RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18194
(157 letters)
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 110 bits (278), Expect = 6e-30
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLE 58
++A ++P Y +T+S L +A R+K + N+P NE + L + ++L E
Sbjct: 320 LIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLSQKELLGPPE 377
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 104 bits (262), Expect = 1e-27
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQ 47
MVA + PA N +ETL+TLRYANRAKNI NKP +NEDPKD +LRE+Q
Sbjct: 326 MVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 104 bits (261), Expect = 1e-27
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQ 52
++ SP+ N ETLSTLR+ RAK+I NK +N + L++ + +
Sbjct: 303 LIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQMLAKAKT 354
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 103 bits (259), Expect = 3e-27
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDP-KDTMLREYQEEIRQLRAL 56
+V C SPA N ET STL + RAK + N +NE+ + R Y++E + L
Sbjct: 306 IVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARL 362
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 94.9 bits (237), Expect = 4e-24
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEE 49
++ ++P ++DETL+ L++A+ AK + N P++NE D + +
Sbjct: 303 IICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHHHH 349
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 89.3 bits (222), Expect = 5e-24
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINED-PKDTMLREYQEEIRQLRALLE 58
+V C SP+ N ET STL + RAK I N +N + + ++Y++E + +AL
Sbjct: 45 IVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKS 103
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 94.2 bits (235), Expect = 6e-24
Identities = 30/43 (69%), Positives = 34/43 (79%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTML 43
M A +SPA NYDET+STLRYA+RAK I NKP INEDPKD +
Sbjct: 308 MCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 92.6 bits (231), Expect = 3e-23
Identities = 26/40 (65%), Positives = 28/40 (70%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKD 40
MVA LSPAD NYDETLSTLRYA+RAK I N +N
Sbjct: 327 MVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHHHHH 366
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 86.2 bits (214), Expect = 5e-23
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINED-PKDTMLREYQEEI 50
+V C SP+ N ET STL + RAK I N +N + + ++Y++E
Sbjct: 49 IVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEK 99
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 90.4 bits (225), Expect = 2e-22
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLESS 60
M +SPA++N DET ++L YA+R ++I N P N K+ + ++ + +
Sbjct: 300 MFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE--VARLKKLVSYWKEQAGRK 357
Query: 61 GS 62
G
Sbjct: 358 GD 359
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 88.6 bits (220), Expect = 2e-21
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLR 54
M+AC+SP D YDETLSTLRYA++AK I + +N+ + E +I +
Sbjct: 388 MIACISPTD--YDETLSTLRYADQAKRIRTRAVVNQVDGVSAA-ERDAQIPSIV 438
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 85.0 bits (211), Expect = 2e-20
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINED 37
++A +SP + +ETLSTL YA+RAKNI NKP +N+
Sbjct: 334 IIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQK 370
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 84.6 bits (210), Expect = 2e-20
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRA 55
M+A +SP + ++TL+TLRY++R KN N + + +L
Sbjct: 304 MIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLLGLDSSRTGHHHH 358
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 84.2 bits (209), Expect = 3e-20
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHINE 36
++A +SPA N +ETLSTL YA+RAKNI NKP +N+
Sbjct: 323 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 83.0 bits (206), Expect = 9e-20
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHIN 35
+AC+SP + ETLSTLR+ AK A + H +
Sbjct: 308 FLACISPHQCDLSETLSTLRFGTSAKAAALEHHHH 342
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 77.7 bits (192), Expect = 9e-18
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKPHIN 35
M+A +SP ++ + TL+TLRYA+R K +++ H +
Sbjct: 375 MIAMISPGISSCEYTLNTLRYADRVKELSHHHHHH 409
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 75.0 bits (185), Expect = 9e-17
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNI-ANKPHINEDPKDTMLREYQEE 49
M +SP + + E++ +LR+A + K N +++ +
