives = 29/117 (24%), Gaps = 19/117 (16%)
Query: 128 GYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP----RIEWYKDGSLVSAEI------- 176
G ++ + S L+C ++ W K + +
Sbjct: 11 GRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSM 70
Query: 177 -------GSHRILLPAGSLFFLSL-VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
R+ S ++ + + D GVY C R L V
Sbjct: 71 GVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV 127
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 59.6 bits (145), Expect = 5e-12
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
I + V E L C+ P + W KD + ++ G++ L
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRK--SQKYDVVCEGTMAML 65
Query: 192 SLVHGKKDTDSGVYWCVARNELGFAR 217
++ G D+G Y C A
Sbjct: 66 -VIRGASLKDAGEYTCEVEASKSTAS 90
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 60.0 bits (145), Expect = 6e-12
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 10/110 (9%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDGSLVSAEIGSHRILL----- 183
E P V E T K +P I+W+K + A + L
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67
Query: 184 PAGSLFFLSLVHGK-KDTDSGVYWCVARNELGFARSKNATLDVAGKISTA 232
++ + K KD +G Y C + F S + L+V T
Sbjct: 68 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD-SCSFDLEVHESTGTT 116
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 59.0 bits (143), Expect = 8e-12
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSL 188
+ TL+C+ + + WYKDG +S+ S ++ + G
Sbjct: 10 VFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSS---SSKVRVEAVGCT 65
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L + + ++G Y C A + + L VAG+
Sbjct: 66 RRLVVQQAGQA-EAGEYSCEAGGQ-----QLSFRLQVAGQ 99
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 61.5 bits (149), Expect = 9e-12
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P E S V L CK E I WYKD +S + H +L
Sbjct: 118 PHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-EKHDFKDGICTLLI 175
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
D+G+Y + +++ G +S+ L
Sbjct: 176 TEFSK----KDAGIYEVILKDDRGKDKSR-LKLVDEA 207
Score = 57.6 bits (139), Expect = 2e-10
Identities = 8/89 (8%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
+ T+ + + +A ++ + + + E +++ + +
Sbjct: 2 IDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF-EGPKYKMHIDRNTGI 60
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARS 218
+ +D D G Y ++ S
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHS 89
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 62.6 bits (151), Expect = 9e-12
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 22/112 (19%)
Query: 136 EHPASAVVPRHEPTTLNCKAD-----------GYPEPRIEWYKDGS------LVSAEIGS 178
+ V EP + C + WY ++ +
Sbjct: 12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71
Query: 179 HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
+RI L+F D+G Y C+ RN ++ L+V K S
Sbjct: 72 NRISKEKDVLWFRPT----LLNDTGNYTCMLRNTTYCSKV-AFPLEVVQKDS 118
Score = 52.2 bits (124), Expect = 3e-08
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
++ +P I WY + + ++ +L FL +++G Y CV
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQ---NFNNVIPEGMNLSFLIA----LISNNGNYTCVV 196
Query: 210 RNEL---GFARSKNATLDVAGK 228
F ++ T+ V G
Sbjct: 197 TYPENGRTFHLTRTLTVKVVGS 218
Score = 48.7 bits (115), Expect = 4e-07
Identities = 21/114 (18%), Positives = 29/114 (25%), Gaps = 16/114 (14%)
Query: 127 DGYRVPRITEHPASAV---VPRHEPTTLNCKA----DGYPEPRIEWYKDGSLVS------ 173
VP + P V E + C + W DG
Sbjct: 219 PKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDV 278
Query: 174 --AEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
E SH LS+ + Y C AR+ G +K A +
Sbjct: 279 TINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV-AKAAKVKQ 331
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 61.9 bits (149), Expect = 1e-11
Identities = 16/120 (13%), Positives = 27/120 (22%), Gaps = 19/120 (15%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
V G V T+ C + WY + L
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188
Query: 184 PAGSLFFLSLVHGK------------------KDTDSGVYWCVARNELGFARSKNATLDV 225
+ F ++ + K TD+G WC G + + +
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL-DADRSSTI 247
Score = 43.7 bits (102), Expect = 2e-05
Identities = 16/113 (14%), Positives = 21/113 (18%), Gaps = 29/113 (25%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCK---ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
+ + V L C A+ P I W K S + G
Sbjct: 2 IMTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGE 61
Query: 188 LFFLSLVHGKKD--------------------------TDSGVYWCVARNELG 214
K+ D G YWC
Sbjct: 62 GLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 58.9 bits (142), Expect = 1e-11
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 10/103 (9%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDGSLVSAEIGSHRILL----- 183
P V T + + G P ++W+K + + + L
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64
Query: 184 PAGSLFFLSLVHGK-KDTDSGVYWCVARNELGFARSKNATLDV 225
A ++ L + +G Y C + F N L V
Sbjct: 65 RASKVYLFELHITDAQPAFTGSYRCEVSTKDKFD-CSNFNLTV 106
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 59.9 bits (145), Expect = 2e-11
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 17/95 (17%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+ P V + TL C+ PE +W+ + SL+S++ S+ I
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFI--------- 58
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
DSG Y C S L+V
Sbjct: 59 ----DAATVNDSGEYRCQTNLST---LSDPVQLEV 86
Score = 56.8 bits (137), Expect = 3e-10
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 13/95 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+ + P V +P L C + ++ + ++G S F
Sbjct: 90 WLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK--------YFHHNSDFH 140
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ K DSG Y+C S+ + +
Sbjct: 141 IPKATLK---DSGSYFCRGLVGSKNVSSETVNITI 172
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 61.0 bits (148), Expect = 4e-11
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK 197
++ + T+ C ++ V ++ + + + G LFF +
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV---- 308
Query: 198 KDTDSGVYWCVARNELGFARSKNATLDVAG 227
+ D GVY C A E + + L V
Sbjct: 309 QVEDGGVYTCYAMGETFNE-TLSVELKVYN 337
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 60.5 bits (146), Expect = 4e-11
Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 4/99 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
++ + C + + + AG +
Sbjct: 92 AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAG----I 147
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIS 230
++ + K+ C A+ + + S TL V I
Sbjct: 148 TIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIK 186
Score = 58.2 bits (140), Expect = 3e-10
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRIL 182
V +P ++ S ++ + + T+ C W K
Sbjct: 181 VREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNS 240
Query: 183 LPAGSLFFLSL----VHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
G + + + DSGV+ C A N G A + TL V
Sbjct: 241 WHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA-NVTTTLKV 286
Score = 51.3 bits (122), Expect = 5e-08
Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 14/83 (16%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I + +V + +L C + W
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEW--------- 59
Query: 192 SLVHGKKDTDSGVYWCVARNELG 214
+ + T +G Y C N L
Sbjct: 60 -IQEKAEATRTGTYTCSNSNGLT 81
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 60.6 bits (146), Expect = 5e-11
Identities = 10/98 (10%), Positives = 22/98 (22%), Gaps = 17/98 (17%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADG-YPEPR---IEWYKDGSLVSAEIGSHRILLPAGS 187
++ + TL G P P W KD + +
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADAT-- 60
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++G Y ++ ++ +
Sbjct: 61 -----------SENAGSYKVTVQDTDTMTSVESEVFLM 87
Score = 46.4 bits (109), Expect = 3e-06
Identities = 12/112 (10%), Positives = 25/112 (22%), Gaps = 22/112 (19%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCK---ADGYPEP-----RIEWYKDGSLVSAEIGSHRIL 182
+ P V L+ + G W K ++
Sbjct: 92 LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-------- 143
Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATD 234
+ +GVY E + + +T + ++ D
Sbjct: 144 --TQDITIQEF----TADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQD 189
Score = 43.7 bits (102), Expect = 2e-05
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 26/113 (23%)
Query: 138 PASAVVPRHEPTTLNCK--------ADGYPEPRI--EWY--KDGSLVSAEIGSH------ 179
S V +LN + G P I WY ++G L IGS
Sbjct: 191 VESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALE 250
Query: 180 -RILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
+ P G LF S + D+ +WCVA+ ++ T++VA S
Sbjct: 251 GFSITPDGHLFKESATY----DDTAKFWCVAKLYQQ---IEDETVEVAASTSR 296
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 56.6 bits (137), Expect = 6e-11
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
+ + A V E C+ + +WYK+G V + G L
Sbjct: 9 LEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRP--SKRITISHVGRFHKL 65
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++ + D G Y V S +A L+
Sbjct: 66 -VIDDVRPEDEGDYTFVPDGYAL---SLSAKLNF 95
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 56.2 bits (136), Expect = 7e-11
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
+ + + V E + P+ +W G ++A ++ G
Sbjct: 4 ALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAA--SPDCEIIEDGKKH 60
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L ++H + +G A N +S A L V
Sbjct: 61 IL-ILHNCQLGMTGEVSFQAAN----TKSA-ANLKV 90
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 56.2 bits (136), Expect = 9e-11
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 4/89 (4%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
IT+ + V E + C + W G V + S G
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGS--SSRFQATRQGRK 64
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFAR 217
+ L + D+G R A
Sbjct: 65 YILVVREAAPS-DAGEVVFSVRGLTSKAS 92
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 56.7 bits (136), Expect = 1e-10
Identities = 22/122 (18%), Positives = 32/122 (26%), Gaps = 27/122 (22%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
+ P + VV L+ G P P + W K + + P +
Sbjct: 17 HLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGD 76
Query: 190 FLSLVHGKKDT--------------------------DSGVYWCVARNELGFARSKNATL 223
V KK D GVY +N +G N T+
Sbjct: 77 SDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTV 135
Query: 224 DV 225
V
Sbjct: 136 KV 137
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 57.3 bits (138), Expect = 2e-10
Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 15/98 (15%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
V +T + + ++ + TL ++ P ++ + + +L
Sbjct: 97 LVFGLTANSDTHLLQ-GQSLTLTLESPPGSSPSVQCRSPR---------GKNIQGGKTLS 146
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
L + DSG + C + V
Sbjct: 147 VSQL----ELQDSGTWTCTVLQNQKKV-EFKIDIVVLA 179
