Query psy18194
Match_columns 157
No_of_seqs 183 out of 1297
Neff 6.7
Searched_HMMs 29240
Date Sat Aug 17 01:14:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kin_B Kinesin; motor protein, 99.4 3.2E-14 1.1E-18 100.4 3.4 50 1-50 49-99 (100)
2 3kin_B Kinesin heavy chain; mo 99.4 1.5E-13 5.2E-18 99.5 5.5 53 1-53 45-98 (117)
3 2y65_A Kinesin, kinesin heavy 99.2 1.3E-12 4.5E-17 110.6 1.7 55 1-55 306-361 (365)
4 3cob_A Kinesin heavy chain-lik 99.2 1.9E-12 6.4E-17 109.8 1.8 54 1-56 300-353 (369)
5 3bfn_A Kinesin-like protein KI 99.1 9.6E-12 3.3E-16 106.1 0.1 56 1-60 320-375 (388)
6 1goj_A Kinesin, kinesin heavy 99.0 8.4E-11 2.9E-15 99.2 2.9 42 1-42 303-344 (355)
7 2owm_A Nckin3-434, related to 99.0 1.4E-10 4.7E-15 100.5 3.0 43 1-45 388-431 (443)
8 1ry6_A Internal kinesin; kines 98.8 6.4E-10 2.2E-14 94.0 2.1 36 1-36 304-339 (360)
9 3u06_A Protein claret segregat 98.4 5.7E-08 1.9E-12 83.4 2.4 36 1-36 355-391 (412)
10 3i00_A HIP-I, huntingtin-inter 93.3 1.4 4.7E-05 31.3 10.4 70 35-126 9-78 (120)
11 1x79_B RAB GTPase binding effe 79.5 7.3 0.00025 27.3 6.7 82 41-137 6-87 (112)
12 3a7p_A Autophagy protein 16; c 78.9 17 0.00058 26.7 9.6 80 41-139 68-147 (152)
13 3swf_A CGMP-gated cation chann 78.4 11 0.00037 24.5 6.8 47 92-138 4-50 (74)
14 3cve_A Homer protein homolog 1 73.6 15 0.00053 23.6 8.3 45 91-135 17-61 (72)
15 3swy_A Cyclic nucleotide-gated 73.3 12 0.0004 22.1 6.9 43 93-135 3-45 (46)
16 3cvf_A Homer-3, homer protein 71.8 18 0.00062 23.7 8.3 45 91-135 23-67 (79)
17 3bas_A Myosin heavy chain, str 70.1 20 0.0007 23.6 10.2 31 29-59 2-32 (89)
18 2dfs_A Myosin-5A; myosin-V, in 66.4 37 0.0013 32.1 10.1 37 92-128 988-1024(1080)
19 3oja_B Anopheles plasmodium-re 64.0 41 0.0014 28.7 9.3 17 41-57 477-493 (597)
20 3vp9_A General transcriptional 62.4 33 0.0011 23.1 7.2 49 91-139 39-87 (92)
21 3s4r_A Vimentin; alpha-helix, 59.7 36 0.0012 22.7 10.1 41 88-128 49-89 (93)
22 3tnu_B Keratin, type II cytosk 55.2 50 0.0017 23.0 7.1 21 40-60 35-55 (129)
23 3iox_A AGI/II, PA; alpha helix 52.0 1.1E+02 0.0036 26.7 9.6 18 41-58 9-26 (497)
24 2fxo_A Myosin heavy chain, car 51.4 59 0.002 22.6 7.5 19 40-58 12-30 (129)
25 3tnu_A Keratin, type I cytoske 46.9 47 0.0016 23.2 5.7 17 42-58 39-55 (131)
26 3o0z_A RHO-associated protein 46.6 87 0.003 23.3 8.8 18 92-109 94-111 (168)
27 1gd2_E Transcription factor PA 46.5 53 0.0018 20.8 6.2 32 92-123 33-64 (70)
28 3k29_A Putative uncharacterize 46.3 64 0.0022 24.0 6.5 56 90-145 18-73 (169)
29 2dfs_A Myosin-5A; myosin-V, in 45.8 1.5E+02 0.0051 28.0 10.4 12 46-57 926-937 (1080)
30 3oja_A Leucine-rich immune mol 43.2 1.1E+02 0.0039 25.3 8.5 37 97-133 437-473 (487)
31 3tnu_A Keratin, type I cytoske 43.1 81 0.0028 21.9 7.0 11 114-124 89-99 (131)
32 3ol1_A Vimentin; structural ge 41.3 85 0.0029 21.6 11.1 46 91-136 65-117 (119)
33 1zxa_A CGMP-dependent protein 40.1 57 0.002 20.6 4.7 45 82-126 12-56 (67)
34 2wt7_B Transcription factor MA 40.0 81 0.0028 21.0 7.1 37 91-127 51-87 (90)
35 3tnu_B Keratin, type II cytosk 39.4 93 0.0032 21.5 7.4 12 46-57 34-45 (129)
36 2dgc_A Protein (GCN4); basic d 38.4 68 0.0023 19.7 5.8 33 93-125 28-60 (63)
37 1x79_B RAB GTPase binding effe 37.2 1E+02 0.0035 21.3 7.2 26 114-139 57-82 (112)
38 3vkg_A Dynein heavy chain, cyt 36.6 3.1E+02 0.01 29.5 11.6 33 91-123 2038-2070(3245)
39 4dzn_A Coiled-coil peptide CC- 34.1 55 0.0019 17.3 5.2 27 98-124 5-31 (33)
40 3na7_A HP0958; flagellar bioge 33.8 1.6E+02 0.0055 22.6 9.6 38 97-134 120-157 (256)
41 3vem_A Helicase protein MOM1; 33.6 1.2E+02 0.0041 21.1 6.9 10 47-56 38-47 (115)
42 1hjb_A Ccaat/enhancer binding 33.4 1E+02 0.0035 20.3 7.1 18 108-125 49-66 (87)
43 3c3f_A Alpha/beta peptide with 32.5 64 0.0022 17.6 3.8 26 97-122 3-28 (34)
44 2wt7_A Proto-oncogene protein 31.0 91 0.0031 18.9 7.2 25 98-122 26-50 (63)
