Query psy18194
Match_columns 157
No_of_seqs 183 out of 1297
Neff 6.7
Searched_HMMs 46136
Date Sat Aug 17 01:14:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245|consensus 99.7 1.1E-16 2.4E-21 148.0 13.4 61 1-61 321-381 (1221)
2 KOG0243|consensus 99.7 9.8E-16 2.1E-20 142.6 13.3 61 1-61 363-424 (1041)
3 KOG4280|consensus 99.5 9.2E-15 2E-19 130.4 6.4 62 1-62 309-370 (574)
4 KOG0241|consensus 99.5 1.7E-13 3.6E-18 126.6 13.6 61 1-61 324-384 (1714)
5 KOG0244|consensus 99.3 2.1E-11 4.5E-16 112.7 10.9 61 1-61 290-350 (913)
6 PLN03188 kinesin-12 family pro 99.1 1.7E-10 3.6E-15 109.6 6.0 57 1-57 407-469 (1320)
7 KOG0242|consensus 99.0 2.2E-09 4.7E-14 98.4 8.3 61 1-61 304-365 (675)
8 KOG0240|consensus 98.5 2.3E-07 5E-12 82.7 5.5 38 1-38 304-341 (607)
9 COG5059 KIP1 Kinesin-like prot 98.1 2.9E-06 6.3E-11 76.7 5.3 36 1-36 309-344 (568)
10 KOG0246|consensus 97.9 5.9E-06 1.3E-10 74.0 2.5 32 1-32 514-545 (676)
11 KOG0239|consensus 95.6 0.0047 1E-07 57.1 1.0 35 1-35 613-647 (670)
12 KOG0247|consensus 94.9 0.43 9.4E-06 44.6 11.5 36 1-36 409-444 (809)
13 PRK10884 SH3 domain-containing 85.5 11 0.00023 30.1 9.3 22 40-61 92-113 (206)
14 PF09726 Macoilin: Transmembra 79.6 17 0.00038 34.1 9.6 23 40-62 417-439 (697)
15 PF12325 TMF_TATA_bd: TATA ele 71.0 38 0.00083 24.8 10.3 18 41-58 23-40 (120)
16 PF08581 Tup_N: Tup N-terminal 64.7 41 0.0009 22.8 9.9 50 90-139 27-76 (79)
17 KOG2129|consensus 62.9 1.2E+02 0.0025 27.3 11.1 35 26-60 235-272 (552)
18 PF05529 Bap31: B-cell recepto 61.5 67 0.0014 24.7 7.9 35 92-126 158-192 (192)
19 PRK11637 AmiB activator; Provi 61.4 1.1E+02 0.0023 26.8 9.9 45 92-136 86-130 (428)
20 PF08317 Spc7: Spc7 kinetochor 61.0 90 0.0019 26.3 9.2 15 44-58 187-201 (325)
21 COG3883 Uncharacterized protei 61.0 77 0.0017 26.4 8.5 43 91-133 69-111 (265)
22 KOG0963|consensus 59.1 93 0.002 29.0 9.3 22 40-61 248-269 (629)
23 PLN03188 kinesin-12 family pro 58.4 62 0.0013 32.7 8.5 48 92-139 1208-1255(1320)
24 PF06548 Kinesin-related: Kine 55.5 1.1E+02 0.0025 27.5 9.0 47 92-138 438-484 (488)
25 PF08614 ATG16: Autophagy prot 54.8 98 0.0021 24.0 9.9 38 91-128 147-184 (194)
26 KOG2391|consensus 54.3 1.2E+02 0.0025 26.4 8.6 43 92-134 243-285 (365)
27 PF00038 Filament: Intermediat 53.9 1.2E+02 0.0027 24.8 9.3 35 92-126 79-113 (312)
28 PF07798 DUF1640: Protein of u 52.7 1E+02 0.0022 23.6 10.0 20 114-133 125-144 (177)
29 PRK11637 AmiB activator; Provi 51.9 1.6E+02 0.0035 25.6 10.0 42 92-133 93-134 (428)
30 KOG2129|consensus 50.9 1.9E+02 0.0041 26.1 11.6 25 41-65 208-232 (552)
31 COG2433 Uncharacterized conser 50.6 91 0.002 29.1 7.8 33 92-124 478-510 (652)
32 PF14988 DUF4515: Domain of un 49.3 1.3E+02 0.0029 23.8 8.8 36 83-118 35-70 (206)
33 PRK00888 ftsB cell division pr 48.4 87 0.0019 22.1 6.1 32 92-123 31-62 (105)
34 KOG0577|consensus 47.7 1.5E+02 0.0033 28.2 8.8 29 5-33 434-462 (948)
35 KOG4807|consensus 47.1 2.1E+02 0.0046 25.6 9.7 29 40-68 473-501 (593)
36 PF10267 Tmemb_cc2: Predicted 46.0 1.4E+02 0.0031 26.3 8.1 28 109-136 258-285 (395)
37 PF13094 CENP-Q: CENP-Q, a CEN 44.9 1.3E+02 0.0028 22.5 10.0 49 91-139 44-92 (160)
38 PF14282 FlxA: FlxA-like prote 44.6 1.1E+02 0.0024 21.6 9.1 54 40-108 18-71 (106)
39 KOG4196|consensus 44.2 1.2E+02 0.0027 22.6 6.4 37 92-128 78-114 (135)
40 PF00170 bZIP_1: bZIP transcri 43.1 84 0.0018 19.8 7.1 30 92-121 30-59 (64)
41 KOG0161|consensus 42.5 2.2E+02 0.0048 30.3 9.9 50 86-135 1095-1144(1930)
42 PF08172 CASP_C: CASP C termin 42.3 1.7E+02 0.0037 24.0 7.7 47 89-135 87-133 (248)
43 PF12777 MT: Microtubule-bindi 42.1 1.5E+02 0.0033 25.1 7.7 39 90-128 244-282 (344)
44 KOG1962|consensus 41.8 1.9E+02 0.0041 23.4 8.9 45 92-136 162-209 (216)
45 KOG4673|consensus 40.1 3.2E+02 0.0069 26.3 9.7 21 40-60 494-514 (961)
46 TIGR03185 DNA_S_dndD DNA sulfu 40.0 3E+02 0.0066 25.4 11.6 30 92-121 432-461 (650)
47 smart00787 Spc7 Spc7 kinetocho 40.0 2.3E+02 0.005 24.0 9.0 32 92-123 229-260 (312)
48 PF04977 DivIC: Septum formati 39.6 97 0.0021 19.8 4.9 30 92-121 21-50 (80)
49 PRK10803 tol-pal system protei 37.0 2.3E+02 0.0051 23.1 8.7 48 84-131 57-104 (263)
50 PRK13729 conjugal transfer pil 36.6 2E+02 0.0043 26.0 7.7 41 92-136 73-120 (475)
51 PF06005 DUF904: Protein of un 36.1 1.3E+02 0.0028 19.9 6.7 28 94-121 24-51 (72)
52 KOG4348|consensus 36.1 2E+02 0.0042 26.2 7.4 57 39-124 567-623 (627)
53 PF08657 DASH_Spc34: DASH comp 36.0 2.3E+02 0.0049 23.4 7.5 22 41-62 194-215 (259)
54 PF06156 DUF972: Protein of un 35.7 1.6E+02 0.0035 20.9 8.2 37 92-128 12-48 (107)
55 COG2433 Uncharacterized conser 34.8 3.9E+02 0.0085 25.1 9.6 15 43-57 431-445 (652)
56 PF07544 Med9: RNA polymerase 34.5 1.4E+02 0.0031 20.0 7.4 23 40-62 27-49 (83)
57 KOG0977|consensus 34.1 3E+02 0.0064 25.4 8.5 19 43-61 58-76 (546)
58 PF13851 GAS: Growth-arrest sp 34.0 2.3E+02 0.0051 22.2 8.4 39 94-132 99-137 (201)
59 PF11262 Tho2: Transcription f 34.0 2.8E+02 0.006 23.1 8.8 65 44-126 27-91 (298)
60 PLN03230 acetyl-coenzyme A car 33.1 2E+02 0.0043 25.7 7.0 42 15-56 54-95 (431)
61 COG4942 Membrane-bound metallo 32.9 3.4E+02 0.0073 24.2 8.4 20 41-60 38-57 (420)
62 COG1382 GimC Prefoldin, chaper 32.9 2E+02 0.0043 21.1 7.2 45 85-129 67-111 (119)