Sbjct: 355 MFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVANSSTQS 404
Score = 28.4 bits (64), Expect = 0.88
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 94 EAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDME 130
E+ LR++ + A+L+ KEQ +
Sbjct: 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNM 45
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 74.1 bits (183), Expect = 2e-16
Identities = 21/30 (70%), Positives = 26/30 (86%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIAN 30
MVA +SPA +NYDETLSTLRYA+RAK+ +
Sbjct: 323 MVATVSPAADNYDETLSTLRYADRAKHHHH 352
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 73.4 bits (181), Expect = 2e-16
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKP 32
M+A +SP ++ + TL+TLRYA+R K ++
Sbjct: 355 MIATISPGISSCEYTLNTLRYADRVKELSPHS 386
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 71.1 bits (175), Expect = 2e-15
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNI 28
M+A +SP+ YD+T +TL+YANRAK+I
Sbjct: 328 MIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 67.6 bits (166), Expect = 3e-14
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNI 28
+V C SP+ N ET STL + RAK I
Sbjct: 298 IVICCSPSSYNESETKSTLLFGQRAKTI 325
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 66.4 bits (163), Expect = 8e-14
Identities = 15/26 (57%), Positives = 24/26 (92%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAK 26
M+AC+SP+ +++DETL+TL YA+RA+
Sbjct: 319 MIACVSPSSSDFDETLNTLNYASRAQ 344
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 65.7 bits (161), Expect = 1e-13
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKP 32
M + P N+ ETL++LR+A++ +
Sbjct: 317 MFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 65.4 bits (160), Expect = 2e-13
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNI 28
+V + +ETLS+LR+A+R K +
Sbjct: 331 LVTNIYGEAAQLEETLSSLRFASRMKLV 358
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 64.5 bits (158), Expect = 3e-13
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKP 32
M +SP+ ++ +ETL++LR+A++ +
Sbjct: 314 MFVNISPSSSHINETLNSLRFASKVNSTRLVS 345
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 63.0 bits (154), Expect = 1e-12
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNIANKP 32
M +SP+ ++ +ETL++LR+A++ +
Sbjct: 370 MFVNISPSSSHINETLNSLRFASKVNSTRLVS 401
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 58.7 bits (143), Expect = 4e-11
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAKNI 28
MV +SP + N ETL +L++A R +++
Sbjct: 301 MVVQVSPVEKNTSETLYSLKFAERVRSV 328
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 55.4 bits (134), Expect = 7e-10
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 1 MVACLSPADNNYDETLSTLRYANRAK 26
M +SP + N E+L++LR+A++
Sbjct: 349 MFVNISPLEENVSESLNSLRFASKVN 374
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.004
Identities = 16/107 (14%), Positives = 44/107 (41%), Gaps = 28/107 (26%)
Query: 28 IANKPHINEDPKDTMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKE 87
IA + ++P+ +R+++EE ++ R L+ +D+ + + ++
Sbjct: 74 IAQADRLTQEPE--SIRKWREE-QRKR--LQ------------------ELDAASKVMEQ 110
Query: 88 KLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQY--QRDMENI 132
+ R + + + L E + K + + + + + Q D + I
Sbjct: 111 EWREKAKKD---LEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
Score = 34.4 bits (78), Expect = 0.007
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 85 EKEKLRL---EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNNSINTG 141
E E +R E +++L + + + +A + L+E QR E + N N
Sbjct: 83 EPESIRKWREEQRKRLQELDAA-SKVMEQEWREKAK-KDLEEWNQRQSEQVEKNKINNRI 140
Query: 142 STDILSTDPDKEFSSK 157
+ DK F +
Sbjct: 141 A--------DKAFYQQ 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.019
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 22/122 (18%)
Query: 15 TLSTLRYAN--RAKNIANKPHIN-EDPKDTMLREYQEEIRQLRALLESSGSVPLSGGVCM 71
L T R+ + A HI+ + T+ + + + L+ L +P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLP------- 319
Query: 72 MNSSSAMDSTTPLE----KEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQR 127
+ +T P E +R + A + + N ++ + +E+ L L+ R
Sbjct: 320 ----REVLTTNPRRLSIIAESIR-DGLATWDNWK-HVNCDKLTTI-IESSLNVLEPAEYR 372
Query: 128 DM 129
M
Sbjct: 373 KM 374
Score = 27.9 bits (61), Expect = 1.6
Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 46/148 (31%)
Query: 10 NNYDETLSTLRYANRAKNIANKPHINEDP--KDTMLREYQEEIRQLRALLESSGSVPLSG 67
++ D +Y K+I + ED + ++ Q+ + + LS