45 1dh3_A Transcription factor CR 30.6 74 0.0025 18.9 3.9 26 98-123 25-50 (55)
46 1deq_A Fibrinogen (alpha chain 30.4 1.1E+02 0.0039 25.6 6.2 16 45-60 64-79 (390)
47 3sjb_C Golgi to ER traffic pro 30.1 1.3E+02 0.0043 20.2 7.3 24 38-61 20-43 (93)
48 1t2k_D Cyclic-AMP-dependent tr 29.9 93 0.0032 18.6 6.9 27 98-124 25-51 (61)
49 3m48_A General control protein 29.7 72 0.0025 17.3 3.7 15 108-122 13-27 (33)
50 4egx_A Kinesin-like protein KI 29.7 69 0.0024 23.7 4.5 15 119-133 22-36 (184)
51 1kd8_B GABH BLL, GCN4 acid bas 29.1 78 0.0027 17.5 4.8 26 98-123 4-29 (36)
52 4etp_A Kinesin-like protein KA 28.3 2.5E+02 0.0087 23.2 8.5 15 121-135 46-60 (403)
53 1kd8_A GABH AIV, GCN4 acid bas 27.4 84 0.0029 17.4 4.0 9 113-121 19-27 (36)
54 1l8d_A DNA double-strand break 26.3 1.4E+02 0.0048 19.6 10.1 40 87-126 63-102 (112)
55 3ghg_A Fibrinogen alpha chain; 26.1 80 0.0027 27.8 4.7 92 19-133 60-151 (562)
56 2oxj_A Hybrid alpha/beta pepti 26.1 87 0.003 17.1 4.4 25 98-122 4-28 (34)
57 3oja_B Anopheles plasmodium-re 25.2 3.1E+02 0.01 23.1 10.3 11 45-55 460-470 (597)
58 2bni_A General control protein 25.0 92 0.0032 17.0 3.5 23 99-121 5-27 (34)
59 1gu4_A CAAT/enhancer binding p 24.9 1.4E+02 0.0049 19.1 6.6 15 108-122 49-63 (78)
60 3ra3_B P2F; coiled coil domain 24.7 79 0.0027 16.1 2.8 16 105-120 10-25 (28)
61 1i84_S Smooth muscle myosin he 23.4 2.2E+02 0.0076 26.9 7.6 18 41-58 857-874 (1184)
62 2ve7_A Kinetochore protein HEC 22.9 2E+02 0.0068 23.0 6.4 29 96-124 186-214 (315)
63 3c3g_A Alpha/beta peptide with 22.6 1E+02 0.0035 16.7 3.8 14 109-122 14-27 (33)
64 1nkp_B MAX protein, MYC proto- 20.8 1.7E+02 0.0057 18.4 4.6 11 93-103 52-62 (83)
65 3jsv_C NF-kappa-B essential mo 20.4 2E+02 0.0069 19.2 8.0 34 92-125 44-77 (94)
No 1
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.45 E-value=3.2e-14 Score=100.38 Aligned_cols=50 Identities=36% Similarity=0.498 Sum_probs=45.6
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCch-HHHHHHHHHHH
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPK-DTMLREYQEEI 50 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~-~~~i~~l~~ei 50 (157)
|||||||+..+++||++||+||+|||.|+|.|.+|.++. ..++++|+.||
T Consensus 49 mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 49 IVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHTCEEEECCEEECCHHHHHHHHHHHH
T ss_pred EEEEeCcccchHHHHHHHHHHHHHHHhccCcceeccCCCHHHHHHHHHHhh
Confidence 799999999999999999999999999999999999854 56777788776
No 2
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.42 E-value=1.5e-13 Score=99.45 Aligned_cols=53 Identities=34% Similarity=0.444 Sum_probs=44.0
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCchH-HHHHHHHHHHHHH
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKD-TMLREYQEEIRQL 53 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~~-~~i~~l~~ei~~L 53 (157)
|||||||+..+++||++||+||+|||.|+|.|.+|.++.. .+++.|+.++..+
T Consensus 45 ~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 45 IVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp EEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHH
T ss_pred eeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999998653 4444454444443
No 3
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=99.24 E-value=1.3e-12 Score=110.60 Aligned_cols=55 Identities=36% Similarity=0.501 Sum_probs=41.6
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCch-HHHHHHHHHHHHHHHH
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPK-DTMLREYQEEIRQLRA 55 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~-~~~i~~l~~ei~~L~~ 55 (157)
|||||||+..+++||++||+||+|||+|+|.|.+|+++. ..+++.|+.++..++.
T Consensus 306 mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~~ 361 (365)