63 PF04420 CHD5: CHD5-like prote 32.3 2.2E+02 0.0048 21.5 6.6 23 39-61 38-60 (161)
64 PF10146 zf-C4H2: Zinc finger- 32.0 2.8E+02 0.006 22.5 9.9 17 40-56 31-47 (230)
65 PF09726 Macoilin: Transmembra 30.1 3.8E+02 0.0083 25.4 8.8 17 39-55 423-439 (697)
66 PF08232 Striatin: Striatin fa 29.8 2.3E+02 0.005 20.9 7.5 45 90-134 27-71 (134)
67 KOG4196|consensus 29.8 2.4E+02 0.0052 21.1 6.6 30 92-121 85-114 (135)
68 PF00038 Filament: Intermediat 29.7 3.1E+02 0.0068 22.4 9.1 7 113-119 241-247 (312)
69 COG2262 HflX GTPases [General 29.5 2.5E+02 0.0055 24.9 7.1 29 85-113 154-182 (411)
70 KOG0995|consensus 28.9 4.8E+02 0.01 24.3 9.2 22 40-61 307-328 (581)
71 smart00338 BRLZ basic region l 28.7 1.5E+02 0.0033 18.5 6.6 30 92-121 30-59 (65)
72 PF15070 GOLGA2L5: Putative go 28.6 4.9E+02 0.011 24.3 10.5 22 40-61 49-70 (617)
73 KOG4302|consensus 28.2 4.4E+02 0.0095 24.9 8.7 79 41-130 124-202 (660)
74 KOG4005|consensus 28.1 3.5E+02 0.0076 22.5 8.5 34 91-124 93-126 (292)
75 PF11068 YlqD: YlqD protein; 27.9 2.5E+02 0.0055 20.7 8.2 31 29-59 8-38 (131)
76 KOG0972|consensus 27.3 3.3E+02 0.0071 23.4 7.1 12 20-31 263-274 (384)
77 KOG0804|consensus 26.7 3.7E+02 0.008 24.4 7.6 24 114-137 422-445 (493)
78 PF15035 Rootletin: Ciliary ro 26.7 3.1E+02 0.0067 21.4 12.0 37 92-128 78-114 (182)
79 PF13118 DUF3972: Protein of u 26.5 2.7E+02 0.0059 20.6 7.0 52 86-137 69-123 (126)
80 PF04849 HAP1_N: HAP1 N-termin 26.3 4.1E+02 0.0089 22.6 10.6 41 93-133 253-293 (306)
81 PRK13729 conjugal transfer pil 25.5 3.4E+02 0.0074 24.6 7.3 37 89-125 77-120 (475)
82 PF07334 IFP_35_N: Interferon- 25.3 2.1E+02 0.0046 19.3 4.6 10 112-121 10-19 (76)
83 PF12240 Angiomotin_C: Angiomo 24.7 3.7E+02 0.008 21.6 7.8 56 43-109 30-85 (205)
84 PF15030 DUF4527: Protein of u 24.6 4E+02 0.0086 22.2 6.9 74 40-125 15-88 (277)
85 PF12325 TMF_TATA_bd: TATA ele 24.2 2.9E+02 0.0062 20.1 8.5 27 34-60 9-35 (120)
86 PF09730 BicD: Microtubule-ass 24.0 4E+02 0.0086 25.5 7.7 18 103-120 164-181 (717)
87 PF15254 CCDC14: Coiled-coil d 23.7 6.9E+02 0.015 24.3 10.6 16 43-58 389-404 (861)
88 TIGR02894 DNA_bind_RsfA transc 23.7 3.5E+02 0.0075 20.9 7.8 39 92-130 108-146 (161)
89 TIGR01010 BexC_CtrB_KpsE polys 23.3 4.5E+02 0.0098 22.1 9.3 88 41-136 214-305 (362)
90 PF04880 NUDE_C: NUDE protein, 23.0 2.2E+02 0.0048 22.0 5.0 18 108-125 30-47 (166)
91 PF04201 TPD52: Tumour protein 22.6 3.7E+02 0.008 20.8 6.4 39 82-124 27-65 (162)
92 COG5509 Uncharacterized small 22.6 1.4E+02 0.0029 19.5 3.1 22 40-61 31-52 (65)
93 PF04568 IATP: Mitochondrial A 22.0 2.7E+02 0.0058 19.7 4.9 8 82-89 53-60 (100)
94 KOG4466|consensus 22.0 4.9E+02 0.011 22.0 9.3 20 44-63 38-57 (291)
95 PF10392 COG5: Golgi transport 21.7 3.2E+02 0.0069 19.7 10.1 48 13-60 5-52 (132)
96 PF10212 TTKRSYEDQ: Predicted 21.5 4.9E+02 0.011 23.9 7.5 30 105-134 465-494 (518)
97 TIGR03752 conj_TIGR03752 integ 21.0 6.3E+02 0.014 22.9 8.3 9 114-122 128-136 (472)
98 PF10211 Ax_dynein_light: Axon 20.9 4.1E+02 0.0088 20.7 7.7 34 92-125 124-157 (189)
99 KOG3990|consensus 20.9 5.1E+02 0.011 21.8 8.0 23 40-62 224-246 (305)
100 TIGR02338 gimC_beta prefoldin, 20.7 3.1E+02 0.0067 19.2 9.2 43 86-128 65-107 (110)
101 PF10212 TTKRSYEDQ: Predicted 20.6 5.8E+02 0.013 23.4 7.8 17 44-60 437-453 (518)
102 KOG0241|consensus 20.6 3.2E+02 0.007 27.6 6.4 34 108-141 392-425 (1714)
103 TIGR00219 mreC rod shape-deter 20.2 3.9E+02 0.0086 22.1 6.3 39 100-138 71-109 (283)
104 KOG0994|consensus 20.1 9.9E+02 0.021 24.8 12.3 44 15-60 1177-1220(1758)
No 1
>KOG0245|consensus
Probab=99.71 E-value=1.1e-16 Score=148.00 Aligned_cols=61 Identities=57% Similarity=0.932 Sum_probs=59.6
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHccC
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
|||+|||++.||+|||||||||.|||+|+|.|+||++|...+|++|++|+.+|+..|...+
T Consensus 321 MIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~~ 381 (1221)
T KOG0245|consen 321 MIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQG 381 (1221)
T ss_pred hhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999999998775
No 2
>KOG0243|consensus
Probab=99.66 E-value=9.8e-16 Score=142.64 Aligned_cols=61 Identities=49% Similarity=0.753 Sum_probs=57.9
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCC-chHHHHHHHHHHHHHHHHHHHccC
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINED-PKDTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~-~~~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
|||||||+..+++||+|||.||.|||+|+|+|.+|.. .+++++++|-.||.+|+..|.+.+
T Consensus 363 iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaR 424 (1041)
T KOG0243|consen 363 IIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAR 424 (1041)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 7999999999999999999999999999999999986 678999999999999999998764
No 3
>KOG4280|consensus
Probab=99.53 E-value=9.2e-15 Score=130.36 Aligned_cols=62 Identities=63% Similarity=0.959 Sum_probs=59.6
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHccCC
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLESSGS 62 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~~~~i~~l~~ei~~L~~~L~~~~~ 62 (157)
|||||||++++++||+|||+||+|||.|+|+|++|++++++.++.|+.+|.+|+.+|...+.
