BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18197
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S8I|A Chain A, The Retroviral-Like Protease (Rvp) Domain Of Human Ddi1
pdb|3S8I|B Chain B, The Retroviral-Like Protease (Rvp) Domain Of Human Ddi1
Length = 148
Score = 181 bits (459), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/125 (69%), Positives = 96/125 (76%)
Query: 1 MLFINCCVNGVPVKAFVDSGAQTTIMSAECAERCAIMRLIDTRWAGVAKGVGIQRIIGRI 60
ML+INC VNG P+KAFVDSGAQ TIMS CAERC IMRL+D RWAGVAKGVG QRIIGR+
Sbjct: 24 MLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRV 83
Query: 61 HMVQVVIEKDFLTTSLSILEEQPXXXXXXXXXXRRHQCCIDLKRNVLRIGTTGTETRFLS 120
H+ Q+ IE DFL S SILE+QP RRHQC IDLK+NVL IGTTGT+T FL
Sbjct: 84 HLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYFLP 143
Query: 121 ESELP 125
E ELP
Sbjct: 144 EGELP 148
>pdb|2I1A|A Chain A, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|B Chain B, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|C Chain C, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|D Chain D, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
Length = 148
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 1 MLFINCCVNGVPVKAFVDSGAQTTIMSAECAERCAIMRLIDTRWAGVAKGVGIQRIIGRI 60
ML+IN +N PVKAFVD+GAQTTIMS A++ + R+ID R+ G A+GVG +IIGRI
Sbjct: 26 MLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGKIIGRI 85
Query: 61 HMVQVVIEKDFLTTSLSILEEQPXXXXXXXXXXRRHQCCIDLKRNVLRIGTTGTETRFLS 120
H QV IE ++ S ++L+ +RH C+DLK NVLRI ET FLS
Sbjct: 86 HQAQVKIETQYIPCSFTVLDTD-IDVLIGLDMLKRHLACVDLKENVLRIAE--VETSFLS 142
Query: 121 ESELP 125
E+E+P
Sbjct: 143 EAEIP 147
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 8 VNGVPVKAFVDSGAQTTIMSAECAERCAIMRLIDTRWAGVAKGVGIQRII 57
VN P D G I ++ +++ A M L+D +A + GV R+I
Sbjct: 688 VNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLI 737
>pdb|5FIV|A Chain A, Structural Studies Of Hiv And Fiv Proteases Complexed
With An Efficient Inhibitor Of Fiv Pr
Length = 113
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 8 VNGVPVKAFVDSGAQTTIMS 27
VNG P+K +D+GA TI++
Sbjct: 17 VNGYPIKFLLDTGADITILN 36
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 8 VNGVPVKAFVDSGAQTTIMSAECAERCAIMRLIDTRWAGVAKGVGIQRII 57
VN P D G I ++ +++ A M L+D +A + GV R+I
Sbjct: 694 VNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLI 743
>pdb|1FIV|A Chain A, Structure Of An Inhibitor Complex Of Proteinase From
Feline Immunodeficiency Virus
pdb|1B11|A Chain A, Structure Of Feline Immunodeficiency Virus Protease
Complexed With Tl- 3-093
pdb|4FIV|A Chain A, Fiv Protease Complexed With An Inhibitor Lp-130
Length = 113
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 8 VNGVPVKAFVDSGAQTTIMS 27
VNG P+K +D+GA TI++
Sbjct: 17 VNGYPIKFLLDTGADITILN 36
>pdb|6FIV|A Chain A, Structural Studies Of Hiv And Fiv Proteases Complexed
With An Efficient Inhibitor Of Fiv Pr
Length = 113
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 8 VNGVPVKAFVDSGAQTTIMS 27
VNG P+K +D+GA TI++
Sbjct: 17 VNGYPIKFLLDTGADITILN 36
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 8 VNGVPVKAFVDSGAQTTIMSAECAERCAIMRLIDTRWAGVAKGVGIQRII 57
VN P D G I ++ A+ A M L+D +A + GV R+I
Sbjct: 729 VNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLI 778
>pdb|2HAH|A Chain A, The Structure Of Fiv 12s Protease In Complex With Tl-3
Length = 116
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 8 VNGVPVKAFVDSGAQTTIMS 27
VNG P+K +D+GA T+++
Sbjct: 20 VNGYPIKFLLDTGADITVLN 39
>pdb|3OGP|A Chain A, Crystal Structure Of 6s-98s Fiv Protease With Darunavir
Bound
pdb|3OGP|B Chain B, Crystal Structure Of 6s-98s Fiv Protease With Darunavir
Bound
pdb|3OGQ|A Chain A, Crystal Structure Of 6s-98s Fiv Protease With Lopinavir
Bound
pdb|3OGQ|B Chain B, Crystal Structure Of 6s-98s Fiv Protease With Lopinavir
Bound
Length = 116
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 8 VNGVPVKAFVDSGAQTTIMS 27
VNG P+K +D+GA T+++
Sbjct: 20 VNGYPIKFLLDTGADITVLN 39
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 8 VNGVPVKAFVDSGAQTTIMSAECAERCAIMRLIDTRWAGVAKGVGIQRII 57
VN P D G I ++ +++ A M L+D +A + GV R+I
Sbjct: 724 VNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLI 773
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,288,389
Number of Sequences: 62578
Number of extensions: 97170
Number of successful extensions: 223
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 14
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)