Score = 42.7 bits (100), Expect = 2e-05
Identities = 10/82 (12%), Positives = 17/82 (20%), Gaps = 14/82 (17%)
Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK--------- 197
+ L C A + W + + L +
Sbjct: 11 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 198 -----KDTDSGVYWCVARNELG 214
K DS Y C ++
Sbjct: 71 IIKNLKIEDSDTYICEVEDQKE 92
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 58.7 bits (141), Expect = 2e-10
Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 7/89 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P L C I WYK+ + I + +L
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELI--IDGTKYSQSGQNLII 186
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSK 219
+ + DSG Y C + ++
Sbjct: 187 HNP----ELEDSGRYDCYVHYDDVRIKND 211
Score = 53.3 bits (127), Expect = 1e-08
Identities = 13/101 (12%), Positives = 24/101 (23%), Gaps = 8/101 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP----RIEWYKDGSLVSAEIGSHRILLPAGS 187
V EP + C A I+W + +L +
Sbjct: 229 RFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSG 288
Query: 188 LFF---LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L + ++ Y C N + T+ +
Sbjct: 289 GITEATLYFENVTEEYIGNTYTCRGHNYYFDK-TLTTTVVL 328
Score = 51.8 bits (123), Expect = 4e-08
Identities = 11/93 (11%), Positives = 21/93 (22%), Gaps = 16/93 (17%)
Query: 142 VVPRHEPTTLNCKADGY---------PEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLS 192
+ EP + C + + W K G + G L+ +
Sbjct: 40 MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR----PLNRRVKNGDLWIAN 95
Query: 193 LVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ Y C + G +
Sbjct: 96 YT---SNDSHRRYLCTVTTKNGDCVQGIVRSHI 125
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 55.5 bits (133), Expect = 3e-10
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 128 GYRVPRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEW---YKDGSLVSAEIGSHRILL 183
GYR+ + P+ + + E LNC A I++ Y ++ + +
Sbjct: 4 GYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 63
Query: 184 PAGSLFFLSL----VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+GS L + G +D G+Y C A + L + + + V K
Sbjct: 64 QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEK 111
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 53.9 bits (130), Expect = 5e-10
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
V ++ P S V P + + ++ W + GS +SA + L G+
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISA--SNKYGLATEGTRHT 64
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L V D G Y +A + L V
Sbjct: 65 L-TVREVGPADQGSYAVIAGSS-----KVKFDLKV 93
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 54.3 bits (131), Expect = 5e-10
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 3/84 (3%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSL 193
+ + V + L + + ++W K+G + GS I G+ L
Sbjct: 19 QKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMS-GSKYIFESIGAKRTL-T 75
Query: 194 VHGKKDTDSGVYWCVARNELGFAR 217
+ D Y CV E
Sbjct: 76 ISQCSLADDAAYQCVVGGEKCSTE 99
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 56.2 bits (135), Expect = 6e-10
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 6/95 (6%)
Query: 137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
VP L C+A GYP + W + I P G S++
Sbjct: 109 DTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSV----PANTSHIRTPEGLYQVTSVLR- 163
Query: 197 KKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
K S + C+ N +A +D ++
Sbjct: 164 LKPQPSRNFSCMFWNAHM-KELTSAIIDPLSRMEP 197
Score = 40.4 bits (94), Expect = 2e-04
Identities = 18/105 (17%), Positives = 28/105 (26%), Gaps = 7/105 (6%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE---IGSHRILLPAGSLF 189
+T V +L C D +E + + S R L L
Sbjct: 4 TVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLP 63
Query: 190 F--LSL-VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
+ + DSG Y C+ + K T+ V
Sbjct: 64 LGKALFHIPSVQVRDSGQYRCLVICGAAWD-YKYLTVKVKASYMR 107
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 53.9 bits (130), Expect = 7e-10
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
TE + V CK +P + W K + A G L
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRA--SGKHQPSQEGLTLRL 65
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ + DS Y C G A+S+ A L V G+
Sbjct: 66 -TISALEKADSDTYTCDI----GQAQSR-AQLLVQGR 96
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 53.9 bits (130), Expect = 7e-10
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
+ TE + L C+ +EW+K + R L G+
Sbjct: 20 IKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRD---GDRHSLRQDGARCE 74
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
L + + D+G Y C+ E +A L V
Sbjct: 75 LQIRGLVAE-DAGEYLCMCGKE-----RTSAMLTVRAM 106
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 57.2 bits (138), Expect = 9e-10
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 4/117 (3%)
Query: 110 LKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG 169
L+K+ P + PR P V + C+ P + W+KD
Sbjct: 461 LRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDD 520
Query: 170 SLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
+ + + G+ + L++ K D D G Y A+N G L+V
Sbjct: 521 REL--KQSVKYMKRYNGNDYGLTINRVKGD-DKGEYTVRAKNSYGTKEEI-VFLNVT 573
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 55.3 bits (133), Expect = 1e-09
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV 208
TTL C+ +P + Y+DG + S R++ + + S + C
Sbjct: 118 TTLTCEVMNGTDPELNLYQDGKHLK---LSQRVITHKWTT-----------SLSAKFKCT 163
Query: 209 ARNELGFARSKNATLDVAGK 228
A N++ S + K
Sbjct: 164 AGNKVS-KESSVEPVSCPEK 182
Score = 39.9 bits (93), Expect = 2e-04
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 17/98 (17%)
Query: 147 EPTTLNCK--ADGYPEPRIEWYKDGSLV----------SAEIGSHRILLPAGSLFFLSLV 194
+ L+ I+W K + + L G+L L
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL- 73
Query: 195 HGKKDTDSGVYWCVARNELGFAR-SKNATLDVAGKIST 231
K D +Y + G K L + ++S
Sbjct: 74 ---KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSK 108
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 53.1 bits (128), Expect = 1e-09
Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 4/88 (4%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLV--SAEIGSHRILLPAGSLF 189
I V + + + ++ W K+G + + G
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFAR 217
L + D G Y + A
Sbjct: 68 IL-IFSDVVQEDRGRYQVITNGGQCEAE 94
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 53.1 bits (128), Expect = 2e-09
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
R T+ + TL C+ +EW K + G L G+ L
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRD--GGRYSLKQDGTRCEL 64
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+H D+G Y C+ E +ATL V
Sbjct: 65 -QIHDLSVADAGEYSCMCGQE-----RTSATLTV 92
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 52.7 bits (127), Expect = 2e-09
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
+T+ E L C+ + ++W+K+G + S + G L
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 192 SLVHGKKDTDSGVYWCVARNELGFAR 217
++ G D+ Y + A+
Sbjct: 67 -IIEGATKADAAEYSVMTTGGQSSAK 91
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 56.0 bits (134), Expect = 2e-09
Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 15/97 (15%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
V +T + + ++ + TL ++ P ++ + + +L
Sbjct: 97 VFGLTANSDTHLLQ-GQSLTLTLESPPGSSPSVQCRSPR---------GKNIQGGKTLSV 146
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAG 227
L + DSG + C + V
Sbjct: 147 SQL----ELQDSGTWTCTVLQNQKKV-EFKIDIVVLA 178
Score = 39.8 bits (92), Expect = 5e-04
Identities = 12/81 (14%), Positives = 19/81 (23%), Gaps = 18/81 (22%)
Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK--------- 197
+ L C A + W + +G+ L G +
Sbjct: 10 DTVELTCTASQKKSIQFHWKNSNQIKI--LGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 67
Query: 198 -------KDTDSGVYWCVARN 211
K DS Y C +
Sbjct: 68 PLIIKNLKIEDSDTYICEVED 88
Score = 38.2 bits (88), Expect = 0.002
Identities = 23/189 (12%), Positives = 47/189 (24%), Gaps = 31/189 (16%)
Query: 42 YLRVSGFADLTQP--PARGGFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLC 99
+ V F + G L F L + +S F L
Sbjct: 173 DIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLK 232
Query: 100 NNK-TWQKGLPLKKYHPP-------SLPLFPGVHGDGYR-------VPRITEHPASAVVP 144
N + + ++ K +LP + + VV
Sbjct: 233 NKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM 292
Query: 145 R--HEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDS 202
R L C+ G P++ A++ + + ++
Sbjct: 293 RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWV------------LNPEA 340
Query: 203 GVYWCVARN 211
G++ C+ +
Sbjct: 341 GMWQCLLSD 349
Score = 36.7 bits (84), Expect = 0.005
Identities = 10/85 (11%), Positives = 21/85 (24%), Gaps = 6/85 (7%)
Query: 146 HEPTTLNCKADGYPEPR----IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGK-KDT 200
L +A+ + + V ++ + L+L +
Sbjct: 208 TGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYA 267
Query: 201 DSGVYWCVARNELGFARSKNATLDV 225
SG + G + L V
Sbjct: 268 GSGNLTLALEAKTGKLHQE-VNLVV 291
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 54.9 bits (132), Expect = 2e-09
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 17/95 (17%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+ P V + TL C+ PE +W+ + SL+S++ S+ I
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFI--------- 58
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
DSG Y C + S L+V
Sbjct: 59 ----DAATVDDSGEYRCQTQLS---TLSDPVQLEV 86
Score = 53.0 bits (127), Expect = 9e-09
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 13/95 (13%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+ + P V +P L C + ++ + ++G + +P +L
Sbjct: 90 WLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATL-- 146
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
DSG Y+C S+ + +
Sbjct: 147 ---------KDSGSYFCRGLVGSKNVSSETVQITI 172
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 54.9 bits (131), Expect = 2e-09
Identities = 16/77 (20%), Positives = 20/77 (25%), Gaps = 5/77 (6%)
Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
L C YP I W + + G LSL + SG Y
Sbjct: 129 TTVILTCPQ--YPGSEILWQHNDKNIG---GDEDDKNIGSDEDHLSLKEFSELEQSGYYV 183
Query: 207 CVARNELGFARSKNATL 223
C R + L
Sbjct: 184 CYPRGSKPEDANFYLYL 200
Score = 51.0 bits (121), Expect = 4e-08
Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 14/99 (14%)
Query: 136 EHPASAVVPRHEPT-TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLV 194
H + + + L C I W+KDG ++ + + GS
Sbjct: 7 NHLVKVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIG-FLTEDKKKWNLGSN------ 56
Query: 195 HGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTAT 233
G+Y C + A
Sbjct: 57 ---AKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDA 92
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 51.9 bits (125), Expect = 3e-09
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
+I V + L C+ + W K+G V S R+ ++ G +
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQE---SDRLKVVQKGRIHK 62
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L ++ D G Y A + V