T Consensus 309 mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 309 MIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPGGS 370 (574)
T ss_pred EEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccccC
Confidence 89999999999999999999999999999999999999999999999999999999987643
No 4
>KOG0241|consensus
Probab=99.52 E-value=1.7e-13 Score=126.55 Aligned_cols=61 Identities=54% Similarity=0.860 Sum_probs=58.9
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHccC
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
||+||||++.+|+||+||||||.|||+|+|.+.||.+|....|+++++|+..|+.+|....
T Consensus 324 MiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae 384 (1714)
T KOG0241|consen 324 MIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAE 384 (1714)
T ss_pred EEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 8999999999999999999999999999999999999999999999999999999998754
No 5
>KOG0244|consensus
Probab=99.29 E-value=2.1e-11 Score=112.73 Aligned_cols=61 Identities=49% Similarity=0.773 Sum_probs=58.7
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHccC
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
|||||||+.+++.||++||+||.||+.|+|+|++|.++....+..++.+|..|+..|....
T Consensus 290 miaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 290 MIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred eeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999999999999999999999999988775
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.07 E-value=1.7e-10 Score=109.60 Aligned_cols=57 Identities=39% Similarity=0.583 Sum_probs=50.5
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCch------HHHHHHHHHHHHHHHHHH
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPK------DTMLREYQEEIRQLRALL 57 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~------~~~i~~l~~ei~~L~~~L 57 (157)
|||||||+..+++||++||+||+|||.|+|+|++|.... ..+|+.|+.||.+|+...
T Consensus 407 MIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 407 MVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred EEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999998742 347788888888888774
No 7
>KOG0242|consensus
Probab=98.95 E-value=2.2e-09 Score=98.36 Aligned_cols=61 Identities=38% Similarity=0.573 Sum_probs=53.7
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCch-HHHHHHHHHHHHHHHHHHHccC
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPK-DTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~-~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
|||||+|+..||+||.+||.||+|||+|++++.+|.... ...+..++.++..|+.++....
T Consensus 304 ~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~ 365 (675)
T KOG0242|consen 304 IIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLK 365 (675)
T ss_pred EEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhc
Confidence 799999999999999999999999999999999998754 4555666799999999987644
No 8
>KOG0240|consensus
Probab=98.46 E-value=2.3e-07 Score=82.66 Aligned_cols=38 Identities=45% Similarity=0.626 Sum_probs=36.2
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCc
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDP 38 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~ 38 (157)
+|+|+||+..+-.||.|||+|++|||.|+|.+++|...
T Consensus 304 lIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~ 341 (607)
T KOG0240|consen 304 LIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLEL 341 (607)
T ss_pred EEEecCCccccccccccchhhccccccccchhhhhhHh
Confidence 58899999999999999999999999999999999874
No 9
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.15 E-value=2.9e-06 Score=76.68 Aligned_cols=36 Identities=42% Similarity=0.799 Sum_probs=34.9
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecC
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~ 36 (157)
|||||+|+..+++||.+||+||+|||+|+|.+.+|.
T Consensus 309 ~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 309 VICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 799999999999999999999999999999999995
No 10
>KOG0246|consensus
Probab=97.90 E-value=5.9e-06 Score=74.04 Aligned_cols=32 Identities=41% Similarity=0.662 Sum_probs=29.2
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccc
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKP 32 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~ 32 (157)
|||||||...+.+-||||||||.|+|......
T Consensus 514 MIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 514 MIATISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 89999999999999999999999999875444
No 11
>KOG0239|consensus
Probab=95.57 E-value=0.0047 Score=57.12 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=31.6
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceec
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHIN 35 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn 35 (157)
|+++|||...++.||+++|+||.|++.+...+-..
T Consensus 613 mfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 613 MFVNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred eEEEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 78999999999999999999999999998776543
No 12
>KOG0247|consensus
Probab=94.93 E-value=0.43 Score=44.64 Aligned_cols=36 Identities=28% Similarity=0.655 Sum_probs=33.0
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecC
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~ 36 (157)
||+||+|.+.+|+|+++.|+||.=|..|.+...++.
T Consensus 409 MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~ 444 (809)
T KOG0247|consen 409 MIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIK 444 (809)
T ss_pred EEEecCCchhhHHHHHHHHHHHHhcccccccCcccc
Confidence 899999999999999999999999999988777754
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.50 E-value=11 Score=30.14 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHccC
Q psy18194 40 DTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
...+..++.++..|+.+|+...
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999988764
No 14
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.57 E-value=17 Score=34.14 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHccCC
Q psy18194 40 DTMLREYQEEIRQLRALLESSGS 62 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~~~ 62 (157)
...+..|..+|++|+.+|....+
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq 439 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQ 439 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Confidence 45677899999999999987764
No 15
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.02 E-value=38 Score=24.76 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18194 41 TMLREYQEEIRQLRALLE 58 (157)
Q Consensus 41 ~~i~~l~~ei~~L~~~L~ 58 (157)
+.|+.+..|+..++.++.
T Consensus 23 s~lr~~E~E~~~l~~el~ 40 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELA 40 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555443
No 16
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=64.68 E-value=41 Score=22.79 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccc
Q psy18194 90 RLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNNSIN 139 (157)
Q Consensus 90 ~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~~~~~ 139 (157)
..+|+.++...-.++...+.....|+..-..++..|+..+..|...|..+
T Consensus 27 ~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 27 KDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677777777777788888888899999999999999999998887543
No 17
>KOG2129|consensus
Probab=62.85 E-value=1.2e+02 Score=27.33 Aligned_cols=35 Identities=26% Similarity=0.517 Sum_probs=24.9
Q ss_pred hhhhccceecCCc---hHHHHHHHHHHHHHHHHHHHcc
Q psy18194 26 KNIANKPHINEDP---KDTMLREYQEEIRQLRALLESS 60 (157)
Q Consensus 26 k~I~n~~~vn~~~---~~~~i~~l~~ei~~L~~~L~~~ 60 (157)
+.|.+.|.+..+. ....|+.|+.||.+||..|...