T 2y65_A 306 IVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNAR 361 (365)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC----------
T ss_pred EEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999864 5677778888887765
No 4
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=99.22 E-value=1.9e-12 Score=109.85 Aligned_cols=54 Identities=30% Similarity=0.479 Sum_probs=43.0
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCchHHHHHHHHHHHHHHHHH
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRAL 56 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~~~~i~~l~~ei~~L~~~ 56 (157)
|||||||+..+++||++||+||+|||+|+|.|.+|.++ ..|..|+.++..|+.+
T Consensus 300 mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--~ei~~L~~~l~~~~~~ 353 (369)
T 3cob_A 300 MFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLKKLVSYWKEQ 353 (369)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--HHHHHHHHHTTCC---
T ss_pred EEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH--HHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999987 3444444444444443
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=99.09 E-value=9.6e-12 Score=106.11 Aligned_cols=56 Identities=27% Similarity=0.453 Sum_probs=28.7
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHcc
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLESS 60 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~~~~i~~l~~ei~~L~~~L~~~ 60 (157)
|||||||+..+++||++||+||+|||+|+|+|.+|+++....+. ++.+++.+|...
T Consensus 320 mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l~----~~k~~~~~l~~~ 375 (388)
T 3bfn_A 320 LIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALG----PVKLSQKELLGP 375 (388)
T ss_dssp EEEEECCSGGGHHHHHHHHHHHCSEEEEC-------------------------------
T ss_pred EEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHHH----HHHHHHHHhhCC
Confidence 89999999999999999999999999999999999987765544 344455555433
No 6
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=99.02 E-value=8.4e-11 Score=99.19 Aligned_cols=42 Identities=40% Similarity=0.536 Sum_probs=39.0
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecCCchHHH
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTM 42 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~~~~~~~ 42 (157)
|||||||+..+++||++||+||+|||+|+|+|.+|.++....
T Consensus 303 mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~ 344 (355)
T 1goj_A 303 LIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAE 344 (355)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCSS
T ss_pred EEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCCCHHH
Confidence 799999999999999999999999999999999999876543
No 7
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=98.99 E-value=1.4e-10 Score=100.47 Aligned_cols=43 Identities=51% Similarity=0.871 Sum_probs=32.8
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecC-CchHHHHHH
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE-DPKDTMLRE 45 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~-~~~~~~i~~ 45 (157)
|||||||+ +++||++||+||+|||+|+|+|++|+ ++..+..++
T Consensus 388 mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~~~~~~~~ 431 (443)
T 2owm_A 388 MIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGVSAAERD 431 (443)
T ss_dssp EEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC---------
T ss_pred EEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCCccHHHHH
Confidence 89999998 49999999999999999999999999 555444443
No 8
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=98.85 E-value=6.4e-10 Score=93.95 Aligned_cols=36 Identities=39% Similarity=0.550 Sum_probs=26.7
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccceecC
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~~vn~ 36 (157)
|||||||+..+++||++||+||+|||+|+|.|..|.