Sbjct: 63 L-VIANALTEDEGDYVFAPDAYNVTLP---AKVHV 93
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 53.6 bits (128), Expect = 5e-09
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 124 VHGDGYRVPRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEW---YKDGSLVSAEIGSH 179
V GYR+ + P+ + + E LNC A I++ Y ++ +
Sbjct: 97 VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 156
Query: 180 RILLPAGSLFFLSL----VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ +GS L + G +D G+Y C A + L + + V
Sbjct: 157 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHED 208
Score = 40.2 bits (93), Expect = 2e-04
Identities = 8/95 (8%), Positives = 27/95 (28%), Gaps = 6/95 (6%)
Query: 131 VPRITEHPASA--VVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
+ +++ +++ + C + +RI +
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKG 65
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARSKNATL 223
F + + +G+ +C A+ +S +
Sbjct: 66 F---TIPSYMISYAGMVFCEAKINDESYQSIMYIV 97
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 50.0 bits (120), Expect = 2e-08
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI-LLPAGSLFF 190
R E V TL C P ++W +++ + L G++
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRP---GDKYSLRQEGAMLE 64
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFAR 217
L + + + DSG Y C ++ A
Sbjct: 65 LVVRNLRPQ-DSGRYSCSFGDQTTSAT 90
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 48.2 bits (115), Expect = 7e-08
Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 11/96 (11%)
Query: 132 PRIT--EHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLF 189
I + S E L C+ + WYKDG V ++ G
Sbjct: 9 VHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEE--SELLVVKMDGRKH 65
Query: 190 FLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L ++ K DSG + C S + V
Sbjct: 66 RL-ILPEAKVQDSGEFECRTEGV-----SAFFGVTV 95
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 50.8 bits (120), Expect = 1e-07
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 14/110 (12%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEP-RIEWYKDGSLVSAEI------ 176
V + + P + V T+NC R YK L +
Sbjct: 105 VSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGY 164
Query: 177 ------GSHRI-LLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219
G R+ + G L F +++ + +D+G Y C A ++ +
Sbjct: 165 VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKN 214
Score = 49.6 bits (117), Expect = 3e-07
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 148 PTTLNCKADGYPEPRIEWYKDG--SLVSAEIGSHR--ILLPAGSLFFLSLVHGKKDTDSG 203
P CK Y + +W G +L S + G + + S ++ D G
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG 522
Query: 204 VYWCVARNELGFARSKNATLDVAGKISTAT 233
YWC + + + + V + + +
Sbjct: 523 WYWCGVKQGHFYGETAAVYVAVEERKAAGS 552
Score = 48.1 bits (113), Expect = 1e-06
Identities = 11/68 (16%), Positives = 20/68 (29%)
Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
C+ + G A G + F ++ G + D+G Y
Sbjct: 247 NVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYL 306
Query: 207 CVARNELG 214
C A ++
Sbjct: 307 CGAHSDGQ 314
Score = 44.6 bits (104), Expect = 1e-05
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 18/94 (19%)
Query: 138 PASAVVPRHEPTTLNCKAD---GYPEPRIEWYKDGSLVS-----------AEIGSHRILL 183
P ++ C R W + G+ + + R L
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 184 ---PAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214
P F +++ +D DSG Y C
Sbjct: 67 TNFPENGTFVVNIAQLSQD-DSGRYKCGLGINSR 99
Score = 44.2 bits (103), Expect = 2e-05
Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 16/100 (16%)
Query: 135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK----------------DGSLVSAEIGS 178
P + C + I+++ +G + + G
Sbjct: 335 PRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGR 394
Query: 179 HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS 218
+L G+ F +++ D+G YWC+ + + +
Sbjct: 395 LSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTT 434
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 49.0 bits (116), Expect = 2e-07
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 8/94 (8%)
Query: 133 RITEHPASAVVPRH-EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
+I P S + + + +L C G P W + S +
Sbjct: 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS---PLNGKVTNEGTTSTLTM 58
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ V + Y C A E K +++
Sbjct: 59 NPV---SFGNEHSYLCTATCESR-KLEKGIQVEI 88
Score = 47.8 bits (113), Expect = 5e-07
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADG-YPEPR--IEWYKDGSLVSAEIGSHRILLPA 185
Y P+ E S + +P T+ C YP R I+ K L+ ++ +
Sbjct: 89 YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKS 148
Query: 186 GSLFFLSLVHGKKDTDSG-VYWCVARNELG------FARSKNATLDV 225
L + D G V C A+ + R L V
Sbjct: 149 LETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQV 195
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 49.4 bits (117), Expect = 4e-07
Identities = 21/102 (20%), Positives = 28/102 (27%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
V G + V + T C A G + G V +
Sbjct: 157 VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVT 216
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ V D+G Y C+ R E G S A L V
Sbjct: 217 SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Score = 28.2 bits (62), Expect = 2.6
Identities = 9/66 (13%), Positives = 14/66 (21%), Gaps = 2/66 (3%)
Query: 144 PRHEPTTLN--CKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD 201
P LN K + P W G + + F+ +
Sbjct: 87 SNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGH 146
Query: 202 SGVYWC 207
G
Sbjct: 147 QGYLAI 152
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 48.3 bits (114), Expect = 4e-07
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 19/113 (16%)
Query: 131 VPRITEHPASAVVPRHEPT-TLNCKA-DGYPEPRIEWYKDGSLVSAEIGSH-------RI 181
++ + + V C + +G P P+I WY++G + + + R
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177
Query: 182 LLPAGSLF----FLSLVHGKKDTDSGVYWCVARNEL-----GFARSKNATLDV 225
+ A L L L K D + C A L G S L +
Sbjct: 178 VREASGLLSLTSTLYLRLRKDD-RDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229
Score = 32.1 bits (72), Expect = 0.100
Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 18/109 (16%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEPR-IEWYKDGS-------LVSAEIGSHRILLPAGSLF 189
P V R + L+C G + +EW+ + GS + +
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 190 FLSLVHGKKD----------TDSGVYWCVARNELGFARSKNATLDVAGK 228
D Y CV R A L+V K
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK 115
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 46.3 bits (110), Expect = 5e-07
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 22/111 (19%)
Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA 174
S ++P R E L C+ P + W KDG V
Sbjct: 10 VSSWIVYP-------------SGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVE 55
Query: 175 EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+L ++ L ++ + DSG Y C +E S + T+ V
Sbjct: 56 --SPALLLQKEDTVRRL-VLPAVQLEDSGEYLCEIDDE-----SASFTVTV 98
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 45.8 bits (109), Expect = 5e-07
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 132 PRITEHPASAV-VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
+ A V + + P+ ++WYK+G + + I G
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRP--STKYIFEHKGCQRI 64
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFAR 217
L ++ + TD Y+ A +E
Sbjct: 65 L-FINNCQMTDDSEYYVTAGDEKCSTE 90
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 47.4 bits (112), Expect = 8e-07
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADG-YPEPRIEWYKD-GSLVSAEIGSHRILLPAGS 187
++ + L C++ G YP+P+I+W + G + ++
Sbjct: 117 VAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTV--EAPVVADGVG 174
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVA 226
L+ ++ + + C R+ L K A++ +A
Sbjct: 175 LYAVAASVIMRGSSGEGVSCTIRSSLL-GLEKTASISIA 212
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 46.5 bits (110), Expect = 1e-06
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 14/90 (15%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
+ + + TL C+ + ++ Y+ L +
Sbjct: 93 LDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKE-----------HLRSLRQ 141
Query: 189 FFLSLVHGKKDTDSGVYWCVARNELGFARS 218
+S + + C A N +
Sbjct: 142 KTMSY---QWTNLRAPFKCKAVNRVSQESE 168
Score = 35.7 bits (82), Expect = 0.006
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 14/78 (17%)
Query: 147 EPTTLNCKADGYPE--PRIEWYKDGSLVSA--------EIGSHRILLPAGSLFFLSLVHG 196
LN + + W + +LV+ +L G L +L
Sbjct: 12 HGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNL--- 68
Query: 197 KKDTDSGVYWCVARNELG 214
DSG Y + G
Sbjct: 69 -TRDDSGTYNVTVYSTNG 85
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 46.6 bits (110), Expect = 1e-06
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 6/98 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P+ T + C + G P +I W+ D + S +G++
Sbjct: 117 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQT--SQVPGFLSGTVTV 174
Query: 191 LSLVHGK--KDTDSGVYWCVARNE-LGFARSKNATLDV 225
SL D C +E + +L V
Sbjct: 175 TSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTV 212
Score = 34.3 bits (78), Expect = 0.024
Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 20/115 (17%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPR-----IEWYKDGS-----LVSAEIGSHRILL 183
+ + P + TL C + W + G + G
Sbjct: 2 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 61
Query: 184 PAGSLFFLSLVHGKKD----------TDSGVYWCVARNELGFARSKNATLDVAGK 228
L +D D G Y C+ +RS + L V K
Sbjct: 62 KRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAK 116
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 46.8 bits (110), Expect = 2e-06
Identities = 16/119 (13%), Positives = 29/119 (24%), Gaps = 29/119 (24%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCK---ADGYPEPRIEWYKDGSLVSAEIG---------- 177
+P +T V E + C + R++W A
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 178 -----------SHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
GSL + + D G+Y C R + +++
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDV----QKADEGIYTCEIRLKNESM-VMKKPVEL 118
Score = 42.2 bits (98), Expect = 7e-05
Identities = 23/141 (16%), Positives = 38/141 (26%), Gaps = 25/141 (17%)
Query: 117 SLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPR---IEWYKDG---- 169
L V + + E P V + T + C E R + W
Sbjct: 104 RLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHT 163
Query: 170 ---SLVSAEIGSHRILLPAGSLFF----LSLVHGKKD----------TDSGVYWCVARNE 212
+++S + + F L+ + D +D G+Y C
Sbjct: 164 EEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVG 223
Query: 213 LGFARSKNATLDVAGKISTAT 233
+R K L V T
Sbjct: 224 KLESR-KTIVLHVVQDEFQRT 243
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 45.4 bits (107), Expect = 3e-06
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
+ P I+ +P + C G +PEP + W ++G ++A + P
Sbjct: 108 FPTPSIS----DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTV-SQDPETE 162