T Consensus 235 rdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~A 272 (552)
T KOG2129|consen 235 RDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRA 272 (552)
T ss_pred hhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555553 2567888999999999998755
No 18
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.49 E-value=67 Score=24.74 Aligned_cols=35 Identities=17% Similarity=0.443 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQ 126 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 126 (157)
...+++.+++.++.....+...|.++...+..+||
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 56677777888887777788888888888877764
No 19
>PRK11637 AmiB activator; Provisional
Probab=61.43 E-value=1.1e+02 Score=26.75 Aligned_cols=45 Identities=9% Similarity=0.153 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNN 136 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~~ 136 (157)
..+.++..++.++.....+...++.+|..++..+......+...+
T Consensus 86 ~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 86 QASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555544444433
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.97 E-value=90 Score=26.30 Aligned_cols=15 Identities=40% Similarity=0.705 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy18194 44 REYQEEIRQLRALLE 58 (157)
Q Consensus 44 ~~l~~ei~~L~~~L~ 58 (157)
..+..++..|+....
T Consensus 187 ~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 187 AELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345556666655443
No 21
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.96 E-value=77 Score=26.41 Aligned_cols=43 Identities=7% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18194 91 LEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIG 133 (157)
Q Consensus 91 ~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~ 133 (157)
.+.+.++.+.+.++...+.+...+.+.|...+..|..+...++
T Consensus 69 ~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 69 DELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666655555555566666555555555544443
No 22
>KOG0963|consensus
Probab=59.05 E-value=93 Score=29.01 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHccC
Q psy18194 40 DTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
...|..++.|+..|+.++...+
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4568889999999999998765
No 23
>PLN03188 kinesin-12 family protein; Provisional
Probab=58.36 E-value=62 Score=32.69 Aligned_cols=48 Identities=8% Similarity=0.146 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccc
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNNSIN 139 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~~~~~ 139 (157)
+.++-..-.++......++..++.++|..|+..|+-.+..+.+.+.+.
T Consensus 1208 eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~aes 1255 (1320)
T PLN03188 1208 EAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAES 1255 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555666667777788899999999999999999999999877554
No 24
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=55.54 E-value=1.1e+02 Score=27.47 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcc
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNNSI 138 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~~~~ 138 (157)
+.++-....+.......++..++..+|..|+..|+..+..+.+-+.+
T Consensus 438 eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~lae 484 (488)
T PF06548_consen 438 EAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQYLAE 484 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555566666777788899999999999999999999999887754
No 25
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.83 E-value=98 Score=23.97 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 91 LEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRD 128 (157)
Q Consensus 91 ~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 128 (157)
+.+..++..++-++........+|+.+...|-..|-..
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 26
>KOG2391|consensus
Probab=54.29 E-value=1.2e+02 Score=26.42 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGN 134 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e 134 (157)
++..-..+|+...+...++...|.+.++-|+...++.+.+++.
T Consensus 243 eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 243 ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 3333444444445555566666777777777666665555544
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=53.86 E-value=1.2e+02 Score=24.80 Aligned_cols=35 Identities=26% Similarity=0.592 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQ 126 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 126 (157)
.+...+..++..+.........+..++..++..++
T Consensus 79 ~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld 113 (312)
T PF00038_consen 79 NLKEELEDLRRKYEEELAERKDLEEELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44555556666666666666666666666654444
No 28
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=52.70 E-value=1e+02 Score=23.56 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy18194 114 MEADLQALKEQYQRDMENIG 133 (157)
Q Consensus 114 l~~~l~~l~~~~~~~~~~l~ 133 (157)
+..++..+....+..+..|.
T Consensus 125 ~~~ki~e~~~ki~~ei~~lr 144 (177)
T PF07798_consen 125 QELKIQELNNKIDTEIANLR 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 29
>PRK11637 AmiB activator; Provisional
Probab=51.92 E-value=1.6e+02 Score=25.59 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIG 133 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~ 133 (157)
..+.++..++.++.....+...++.++...+..+...+...-
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555544444444433
No 30
>KOG2129|consensus
Probab=50.89 E-value=1.9e+02 Score=26.05 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCC
Q psy18194 41 TMLREYQEEIRQLRALLESSGSVPL 65 (157)
Q Consensus 41 ~~i~~l~~ei~~L~~~L~~~~~~~~ 65 (157)
.-|.+|..+-..|...|+.....|.
T Consensus 208 KrmdkLe~ekr~Lq~KlDqpvs~p~ 232 (552)
T KOG2129|consen 208 KRMDKLEQEKRYLQKKLDQPVSTPS 232 (552)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCC
Confidence 3355666777777777766544433
No 31
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.55 E-value=91 Score=29.11 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQ 124 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~ 124 (157)
..+.+|..|+..+.........|...+..++.-
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666655533
No 32
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=49.29 E-value=1.3e+02 Score=23.84 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 83 PLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADL 118 (157)
Q Consensus 83 ~~E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l 118 (157)
..+++.+...|..++..|+..+.........+..++
T Consensus 35 ~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eL 70 (206)
T PF14988_consen 35 QRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQEL 70 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666655544444444444443
No 33
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.39 E-value=87 Score=22.14 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKE 123 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~ 123 (157)
++++++..++.++...+.+...|..++..|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56677777888888888888889999888876
No 34
>KOG0577|consensus
Probab=47.72 E-value=1.5e+02 Score=28.21 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=19.5
Q ss_pred ccCCCCchHHHhhHHHHHHHhhhhhccce
Q psy18194 5 LSPADNNYDETLSTLRYANRAKNIANKPH 33 (157)
Q Consensus 5 isPs~~~~~ETlsTL~fA~rAk~I~n~~~ 33 (157)
+.|.......-.+|+..|.|+-.++|+-.
T Consensus 434 ~~P~~~aa~ap~~~~s~~~~~~~~rnrdh 462 (948)
T KOG0577|consen 434 IDPRPPAAPAPVSTTSSARRAAYCRNRDH 462 (948)
T ss_pred CCCCCCCCCCCCCccchHHHHHHHhhhhh
Confidence 44554455666778888888888877443
No 35
>KOG4807|consensus
Probab=47.08 E-value=2.1e+02 Score=25.59 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCc
Q psy18194 40 DTMLREYQEEIRQLRALLESSGSVPLSGG 68 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~~~~~~~~~ 68 (157)
..+-..|..||.+|+..|.+.++..+++.
T Consensus 473 QELnnRLaaEItrLRtlltgdGgGtGspl 501 (593)
T KOG4807|consen 473 QELNNRLAAEITRLRTLLTGDGGGTGSPL 501 (593)
T ss_pred HHHhhHHHHHHHHHHHHhccCCCCCCCcc
Confidence 34556788999999999988876554443
No 36
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=46.00 E-value=1.4e+02 Score=26.29 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy18194 109 NSKSKMEADLQALKEQYQRDMENIGNNN 136 (157)
Q Consensus 109 ~~~~~l~~~l~~l~~~~~~~~~~l~e~~ 136 (157)
-...+|++++.++..-+...+..|++.|
T Consensus 258 ~R~erLEeqlNd~~elHq~Ei~~LKqeL 285 (395)
T PF10267_consen 258 YRYERLEEQLNDLTELHQNEIYNLKQEL 285 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566666666666666666666554
No 37
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=44.94 E-value=1.3e+02 Score=22.46 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccc
Q psy18194 91 LEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNNSIN 139 (157)
Q Consensus 91 ~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~~~~~ 139 (157)
..+++++..++..++........|+..+..+...|..........+...