T Consensus 304 mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 304 MIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHCC---------
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 899999999999999999999999999999665554
No 9
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=98.44 E-value=5.7e-08 Score=83.36 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=29.1
Q ss_pred CEEeccCCCCchHHHhhHHHHHHHhhhhhccc-eecC
Q psy18194 1 MVACLSPADNNYDETLSTLRYANRAKNIANKP-HINE 36 (157)
Q Consensus 1 mIa~isPs~~~~~ETlsTL~fA~rAk~I~n~~-~vn~ 36 (157)
|||||||+..+++||++||+||+||++|+..+ +.|.
T Consensus 355 mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~ 391 (412)
T 3u06_A 355 MFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391 (412)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhhcccccccccc
Confidence 89999999999999999999999999998544 4443
No 10
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=93.31 E-value=1.4 Score=31.33 Aligned_cols=70 Identities=21% Similarity=0.393 Sum_probs=53.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHccCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 35 NEDPKDTMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEKLREQYNAERNSKSKM 114 (157)
Q Consensus 35 n~~~~~~~i~~l~~ei~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l 114 (157)
..++.+.+|..|+.+|..|+..|... -.|.+.....|..+|..|+.++...+......
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~l----------------------~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a 66 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLENM----------------------KTESQRVVLQLKGHVSELEADLAEQQHLRQQA 66 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677899999999999999998754 34666677789999999999998877666666
Q ss_pred HHHHHHHHHHHH
Q psy18194 115 EADLQALKEQYQ 126 (157)
Q Consensus 115 ~~~l~~l~~~~~ 126 (157)
..+...|+..++
T Consensus 67 ~~e~e~Lr~e~~ 78 (120)
T 3i00_A 67 ADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 11
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=79.54 E-value=7.3 Score=27.30 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 41 TMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQA 120 (157)
Q Consensus 41 ~~i~~l~~ei~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~ 120 (157)
+.+..|+.+...|+.+|..... ...+.+..-....++...+|..|.............|...+..
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~---------------~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq 70 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMK---------------DKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQ 70 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777754420 0011222233445677778888888887777777778888888
Q ss_pred HHHHHHHHHHHhhchhc
Q psy18194 121 LKEQYQRDMENIGNNNS 137 (157)
Q Consensus 121 l~~~~~~~~~~l~e~~~ 137 (157)
.+......+..|.....
T Consensus 71 ~q~~vq~qL~~Lt~~Re 87 (112)
T 1x79_B 71 AKRDVQEQMAVLMQSRE 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887777777766543
No 12
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=78.93 E-value=17 Score=26.75 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 41 TMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQA 120 (157)
Q Consensus 41 ~~i~~l~~ei~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~ 120 (157)
..|..|+.++..|+..+.... ....++.+..+.+..++..++-++........+++++...
T Consensus 68 ~~I~~L~~El~~l~~ki~dLe-------------------eel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLK-------------------EVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777766665432 1223455555667777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhchhccc
Q psy18194 121 LKEQYQRDMENIGNNNSIN 139 (157)
Q Consensus 121 l~~~~~~~~~~l~e~~~~~ 139 (157)
|-..|-.++..--+.++++
T Consensus 129 LV~RWM~rk~qEAe~MN~a 147 (152)
T 3a7p_A 129 LVARWLKKTEKETEAMNSE 147 (152)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777766655554443
No 13
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=78.39 E-value=11 Score=24.51 Aligned_cols=47 Identities=4% Similarity=0.193 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcc
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNNSI 138 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~~~~ 138 (157)
.+++++.+|+..++..+-..++|..+....+..+...+..|+..++.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677777777777777777778888888888888888888777765
No 14
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=73.57 E-value=15 Score=23.60 Aligned_cols=45 Identities=9% Similarity=0.271 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy18194 91 LEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNN 135 (157)
Q Consensus 91 ~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~ 135 (157)
..++.+|..++..++..+.....+..++..+...++.++..|-+-
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~el 61 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTEL 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 368899999999999999999999999999999999998877554
No 15
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=73.26 E-value=12 Score=22.09 Aligned_cols=43 Identities=12% Similarity=0.272 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy18194 93 YEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNN 135 (157)
Q Consensus 93 ~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~ 135 (157)
+++++.+|+..++..+-..++|..+....+..+...+..|+..