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNEL 213
L+ +S T + + C+ +
Sbjct: 163 LYAVSSKLDFNMTTNHSFMCLIKYGH 188
Score = 30.0 bits (67), Expect = 0.44
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 16/94 (17%)
Query: 147 EPTTLNCK----ADGYPEPRIEWYKDGSLVSAEIG---------SHRILLPAGSLFFLSL 193
E TL+C + + RI W K+ +V + +R + + + +
Sbjct: 10 EVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVI 69
Query: 194 VHGKKDTDSGVYWCV--ARNELGFARSKNATLDV 225
+ +D G Y CV + F R A + +
Sbjct: 70 -LALRPSDEGTYECVVLKYEKDAFKREHLAEVTL 102
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 44.9 bits (106), Expect = 4e-06
Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 17/76 (22%)
Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
TL C+ + ++ Y+ + + + + + + C A
Sbjct: 119 TLTCEVLEGTDVELKLYQGKEHLRS--LRQKTMSY------------QWTNLRAPFKCKA 164
Query: 210 RNELGFARSKNATLDV 225
N + ++ V
Sbjct: 165 VNRVS---QESEMEVV 177
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 43.2 bits (101), Expect = 4e-06
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
L C P I W + + + I LSL + SG Y C
Sbjct: 25 ILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDH---LSLKEFSELEQSGYYVCYP 79
Query: 210 RNELGFARSKNATL 223
R + L
Sbjct: 80 RGSKPEDANFYLYL 93
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 43.3 bits (101), Expect = 6e-06
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 10/113 (8%)
Query: 122 PGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDGSLVSAEIGS 178
G G + P S V + + K +G +P I+W+K L
Sbjct: 3 SGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSG 62
Query: 179 HRILL-----PAGSLFFLSLVHGK-KDTDSGVYWCVARNELGFARSKNATLDV 225
R A +++ + L GK D G Y + + S +DV
Sbjct: 63 ARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCD-SCGFNIDV 114
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 43.1 bits (101), Expect = 7e-06
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 18/105 (17%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
+T H + V + TL C ++W + + +L +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIF-LNEYPVLKNSK----Y 56
Query: 192 SLVHGKKDT-----------DSGVYWCVARNELGFARSKNATLDV 225
L+H + D GVY C+ ++ +K + V
Sbjct: 57 QLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSV--STKEVKVIV 99
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 44.1 bits (104), Expect = 9e-06
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + P +V+ T+ C+ K+ S + L +
Sbjct: 6 PTLWAEP-GSVISWGNSVTIWCQGT-LEAREYRLDKEESPAPW---DRQNPLEPKNKARF 60
Query: 192 SLVHGKKDTDSGVYWCVARNELGF-ARSKNATLDVAG 227
S+ +D +G Y C R+ +G+ S L + G
Sbjct: 61 SIPSMTED-YAGRYRCYYRSPVGWSQPSDPLELVMTG 96
Score = 36.3 bits (84), Expect = 0.003
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 116 PSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE 175
PS PL + G Y P ++ P S +V + TL C++ K+ + +
Sbjct: 86 PSDPLELVMTGA-YSKPTLSALP-SPLVTSGKSVTLLCQSRSPM-DTFLLCKERA--AHP 140
Query: 176 IGSHRILLPAGS---LFFLSLVHGKKDTDSGVYWCVARN 211
+ R A F +S V G Y C + +
Sbjct: 141 LLCLRSEHGAQQHQAEFPMSPV---TSVHGGTYRCFSSH 176
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 43.6 bits (103), Expect = 1e-05
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I P +VP+ + T+ C+ + Y + + +GSL + + +
Sbjct: 5 PFIWAEP-HFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVD---RPKPPERINKVKF 59
Query: 192 SLVHGKKDTDSGVYWCVARNELGF-ARSKNATLDV 225
+ +G Y C+ R + S L V
Sbjct: 60 YIPDMNSR-MAGQYSCIYRVGELWSEPSNLLDLVV 93
Score = 35.6 bits (82), Expect = 0.007
Identities = 27/115 (23%), Positives = 36/115 (31%), Gaps = 12/115 (10%)
Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA 174
PS L V + Y P ++ HP V E T C+ D K+G
Sbjct: 84 EPSNLLDLVVT-EMYDTPTLSVHP-GPEVISGEKVTFYCRLDTATS-MFLLLKEGRSSHV 140
Query: 175 EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA--RNELGFARSKNATLDVAG 227
+ G + + F L V G Y C N S+ L V G
Sbjct: 141 QRGYGK----VQAEFPLGPV---TTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG 188
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 44.1 bits (103), Expect = 2e-05
Identities = 14/86 (16%), Positives = 19/86 (22%), Gaps = 7/86 (8%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
R P + TL C + + W + R
Sbjct: 4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH--PSRWAGMGRR 61
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNEL 213
L S+ DSG Y C
Sbjct: 62 LLLRSVQL----HDSGNYSCYRAGRP 83
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 43.3 bits (102), Expect = 2e-05
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRIL 182
+ +P I+ S V+P + C+A ++ K+ + R+
Sbjct: 2 AQEGDFPMPFISAKS-SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYRE---IGRRLK 57
Query: 183 LPAGSLFFLSLVHGKKDTDSGVYWCVARNELG-FARSKNATLDV 225
+ + H + +G Y C R F S L V
Sbjct: 58 FWNETDPEFVIDHMDAN-KAGRYQCQYRIGHYRFRYSDTLELVV 100
Score = 40.2 bits (94), Expect = 2e-04
Identities = 23/120 (19%), Positives = 32/120 (26%), Gaps = 13/120 (10%)
Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA 174
S L V G Y P ++ V+ E +L C + P R K+G
Sbjct: 91 RYSDTLELVVTGL-YGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEG----- 143
Query: 175 EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGF----ARSKNATLDVAGKIS 230
+G + SG+Y C S L V I
Sbjct: 144 --ELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIH 201
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 42.9 bits (100), Expect = 2e-05
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 18/102 (17%)
Query: 135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLV 194
E+ V L C D + ++W K+G LP L L
Sbjct: 3 AENIEYKVSISGTSVELTCPLD--SDENLKWEKNGQ-----------ELPQKHDKHLVLQ 49
Query: 195 HGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTATDCS 236
+ DSG Y C +KN L + ++ +A D
Sbjct: 50 DFSEVEDSGYYVCYTPAS-----NKNTYLYLKARVGSADDAK 86
Score = 35.2 bits (80), Expect = 0.009
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 13/66 (19%)
Query: 150 TLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA 209
L C I+W KDGS++S + +L + KD G Y C
Sbjct: 126 LLTCGLTD---KTIKWLKDGSIISPLNATKNTW---------NLGNNAKD-PRGTYQCQG 172
Query: 210 RNELGF 215
E
Sbjct: 173 AKETSN 178
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 42.1 bits (99), Expect = 4e-05
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + P +V+ + P TL C+ Y++ RI
Sbjct: 6 PTLWAEP-GSVITQGSPVTLRCQGG-QETQEYRLYREKKTAP---WITRIPQELVKKGQF 60
Query: 192 SLVHGKKDTDSGVYWCVARNE 212
+ + +G Y C ++
Sbjct: 61 PIPSITWE-HTGRYRCYYGSD 80
Score = 38.3 bits (89), Expect = 8e-04
Identities = 25/117 (21%), Positives = 34/117 (29%), Gaps = 8/117 (6%)
Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA 174
S PL V G Y P ++ P S VV TL C + K+G
Sbjct: 86 ESSDPLELVVTGA-YIKPTLSAQP-SPVVNSGGNVTLQCDSQVAF-DGFILCKEGEDEHP 142
Query: 175 EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE----LGFARSKNATLDVAG 227
+ + + S S+ Y C A + S L V G
Sbjct: 143 QCLNSQPHARGSSRAIFSVGPVSPS-RRWWYRCYAYDSNSPYEWSLPSDLLELLVLG 198
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 42.2 bits (99), Expect = 5e-05
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I P +VP+ + T+ C+ + Y + + +GSL + + +
Sbjct: 8 PFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVD---RPKPPERINKVKF 62
Query: 192 SLVHGKKDTDSGVYWCVARNELGF-ARSKNATLDV 225
+ +G Y C+ R + S L V
Sbjct: 63 YIPDMNSR-MAGQYSCIYRVGELWSEPSNLLDLVV 96
Score = 35.3 bits (81), Expect = 0.009
Identities = 28/118 (23%), Positives = 37/118 (31%), Gaps = 12/118 (10%)
Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSA 174
PS L V + Y P ++ HP V E T C+ D K+G
Sbjct: 87 EPSNLLDLVVT-EMYDTPTLSVHP-GPEVISGEKVTFYCRLDTAT-SMFLLLKEGRSSHV 143
Query: 175 EIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVA--RNELGFARSKNATLDVAGKIS 230
+ G + + F L V G Y C N S+ L V G I
Sbjct: 144 QRGYGK----VQAEFPLGPV---TTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIE 194
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 40.6 bits (95), Expect = 1e-04
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
+ P +V+ R T+ C+ K+GS + L +
Sbjct: 6 ATLWAEP-GSVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPW---DTQNPLEPKNKARF 60
Query: 192 SLVHGKKDTDSGVYWCVARNELGF-ARSKNATLDVAG 227
S+ + +G Y C + G+ S L V G
Sbjct: 61 SIPSMTEH-HAGRYRCYYYSPAGWSEPSDPLELVVTG 96
Score = 39.5 bits (92), Expect = 3e-04
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 4/96 (4%)
Query: 116 PSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAE 175
PS PL V G Y P ++ P S VV E TL C + R ++G +
Sbjct: 86 PSDPLELVVTGF-YNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSW 142
Query: 176 IGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
++ + + C
Sbjct: 143 TLDSQLTPSGQFQALFPVGPVTPS-HRWMLRCYGSR 177
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 40.2 bits (94), Expect = 3e-04
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
H G P ++ P SAVVPR TL C YK+ +
Sbjct: 17 SHMGGQDKPFLSAWP-SAVVPRGGHVTLRCHYRH-RFNNFMLYKEDRIHIPIFHGRIF-- 72
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARN 211
F +S V +G Y C +
Sbjct: 73 --QESFNMSPV---TTAHAGNYTCRGSH 95
Score = 39.5 bits (92), Expect = 6e-04
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 10/102 (9%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS- 187
+R P + HP +V E L C +D E +K+G +I
Sbjct: 117 HRKPSLLAHP-GPLVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKA 174
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELGF----ARSKNATLDV 225
F + + +G Y C A S + V
Sbjct: 175 NFSIGPM---MLALAGTYRCYGSVTHTPYQLSAPSDPLDIVV 213
Score = 34.5 bits (79), Expect = 0.022
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 10/103 (9%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
Y P ++ P V E TL+C + + ++G + E + +
Sbjct: 217 YEKPSLSAQP-GPKVQAGESVTLSCSSRSSYD-MYHLSREGG--AHERRLPAVRKVNRTF 272
Query: 189 FFLSLVHGKKDTDSGVYWCVARNE----LGFARSKNATLDVAG 227
+ T G Y C S + V G
Sbjct: 273 QADFPLGPA--THGGTYRCFGSFRHSPYEWSDPSDPLLVSVTG 313
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 39.5 bits (92), Expect = 3e-04
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
+H +R P + HP +V E L C +D +++G
Sbjct: 1 MHEGVHRKPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTL-RLIGEHH 57
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARN 211
S S+ +D +G Y C
Sbjct: 58 DGVSKANFSISRMTQD-LAGTYRCYGSV 84
Score = 36.0 bits (83), Expect = 0.005
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSL 188
Y P ++ P V E TL+C + + ++G + E G+
Sbjct: 106 YEKPSLSAQP-GPTVLAGENVTLSCSSRSSYD-MYHLSREGE--AHERRLPAGPKVNGTF 161
Query: 189 FFLSLVHGKKDTDSGVYWCVAR 210
+ T G Y C
Sbjct: 162 QADFPLG--PATHGGTYRCFGS 181
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 37.8 bits (88), Expect = 4e-04
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 3/83 (3%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P I+ P V+P T C+ ++ + P+ S
Sbjct: 10 PSISAEP-GTVIPLGSHVTFVCRGP-VGVQTFRLERESRSTYNDTEDVSQASPSESEARF 67
Query: 192 SLVHGKKDTDSGVYWCVARNELG 214
+ + ++G Y C+
Sbjct: 68 RIDSVSEG-NAGPYRCIYYKPPK 89
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 39.7 bits (91), Expect = 6e-04