T Consensus 44 ~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 44 ELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 3566677777777777777777888888888888888877766665544
No 38
>PF14282 FlxA: FlxA-like protein
Probab=44.57 E-value=1.1e+02 Score=21.56 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 40 DTMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEKLREQYNAER 108 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~e~e~~i~~l~~~~~~~~ 108 (157)
+..|..|+..|..|..+|..-... ......++......++.+|..|+.++...+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~---------------~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD---------------SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc---------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999988755310 011344555556677777777776665433
No 39
>KOG4196|consensus
Probab=44.16 E-value=1.2e+02 Score=22.65 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRD 128 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 128 (157)
+++.+-..|..+++...++...+..+++.++..|+..
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666666666666666666554
No 40
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=43.08 E-value=84 Score=19.76 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQAL 121 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l 121 (157)
.++..+..|..+..........|..++..|
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333
No 41
>KOG0161|consensus
Probab=42.52 E-value=2.2e+02 Score=30.28 Aligned_cols=50 Identities=30% Similarity=0.389 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy18194 86 KEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNN 135 (157)
Q Consensus 86 ~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~ 135 (157)
.++...+++.++..+.+.++.++....++..+..+|...|+.-...|+++
T Consensus 1095 l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456688888888888888888888888888777777777666666655
No 42
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.33 E-value=1.7e+02 Score=23.97 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy18194 89 LRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNN 135 (157)
Q Consensus 89 ~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~ 135 (157)
.+..+..+..+|++++....+....|+.++..|+..+-.-.+++.-.
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888999888888777666665433
No 43
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=42.10 E-value=1.5e+02 Score=25.09 Aligned_cols=39 Identities=18% Similarity=0.455 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 90 RLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRD 128 (157)
Q Consensus 90 ~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 128 (157)
...++..+..++.++.....++..|+.++......++..
T Consensus 244 l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 244 LAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 345666677777777766666666766666555554443
No 44
>KOG1962|consensus
Probab=41.77 E-value=1.9e+02 Score=23.42 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhchh
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMEN---IGNNN 136 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~---l~e~~ 136 (157)
.++.++......++..+.....|.++.+.+...|+.-+++ |+++.
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4555666666677778888888999999999998887754 55544
No 45
>KOG4673|consensus
Probab=40.11 E-value=3.2e+02 Score=26.34 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcc
Q psy18194 40 DTMLREYQEEIRQLRALLESS 60 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~ 60 (157)
...|..|+.|..+|+.-|+..
T Consensus 494 ge~i~~L~sE~~~lk~il~~K 514 (961)
T KOG4673|consen 494 GELITKLQSEENKLKSILRDK 514 (961)
T ss_pred hhHHHHHHHHHHHHHHHhhhH
Confidence 345666666666666655543
No 46
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.03 E-value=3e+02 Score=25.36 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQAL 121 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l 121 (157)
.++.++.+++.++.........+..++..+
T Consensus 432 ~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 432 EAQNELFRSEAEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333333333
No 47
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.96 E-value=2.3e+02 Score=23.97 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKE 123 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~ 123 (157)
+.+.++..+...++.....+..+..+|.++..
T Consensus 229 e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 229 ELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555544
No 48
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.55 E-value=97 Score=19.77 Aligned_cols=30 Identities=10% Similarity=0.401 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQAL 121 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l 121 (157)
....++..++.++...+.+...|..++..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777778888888888777
No 49
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.98 E-value=2.3e+02 Score=23.13 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 84 LEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMEN 131 (157)
Q Consensus 84 ~E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 131 (157)
.+.+...+.++.+|.+|+.+++...-+...+.++-.++-..++..+..
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~ 104 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSG 104 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455567888888888888877777777777777776667765543
No 50
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.55 E-value=2e+02 Score=26.04 Aligned_cols=41 Identities=12% Similarity=0.273 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhchh
Q psy18194 92 EYEAEMEKLREQYNAERNSKS-------KMEADLQALKEQYQRDMENIGNNN 136 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~-------~l~~~l~~l~~~~~~~~~~l~e~~ 136 (157)
+.+....+++.+++..+.+.. .++.+|. .++..+..|+.++
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIk----eLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIE----KLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH----HHHHHHHHHHHHH
Confidence 344444555555554444333 3444443 4445555555554
No 51
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=36.13 E-value=1.3e+02 Score=19.93 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 94 EAEMEKLREQYNAERNSKSKMEADLQAL 121 (157)
Q Consensus 94 e~~i~~l~~~~~~~~~~~~~l~~~l~~l 121 (157)
+.++..+++.......+...|..+...+
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333344443333333344444443333
No 52
>KOG4348|consensus
Probab=36.07 E-value=2e+02 Score=26.18 Aligned_cols=57 Identities=28% Similarity=0.462 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHccCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 39 KDTMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADL 118 (157)
Q Consensus 39 ~~~~i~~l~~ei~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l 118 (157)
+...+.+|+.+|..|++-+.... .....++.+|..+++.++.-+..|+.++
T Consensus 567 ~k~s~delr~qi~el~~ive~lk-----------------------------~~~~kel~kl~~dleeek~mr~~lemei 617 (627)
T KOG4348|consen 567 KKNSLDELRAQIIELLCIVEALK-----------------------------KDHGKELEKLRKDLEEEKTMRSNLEMEI 617 (627)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHhhhHhhH
Confidence 45677888888888888765442 2233344445555554555555566666
Q ss_pred HHHHHH
Q psy18194 119 QALKEQ 124 (157)
Q Consensus 119 ~~l~~~ 124 (157)
..++..
T Consensus 618 ~~lkka 623 (627)
T KOG4348|consen 618 EKLKKA 623 (627)
T ss_pred HHHHHH
Confidence 666544
No 53
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=35.96 E-value=2.3e+02 Score=23.45 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHccCC
Q psy18194 41 TMLREYQEEIRQLRALLESSGS 62 (157)
Q Consensus 41 ~~i~~l~~ei~~L~~~L~~~~~ 62 (157)
..|..|+.+|+.-+.+|.....
T Consensus 194 ~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 194 NSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5567788888888888877754
No 54
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.68 E-value=1.6e+02 Score=20.95 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRD 128 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 128 (157)
.+++++..+-.++...+.....|.++...|+..++.-
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544444444433
No 55
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.75 E-value=3.9e+02 Score=25.11 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy18194 43 LREYQEEIRQLRALL 57 (157)
Q Consensus 43 i~~l~~ei~~L~~~L 57 (157)
+..|..|+..|+..+
T Consensus 431 ve~l~~e~~~L~~~~ 445 (652)
T COG2433 431 VERLEEENSELKREL 445 (652)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 56
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.46 E-value=1.4e+02 Score=19.99 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHccCC
Q psy18194 40 DTMLREYQEEIRQLRALLESSGS 62 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~~~ 62 (157)
...+..++..+...|..+....+
T Consensus 27 ~~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 27 DTATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 46667788888888888876543
No 57
>KOG0977|consensus
Probab=34.07 E-value=3e+02 Score=25.42 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHccC
Q psy18194 43 LREYQEEIRQLRALLESSG 61 (157)
Q Consensus 43 i~~l~~ei~~L~~~L~~~~ 61 (157)
++.|..+...|..++....