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777777777777777777777777777777777653
No 16
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=71.78 E-value=18 Score=23.66 Aligned_cols=45 Identities=9% Similarity=0.212 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy18194 91 LEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNN 135 (157)
Q Consensus 91 ~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~ 135 (157)
..++.+|..++..++..+.....+..++..+...++.++..|-+.
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~el 67 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSEL 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 478999999999999999999999999999999999998776553
No 17
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=70.14 E-value=20 Score=23.57 Aligned_cols=31 Identities=10% Similarity=0.287 Sum_probs=18.7
Q ss_pred hccceecCCchHHHHHHHHHHHHHHHHHHHc
Q psy18194 29 ANKPHINEDPKDTMLREYQEEIRQLRALLES 59 (157)
Q Consensus 29 ~n~~~vn~~~~~~~i~~l~~ei~~L~~~L~~ 59 (157)
+.+|-++.......+..+..++..++..|..
T Consensus 2 kVKPLL~~~~~eeEm~~~eeel~~lke~l~k 32 (89)
T 3bas_A 2 SHMPLLSIARQEEEMKEQLKQMDKMKEDLAK 32 (89)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666678888899999999888753
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=66.41 E-value=37 Score=32.12 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRD 128 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 128 (157)
.+++++..+++++.....+...+++.+..++..++.+
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~k 1024 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333333333
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.98 E-value=41 Score=28.69 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy18194 41 TMLREYQEEIRQLRALL 57 (157)
Q Consensus 41 ~~i~~l~~ei~~L~~~L 57 (157)
..+..++.++...+..+
T Consensus 477 ~~l~~~~~~i~~~~~~~ 493 (597)
T 3oja_B 477 QLLQGLHAEIDTNLRRY 493 (597)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhhhc
Confidence 34445555555554443
No 20
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=62.40 E-value=33 Score=23.10 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccc
Q psy18194 91 LEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNNSIN 139 (157)
Q Consensus 91 ~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~~~~~ 139 (157)
++|+.++...-.++..-++....|+..-..++..|++.+..|...|..+
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788888777777888888888899999999999999999999887543
No 21
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=59.70 E-value=36 Score=22.66 Aligned_cols=41 Identities=34% Similarity=0.443 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 88 KLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRD 128 (157)
Q Consensus 88 ~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 128 (157)
.+..-|+..|..++.++.....++.++.-++..|......-
T Consensus 49 ~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 49 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456899999999999999999999888888776655543
No 22
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.17 E-value=50 Score=22.96 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcc
Q psy18194 40 DTMLREYQEEIRQLRALLESS 60 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~~~ 60 (157)
...|.+++..|..|..+|.+.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l 55 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNV 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666543
No 23
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=51.96 E-value=1.1e+02 Score=26.68 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18194 41 TMLREYQEEIRQLRALLE 58 (157)
Q Consensus 41 ~~i~~l~~ei~~L~~~L~ 58 (157)
+-+..|+.|+++.+..-+
T Consensus 9 ~~la~yq~elarvqkana 26 (497)
T 3iox_A 9 AKLTAYQTELARVQKANA 26 (497)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566777766666443
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=51.41 E-value=59 Score=22.65 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy18194 40 DTMLREYQEEIRQLRALLE 58 (157)
Q Consensus 40 ~~~i~~l~~ei~~L~~~L~ 58 (157)
...+..+..++..|+..|.
T Consensus 12 e~E~~~~~eel~~lke~l~ 30 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALE 30 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666553
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.87 E-value=47 Score=23.18 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy18194 42 MLREYQEEIRQLRALLE 58 (157)
Q Consensus 42 ~i~~l~~ei~~L~~~L~ 58 (157)
.|.+++..|..|..+|.
T Consensus 39 Ei~elrr~iq~L~~el~ 55 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQ 55 (131)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444544443
No 26
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=46.63 E-value=87 Score=23.26 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERN 109 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~ 109 (157)
+++.+|..|..+++..+.
T Consensus 94 elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 27
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.51 E-value=53 Score=20.77 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKE 123 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~ 123 (157)
+++.++..++........+...|..++..|..