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 125 HGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLP 184
+ L C R+ W ++ AE L+
Sbjct: 527 GDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE-SPKYGLMG 584
Query: 185 AGSLFFLSLVHGKKDTDSGVYWCVARNELGFARS 218
+L +L + DSGVY C++ E ++
Sbjct: 585 RKNLLIFNL----SEGDSGVYQCLSE-ERVKNKT 613
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 38.5 bits (90), Expect = 7e-04
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 8/74 (10%)
Query: 129 YRVPRITEHPASAVVPRH-----EPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRI 181
P P V+ EP L C D P + W ++G V+ + S +
Sbjct: 78 NYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGV-SETV 136
Query: 182 LLPAGSLFFLSLVH 195
LP F +
Sbjct: 137 FLPREDHLFRKFHY 150
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 37.9 bits (88), Expect = 0.001
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 16/95 (16%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + P S++VP +P TL C+ K S + I
Sbjct: 9 PSLQALP-SSLVPLEKPVTLRCQGP-PGVDLYRLEKLSSSRYQDQAVLFI---------- 56
Query: 192 SLVHGKKDTDSGVYWCVARNELGF-ARSKNATLDV 225
K + +G Y C +N + S L
Sbjct: 57 ---PAMKRSLAGRYRCSYQNGSLWSLPSDQLELVA 88
Score = 34.0 bits (78), Expect = 0.022
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILL 183
V + P ++ P V TL C+ + + YK+G +
Sbjct: 87 VATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGFD-QFALYKEGDPAPYKNPER---- 140
Query: 184 PAGSLFFLSLVHGKKDTDSGVYWCVARN 211
+ F + V SG Y C + +
Sbjct: 141 WYRASFPIITV---TAAHSGTYRCYSFS 165
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 37.7 bits (87), Expect = 0.001
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 18/95 (18%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
++T H L C D W G+ +S
Sbjct: 111 IQVTNHS-QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS---SQPN---------- 156
Query: 191 LSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
L++ + + Y C+A N + + + ++
Sbjct: 157 LTVSWDPRISSEQDYTCIAENAVS---NLSFSVSA 188
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 38.0 bits (88), Expect = 0.001
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P + HP +V E L C +D +++G S
Sbjct: 8 PSLLAHP-GPLVKSEETVILQCWSD-VRFQHFLLHREGKFKDTLHLIGE-HHDGVSKANF 64
Query: 192 SLVHGKKDTDSGVYWCVARN 211
S+ +D +G Y C
Sbjct: 65 SIGPMMQD-LAGTYRCYGSV 83
Score = 34.2 bits (78), Expect = 0.024
Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 13/122 (10%)
Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDG-SLVS 173
PS PL + Y P ++ P V E TL+C + + ++G +
Sbjct: 92 APSDPLDIVIT-GLYEKPSLSAQP-GPTVLAGESVTLSCSSRSSYD-MYHLSREGEAHER 148
Query: 174 AEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE----LGFARSKNATLDVAGKI 229
++ + F L T G Y C S + V G
Sbjct: 149 RFSAGPKVNGTFQADFPLGPA-----THGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNP 203
Query: 230 ST 231
S
Sbjct: 204 SN 205
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 38.1 bits (88), Expect = 0.002
Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 11/84 (13%)
Query: 138 PASAVVPRHEPTTLNC-------KADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFF 190
P S VV H T C I W + + E + I+ S
Sbjct: 10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE--QYTIINRTASS-- 65
Query: 191 LSLVHGKKDTDSGVYWCVARNELG 214
++ + +L
Sbjct: 66 VTFTDIASLNIQLTCNILTFGQLE 89
Score = 27.3 bits (60), Expect = 5.6
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 8/84 (9%)
Query: 146 HEPTTLNCK----ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD 201
+E + C+ + + E + + + P S V+
Sbjct: 114 NEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYF----V 169
Query: 202 SGVYWCVARNELGFARSKNATLDV 225
+ W A N LG S + D
Sbjct: 170 NIEVWVEAENALGKVTSDHINFDP 193
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 37.9 bits (87), Expect = 0.002
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 24/119 (20%)
Query: 99 CNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG- 157
C + L Y P P + P + TL C+ +G
Sbjct: 69 CPDGQSTAKTFLTVYWTPERVEL---------------APLPSWQPVGKNLTLRCQVEGG 113
Query: 158 YPEPR--IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214
P + + E+ + + LV +D + C +L
Sbjct: 114 APRANLTVVLLRGEK----ELKREPAVGEPAEVTTTVLVR--RDHHGANFSCRTELDLR 166
Score = 34.1 bits (77), Expect = 0.025
Identities = 10/100 (10%), Positives = 27/100 (27%), Gaps = 8/100 (8%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKADGYP---EPRIEWYKDGSLVSAEIGSHRILLPA 185
+ + V+ T+ C DG E ++ ++ + A
Sbjct: 186 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 245
Query: 186 GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ ++ +D + C + T+ +
Sbjct: 246 KASVSVT----AEDEGTQRLTCAVILGNQS-QETLQTVTI 280
Score = 31.4 bits (70), Expect = 0.24
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 10/75 (13%)
Query: 137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
P+ ++PR + C + + L E+ ++ LS V
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPKLLGI--ETPLPKKELLLPG---NNRKVYELSNV-- 57
Query: 197 KKDTDSGVYWCVARN 211
+ C +
Sbjct: 58 ---QEDSQPMCYSNC 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 43/245 (17%), Positives = 86/245 (35%), Gaps = 77/245 (31%)
Query: 4 VVQAKARLESFVENSSQRCIK-----INLPKASHSPSSRPDQNYLR---VSG-FADLTQ- 53
+ + L + ++ K +N+ + +PS+ PD++YL +S + Q
Sbjct: 188 IKFSAETLSELIR-TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 54 ----PPAR-GGFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQ--- 105
A+ GF P + + S+ + + ++ +W+
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET-------------DSWESFF 293
Query: 106 ----KGLPLKKYHPPSLPLF-PGVHG-DGYRVPRITEHPASAV---VPRHE--PTT-LNC 153
K + + LF GV + Y + P S + + +E P+ L+
Sbjct: 294 VSVRKAITV---------LFFIGVRCYEAYPNTSL---PPSILEDSLENNEGVPSPMLSI 341
Query: 154 KADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNEL 213
+ +++ V + SH LPAG +SLV+G + V V+
Sbjct: 342 S--NLTQEQVQ-----DYV-NKTNSH---LPAGKQVEISLVNGA---KNLV---VS---- 380
Query: 214 GFARS 218
G +S
Sbjct: 381 GPPQS 385
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 37.2 bits (85), Expect = 0.002
Identities = 12/94 (12%), Positives = 24/94 (25%), Gaps = 10/94 (10%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADG-YPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
++ V L C+ ++W + +G+ + L
Sbjct: 9 QVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDT----SLGAVQSDTGRSVLTVR 64
Query: 192 SLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ + +G CV G L V
Sbjct: 65 NA----SLSAAGTRVCVGSCG-GRTFQHTVQLLV 93
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 36.4 bits (84), Expect = 0.003
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 17/77 (22%)
Query: 149 TTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCV 208
TL C+ + ++ Y+ + S R + + + C
Sbjct: 108 ATLTCEVLEGTDVELKLYQGKEHLR----SLRQK----------TMSYQWTNLRAPFKCK 153
Query: 209 ARNELGFARSKNATLDV 225
A N + ++ V
Sbjct: 154 AVNRVS---QESEMEVV 167
Score = 35.7 bits (82), Expect = 0.006
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 21/97 (21%)
Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEI------------GSHRILLPAGSLFFLSLV 194
T + ++ P + W K V AE+ + +GSL +L
Sbjct: 11 GNVTFHVPSNV-PLKEVLWKKQKDKV-AELENSEFRAFSSFKNRVYLDTVSGSLTIYNL- 67
Query: 195 HGKKDTDSGVYWCVARNELGFARSKNATLDVAGKIST 231
+D Y + N + L V +S
Sbjct: 68 ---TSSDEDEYEMESPNITD---TMKFFLYVLEMVSK 98
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 35.9 bits (83), Expect = 0.003
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGS 187
+ P+I + P LNC +P I+ K+G + + +
Sbjct: 23 KTPQIQVYSRHPPENGK-PNILNCYVTQFHPPHIEIQMLKNGKKIPK--VEMSDMSFSKD 79
Query: 188 LFFLSLVH 195
F L H
Sbjct: 80 WSFYILAH 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.003
Identities = 12/110 (10%), Positives = 25/110 (22%), Gaps = 37/110 (33%)
Query: 51 LTQPPARGGFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYP----------------- 93
+ A G F LL + ++ + V +Y
Sbjct: 55 IMSKDAVSGTL-----RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 94 NRFSLCNNKTWQKGLPLKKYHPPSLPLF-----------PG----VHGDG 128
+ ++ + KY+ L + P + G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 35.2 bits (81), Expect = 0.003
Identities = 15/94 (15%), Positives = 23/94 (24%), Gaps = 18/94 (19%)
Query: 143 VPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDT-- 200
V L C+ D ++W + L + LV
Sbjct: 18 VVEGGTAILTCRVDQNDNTSLQWSNPAQQTLY-FDDKKALRDNR----IELVRASWHELS 72
Query: 201 ---------DSGVYWCVARNELGFARSKNATLDV 225
D G Y C + ++ A L V
Sbjct: 73 ISVSDVSLSDEGQYTCSL-FTMP-VKTSKAYLTV 104
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune
response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 35.4 bits (82), Expect = 0.003
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGS 187
R P+I + LNC G +P ++ K+G + E H L +
Sbjct: 23 RTPKIQVYSRHPAENGK-SNFLNCYVSGFHPSDIEVDLLKNGERI--EKVEHSDLSFSKD 79
Query: 188 LFFLSLVH 195
F L +
Sbjct: 80 WSFYLLYY 87
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 35.0 bits (81), Expect = 0.003
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 6/80 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLF 189
P+I + TL C G +P IE K+G +++ L
Sbjct: 5 PKIQVYSHYPGEYGK-ENTLICYVSGFHPPDISIELLKNGEVIAD--AQQTDLAFEKGWQ 61
Query: 190 FLSLVHGKKDTDSG-VYWCV 208
F + Y C
Sbjct: 62 FHLTKSVSFKPEKSDEYSCS 81
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 36.2 bits (83), Expect = 0.004
Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 24/122 (19%)
Query: 96 FSLCNNKTWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKA 155
+S C + L Y P P + P + TL C+
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPERVEL---------------APLPSWQPVGKQLTLRCQV 110
Query: 156 DG-YPEPR--IEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNE 212
+G P + + + + E PA V ++D + C +
Sbjct: 111 EGGAPRAQLTVVLLRGEKELKREPAVGE---PAEVTT---TVLVRRDHHGAQFSCRTELD 164
Query: 213 LG 214
L
Sbjct: 165 LR 166
Score = 27.0 bits (59), Expect = 4.2
Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 11/89 (12%)
Query: 137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
P+ ++PR + C + + L E+ ++ LS V
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPKLLGI--ETPLPKKELLLPG---NNRKVYELSNV-- 57
Query: 197 KKDTDSGVYWCVARNELGFARSKNATLDV 225
+ C + + L V
Sbjct: 58 ---QEDSQPMCYSNCP-DGQSTAKTFLTV 82
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 34.7 bits (80), Expect = 0.004
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
P ++ HP S V + TL C ++ + +G+L + + F
Sbjct: 6 PSLSLHP-SQGVSLGDTVTLRCHLP-RMAAWVQLWLNGTLRFDKEKDKE---QDAAEFSF 60
Query: 192 SLVHGKKDTDSGVYWCVAR 210
++ D+G Y C +
Sbjct: 61 AVT---NLEDAGTYQCRYQ 76
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 35.9 bits (83), Expect = 0.005
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLF 189
P +T P V P TL C D +P + W +G LV+ + + + LP
Sbjct: 87 PEVTVFPKEPVELGQ-PNTLICHIDKFFPPVLNVTWLCNGELVTEGV-AESLFLPRTDYS 144
Query: 190 FLSLVH 195
F +
Sbjct: 145 FHKFHY 150
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B*
1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B
1duz_B* ...