T Consensus 58 VR~LEaqN~~L~~di~~lr 76 (546)
T KOG0977|consen 58 VRFLEAQNRKLEHDINLLR 76 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667777777777665543
No 58
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.02 E-value=2.3e+02 Score=22.25 Aligned_cols=39 Identities=15% Similarity=0.329 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18194 94 EAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENI 132 (157)
Q Consensus 94 e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l 132 (157)
+.++..++-+.+...+...++..+...|...+...+..+
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443333
No 59
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=34.00 E-value=2.8e+02 Score=23.13 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 44 REYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKE 123 (157)
Q Consensus 44 ~~l~~ei~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~ 123 (157)
..|..++.+|+..+...... ......+..+++...+..|..+.........+....|.....
T Consensus 27 ~~Y~~ei~~L~~~i~~~~~~------------------~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~ 88 (298)
T PF11262_consen 27 ELYDEEIERLEKEISQMSRA------------------TISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKD 88 (298)
T ss_pred HHHHHHHHHHHHHHHHhccc------------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45888999999888771100 111122233456677777777776666666666666666655
Q ss_pred HHH
Q psy18194 124 QYQ 126 (157)
Q Consensus 124 ~~~ 126 (157)
.|=
T Consensus 89 ~wf 91 (298)
T PF11262_consen 89 SWF 91 (298)
T ss_pred hhh
Confidence 554
No 60
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=33.09 E-value=2e+02 Score=25.70 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=35.1
Q ss_pred HhhHHHHHHHhhhhhccceecCCchHHHHHHHHHHHHHHHHH
Q psy18194 15 TLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRAL 56 (157)
Q Consensus 15 TlsTL~fA~rAk~I~n~~~vn~~~~~~~i~~l~~ei~~L~~~ 56 (157)
|-..|+|-+|.|-++|+|+.+.-..+.-|.+|...|..|+..
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~fe~pi~ele~ki~el~~~ 95 (431)
T PLN03230 54 TTGALKILNRFKPLKNKPKPVTLPFEKPIVDLENRIDEVREL 95 (431)
T ss_pred cccHHHHHHhcCCCCCCCCCCccchhhHHHHHHHHHHHHHhh
Confidence 445799999999999999877766677788899999998875
No 61
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=32.93 E-value=3.4e+02 Score=24.20 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHcc
Q psy18194 41 TMLREYQEEIRQLRALLESS 60 (157)
Q Consensus 41 ~~i~~l~~ei~~L~~~L~~~ 60 (157)
..+...+.+|..+...+...
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~ 57 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQ 57 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777766544
No 62
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.93 E-value=2e+02 Score=21.10 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 85 EKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDM 129 (157)
Q Consensus 85 E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 129 (157)
.+.....++++++..++-.+.....+-.++.+++.+|+..+...+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666666666666666666667777777766665543
No 63
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=32.33 E-value=2.2e+02 Score=21.48 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHccC
Q psy18194 39 KDTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 39 ~~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
.....+.++.|+..|+.++....
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS 60 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAIS 60 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-
T ss_pred ccHHHHHHHHHHHHHHHHHHcCC
Confidence 34567789999999999987653
No 64
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.00 E-value=2.8e+02 Score=22.50 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy18194 40 DTMLREYQEEIRQLRAL 56 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~ 56 (157)
...|.+|..|+..|..+
T Consensus 31 e~~L~e~~kE~~~L~~E 47 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQE 47 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667777777766554
No 65
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=30.13 E-value=3.8e+02 Score=25.39 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy18194 39 KDTMLREYQEEIRQLRA 55 (157)
Q Consensus 39 ~~~~i~~l~~ei~~L~~ 55 (157)
....|+.|+.++...|.
T Consensus 423 LE~dvkkLraeLq~~Rq 439 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQ 439 (697)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 35667777777765544
No 66
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=29.80 E-value=2.3e+02 Score=20.86 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18194 90 RLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGN 134 (157)
Q Consensus 90 ~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e 134 (157)
+.+++.+|..|+.+......-+..|..+|..|.-.+...-.+...
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457899999999999988888888999998888887777666443
No 67
>KOG4196|consensus
Probab=29.78 E-value=2.4e+02 Score=21.11 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQAL 121 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l 121 (157)
++.+++.+|..++.....+.+.+......+
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 68
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=29.67 E-value=3.1e+02 Score=22.37 Aligned_cols=7 Identities=29% Similarity=0.586 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy18194 113 KMEADLQ 119 (157)
Q Consensus 113 ~l~~~l~ 119 (157)
.|...+.
T Consensus 241 ~Le~~l~ 247 (312)
T PF00038_consen 241 SLERQLR 247 (312)
T ss_dssp HHHHHHH
T ss_pred hhhhhHH
Confidence 3333333
No 69
>COG2262 HflX GTPases [General function prediction only]
Probab=29.48 E-value=2.5e+02 Score=24.90 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 85 EKEKLRLEYEAEMEKLREQYNAERNSKSK 113 (157)
Q Consensus 85 E~~~~~~e~e~~i~~l~~~~~~~~~~~~~ 113 (157)
+.+.-+.-+..+|.+++.+++.....+..
T Consensus 154 ~lE~drR~ir~rI~~i~~eLe~v~~~R~~ 182 (411)
T COG2262 154 QLETDRRRIRRRIAKLKRELENVEKAREP 182 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445777788887777655554443
No 70
>KOG0995|consensus
Probab=28.90 E-value=4.8e+02 Score=24.28 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHccC
Q psy18194 40 DTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
...+..++.++..|+.++.-++
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~ 328 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQG 328 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555666666666665553
No 71
>smart00338 BRLZ basic region leucin zipper.
Probab=28.66 E-value=1.5e+02 Score=18.52 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQAL 121 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l 121 (157)
.++.++..|..+..........|..++..|
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333344433333
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=28.61 E-value=4.9e+02 Score=24.31 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHccC
Q psy18194 40 DTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
...|..|...|..|+.++....
T Consensus 49 ~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 49 ISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHhhcccC
Confidence 3457778888888887776554
No 73
>KOG4302|consensus
Probab=28.23 E-value=4.4e+02 Score=24.94 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 41 TMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQA 120 (157)
Q Consensus 41 ~~i~~l~~ei~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~ 120 (157)
..+.++..+|.+|-..|.+....+......+ .+.- .+..++|..++..|+.++....+....+...|..
T Consensus 124 ~ef~el~~qie~l~~~l~g~~~~~~~~~~D~--------~dls---l~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~ 192 (660)
T KOG4302|consen 124 AEFKELYHQIEKLCEELGGPEDLPSFLIADE--------SDLS---LEKLEELREHLNELQKEKSDRLEKVLELKEEIKS 192 (660)
T ss_pred HHHHHHHHHHHHHHHHhcCCccCCcccccCc--------cccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766522222111110 0111 1334688888999998888777777778888877
Q ss_pred HHHHHHHHHH
Q psy18194 121 LKEQYQRDME 130 (157)
Q Consensus 121 l~~~~~~~~~ 130 (157)
+-..++-...
T Consensus 193 l~~~Lg~~~~ 202 (660)
T KOG4302|consen 193 LCSVLGLDFS 202 (660)
T ss_pred HHHHhCCCcc
Confidence 7776665544
No 74
>KOG4005|consensus
Probab=28.14 E-value=3.5e+02 Score=22.49 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 91 LEYEAEMEKLREQYNAERNSKSKMEADLQALKEQ 124 (157)
Q Consensus 91 ~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~ 124 (157)
++++.+|..|.++.+..+.+.+.|.+....|-..