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444444444444444444443
No 28
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=46.32 E-value=64 Score=24.02 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhccccCCCCc
Q psy18194 90 RLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNNSINTGSTDI 145 (157)
Q Consensus 90 ~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e~~~~~~~~~~~ 145 (157)
.++.+.-+..-...++.++.....+.++......++..++..|.+.+..-+.|..|
T Consensus 18 ~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i 73 (169)
T 3k29_A 18 VDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAI 73 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 34556666777777888888888889999999999999999998888766655444
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.83 E-value=1.5e+02 Score=28.05 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q psy18194 46 YQEEIRQLRALL 57 (157)
Q Consensus 46 l~~ei~~L~~~L 57 (157)
|+..|..|...|
T Consensus 926 LE~kl~eLq~rL 937 (1080)
T 2dfs_A 926 LENKIMQLQRKI 937 (1080)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.17 E-value=1.1e+02 Score=25.29 Aligned_cols=37 Identities=0% Similarity=-0.043 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18194 97 MEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIG 133 (157)
Q Consensus 97 i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~ 133 (157)
....+.+....+++.+++...+.++.........+++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 3334444444445555555555555555544444443
No 31
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.14 E-value=81 Score=21.91 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy18194 114 MEADLQALKEQ 124 (157)
Q Consensus 114 l~~~l~~l~~~ 124 (157)
|+.++..++..
T Consensus 89 lE~eL~~~r~e 99 (131)
T 3tnu_A 89 VEEQLAQLRCE 99 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334333333
No 32
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=41.32 E-value=85 Score=21.59 Aligned_cols=46 Identities=11% Similarity=0.283 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhchh
Q psy18194 91 LEYEAEMEKLREQYNAERNSK-------SKMEADLQALKEQYQRDMENIGNNN 136 (157)
Q Consensus 91 ~e~e~~i~~l~~~~~~~~~~~-------~~l~~~l~~l~~~~~~~~~~l~e~~ 136 (157)
...+..+..++..+......+ ..|.++|.-++..|++.+..|+.++
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555554443333 3466666777777888888877654
No 33
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=40.10 E-value=57 Score=20.57 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 82 TPLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQ 126 (157)
Q Consensus 82 ~~~E~~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 126 (157)
...+...+...-+..|..|+..+.....+...|..++...+..+.
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555566677778877777666666666666665555443
No 34
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=40.04 E-value=81 Score=21.00 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 91 LEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQR 127 (157)
Q Consensus 91 ~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~ 127 (157)
..++.++..+..+.+....+...+..++..++..|+.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777778777777788888888888777776653
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.42 E-value=93 Score=21.51 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy18194 46 YQEEIRQLRALL 57 (157)
Q Consensus 46 l~~ei~~L~~~L 57 (157)
.+.||..++..+
T Consensus 34 ~k~Ei~elrr~i 45 (129)
T 3tnu_B 34 TKHEISEMNRMI 45 (129)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 36
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.43 E-value=68 Score=19.67 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 93 YEAEMEKLREQYNAERNSKSKMEADLQALKEQY 125 (157)
Q Consensus 93 ~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~ 125 (157)
-.+.+..|+..+.....+...|..++..|+..+
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555443
No 37
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=37.21 E-value=1e+02 Score=21.34 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhccc
Q psy18194 114 MEADLQALKEQYQRDMENIGNNNSIN 139 (157)
Q Consensus 114 l~~~l~~l~~~~~~~~~~l~e~~~~~ 139 (157)
-+..|..|+..+......+++.+..-
T Consensus 57 sE~~L~~Lqq~fsq~q~~vq~qL~~L 82 (112)
T 1x79_B 57 SEILLEELQQGLSQAKRDVQEQMAVL 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555443
No 38
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.56 E-value=3.1e+02 Score=29.47 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 91 LEYEAEMEKLREQYNAERNSKSKMEADLQALKE 123 (157)
Q Consensus 91 ~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~ 123 (157)
.++++++..++.+|+....++..|+.++...+.
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666665555555555555544433
No 39
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=34.10 E-value=55 Score=17.30 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 98 EKLREQYNAERNSKSKMEADLQALKEQ 124 (157)
Q Consensus 98 ~~l~~~~~~~~~~~~~l~~~l~~l~~~ 124 (157)
..++.+....+.+...|.=++..+++.
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344444444444444455555555443
No 40
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.78 E-value=1.6e+02 Score=22.57 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18194 97 MEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGN 134 (157)
Q Consensus 97 i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~e 134 (157)
+..++..+.........+...+...+..++..+..++.
T Consensus 120 ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~ 157 (256)
T 3na7_A 120 IKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKE 157 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555555555544443
No 41
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=33.58 E-value=1.2e+02 Score=21.11 Aligned_cols=10 Identities=30% Similarity=0.414 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy18194 47 QEEIRQLRAL 56 (157)
Q Consensus 47 ~~ei~~L~~~ 56 (157)
..|+.+|+..