Sbjct: 5 HHMDFETGEHQYQY--KDIL---SVFEDAFVDNFDCKDVQDMPKSI-----------LSK 48
Query: 68 GVC--MMNSSSAMDST-----TPLEKEK----------LRLEYEAEMEKLREQYNAERNS 110
++ S A+ T T L K++ LR+ Y+ M ++ +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR----- 103
Query: 111 KSKMEADLQALKEQYQRDMENIGNNNSI 138
+ Y + + N+N +
Sbjct: 104 ------QPSMMTRMYIEQRDRLYNDNQV 125
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.5 bits (74), Expect = 0.046
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 40 DTMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAEMEK 99
+ E Q +I +L+A L + + +++ K E E+ +
Sbjct: 1073 HEQIAELQAQIAELKAQLAK-----KEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
Query: 100 LREQYNAERNSKSKMEADLQALKEQYQRDMENI 132
L+E +E+ +++K E + L E+ + +
Sbjct: 1128 LQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160
Score = 29.4 bits (66), Expect = 0.61
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 85 EKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQ 126
E E++ E EA +E+ E+ + K KM+ + L+EQ +
Sbjct: 924 ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Score = 27.5 bits (61), Expect = 2.4
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 85 EKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNNS 137
++EK R E E KL + + ++++A + LK Q + E + +
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 31.4 bits (72), Expect = 0.12
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 82 TPLEKEKLRLEYEAEMEKLREQYNA----ERNSKSKMEADLQALKEQY 125
LE+ K+R E E+EK R+Q ER + ++ +LQA + Y
Sbjct: 400 AKLEEMKIRGEQS-ELEKERDQLQGILASERKMNNLLKKELQADAQAY 446
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.5 bits (69), Expect = 0.22
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 85 EKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENI 132
E+ K +M L Y+ E L+ +E+ + +
Sbjct: 939 EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986
Score = 27.0 bits (60), Expect = 3.8
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 85 EKEKLRLEYEAEMEKLR---EQYNAERNSKSKMEADLQALKEQYQRDMENI 132
+ L + Y E EKLR E+ + +L+E+ + + +
Sbjct: 950 KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 30.0 bits (68), Expect = 0.29
Identities = 6/48 (12%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 82 TPLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEA----DLQALKEQY 125
LE+ ++R E + E+ + + ++ +L+ +++
Sbjct: 694 AKLEEMEIRHEQD-ELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed
4-stranded beta sheet, 2-stranded antiparallel sheet;
NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB:
1jkn_A*
Length = 165
Score = 29.1 bits (66), Expect = 0.39
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 35 NEDPKDTMLREYQEEI 50
EDP++ +RE +EE
Sbjct: 50 GEDPRNAAIRELREET 65
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese,
zinc; NMR {Escherichia coli} PDB: 2kdw_A
Length = 164
Score = 29.0 bits (66), Expect = 0.48
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 35 NEDPKDTMLREYQEEI 50
E + M RE EE+
Sbjct: 43 GESAEQAMYRELFEEV 58
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 28.8 bits (64), Expect = 0.93
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 77 AMDSTTPLEKEKLRLEYEAEMEKLREQYNAERNSKSKM-EADLQALKEQYQRDME 130
+ S T +KL + + + +L + S + DL+A + YQ ++
Sbjct: 700 RIWSLTKERYQKLLKQKQEKETELEN---LLKLSAKDIWNTDLKAFEVGYQEFLQ 751
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 27.6 bits (62), Expect = 1.1
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 25/80 (31%)
Query: 46 YQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLE---YEAEMEKLRE 102
Y+EE+R+LR ++ + +K ++ +E ++ +LRE
Sbjct: 18 YEEEMRELRRQVDQLTN----------------------DKARVEVERDNLAEDIMRLRE 55
Query: 103 QYNAERNSKSKMEADLQALK 122
+ E + + E LQ+ +
Sbjct: 56 KLQEEMLQREEAENTLQSFR 75
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 233
Score = 28.1 bits (63), Expect = 1.1
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 56 LLESSGSVPLSGGVCMMNSSSAMDSTTPLEK-EKLRLEYEAEMEKLREQYN 105
L + SG +SGG + + + ++K ++ + E+ + ++
Sbjct: 185 LFQKSGV--ISGGASDLKAKARRWDEKAVDKLKEKKGRLTEELLEHHHHHH 233
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 28.0 bits (63), Expect = 1.1
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 84 LEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQR---DMENI 132
+E+ E ++E + ++ A E +L+ LK++Y R D +N
Sbjct: 1 MEERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNY 52
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding,
hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima
MSB8} PDB: 2x7w_A*
Length = 287
Score = 28.3 bits (63), Expect = 1.2
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 16 LSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLE 58
K I P I E P E+ E+I+++ ++E
Sbjct: 240 EEGFAVFFSFKEIQEVPWILETPGG--NEEHAEDIKKVFEIIE 280
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 26.8 bits (60), Expect = 1.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 85 EKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQ 124
K +L YE EM +LR Q + N K+++E + L E
Sbjct: 46 GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAED 85
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.6
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 107 ERNSKSKMEADLQALKEQYQRD 128
E+ + K++A L+ Y D
Sbjct: 18 EKQALKKLQASLKL----YADD 35
Score = 27.2 bits (59), Expect = 1.7
Identities = 6/32 (18%), Positives = 18/32 (56%), Gaps = 8/32 (25%)
Query: 47 QEEIRQLRALLE--SSGSVP-LSGGVCMMNSS 75
++ +++L+A L+ + S P L+ + ++
Sbjct: 19 KQALKKLQASLKLYADDSAPALA-----IKAT 45
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 27.0 bits (60), Expect = 2.0
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 31 KPHINEDPKDTMLREYQEE 49
ED +T LR QEE
Sbjct: 49 HVEPGEDDLETALRATQEE 67
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT
family, riken structural genomics/proteomics initiative,
RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A
1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Length = 170
Score = 27.2 bits (61), Expect = 2.1
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 35 NEDPKDTMLREYQEEIRQLRALLESSGSVPLSGGVC 70
EDP + RE E+ L L S +S G
Sbjct: 72 GEDPLEAARRELAEQTG-LSGDLTYLFSYFVSPGFT 106
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP:
d.113.1.1 PDB: 1jrk_A 1k26_A
Length = 156
Score = 26.8 bits (59), Expect = 2.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 35 NEDPKDTMLREYQEE 49
NE P + + RE++EE
Sbjct: 35 NETPIEAVKREFEEE 49
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center
for structural GENO JCSG, protein structure initiative,
PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Length = 149
Score = 26.8 bits (59), Expect = 2.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 35 NEDPKDTMLREYQEEI 50
E +T RE EE+
Sbjct: 43 EEAISETAKRESIEEL 58
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM
barrel, endonucle hydrolase, structural genomics,
NPPSFA; 1.58A {Thermus thermophilus}
Length = 270
Score = 27.1 bits (60), Expect = 2.5
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 18 TLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLESS 60
L+ + ++ I E P+ E +R RA LE +
Sbjct: 230 GLKRVFLDPRLKDRVFILETPRG--PEEDAWNLRVFRAWLEEA 270
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain,
hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB:
2p1e_A*
Length = 311
Score = 27.0 bits (60), Expect = 2.6
Identities = 2/41 (4%), Positives = 9/41 (21%), Gaps = 6/41 (14%)
Query: 15 TLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRA 55
T + ++ P ++ + +
Sbjct: 229 TSGFMTFS-----EKTFPD-RASDDLAFIQAQRAKYAAAVK 263
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 27.2 bits (61), Expect = 2.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 79 DSTTPLEKEKLRLEYEAEMEKLREQYN 105
D P +K ++ E EAE+ +++EQ+
Sbjct: 643 DMVIPEKKHEIISEAEAEVAEIQEQFQ 669
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative,
CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear
center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2
PDB: 2q42_A
Length = 254
Score = 27.1 bits (61), Expect = 2.7
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 15 TLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRA 55
TLS ++A + +P + +L+ Y + +LR+
Sbjct: 172 TLSNSKFAL---------SL--EPNNEVLQSYAAHVAELRS 201
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed
beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Length = 488
Score = 27.0 bits (59), Expect = 2.8
Identities = 9/78 (11%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 79 DSTTPLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMENIGNNNSI 138
+T + ++R + KL + + +++K E +L + ++R + + ++
Sbjct: 6 SNTNSVAASQMR----NALNKLADSSKLDDAARAKFENELDSFFTLFRRYLVEKSSRTTL 61
Query: 139 NTGSTDILSTDPDKEFSS 156
+ D ++
Sbjct: 62 EWDKIKSPNPDEVVKYEI 79
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 26.8 bits (60), Expect = 3.1
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 28 IANKPHINEDPKDTMLREYQEEIRQLRALLES 59
