RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy18197
         (144 letters)



>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural
           genomics consortiu retropepsin-like domain, protein
           turnover, hydrolase; 1.70A {Homo sapiens}
          Length = 148

 Score =  147 bits (371), Expect = 1e-46
 Identities = 97/125 (77%), Positives = 106/125 (84%)

Query: 1   MLFINCCVNGVPVKAFVDSGAQTTIMSAECAERCAIMRLIDTRWAGVAKGVGIQRIIGRI 60
           ML+INC VNG P+KAFVDSGAQ TIMS  CAERC IMRL+D RWAGVAKGVG QRIIGR+
Sbjct: 24  MLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRV 83

Query: 61  HMVQVVIEKDFLTTSLSILEEQPMDMLLGLDMLRRHQCCIDLKRNVLRIGTTGTETRFLS 120
           H+ Q+ IE DFL  S SILE+QPMDMLLGLDMLRRHQC IDLK+NVL IGTTGT+T FL 
Sbjct: 84  HLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYFLP 143

Query: 121 ESELP 125
           E ELP
Sbjct: 144 EGELP 148


>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer,
           retroviral protease domain, protein turnover; HET: DNA;
           2.30A {Saccharomyces cerevisiae}
          Length = 148

 Score =  144 bits (365), Expect = 1e-45
 Identities = 68/125 (54%), Positives = 90/125 (72%), Gaps = 3/125 (2%)

Query: 1   MLFINCCVNGVPVKAFVDSGAQTTIMSAECAERCAIMRLIDTRWAGVAKGVGIQRIIGRI 60
           ML+IN  +N  PVKAFVD+GAQTTIMS   A++  + R+ID R+ G A+GVG  +IIGRI
Sbjct: 26  MLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGKIIGRI 85

Query: 61  HMVQVVIEKDFLTTSLSILEEQPMDMLLGLDMLRRHQCCIDLKRNVLRIGTTGTETRFLS 120
           H  QV IE  ++  S ++L +  +D+L+GLDML+RH  C+DLK NVLRI     ET FLS
Sbjct: 86  HQAQVKIETQYIPCSFTVL-DTDIDVLIGLDMLKRHLACVDLKENVLRIA--EVETSFLS 142

Query: 121 ESELP 125
           E+E+P
Sbjct: 143 EAEIP 147


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.3 bits (75), Expect = 0.020
 Identities = 13/89 (14%), Positives = 21/89 (23%), Gaps = 19/89 (21%)

Query: 33  RCAIMRLIDTRWAGVAKGVGIQRIIGRIHMVQVVIEKDFLTT-SLSILE---EQPMDMLL 88
            C I  L+ TR+  V   +         H+               S+L    +     L 
Sbjct: 265 SCKI--LLTTRFKQVTDFLSAAT---TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL- 318

Query: 89  GLDMLRRHQCCIDLKRNVLRIGTTGTETR 117
                   +       N  R+       R
Sbjct: 319 ------PREVL---TTNPRRLSIIAESIR 338


>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE,
           unknown function, cytoplasm, NADP, oxidoreductase; 1.90A
           {Bacillus subtilis}
          Length = 307

 Score = 26.0 bits (58), Expect = 4.5
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%)

Query: 2   LFINCCVN------GVPVKAFVDSGAQTTIMSAECAERCAIMR 38
           L +N C+N       V     + + A    M     E C I++
Sbjct: 182 LIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILK 224


>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785,
          legionella pneumophila pneumophila STR. philadelphia 1;
          1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
          Length = 146

 Score = 25.4 bits (55), Expect = 5.9
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 10 GVPVKAFVDSGAQTTIMSAE 29
           + + A +D+GA++  + A 
Sbjct: 17 NLTLSAKLDTGAKSASLHAV 36


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,200,468
Number of extensions: 125468
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 11
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.0 bits)