Length = 100
Score = 34.6 bits (80), Expect = 0.005
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGS 187
R P+I + LNC G +P ++ K+G + E H L +
Sbjct: 4 RTPKIQVYSRHPAENGK-SNFLNCYVSGFHPSDIEVDLLKNGERI--EKVEHSDLSFSKD 60
Query: 188 LFFLSLVH 195
F L +
Sbjct: 61 WSFYLLYY 68
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 34.6 bits (80), Expect = 0.005
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGS 187
+ P+I + P LNC +P I+ K+G + + +
Sbjct: 3 KTPQIQVYSRHPPENGK-PNILNCYVTQFHPPHIEIQMLKNGKKIPK--VEMSDMSFSKD 59
Query: 188 LFFLSLVH 195
F L H
Sbjct: 60 WSFYILAH 67
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 35.2 bits (80), Expect = 0.011
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 14/86 (16%)
Query: 146 HEPTTLNC----KADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTD 201
PT L+C + P W + + L+L +D
Sbjct: 138 GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSE--------LTLTPRPED-H 188
Query: 202 SGVYWCVARNELGFA-RSKNATLDVA 226
C + + + L+V+
Sbjct: 189 GTNLTCQMKRQGAQVTTERTVQLNVS 214
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 34.7 bits (79), Expect = 0.015
Identities = 12/91 (13%), Positives = 17/91 (18%), Gaps = 15/91 (16%)
Query: 137 HPASAVVPRHEPTTLNCKADGYPEPRI--EWYKDGSLVSAEIGSHRILLPAGSLFFLSLV 194
P A V R LNC + R E + + L +
Sbjct: 8 QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRW--------LARQLVDI 59
Query: 195 HGKKDTDSGVYWCVARNELGFARSKNATLDV 225
C R +
Sbjct: 60 R----EPETQPVCFFRCA-RRTLQARGLIRT 85
>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_B 1k8i_B*
Length = 211
Score = 34.7 bits (80), Expect = 0.016
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 130 RVP---RITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLP 184
P ++ + EP L C G YP I W K+G LV +H+ P
Sbjct: 94 TRPPSVQVAKTTPF---NTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP 150
Query: 185 AG 186
G
Sbjct: 151 NG 152
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 34.6 bits (78), Expect = 0.026
Identities = 17/74 (22%), Positives = 20/74 (27%), Gaps = 17/74 (22%)
Query: 105 QKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG-YPEPRI 163
Q L L Y PP + L P + P P L C YP +
Sbjct: 281 QVTLELAVYKPPKVSLMP--------------ATLARAAPGEAPPELLCLVSHFYPSGGL 326
Query: 164 E--WYKDGSLVSAE 175
E W G
Sbjct: 327 EVEWELRGGPGGRS 340
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, immune system; HET: 16A; 1.32A
{Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B 3jvg_C*
2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 32.3 bits (74), Expect = 0.030
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLF 189
P++ + LNC A G +P I KDG + E + +
Sbjct: 5 PKVQVYSRFPASAGT-KNVLNCFAAGFHPPKISITLMKDGVPM--EGAQYSDMSFNDDWT 61
Query: 190 FLSLVH 195
F LVH
Sbjct: 62 FQRLVH 67
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 34.2 bits (77), Expect = 0.031
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 8/97 (8%)
Query: 121 FPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHR 180
H + + + L+C + W ++ +
Sbjct: 490 PAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQS--CEPG 546
Query: 181 ILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFAR 217
P LF +L G Y+C A+ E + R
Sbjct: 547 HQSPNCILFIENL----TAQQYGHYFCEAQ-EGSYFR 578
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 32.4 bits (74), Expect = 0.039
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLF 189
P++ + LNC A G +P I KDG + E + +
Sbjct: 25 PKVQVYSRFPASAGT-KNVLNCFAAGFHPPKISITLMKDGVPM--EGAQYSDMSFNDDWT 81
Query: 190 FLSLVH 195
F LVH
Sbjct: 82 FQRLVH 87
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 33.3 bits (76), Expect = 0.051
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADG-YPEP-RIEWYKDGSLVSAEIGSHRILLPAGSLF 189
P+ T P S V+ P TL C D +P I W ++ V+ +
Sbjct: 121 PQATVFPKSPVLLGQ-PNTLICFVDNIFPPVINITWLRNSKSVADGV-YETSFFVNRDYS 178
Query: 190 FLSLVH 195
F L +
Sbjct: 179 FHKLSY 184
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.8 bits (72), Expect = 0.066
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 20/112 (17%)
Query: 134 ITEHPASAVVPRHEPTTLNCK---ADGYPEPRIEWYKDGS------LVSAEIGSH----- 179
+ P S + C GY + ++W + G H
Sbjct: 4 TLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAK 63
Query: 180 ---RILLPAGSLFFLSLV-HGKKDTDSGVYWC--VARNELGFARSKNATLDV 225
R+ + +SL + + D Y C + G ++ +++
Sbjct: 64 YRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIEL 115
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 32.0 bits (72), Expect = 0.11
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 12/89 (13%)
Query: 137 HPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHG 196
P V +NC +P + + SL + + +S +
Sbjct: 8 RPKKLAVEPKGSLEVNCSTTC-NQPEVGGL-ETSLNKILLDEQ----AQWKHYLVSNI-- 59
Query: 197 KKDTDSGVYWCVARNELGFARSKNATLDV 225
+ V C G S N+ + V
Sbjct: 60 ---SHDTVLQCHFTCS-GKQESMNSNVSV 84
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 30.8 bits (70), Expect = 0.11
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 5/83 (6%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
I + S ++ + T+ C + S + F +
Sbjct: 10 ITIFPNS-SLMISQGTFVTVVCSYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEI 67
Query: 192 SLVHGKKDTDSGVYWCVARNELG 214
V +T +G Y C+ +
Sbjct: 68 GPV---NETITGHYSCIYSKGIT 87
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 32.2 bits (73), Expect = 0.12
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGY-PEPRIEWYKDGSLVSAEIGSHRILLPA------- 185
+ + S V E L+C P I+W++ I + +
Sbjct: 6 VIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSE 65
Query: 186 -----GSLFFLSLVHGKKDTDSGVYWCV 208
F +S+ D+G Y+CV
Sbjct: 66 STKRENMDFSISI-SNITPADAGTYYCV 92
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 32.0 bits (71), Expect = 0.14
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 14/67 (20%)
Query: 147 EPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYW 206
E L C D E I W D S G + K+ D+G Y
Sbjct: 22 EMVVLTC--DTPEEDGITWTLDQSSEVLGSGKTLTI------------QVKEFGDAGQYT 67
Query: 207 CVARNEL 213
C E+
Sbjct: 68 CHKGGEV 74
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 30.4 bits (69), Expect = 0.15
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADG--YPEPRIEWYKDGS-----LVSAEIGSHRILLPA 185
R+ + P S E T+NC Y WY+ S ++ G + + +
Sbjct: 2 RVDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNS 61
Query: 186 GSLFFLSL-VHGKKDTDSGVYWCVARNELGFAR 217
GS F SL ++ D G Y C G+
Sbjct: 62 GSKSF-SLRINDLTVEDGGTYRCGLGVAGGYCD 93
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 30.1 bits (68), Expect = 0.22
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 13/87 (14%)
Query: 132 PRITEHPASAVVPRHEPTTLNC----KADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGS 187
I + S ++ + T+ C K D Y + S +
Sbjct: 10 ITIFPNS-SLMISQGTFVTVVCSYSDKHDLY-----NMVRLEKDGSTFMEKSTEPYKTED 63
Query: 188 LFFLSLVHGKKDTDSGVYWCVARNELG 214
F + V +T +G Y C+ +
Sbjct: 64 EFEIGPV---NETITGHYSCIYSKGIT 87
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 30.6 bits (69), Expect = 0.42
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 102 KTWQKGLPLKKYHP-PSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADG-YP 159
K + G L S ++T+ +S +P + TLNC + +
Sbjct: 106 KLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWW 165
Query: 160 EPRIEWYK 167
I WYK
Sbjct: 166 SYYIFWYK 173
Score = 29.4 bits (66), Expect = 1.0
Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 18/94 (19%)
Query: 135 TEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK---DGSLV-----SAEIGSHRILLPAG 186
S + + C I WY + + S +
Sbjct: 6 EGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGIS 65
Query: 187 SLFFLSLVHGKKDT----------DSGVYWCVAR 210
+ + +K+ DSGVY+C
Sbjct: 66 PGKYDTYGSTRKNLRMILRNLIENDSGVYYCATW 99
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 29.8 bits (66), Expect = 0.44
Identities = 15/115 (13%), Positives = 26/115 (22%), Gaps = 18/115 (15%)
Query: 122 PGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRI 181
+ + V L C+ + + ++W G R
Sbjct: 29 KAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLY-FGEKRA 87
Query: 182 LLPAGSLFFLSLVHGKKDT-----------DSGVYWCVARNELGFARSKNATLDV 225
L + LV D G Y C R+ + + V
Sbjct: 88 L--RDNRI--QLVTSTPHELSISISNVALADEGEYTCSIFTMPV--RTAKSLVTV 136
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.5 bits (65), Expect = 0.44
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 12/112 (10%)
Query: 129 YRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYKDGSLVSAEIGSHRILLPA-- 185
+ R ++H A E + C P + W K + + L +
Sbjct: 16 LNIKRNSKHSAWT----GELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWE 71
Query: 186 ----GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDVAGKISTAT 233
+F L D+G Y C S + T+ V + ++
Sbjct: 72 ENRSVPVFVLHFKPIHLS-DNGSYSCSTNFNSQVINSHSVTIHVRERSQNSS 122
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 30.1 bits (68), Expect = 0.53
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 124 VHGDGYRVPRITEHPASAVVPRHEPTTLNCKA-DGYP-EPRIEWYKDGSLVSAEIGSHRI 181
V G P +T P S+ + TL C D YP + W D S V A + +
Sbjct: 104 VLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTP 163
Query: 182 LLPAGSLFFLS 192
+ + + S
Sbjct: 164 SKQSNNKYAAS 174
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport,
rhesus protein, transpo protein; HET: BOG; 1.30A
{Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Length = 407
Score = 30.4 bits (69), Expect = 0.53
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 211 NELGFARSKNATLDVAGKI 229
NE N ++++ +
Sbjct: 9 NEARLVAQYNYSINILAML 27
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 29.8 bits (67), Expect = 0.61
