BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18194
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 41/46 (89%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREY 46
MVA L PA ++YDE+LSTLR+ANRAKNI NKP +NEDPKDT+LRE+
Sbjct: 350 MVATLGPASHSYDESLSTLRFANRAKNIKNKPRVNEDPKDTLLREF 395
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQ 47
MVA + PA N +ETL+TLRYANRAKNI NKP +NEDPKD +LRE+Q
Sbjct: 326 MVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 34/43 (79%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTML 43
M A +SPA NYDET+STLRYA+RAK I NKP INEDPKD +
Sbjct: 308 MCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 28/35 (80%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHIN 35
MVA LSPAD NYDETLSTLRYA+RAK I N +N
Sbjct: 343 MVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 377
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
MVA LSPAD NYDETLSTLRYA+RAK I N +N
Sbjct: 327 MVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 28/35 (80%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHIN 35
MVA LSPAD NYDETLSTLRYA+RAK I N +N
Sbjct: 327 MVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
MVA LSPAD NYDETLSTLRYA+RAK I N +N
Sbjct: 327 MVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
++A +SPA N +ETLSTL YA+RAKNI NKP +N+
Sbjct: 332 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
++A +SPA N +ETLSTL YA+RAKNI NKP +N+
Sbjct: 323 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
++A +SPA N +ETLSTL YA+RAKNI NKP +N+
Sbjct: 332 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
++A +SPA N +ETLSTL YA+RAKNI NKP +N+
Sbjct: 331 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
++A +SPA N +ETLSTL YA+RAKNI NKP +N+
Sbjct: 332 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
++A +SPA N +ETLSTL YA+RAKNI NKP +N+
Sbjct: 332 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
++A +SPA N +ETLSTL YA+RAKNI NKP +N+
Sbjct: 332 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
++A +SPA N +ETLSTL YA+RAKNI NKP +N+
Sbjct: 334 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
++A +SP + +ETLSTL YA+RAKNI NKP +N+
Sbjct: 334 IIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKP 32
++A +SPA N +ETLSTL YA+RAKNI NKP
Sbjct: 317 IIATISPASLNLEETLSTLEYAHRAKNILNKP 348
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 24/26 (92%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAK 26
MVA +SPA +NYDETLSTLRYA+RAK
Sbjct: 323 MVATVSPAADNYDETLSTLRYADRAK 348
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
M+AC+SP D YDETLSTLRYA++AK I + +N+
Sbjct: 388 MIACISPTD--YDETLSTLRYADQAKRIRTRAVVNQ 421
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 24/26 (92%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAK 26
M+AC+SP+ +++DETL+TL YA+RA+
Sbjct: 319 MIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 24/26 (92%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAK 26
M+AC+SP+ +++DETL+TL YA+RA+
Sbjct: 319 MIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNI 28
M+A +SP+ YD+T +TL+YANRAK+I
Sbjct: 328 MIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDT 41
M +SPA++N DET ++L YA+R ++I N P N K+
Sbjct: 300 MFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEV 340
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKP--HIN 35
M +SPA++N DET ++L YA+R + I N P HI+
Sbjct: 308 MFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHIS 344
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHIN 35
++ C SP+ N ETLSTLR+ RAK+I NK +N
Sbjct: 304 IINC-SPSSYNDAETLSTLRFGMRAKSIKNKAKVN 337
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINED-PKDTMLREYQEE 49
+V C SPA N ET STL + RAK + N +NE+ + R Y++E
Sbjct: 306 IVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKE 355
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKD 40
++ ++P ++DETL+ L++A+ AK + N P++NE D
Sbjct: 303 IICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTD 340
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHIN 35
+V C SP+ N ET STL + RAK I N +N
Sbjct: 298 IVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHIN 35
+V C SP+ N ET STL + RAK I N +N
Sbjct: 298 IVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPH 33
M+A +SP ++ + TL+TLRYA+R K ++ PH
Sbjct: 355 MIATISPGISSCEYTLNTLRYADRVKELS--PH 385
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHIN 35
+V C SP+ N ET STL + RAK I N +N
Sbjct: 45 IVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN 79
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHIN 35
+V C SP+ N ET STL + RAK I N +N
Sbjct: 49 IVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN 83
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
++A ++P Y +T+S L +A R+K + N+P NE
Sbjct: 320 LIANIAPERRFYLDTVSALNFAARSKEVINRPFTNE 355
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNI 28
M+A +SP + + TL+TLRYANR K +
Sbjct: 393 MIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNI 28
+AC+SP + ETLSTLR+ AK +
Sbjct: 308 FLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIA 29
+AC+SP + ETLSTLR+ AK A
Sbjct: 308 FLACISPHQCDLSETLSTLRFGTSAKAAA 336
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIAN 30
M+A +SP + ++TL+TLRY++R KN N
Sbjct: 304 MIANISPTISCCEQTLNTLRYSSRVKNKGN 333
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIA 29
M+A +SP ++ + TL+TLRYA+R K ++
Sbjct: 375 MIAMISPGISSCEYTLNTLRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIA 29
M+A +SP ++ + TL+TLRYA+R K ++
Sbjct: 303 MIAMISPGISSCEYTLNTLRYADRVKELS 331
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNI 28
+V C SP+ N ET STL + RAK I
Sbjct: 298 IVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNI 28
MV +SP + N ETL +L++A R +++
Sbjct: 301 MVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|3QBM|A Chain A, Crystal Structure Of A Tetr Transcriptional Regulator
(Caur_2221) From Chloroflexus Aurantiacus J-10-Fl At
1.80 A Resolution
pdb|3QBM|B Chain B, Crystal Structure Of A Tetr Transcriptional Regulator
(Caur_2221) From Chloroflexus Aurantiacus J-10-Fl At
1.80 A Resolution
Length = 199
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 64 PLSGGVCMMNSSSAMDSTTPLEKEKLRL---EYEAEMEKLREQYNAERNSKSKMEADLQA 120
PL GG ++N++ D T P +E++R E+ + L + A + +++AD A
Sbjct: 99 PLVGGCPILNTAIESDDTNPXLRERVRAVIDEWRETIRTLVQTGIARGEIRPEVDADRLA 158
Query: 121 L 121
L
Sbjct: 159 L 159
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 60 SGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEKLR---EQYNAERNSKS 112
SG+ PL+GG ++ SA LE E + E +EK + E Y A KS
Sbjct: 35 SGASPLAGGYILITGESATLYVPELEYEMAKEESNIPVEKFKKMDEFYKALEGIKS 90
>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase
pdb|4DL0|E Chain E, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase
pdb|4EFA|E Chain E, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase - Second
Conformation
Length = 233
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 36 EDPKDTMLREYQEEIRQ--LRALLESSGSVP---LSGGVCMMNSSSAMDSTTPLEKEKLR 90
E KD ++REY E+ ++ L ++ S+ + +SGGV + N+S ++ LE E+L+
Sbjct: 150 ESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDLVSGGVVVSNASDKIEINNTLE-ERLK 208
Query: 91 LEYEAEMEKLR 101
L E + +R
Sbjct: 209 LLSEEALPAIR 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.123 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,929,627
Number of Sequences: 62578
Number of extensions: 135136
Number of successful extensions: 441
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 63
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.7 bits)