N+ + + L++Y++ + QL L+ +
Sbjct: 231 TYNQRALLK-----SLQDYRQHLDQLITLISN 257
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 26.9 bits (60), Expect = 3.2
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 28 IANKPHINEDPKDTMLREYQEEIRQLRALLES 59
+N + + L E + + R L +
Sbjct: 246 ESNAGPLVK-----ALDEALAILHEAREGLTA 272
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 26.9 bits (60), Expect = 3.2
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 79 DSTTPLEKEKLRLEYEAEMEKLREQYN 105
D+ P EK++ E + ++ ++ + Y
Sbjct: 694 DAVIPEEKQRYLEEADRKLRQIEQAYE 720
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome,
SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 26.8 bits (60), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 26 KNIANKPHINEDPKDTMLREYQEEIRQLRALLES 59
++++N INE+ + ML+ E+ ALLE+
Sbjct: 15 RSLSNATIINEEVLNAMLK----EVC--TALLEA 42
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding,
isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia
psychrerythraea} PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Length = 500
Score = 26.8 bits (60), Expect = 3.6
Identities = 8/48 (16%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 82 TPLEKEKLRLEYEAEMEKLREQYNAERNSKSK----MEADLQALKEQY 125
+ +E +K+ EY+A ++ + E + ++ + +L A+++++
Sbjct: 437 SGMEHDKILSEYKALLDLIAE-LMHILATPARLMEVICEELVAIRDEF 483
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily,
salmonella typhimurium LT2; 1.45A {Salmonella
typhimurium} SCOP: d.157.1.2
Length = 258
Score = 26.4 bits (59), Expect = 4.1
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 11/41 (26%)
Query: 15 TLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRA 55
TL+ +++A I P D+ + EY ++++LR
Sbjct: 175 TLANIKFAL---------SI--LPHDSFINEYYRKVKELRV 204
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose
pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo
sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A*
3l85_A*
Length = 212
Score = 26.3 bits (58), Expect = 4.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 35 NEDPKDTMLREYQEEIRQLRALLESSGSVPLSGGVC 70
E P+ LRE +EE + E S +V + G+
Sbjct: 104 GETPEAAALRELEEETGYKGDIAECSPAVCMDPGLS 139
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
2.80A {Staphylococcus aureus}
Length = 514
Score = 26.3 bits (59), Expect = 4.4
Identities = 8/47 (17%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 82 TPLEKEKLRLEYE---AEMEKLREQYNAERNSKSKMEADLQALKEQY 125
T + L E++ A +++LR + + ++ +L +K+++
Sbjct: 452 TNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKF 498
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV,
GRAM-positive bacteria, quinolone target, DNA binding,
DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae}
PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
3rad_A* 3rae_A* 3raf_A*
Length = 496
Score = 26.3 bits (59), Expect = 5.1
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 82 TPLEKEKLRLEYE---AEMEKLREQYNAERNSKSKMEADLQALKEQY 125
T + L+ E ++ L ER + M+ +L+ +K+++
Sbjct: 428 TNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKF 474
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP
pyrophosphohydrolase MUTT dihydroneo triphosphate
pyrophosphohydrolase folate biosynthesis; 1.80A
{Escherichia coli} PDB: 2o5w_A
Length = 150
Score = 25.6 bits (56), Expect = 5.2
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 35 NEDPKDTMLREYQEEI 50
E +RE +EE+
Sbjct: 46 GETAPQAAMREVKEEV 61
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 26.3 bits (58), Expect = 5.4
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 79 DSTTPLEKEKLRLEYEAEMEKLREQYN 105
D+ P EK++ E + ++ ++ + Y
Sbjct: 953 DAVIPEEKKQYLEEADRKLLQIEQAYE 979
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans,
hydrolase; 1.70A {Deinococcus radiodurans} SCOP:
d.113.1.1 PDB: 1nqy_A
Length = 194
Score = 25.7 bits (57), Expect = 5.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 35 NEDPKDTMLREYQEEI 50
E P LRE QEE+
Sbjct: 76 GETPTQAALREAQEEV 91
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic
resistance, breakage-reunion domain, struct genomics;
HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB:
3ifz_A*
Length = 470
Score = 25.9 bits (58), Expect = 6.0
Identities = 4/48 (8%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 82 TPLEKEKLRLEYEAEMEKLREQYNAERNSKSK----MEADLQALKEQY 125
LE++++ + ++E + + +L + +++
Sbjct: 414 AALERQRIIDDLA-KIEAEIADLEDILAKPERQRGIVRDELAEIVDRH 460