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
I + PA+ V P P +L C +G P + WY+
Sbjct: 4 IHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYR 37
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 29.5 bits (67), Expect = 0.68
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 150 TLNCKA-DGYPEPRIEWYKDGSLVSAEIGSHR 180
T+ C A +P+ + W DG+ + I + +
Sbjct: 133 TIVCVANKYFPDVTVTWEVDGTTQTTGIENSK 164
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 28.5 bits (64), Expect = 0.83
Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 19/95 (20%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADG--YPEPRIEWYKDGSLVSAEIGSHRILLPA-GSLF 189
R+ + P E T+NC WY+ GS + G +
Sbjct: 2 RVDQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPP------GSRNEESISDGGRY 55
Query: 190 FLSLVHGKKDT----------DSGVYWCVARNELG 214
++ G K DSG Y C + G
Sbjct: 56 VETVNRGSKSFSLRINDLTVKDSGTYRCKPESRYG 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.1
Identities = 7/16 (43%), Positives = 7/16 (43%), Gaps = 2/16 (12%)
Query: 106 KGL--PLKKYHPPSLP 119
K L LK Y S P
Sbjct: 23 KKLQASLKLYADDSAP 38
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 28.9 bits (65), Expect = 1.2
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
G G G +T+ P + V E TL+C+ + WY+
Sbjct: 121 SGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYR 172
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 28.0 bits (62), Expect = 1.2
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 15/88 (17%)
Query: 138 PASAVVPRHEPTTLNCK----ADGYPEPRIEWYKDGSLVSAEI------GSHRILLPAGS 187
P L C + W++D + E+ R+ A S
Sbjct: 14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASS 73
Query: 188 LFF----LSL-VHGKKDTDSGVYWCVAR 210
F L + + D+ +Y C
Sbjct: 74 RFLHDHQAELHIRDVRGHDASIYVCRVE 101
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 27.9 bits (62), Expect = 1.2
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 201 DSGVYWCVARNELGFARSKNATLDV 225
D+G Y C+ G +L++
Sbjct: 79 DAGEYGCMVDGARGPQILHRVSLNI 103
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain,
HTR-like protei protein structure initiative; HET: MSE
I3A; 1.73A {Haloarcula marismortui atcc 43049}
Length = 126
Score = 27.9 bits (63), Expect = 1.3
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 162 RIEWY---KDGSLVSAEIGSHRILLPAGSLFFLSLVH 195
+ E +DGS +S E+ R L G FL++
Sbjct: 88 KFEGLYERRDGSTMSVEVHLLRFNL-EGEDRFLAISR 123
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 29.0 bits (65), Expect = 1.4
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 113 YHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGY-PEP-RIEWYKDGS 170
P G G R P++ P S +L C G+ P +EW +G
Sbjct: 224 CPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ 283
Query: 171 LVS 173
+
Sbjct: 284 PEN 286
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 28.7 bits (64), Expect = 1.4
Identities = 5/34 (14%), Positives = 16/34 (47%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+++HP+ + + C++ + + WY+
Sbjct: 4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYR 37
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 28.0 bits (62), Expect = 1.5
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 17/74 (22%)
Query: 150 TLNCKADGYPE--PRIEWYKDGS------LVS-----AEIGSHRILL---PAGSLFFLSL 193
T+ C+ + W K+ S LV+ + R + P F +++
Sbjct: 29 TVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTM 88
Query: 194 VHGKKDTDSGVYWC 207
+++ DSG YWC
Sbjct: 89 TDLREE-DSGHYWC 101
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 28.4 bits (63), Expect = 1.6
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+ + P S V + T C + WY+
Sbjct: 3 VEQSPQSLHVQEGDSTNFTCSFPSSNFYALHWYR 36
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 28.9 bits (64), Expect = 1.7
Identities = 11/39 (28%), Positives = 12/39 (30%)
Query: 115 PPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNC 153
P P P + G GYR V R P C
Sbjct: 27 PSLRPAPPPISGGGYRARPAKAAATQKKVERKAPDAGGC 65
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 28.7 bits (64), Expect = 1.8
Identities = 5/34 (14%), Positives = 16/34 (47%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+++HP+ + + C++ + + WY+
Sbjct: 27 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYR 60
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 27.6 bits (61), Expect = 1.8
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 16/85 (18%)
Query: 138 PASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGS------LVS-----AEIGSHRILL-- 183
P + T+ C G+ W + LV E+ R+ +
Sbjct: 9 PTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKD 68
Query: 184 -PAGSLFFLSLVHGKKDTDSGVYWC 207
F +++ K D+ YWC
Sbjct: 69 NQKNRTFTVTMEDLMKT-DADTYWC 92
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 27.6 bits (62), Expect = 1.8
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 21/104 (20%)
Query: 134 ITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYK---DGSLV-----------SAEIGS 178
+T+ S V T++C + WYK G +V +A +G
Sbjct: 3 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGH 62
Query: 179 HRILLPAGSLFFLSLVHGKKD---TDSGVYWCVARNELGFARSK 219
+ + L+ DS VY+C R + G + +K
Sbjct: 63 YSLNFQKPKSSI-GLI--ITATQIEDSAVYFCAMRGDYGGSGNK 103
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 28.3 bits (62), Expect = 1.9
Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 25/184 (13%)
Query: 66 CLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKT------WQKG-LPLKKYHPPSL 118
C+ F + L+ + + N + W + L + + P
Sbjct: 76 CIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFY 135
Query: 119 PLFPGVHGDGYR------VPRITEHPASAVVPRHEPT----------TLNCKADGYPEPR 162
+ V G++ ++ HP + T C A G
Sbjct: 136 QVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAG 195
Query: 163 IEWYKDGS-LVSAEIGSHRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNA 221
+ G + A + ++ + ++V+ K D+G Y C+ R E G S A
Sbjct: 196 DRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK-RDAGKYRCMIRTEGGVGISNYA 254
Query: 222 TLDV 225
L V
Sbjct: 255 ELVV 258
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 27.7 bits (62), Expect = 1.9
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 134 ITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYK---DGSLVS-----------AEIGS 178
+T+ S V T++C + WYK G +V A +G
Sbjct: 3 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGH 62
Query: 179 HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELGFARSK 219
+ + ++ + DS VY+C R + G + +K
Sbjct: 63 YSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGSGNK 103
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 27.1 bits (60), Expect = 2.1
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 13/71 (18%)
Query: 150 TLNCKAD-GYPEPRIEWYKDGS------LVS------AEIGSHRILLPAGSLFFLSLVHG 196
++ C + + W + +V G I +L F +
Sbjct: 15 SVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLEN 74
Query: 197 KKDTDSGVYWC 207
+ D+G YWC
Sbjct: 75 LTEEDAGTYWC 85
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 27.7 bits (61), Expect = 2.3
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
P + P + L C+ G W
Sbjct: 10 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLF 45
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 28.2 bits (63), Expect = 2.4
Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 103 TWQKGLPLKKYHPPSLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNCKADGYPEPR 162
+ G L DG ++ + P S V E LNC +
Sbjct: 103 FFGHGTKLSVLGSADDAKKDAAKKDG----QVRQSPQSLTVWEGETAILNCSYENSAFDY 158
Query: 163 IEWYK 167
WY+
Sbjct: 159 FPWYQ 163
Score = 27.4 bits (61), Expect = 3.9
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 18/93 (19%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK---------------DGSLVSAEIGS 178
+T+ P + V TL+C + WY+ GS +I
Sbjct: 3 VTQSPRNKVAVTGGKVTLSCNQTNN-HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPD 61
Query: 179 HR-ILLPAGSLFFLSLVHGKKDTDSGVYWCVAR 210
P+ F L L + VY+C +
Sbjct: 62 GYKASRPSQENFSLILELATPS-QTSVYFCASG 93
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 28.3 bits (62), Expect = 2.4
Identities = 9/83 (10%), Positives = 21/83 (25%), Gaps = 8/83 (9%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
+ P V+ T C + + + + L+ L +
Sbjct: 199 SQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIH--------LDGENVAIKI 250
Query: 192 SLVHGKKDTDSGVYWCVARNELG 214
+ + + V + N G
Sbjct: 251 RNISVSASSGTNVVFTTEDNIFG 273
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 28.1 bits (62), Expect = 2.4
Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 21/111 (18%)
Query: 138 PASAVVPRHEPTTLNCKADGYPEP-----RIEWY-------KDGSLVSAEIGSHRILLPA 185
+ + P ++ T+ C I W+ K+ + P
Sbjct: 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPG 69
Query: 186 GSLFFLSLVHGK--------KDTDSGVYWCVARNELGFARSKNATLDVAGK 228
+ L G + ++G Y C A+ L+V
Sbjct: 70 AIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQ-GTVQLEVVAS 119
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 27.1 bits (60), Expect = 2.5
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 20/78 (25%)
Query: 150 TLNCKADG--YPEPRIEWYK--------------DGSLVSAEIGSHRILL---PAGSLFF 190
+ C + + W S S + RI+L L
Sbjct: 23 DVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLR 82
Query: 191 LSLVHGKKDTDSGVYWCV 208
+ +V+ + + DSG+Y CV
Sbjct: 83 VRMVNLQVE-DSGLYQCV 99
>3it8_D 2L protein; MHC class I homolog, cell membrane, cytokine, disulfide
bond glycoprotein, lipoprotein, membrane, myristate;
HET: NAG; 2.80A {Yaba-like disease virus}
Length = 324
Score = 28.1 bits (62), Expect = 2.7