T Consensus 38 ~~ELeRLr~~ 47 (115)
T 3vem_A 38 LHELEKLRRE 47 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 42
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.38 E-value=1e+02 Score=20.25 Aligned_cols=18 Identities=6% Similarity=0.326 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18194 108 RNSKSKMEADLQALKEQY 125 (157)
Q Consensus 108 ~~~~~~l~~~l~~l~~~~ 125 (157)
..+...|..++..|...+
T Consensus 49 e~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 49 TAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 43
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=32.52 E-value=64 Score=17.61 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 97 MEKLREQYNAERNSKSKMEADLQALK 122 (157)
Q Consensus 97 i~~l~~~~~~~~~~~~~l~~~l~~l~ 122 (157)
+.+++...+..-..+..|+.++..|+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444434433444444444444443
No 44
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.95 E-value=91 Score=18.89 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 98 EKLREQYNAERNSKSKMEADLQALK 122 (157)
Q Consensus 98 ~~l~~~~~~~~~~~~~l~~~l~~l~ 122 (157)
..|+.+......+...|..++..|.
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444443
No 45
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=30.64 E-value=74 Score=18.93 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 98 EKLREQYNAERNSKSKMEADLQALKE 123 (157)
Q Consensus 98 ~~l~~~~~~~~~~~~~l~~~l~~l~~ 123 (157)
..|+........+...|..++..|..
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444445555554443
No 46
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.39 E-value=1.1e+02 Score=25.62 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHcc
Q psy18194 45 EYQEEIRQLRALLESS 60 (157)
Q Consensus 45 ~l~~ei~~L~~~L~~~ 60 (157)
.+...|..|+..|...
T Consensus 64 ~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 64 DFTSRINKLRDSLFNY 79 (390)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444555555555443
No 47
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=30.07 E-value=1.3e+02 Score=20.22 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHccC
Q psy18194 38 PKDTMLREYQEEIRQLRALLESSG 61 (157)
Q Consensus 38 ~~~~~i~~l~~ei~~L~~~L~~~~ 61 (157)
......+.++.|+..|+.++....
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~stS 43 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSIS 43 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HhHHHHHHHHHHHHHHHHHHhccc
Confidence 445677889999999999887553
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.87 E-value=93 Score=18.63 Aligned_cols=27 Identities=7% Similarity=0.298 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 98 EKLREQYNAERNSKSKMEADLQALKEQ 124 (157)
Q Consensus 98 ~~l~~~~~~~~~~~~~l~~~l~~l~~~ 124 (157)
..|+........+...|..++..|+..
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444433
No 49
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=29.72 E-value=72 Score=17.33 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy18194 108 RNSKSKMEADLQALK 122 (157)
Q Consensus 108 ~~~~~~l~~~l~~l~ 122 (157)
-.+...|+.++..|+
T Consensus 13 l~~n~~Le~EV~RLk 27 (33)
T 3m48_A 13 LSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 344444444444443
No 50
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=29.68 E-value=69 Score=23.73 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhh
Q psy18194 119 QALKEQYQRDMENIG 133 (157)
Q Consensus 119 ~~l~~~~~~~~~~l~ 133 (157)
.+|+..|++++...+
T Consensus 22 ~el~~tWeeKl~~te 36 (184)
T 4egx_A 22 AELNETWEEKLRRTE 36 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH
Confidence 334444555444433
No 51
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.07 E-value=78 Score=17.50 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 98 EKLREQYNAERNSKSKMEADLQALKE 123 (157)
Q Consensus 98 ~~l~~~~~~~~~~~~~l~~~l~~l~~ 123 (157)
.+|+...+.....+..|+.++..|+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33433333333444444444444443
No 52
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.32 E-value=2.5e+02 Score=23.19 Aligned_cols=15 Identities=7% Similarity=0.457 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhch
Q psy18194 121 LKEQYQRDMENIGNN 135 (157)
Q Consensus 121 l~~~~~~~~~~l~e~ 135 (157)
++..+.-.+..+..+
T Consensus 46 ~rr~l~n~~~elkgn 60 (403)
T 4etp_A 46 VRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCC
Confidence 344444455555443
No 53
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.37 E-value=84 Score=17.36 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy18194 113 KMEADLQAL 121 (157)
Q Consensus 113 ~l~~~l~~l 121 (157)
.|+.++..|
T Consensus 19 ~Le~EV~RL 27 (36)
T 1kd8_A 19 HLENEVARL 27 (36)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.31 E-value=1.4e+02 Score=19.61 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 87 EKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQ 126 (157)
Q Consensus 87 ~~~~~e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 126 (157)
......++.++..+...+.........+..++..+...|.
