RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18194
         (157 letters)



>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
           (Solanum tuberosum) [TaxId: 4113]}
          Length = 364

 Score = 77.7 bits (190), Expect = 3e-18
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 1   MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQLRALLESS 60
           M   +SPA++N DET ++L YA+R ++I N P  N   K+  +   ++ +   +      
Sbjct: 295 MFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE--VARLKKLVSYWKEQAGRK 352

Query: 61  GS 62
           G 
Sbjct: 353 GD 354


>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
          Length = 354

 Score = 73.4 bits (179), Expect = 1e-16
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 1   MVACLSPADNNYDETLSTLRYANRAKNIANKPHINEDPKDTMLREYQEEIRQ 52
           ++   SP+  N  ETLSTLR+  RAK+I NK  +N +     L++   + + 
Sbjct: 302 LIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQMLAKAKT 353


>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
           kinesin eg5 [TaxId: 9606]}
          Length = 345

 Score = 58.8 bits (141), Expect = 1e-11
 Identities = 20/31 (64%), Positives = 25/31 (80%)

Query: 1   MVACLSPADNNYDETLSTLRYANRAKNIANK 31
           ++A +SPA  N +ETLSTL YA+RAKNI NK
Sbjct: 315 IIATISPASLNLEETLSTLEYAHRAKNILNK 345


>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
           {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
           4932]}
          Length = 342

 Score = 56.9 bits (136), Expect = 7e-11
 Identities = 9/28 (32%), Positives = 20/28 (71%)

Query: 1   MVACLSPADNNYDETLSTLRYANRAKNI 28
           M   +SP+ ++ +ETL++LR+A++  + 
Sbjct: 312 MFVNISPSSSHINETLNSLRFASKVNST 339


>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 323

 Score = 56.1 bits (134), Expect = 1e-10
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 1   MVACLSPADNNYDETLSTLRYANRAKNI 28
           +V C SP+  N  ET STL +  RAK I
Sbjct: 296 IVICCSPSSYNESETKSTLLFGQRAKTI 323


>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
           10090]}
          Length = 362

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 13/29 (44%), Positives = 22/29 (75%)

Query: 1   MVACLSPADNNYDETLSTLRYANRAKNIA 29
           M+A +SP  ++ + TL+TLRYA+R K ++
Sbjct: 334 MIAMISPGISSCEYTLNTLRYADRVKELS 362


>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
           falciparum) [TaxId: 5833]}
          Length = 330

 Score = 55.4 bits (132), Expect = 2e-10
 Identities = 13/27 (48%), Positives = 21/27 (77%)

Query: 1   MVACLSPADNNYDETLSTLRYANRAKN 27
           M+A +SP  +  ++TL+TLRY++R KN
Sbjct: 304 MIANISPTISCCEQTLNTLRYSSRVKN 330


>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
           [TaxId: 10090]}
          Length = 349

 Score = 55.0 bits (131), Expect = 3e-10
 Identities = 23/26 (88%), Positives = 24/26 (92%)

Query: 1   MVACLSPADNNYDETLSTLRYANRAK 26
           MVA LSPAD NYDETLSTLRYA+RAK
Sbjct: 324 MVAALSPADINYDETLSTLRYADRAK 349


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 368

 Score = 51.1 bits (121), Expect = 7e-09
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 1   MVACLSPADNNYDETLSTLRYANRAKN 27
           M   +SP  + + E++ +LR+A    +
Sbjct: 341 MFINVSPFQDCFQESVKSLRFAASVNS 367



 Score = 24.9 bits (53), Expect = 4.8
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 85  EKEKLRLEYEAEMEKLREQYNAERNSKSKMEADLQALK 122
           E  +   +  AE+E  +EQ       + ++   +  L+
Sbjct: 7   ELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 44


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 29.4 bits (65), Expect = 0.22
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 78  MDSTTPLEKEKLRLEYEAEMEKLREQYNAERNSKSKM-EADLQALKEQYQRDME 130
           + S T    +KL  + + +  +L       + S   +   DL+A +  YQ  ++
Sbjct: 703 IWSLTKERYQKLLKQKQEKETELEN---LLKLSAKDIWNTDLKAFEVGYQEFLQ 753


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 28.4 bits (63), Expect = 0.34
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 82  TPLEKEKLRLEYEAEMEKLREQYNAERNSKSK----MEADLQALKEQY 125
           T LE EKL  EY+ E+     +      S  +    +  +L+ ++EQ+
Sbjct: 438 TGLEHEKLLDEYK-ELLDQIAELLRILGSADRLMEVIREELELVREQF 484


>d1wy5a2 d.229.1.1 (A:217-311) TilS-like protein Aq_1887 {Aquifex
          aeolicus [TaxId: 63363]}
          Length = 95

 Score = 25.5 bits (56), Expect = 1.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 48 EEIRQLRALLESSGSVPLSGGV 69
          E++  +R+LLE  G V L  G 
Sbjct: 65 EKVELVRSLLEKGGEVNLGKGK 86


>d1prtb1 b.40.2.1 (B:90-199) Pertussis toxin S2/S3 subunits,
          C-terminal domain {Bordetella pertussis [TaxId: 520]}
          Length = 110

 Score = 25.0 bits (54), Expect = 2.5
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 3  ACLSPADNNYDETLSTLR---YANRAKNIANKPHINED 37
          AC SP D  Y    S LR   Y      I+ + H++++
Sbjct: 44 ACTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKE 81


>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 158

 Score = 24.7 bits (53), Expect = 4.0
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 31 KPHINEDPKDTMLREYQEEI 50
               E+P+D  +RE  EE 
Sbjct: 50 AVEDGENPQDAAVREACEET 69


>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum
           cardiophyllum) [TaxId: 160510]}
          Length = 360

 Score = 24.2 bits (51), Expect = 9.2
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 71  MMNSSSAMDSTTPLEKEKLRLEYEAEMEKLREQYNAERNSK 111
           +  +++ MD  +    E L    E  ++K   + N E   +
Sbjct: 300 LTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPETYEE 340


>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
          domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 467

 Score = 24.2 bits (52), Expect = 10.0
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 32 PHINEDPKDTMLREYQEEIRQL 53
             N +P D  +RE + +I+++
Sbjct: 6  GVENREPADATIREKRAKIKEM 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.122    0.324 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 533,827
Number of extensions: 22329
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 51
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 49 (23.4 bits)