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 25.5 bits (56), Expect = 6.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 31 KPHINEDPKDTMLREYQEEI 50
K +E+ D +RE +EEI
Sbjct: 36 KISKDENDIDCCIREVKEEI 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 24.5 bits (54), Expect = 7.8
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 84 LEKEKLRLEYE-----AEMEKLREQYNAERNSKSKMEADLQALK 122
L +K R+E E ++ +LRE+ E + + E LQ+ +
Sbjct: 12 LTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFR 55
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 25.5 bits (56), Expect = 8.0
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 73 NSSSAMDSTTPLEKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQR---DM 129
E AE E+ A + +++EA L ++ +Y R D
Sbjct: 30 QPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLSEMEHRYLRLYADF 89
Query: 130 ENI 132
EN
Sbjct: 90 ENF 92
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 25.9 bits (56), Expect = 8.2
Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 37 DPKDTMLREYQEEIRQLRALLESSGSVPLSGGVCMMNSSSAMDSTTPLEKEKLRLEYEAE 96
D ++ + E R+ + LE G + ++ +L+ + E E
Sbjct: 285 DLREQTHTRHYELYRRCK--LEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQ-KKEEE 341
Query: 97 MEKLREQYNAERNSKSK-MEADLQALKEQYQRDMEN 131
M ++ Q E+ ++ K E +L ++ ++ ++
Sbjct: 342 MRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQD 377
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase);
metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens}
SCOP: d.157.1.2 PDB: 1qh3_A*
Length = 260
Score = 25.6 bits (57), Expect = 8.3
Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 11/41 (26%)
Query: 15 TLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRA 55
T++ L++A +P + +RE ++ +
Sbjct: 176 TINNLKFARHV-----------EPGNAAIREKLAWAKEKYS 205
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase;
2.00A {Deinococcus radiodurans}
Length = 145
Score = 25.2 bits (56), Expect = 8.4
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 35 NEDPKDTMLREYQEEI 50
ED RE EE+
Sbjct: 44 GEDLGAAAARELLEEV 59
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
NYSGXRC, 11180K, structural genomics; 2.00A
{Lactobacillus brevis atcc 367}
Length = 161
Score = 25.4 bits (56), Expect = 8.7
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 35 NEDPKDTMLREYQEE 49
E +RE EE
Sbjct: 49 GEPCATAAIREVFEE 63
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD,
hydrol structural genomics, NPPSFA; HET: RBY; 1.66A
{Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Length = 182
Score = 25.2 bits (56), Expect = 8.8
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 35 NEDPKDTMLREYQEEI 50
E P+ RE +EE+
Sbjct: 80 GETPEAAARRELREEV 95
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 25.6 bits (57), Expect = 9.0
Identities = 4/34 (11%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 26 KNIANKPHINEDPKDTMLREYQEEIRQLRALLES 59
+ +++ +++ +I+ RAL+++
Sbjct: 13 NKLKAAAFVDKKLIKEVIK----DIQ--RALIQA 40
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Listeria monocytogenes str}
Length = 283
Score = 25.3 bits (55), Expect = 9.2
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 92 EYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDM 129
Y +M ++++Y ++ E D E + RD
Sbjct: 70 YYFKKMNHIKKKYASDLLIHIGFEVDYLIGYEDFTRDF 107
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 25.4 bits (55), Expect = 9.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 35 NEDPKDTMLREYQEEI 50
+E D +RE EE
Sbjct: 138 DESDVDCAIREVYEET 153
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 25.7 bits (57), Expect = 9.4
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 82 TPLEKEKLRLEYEAEMEKLREQYNAERNSKSK----MEADLQALKEQY 125
T LE++K+ EY E+ + + + +L +++++
Sbjct: 635 TGLERDKIEAEYN-ELLNYISELETILADEEVLLQLVRDELTEIRDRF 681
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding
protein; NMR {Homo sapiens} SCOP: a.21.1.1
Length = 99
Score = 24.7 bits (54), Expect = 9.5
Identities = 5/45 (11%), Positives = 20/45 (44%)
Query: 87 EKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALKEQYQRDMEN 131
EK +++Y + ++ ++++ + DL ++ + +
Sbjct: 54 EKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKLEHHHHH 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.122 0.324
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,243,809
Number of extensions: 120777
Number of successful extensions: 478
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 174
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 53 (24.1 bits)