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577777788877777777777777777777777766
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.13 E-value=80 Score=27.76 Aligned_cols=92 Identities=12% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHccCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHH
Q psy18194 19 LRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEME 98 (157)
Q Consensus 19 L~fA~rAk~I~n~~~vn~~~~~~~i~~l~~ei~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~e~e~~i~ 98 (157)
..|-.|.-.|++...-........-..++.-...|+..+.... +.+.-...+.++++.++.
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-------------------dNdNtynE~S~ELRRrIq 120 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-------------------NRDNTYNRVSEDLRSRIE 120 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-------------------HHHHHHHHTTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-------------------ccchhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18194 99 KLREQYNAERNSKSKMEADLQALKEQYQRDMENIG 133 (157)
Q Consensus 99 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~l~ 133 (157)
-|+..+.........|+..|..+. .++++|+
T Consensus 121 yLKekVdnQlsnIrvLQsnLedq~----~kIQRLE 151 (562)
T 3ghg_A 121 VLKRKVIEKVQHIQLLQKNVRAQL----VDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
No 56
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.13 E-value=87 Score=17.09 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 98 EKLREQYNAERNSKSKMEADLQALK 122 (157)
Q Consensus 98 ~~l~~~~~~~~~~~~~l~~~l~~l~ 122 (157)
.+|+...+..-..+..|+.++..|+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444433333344444444444443
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.20 E-value=3.1e+02 Score=23.08 Aligned_cols=11 Identities=36% Similarity=0.591 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy18194 45 EYQEEIRQLRA 55 (157)
Q Consensus 45 ~l~~ei~~L~~ 55 (157)
.+..++..|+.
T Consensus 460 ~~~~~i~~l~~ 470 (597)
T 3oja_B 460 ELRAEVQQLTN 470 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 58
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.96 E-value=92 Score=16.99 Aligned_cols=23 Identities=4% Similarity=0.192 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 99 KLREQYNAERNSKSKMEADLQAL 121 (157)
Q Consensus 99 ~l~~~~~~~~~~~~~l~~~l~~l 121 (157)
+++...+..-.....|..++..|
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHH
Confidence 33333333333333444444433
No 59
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.85 E-value=1.4e+02 Score=19.12 Aligned_cols=15 Identities=7% Similarity=0.344 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy18194 108 RNSKSKMEADLQALK 122 (157)
Q Consensus 108 ~~~~~~l~~~l~~l~ 122 (157)
..+...|..++..|.
T Consensus 49 ~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 49 TAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 60
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.69 E-value=79 Score=16.09 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy18194 105 NAERNSKSKMEADLQA 120 (157)
Q Consensus 105 ~~~~~~~~~l~~~l~~ 120 (157)
...+++...|+-++..
T Consensus 10 arlkqeiaaleyeiaa 25 (28)
T 3ra3_B 10 ARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 61
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=23.44 E-value=2.2e+02 Score=26.90 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18194 41 TMLREYQEEIRQLRALLE 58 (157)
Q Consensus 41 ~~i~~l~~ei~~L~~~L~ 58 (157)
..+..+..++..++..|.
T Consensus 857 ~El~~L~~eL~el~~~L~ 874 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQ 874 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555554443
No 62
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=22.85 E-value=2e+02 Score=23.00 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 96 EMEKLREQYNAERNSKSKMEADLQALKEQ 124 (157)
Q Consensus 96 ~i~~l~~~~~~~~~~~~~l~~~l~~l~~~ 124 (157)
++..++.+.....++...|+.....+...
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444444444444444444444444433
No 63
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.61 E-value=1e+02 Score=16.68 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy18194 109 NSKSKMEADLQALK 122 (157)
Q Consensus 109 ~~~~~l~~~l~~l~ 122 (157)
..+..|+.++..|+
T Consensus 14 ~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 14 SKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHH
Confidence 33334444444433
No 64
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.79 E-value=1.7e+02 Score=18.43 Aligned_cols=11 Identities=0% Similarity=0.042 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy18194 93 YEAEMEKLREQ 103 (157)
Q Consensus 93 ~e~~i~~l~~~ 103 (157)
++.++..++.+
T Consensus 52 L~~~~~~l~~e 62 (83)
T 1nkp_B 52 MRRKNHTHQQD 62 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 65
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.35 E-value=2e+02 Score=19.23 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18194 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQY 125 (157)
Q Consensus 92 e~e~~i~~l~~~~~~~~~~~~~l~~~l~~l~~~~ 125 (157)
-+.+++.--+..+..++..+.++..+...|...+
T Consensus 44 vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql 77 (94)
T 3jsv_C 44 VLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4555666666667777777666666655554433
Done!