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~ 126 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESLLAK 126 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666677777777776666666666655544333
No 75
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=27.87 E-value=2.5e+02 Score=20.73 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=19.4
Q ss_pred hccceecCCchHHHHHHHHHHHHHHHHHHHc
Q psy18194 29 ANKPHINEDPKDTMLREYQEEIRQLRALLES 59 (157)
Q Consensus 29 ~n~~~vn~~~~~~~i~~l~~ei~~L~~~L~~ 59 (157)
.-++++.+..+..+...|+..+..+..+|..
T Consensus 8 ~VK~ivTe~~K~~l~~~l~~~i~~~d~el~Q 38 (131)
T PF11068_consen 8 TVKAIVTEKWKEELLQELQEQIQQLDQELQQ 38 (131)
T ss_dssp EEEEE--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556677777888888777776653
No 76
>KOG0972|consensus
Probab=27.31 E-value=3.3e+02 Score=23.42 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=6.4
Q ss_pred HHHHHhhhhhcc
Q psy18194 20 RYANRAKNIANK 31 (157)
Q Consensus 20 ~fA~rAk~I~n~ 31 (157)
+.++|-|.+.|.
T Consensus 263 kI~SREK~lNnq 274 (384)
T KOG0972|consen 263 KIASREKSLNNQ 274 (384)
T ss_pred HHHHHHHHHHHH
Confidence 345666665543
No 77
>KOG0804|consensus
Probab=26.74 E-value=3.7e+02 Score=24.36 Aligned_cols=24 Identities=4% Similarity=0.077 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhc
Q psy18194 114 MEADLQALKEQYQRDMENIGNNNS 137 (157)
Q Consensus 114 l~~~l~~l~~~~~~~~~~l~e~~~ 137 (157)
++++.......++.++..|+++++
T Consensus 422 ~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 422 LEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666777777764
No 78
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=26.72 E-value=3.1e+02 Score=21.35 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRD 128 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 128 (157)
.+.+.-.-|.++++........|...+..+...|..-
T Consensus 78 ~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 78 ELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344577777777788888888888887777773
No 79
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=26.45 E-value=2.7e+02 Score=20.62 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhchhc
Q psy18194 86 KEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQR---DMENIGNNNS 137 (157)
Q Consensus 86 ~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~---~~~~l~e~~~ 137 (157)
...+..-|+.-+....+-+...+.+..-|.+.+..++..|++ .+..|+++++
T Consensus 69 i~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 69 IGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666777777777777788888888889999999999944 4566666664
No 80
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.27 E-value=4.1e+02 Score=22.64 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18194 93 YEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIG 133 (157)
Q Consensus 93 ~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~ 133 (157)
+-.+-..+...+...+..+..|..++..++..|.+-..-|.
T Consensus 253 ~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 253 LAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666677777788888888888876544433
No 81
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.50 E-value=3.4e+02 Score=24.60 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHH
Q psy18194 89 LRLEYEAEMEKLREQYN---A----ERNSKSKMEADLQALKEQY 125 (157)
Q Consensus 89 ~~~e~e~~i~~l~~~~~---~----~~~~~~~l~~~l~~l~~~~ 125 (157)
...++++++..++.+++ . .+.....++.++..|+...
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665444 2 3333334555555555444
No 82
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=25.35 E-value=2.1e+02 Score=19.30 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy18194 112 SKMEADLQAL 121 (157)
Q Consensus 112 ~~l~~~l~~l 121 (157)
.+|..+|..+
T Consensus 10 ~~Lk~eiqkl 19 (76)
T PF07334_consen 10 ARLKEEIQKL 19 (76)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 83
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=24.70 E-value=3.7e+02 Score=21.59 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 43 LREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEKLREQYNAERN 109 (157)
Q Consensus 43 i~~l~~ei~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~e~e~~i~~l~~~~~~~~~ 109 (157)
=-+|..|+..|+.+=...++...+... ...........+.+++|..|+.++....+
T Consensus 30 R~~lE~EL~~lr~qq~~~~~~~~~~~~-----------~~~~~L~~~LrEkEErILaLEad~~kWEq 85 (205)
T PF12240_consen 30 RTRLERELESLRAQQRQGNSSGSSSPS-----------NNASNLKELLREKEERILALEADMTKWEQ 85 (205)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCC-----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888765444322222111 12233333344666666666666554433
No 84
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=24.62 E-value=4e+02 Score=22.19 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 40 DTMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQ 119 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~ 119 (157)
.-.++.|--.+.-|+++|..++.....- .....|-..+..+++.++..++..-........=|++.+.
T Consensus 15 rL~v~~LhHQvlTLqcQLRDQ~~ahreL------------Qas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~A 82 (277)
T PF15030_consen 15 RLRVQQLHHQVLTLQCQLRDQGSAHREL------------QASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLA 82 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHH
Confidence 4557788888999999998775221100 0012233344556666666665544333333333555555
Q ss_pred HHHHHH
Q psy18194 120 ALKEQY 125 (157)
Q Consensus 120 ~l~~~~ 125 (157)
.+-...
T Consensus 83 slV~kc 88 (277)
T PF15030_consen 83 SLVQKC 88 (277)
T ss_pred HHHHHH
Confidence 554433
No 85
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.19 E-value=2.9e+02 Score=20.12 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=19.0
Q ss_pred ecCCchHHHHHHHHHHHHHHHHHHHcc
Q psy18194 34 INEDPKDTMLREYQEEIRQLRALLESS 60 (157)
Q Consensus 34 vn~~~~~~~i~~l~~ei~~L~~~L~~~ 60 (157)
++..+...++..|...|.++..++...
T Consensus 9 ~~~~~~~~~ve~L~s~lr~~E~E~~~l 35 (120)
T PF12325_consen 9 SSGGPSVQLVERLQSQLRRLEGELASL 35 (120)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888888777654
No 86
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.01 E-value=4e+02 Score=25.49 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18194 103 QYNAERNSKSKMEADLQA 120 (157)
Q Consensus 103 ~~~~~~~~~~~l~~~l~~ 120 (157)
-+..+++++..|..+|..
T Consensus 164 sl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 164 SLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555544
No 87
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.73 E-value=6.9e+02 Score=24.34 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy18194 43 LREYQEEIRQLRALLE 58 (157)
Q Consensus 43 i~~l~~ei~~L~~~L~ 58 (157)
+.-|+.|+..||.+|.
T Consensus 389 ~QplrsENaqLrRrLr 404 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLR 404 (861)
T ss_pred hhhhhhhhHHHHHHHH
Confidence 4445566666655543
No 88
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.68 E-value=3.5e+02 Score=20.91 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDME 130 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 130 (157)
.++.++..++..++....+...|.+++..++..|..-+.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666665443
No 89
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=23.28 E-value=4.5e+02 Score=22.07 Aligned_cols=88 Identities=10% Similarity=0.174 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q psy18194 41 TMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEKLRE----QYNAERNSKSKMEA 116 (157)
Q Consensus 41 ~~i~~l~~ei~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~e~e~~i~~l~~----~~~~~~~~~~~l~~ 116 (157)
..+..++.++..++.+|.......++.... -.....+...+...+.++..++.. .+.....+...|+.