Identities = 11/97 (11%), Positives = 20/97 (20%), Gaps = 23/97 (23%)
Query: 59 GFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRFSLCNNKTWQKGLPLKKYHP--P 116
FYP + ++ + +Y N + + + Y P P
Sbjct: 206 SFYPPDVITKWIE-------------SEHFKGEYK----YVNGRYYPEWGRKSNYEPGEP 248
Query: 117 SLPLFPGVHGDGYRVPRITEHPASAVVPRHEPTTLNC 153
P D + C
Sbjct: 249 GFPWNIKKDKDANTYSL----TDLVRTTSKMSSQPVC 281
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 26.9 bits (59), Expect = 2.8
Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 13/101 (12%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYKDGSLVSAEIGSHRILLPAGSLFFL 191
R+ V E + + W+ +G + + ++ A
Sbjct: 9 ARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIE 66
Query: 192 S-------LVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
++H K DSG + + +A L +
Sbjct: 67 QKGLQHRLILHAVKHQDSGALVGFSCPGV----QDSAALTI 103
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 27.5 bits (61), Expect = 3.1
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 131 VPRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
V + ++P +VPR + L C P + WY+
Sbjct: 1 VTLLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQ 37
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 26.7 bits (58), Expect = 3.4
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 130 RVPRITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYKDGSLVSAEIGSHRILLPAG-- 186
+ R +EH A +P L C P + W K ++ +
Sbjct: 14 YIKRQSEHSILA----GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 69
Query: 187 -SLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
S F L D+G Y C A + S + TL V
Sbjct: 70 ISFFILHFEP-VLPNDNGSYRCSANFQSNLIESHSTTLYV 108
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 26.5 bits (59), Expect = 3.7
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 133 RITEHPASAVVPRHEPTTLNCKADG--YPEPRIEWYKD--GS---LVSAEIGSHRILLPA 185
+ + P + E T+ C WY+ GS + G + +
Sbjct: 2 WVDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDK 61
Query: 186 GSLFFLSL-VHGKKDTDSGVYWCVARNELGFARSKNATLDVAGK 228
GS F SL + + DSG Y C A + V G
Sbjct: 62 GSKSF-SLRISDLRVEDSGTYKCQADYSPSCYSYPSLESAVEGA 104
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 26.8 bits (59), Expect = 3.7
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 18/75 (24%)
Query: 150 TLNCKAD---GYPEPRIEWYKDGS------LVS-----AEIGSHRILL---PAGSLFFLS 192
++ C R W + G+ L+S + + R L P F ++
Sbjct: 19 SITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVN 78
Query: 193 LVHGKKDTDSGVYWC 207
+ +D DSG Y C
Sbjct: 79 IAQLSQD-DSGRYKC 92
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, transferase; 2.40A {Neisseria meningitidis}
Length = 794
Score = 27.9 bits (62), Expect = 3.9
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 45 VSGFADLTQPPARGGFYPKPICLRFQDLLPQSKQGLMYLVGSQASPDYPNRF 96
G A L YP+ +R D +S + + G+ P N
Sbjct: 561 AEGVATLAAS-----VYPRKTIVRMSDF--KSNEYANLVGGNVYEPHEENPM 605
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 27.3 bits (60), Expect = 4.2
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+ + P S VP +LNC + WY+
Sbjct: 5 VQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYR 38
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 27.3 bits (60), Expect = 4.4
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+T+ A V L CK P + WY
Sbjct: 12 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYV 45
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 26.5 bits (59), Expect = 4.4
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADG-YPEPRIEWYK 167
+T+ V L C D Y P + WY+
Sbjct: 3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYR 37
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 26.4 bits (58), Expect = 4.4
Identities = 17/117 (14%), Positives = 30/117 (25%), Gaps = 23/117 (19%)
Query: 123 GVHGDGYRVPRITEHPASAVVPRHEPTTLNCKAD-GYPEPRIEWYK--DGSLVSAEIGSH 179
G G H V TLN ++ W+ D +V +
Sbjct: 1 GSSGSS-----GQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKS 55
Query: 180 RILLPA-----------GSLFFLSLVHGKKDTDSGVYWCVARNELGFARSKNATLDV 225
+ G+L+ + + D+ Y + G + L V
Sbjct: 56 KYFESKFKGRVRLDPQSGALYISKV----QKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 26.4 bits (58), Expect = 4.5
Identities = 6/36 (16%), Positives = 9/36 (25%)
Query: 132 PRITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
P + P + L C+ G W
Sbjct: 5 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLF 40
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 26.6 bits (58), Expect = 5.9
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 15/96 (15%)
Query: 134 ITEHPASAVVPRHEPTTLNCK-ADGYPEPRIEWYK--------------DGSLVSAEIGS 178
+T+ V E TL+C + WYK + G
Sbjct: 6 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGR 65
Query: 179 HRILLPAGSLFFLSLVHGKKDTDSGVYWCVARNELG 214
+ + F + + DS VY+C
Sbjct: 66 YSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYN 101
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 26.5 bits (58), Expect = 6.4
Identities = 11/90 (12%), Positives = 21/90 (23%), Gaps = 13/90 (14%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADG----------YPEPRIEW--YKDGSLVSAEIGSHRI 181
+ + P++ + + L C + Y
Sbjct: 4 VEQSPSALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAF 63
Query: 182 LLPAGSLFFLSLVHGKKDTDSGVYWCVARN 211
L + + DSG Y+C A
Sbjct: 64 DSKERRYSTLHI-RDAQLEDSGTYFCAADT 92
>3huj_A R3G1, T-cell surface glycoprotein CD1D; CD1D,
alpha-galactosylceramide, protein complex, cell
membrane, disulfide bond, endosome; HET: NDG BMA NAG
AGH; 2.50A {Homo sapiens} PDB: 2po6_A* 3u0p_A* 3sdx_A*
1zt4_A* 3tzv_C*
Length = 284
Score = 26.8 bits (60), Expect = 6.5
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 16/47 (34%)
Query: 28 PKA--SHSPSSRPDQNYLR--VSGFADLTQPPARGGFYPKPICLRFQ 70
PKA S PS P + L VSGF YPKP+ +++
Sbjct: 188 PKAWLSRGPSPGPGRLLLVCHVSGF------------YPKPVWVKWM 222
>3g08_A T-cell surface glycoprotein CD1D1; antigen presentation,
glycolipid, NKT cells, cell membrane, glycoprotein,
immune response, immunoglobulin domain; HET: NAG FEE
PLM; 1.60A {Mus musculus} PDB: 1z5l_A* 2gaz_A* 2q7y_A*
2akr_A* 3ma7_C* 3o8x_A* 3o9w_A* 3qux_A* 3quy_A* 3quz_A*
3rzc_A* 3t1f_A* 3ta3_A* 3tvm_A* 3ubx_A* 3ilp_A* 3ilq_C*
3rtq_A* 3rug_A* 3ard_A* ...
Length = 285
Score = 26.8 bits (60), Expect = 6.6
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 16/42 (38%)
Query: 28 PKA--SHSPSSRPDQNYLR--VSGFADLTQPPARGGFYPKPI 65
P A S PSS L VSGF YPKP+
Sbjct: 189 PVAWLSSVPSSAHGHRQLVCHVSGF------------YPKPV 218
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal,
immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP:
b.1.1.2 d.19.1.1
Length = 315
Score = 26.8 bits (60), Expect = 6.8
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 16/42 (38%)
Query: 28 PKA--SHSPSSRPDQNYLR--VSGFADLTQPPARGGFYPKPI 65
P A S PSS L VSGF YPKP+
Sbjct: 186 PVAWLSSVPSSAHGHRQLVCHVSGF------------YPKPV 215
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 25.9 bits (57), Expect = 7.3
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 20/78 (25%)
Query: 150 TLNCKADG--YPEPRIEWYK--------------DGSLVSAEIGSHRILL---PAGSLFF 190
+ C + + W S S + RI+L L
Sbjct: 18 DVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLR 77
Query: 191 LSLVHGKKDTDSGVYWCV 208
+ +V+ + + DSG+Y CV
Sbjct: 78 VRMVNLQVE-DSGLYQCV 94
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 26.5 bits (59), Expect = 7.8
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 16/47 (34%)
Query: 28 PKA--SHSPSSRPDQNYLR--VSGFADLTQPPARGGFYPKPICLRFQ 70
P+A S PS P + L VSGF YPKP+ + +
Sbjct: 294 PEAWLSCGPSPGPGRLQLVCHVSGF------------YPKPVWVMWM 328
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 25.4 bits (56), Expect = 8.0
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 150 TLNCKAD-GYPEPRIEWYK-------------DGSLVSAEIGSHRILL-PAGSLFFLSLV 194
T+ C+ G+ + + W + D S + I +F +++
Sbjct: 20 TVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTME 79
Query: 195 HGKKDTDSGVYWC 207
+ D+G+YWC
Sbjct: 80 DLRMS-DAGIYWC 91
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 26.2 bits (57), Expect = 8.8
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+ + P S ++ + TL C P + WYK
Sbjct: 6 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYK 39
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 26.1 bits (57), Expect = 8.9
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+T+ + ++ +NC P + WY
Sbjct: 3 VTQMQGQVTLSENDFLFINCTYSTTGYPTLFWYV 36
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 26.2 bits (57), Expect = 9.5
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 134 ITEHPASAVVPRHEPTTLNCKADGYPEPRIEWYK 167
+ + P S VV + E L C P+ + WYK
Sbjct: 4 VEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWYK 37
>2h26_A CD1B antigen, T-cell surface glycoprotein CD1B; lipid, endogenous
ligand, phosphatidylcholine, MHC, antigen presentation,
immune system; HET: NAG FUC 6PL 6UL; 1.80A {Homo
sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3t8x_A* 1gzq_A*
1gzp_A* 1uqs_A* 3l9r_A*
Length = 286
Score = 26.0 bits (58), Expect = 10.0
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 16/42 (38%)
Query: 28 PKA--SHSPSSRPDQNYLR--VSGFADLTQPPARGGFYPKPI 65
P+A S PS P + L VSGF YPKP+
Sbjct: 187 PEAWLSSGPSPGPGRLQLVCHVSGF------------YPKPV 216
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.425
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,576,890
Number of extensions: 199556
Number of successful extensions: 1211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 834
Number of HSP's successfully gapped: 444
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)