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~--------v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~r 285 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLRSITPEQNPQ--------VPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVL 285 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCc--------hHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Confidence 457788888888888887654322221110 011233333333333333333322 12223334455666
Q ss_pred HHHHHHHHHHHHHHHhhchh
Q psy18194 117 DLQALKEQYQRDMENIGNNN 136 (157)
Q Consensus 117 ~l~~l~~~~~~~~~~l~e~~ 136 (157)
+..-.+..|+.-+..+++--
T Consensus 286 e~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 286 QNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777666543
No 90
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.96 E-value=2.2e+02 Score=22.01 Aligned_cols=18 Identities=22% Similarity=0.542 Sum_probs=1.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18194 108 RNSKSKMEADLQALKEQY 125 (157)
Q Consensus 108 ~~~~~~l~~~l~~l~~~~ 125 (157)
+.+.++|..++.+|+..+
T Consensus 30 ~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 30 REEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555555544
No 91
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.59 E-value=3.7e+02 Score=20.79 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 82 TPLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQ 124 (157)
Q Consensus 82 ~~~E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~ 124 (157)
.++|++.+ ..++.+++++....++-...-+....+|++.
T Consensus 27 sEeE~eeL----r~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 27 SEEEREEL----RSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34454443 3344444544444444444444444444444
No 92
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=22.56 E-value=1.4e+02 Score=19.46 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHccC
Q psy18194 40 DTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
..-|--|+.||.+|+.++..++
T Consensus 31 ~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 31 EERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3456778999999999987664
No 93
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=22.04 E-value=2.7e+02 Score=19.73 Aligned_cols=8 Identities=13% Similarity=-0.068 Sum_probs=3.4
Q ss_pred CHHHHHHH
Q psy18194 82 TPLEKEKL 89 (157)
Q Consensus 82 ~~~E~~~~ 89 (157)
.+.+++.-
T Consensus 53 ~f~krE~A 60 (100)
T PF04568_consen 53 AFGKREAA 60 (100)
T ss_dssp HHHHHHHH
T ss_pred ccchHHHh
Confidence 34444443
No 94
>KOG4466|consensus
Probab=22.03 E-value=4.9e+02 Score=22.01 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHccCCC
Q psy18194 44 REYQEEIRQLRALLESSGSV 63 (157)
Q Consensus 44 ~~l~~ei~~L~~~L~~~~~~ 63 (157)
..|+..+..|+.+|.+-+.+
T Consensus 38 q~yk~kLa~Lq~~Leel~~g 57 (291)
T KOG4466|consen 38 QMYKDKLAQLQAQLEELGQG 57 (291)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45788889999988876543
No 95
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=21.73 E-value=3.2e+02 Score=19.75 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=35.3
Q ss_pred HHHhhHHHHHHHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHcc
Q psy18194 13 DETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLESS 60 (157)
Q Consensus 13 ~ETlsTL~fA~rAk~I~n~~~vn~~~~~~~i~~l~~ei~~L~~~L~~~ 60 (157)
+..++.-.||+.+-...|.+.-....-...+.++..-|..+..++...
T Consensus 5 ~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~ 52 (132)
T PF10392_consen 5 SPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQ 52 (132)
T ss_pred CCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677889988888777665555555677888888888888877654
No 96
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=21.47 E-value=4.9e+02 Score=23.89 Aligned_cols=30 Identities=10% Similarity=0.408 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18194 105 NAERNSKSKMEADLQALKEQYQRDMENIGN 134 (157)
Q Consensus 105 ~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e 134 (157)
.........|++++.-.+..|+.++..+-|
T Consensus 465 ~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE 494 (518)
T PF10212_consen 465 KEANQNISRLQDELETTRRNYEEQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333344444555555555556655554433
No 97
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.01 E-value=6.3e+02 Score=22.91 Aligned_cols=9 Identities=11% Similarity=0.372 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy18194 114 MEADLQALK 122 (157)
Q Consensus 114 l~~~l~~l~ 122 (157)
+...+..|.
T Consensus 128 ~~~~l~~l~ 136 (472)
T TIGR03752 128 LQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHH
Confidence 333333333
No 98
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.92 E-value=4.1e+02 Score=20.65 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQY 125 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~ 125 (157)
+++.++..++.+..........+...+..+....
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555444444444444444444333333
No 99
>KOG3990|consensus
Probab=20.91 E-value=5.1e+02 Score=21.76 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHccCC
Q psy18194 40 DTMLREYQEEIRQLRALLESSGS 62 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~~~ 62 (157)
...|..|.+||++|+..|.....
T Consensus 224 ~V~i~~lkeeia~Lkk~L~qkdq 246 (305)
T KOG3990|consen 224 MVKIQKLKEEIARLKKLLHQKDQ 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Confidence 45688899999999999988764
No 100
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.65 E-value=3.1e+02 Score=19.15 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 86 KEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRD 128 (157)
Q Consensus 86 ~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 128 (157)
+......++.++..+.............+..++.+++..+..-
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666655566666666666666655543
No 101
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.64 E-value=5.8e+02 Score=23.41 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHcc
Q psy18194 44 REYQEEIRQLRALLESS 60 (157)
Q Consensus 44 ~~l~~ei~~L~~~L~~~ 60 (157)
..+..|+..|...|...
T Consensus 437 ~~f~~Ec~aL~~rL~~a 453 (518)
T PF10212_consen 437 VHFYAECRALQKRLESA 453 (518)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777776666543
No 102
>KOG0241|consensus
Probab=20.63 E-value=3.2e+02 Score=27.57 Aligned_cols=34 Identities=6% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhccccC
Q psy18194 108 RNSKSKMEADLQALKEQYQRDMENIGNNNSINTG 141 (157)
Q Consensus 108 ~~~~~~l~~~l~~l~~~~~~~~~~l~e~~~~~~~ 141 (157)
++..+++..=|.++...|++++.++++...++..
T Consensus 392 ~e~l~esekli~ei~~twEEkl~ktE~in~erq~ 425 (1714)
T KOG0241|consen 392 KEKLEESEKLIKEITVTWEEKLRKTEEINQERQA 425 (1714)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444445555677899999999999988877643
No 103
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.20 E-value=3.9e+02 Score=22.08 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcc
Q psy18194 100 LREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNNSI 138 (157)
Q Consensus 100 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~~~~ 138 (157)
+.++.+..+.+...+..++..+...+..+-.+|.+.|..
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444444444444333333333334444444444433
No 104
>KOG0994|consensus
Probab=20.07 E-value=9.9e+02 Score=24.82 Aligned_cols=44 Identities=25% Similarity=0.429 Sum_probs=30.3
Q ss_pred HhhHHHHHHHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHcc
Q psy18194 15 TLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLESS 60 (157)
Q Consensus 15 TlsTL~fA~rAk~I~n~~~vn~~~~~~~i~~l~~ei~~L~~~L~~~ 60 (157)
+..|=+|-.||+.|+...+.. ...+.+..+++.+...+..|...
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~g--ay~s~f~~me~kl~~ir~il~~~ 1220 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLG--AYASRFLDMEEKLEEIRAILSAP 1220 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCch--hhHhHHHHHHHHHHHHHHHhcCC
Confidence 455667778999998766544 44566667777777777776544
Done!