RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18197
         (144 letters)



>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia
          virus [TaxId: 11665]}
          Length = 104

 Score = 27.0 bits (60), Expect = 0.40
 Identities = 6/25 (24%), Positives = 14/25 (56%)

Query: 3  FINCCVNGVPVKAFVDSGAQTTIMS 27
               +N  P+   +D+GA T++++
Sbjct: 10 TTIVLINDTPLNVLLDTGADTSVLT 34


>d2pmaa1 b.50.1.3 (A:26-166) Uncharacterized protein LPG0085
           {Legionella pneumophila [TaxId: 446]}
          Length = 141

 Score = 26.5 bits (58), Expect = 1.0
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 28/126 (22%)

Query: 10  GVPVKAFVDSGAQTTIMSAECAER-------------------------CAIMRLIDTRW 44
            + + A +D+GA++  + A                                    I  R 
Sbjct: 14  NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRS 73

Query: 45  AGVAKGVGIQRIIGRIHM-VQVVIEKDFLTTSLSILEEQPMD--MLLGLDMLRRHQCCID 101
           +    G+     I R  + + + +     T  +++   +     +LLG D +      +D
Sbjct: 74  SETNPGLLRTTPIKRPVVLLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVD 133

Query: 102 LKRNVL 107
                 
Sbjct: 134 PALTFT 139


>d2rspa_ b.50.1.1 (A:) Rous sarcoma virus protease {Rous sarcoma
          virus, strain pr-C [TaxId: 11886]}
          Length = 124

 Score = 25.1 bits (55), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 8  VNGVPVKAFVDSGAQTTIMS 27
             V + A +DSGA  TI+S
Sbjct: 27 QRSVYITALLDSGADITIIS 46


>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln)
           amidotransferase subunit E, GatE {Pyrococcus abyssi
           [TaxId: 29292]}
          Length = 321

 Score = 25.5 bits (55), Expect = 2.7
 Identities = 8/74 (10%), Positives = 24/74 (32%)

Query: 1   MLFINCCVNGVPVKAFVDSGAQTTIMSAECAERCAIMRLIDTRWAGVAKGVGIQRIIGRI 60
               +       VK  + +  Q   +S +   R  I  + +     +     ++R +  +
Sbjct: 203 KFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKGVQELDMIPIIIEREVERQLNLL 262

Query: 61  HMVQVVIEKDFLTT 74
            +   + ++    T
Sbjct: 263 KIRDELRKRGPEET 276


>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 453

 Score = 24.9 bits (54), Expect = 4.6
 Identities = 6/26 (23%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 59  RIHMVQVVIEKDFLTTS-LSILEEQP 83
             ++ +VV+++  +    L++LE++P
Sbjct: 415 SEYVYEVVVDRKHVPEEVLAVLEQEP 440


>d1nsoa_ b.50.1.1 (A:) Mason-Pfizer monkey virus protease {Simian
          retrovirus 1, SRV-1 [TaxId: 11942]}
          Length = 107

 Score = 24.0 bits (52), Expect = 5.3
 Identities = 6/63 (9%), Positives = 14/63 (22%), Gaps = 13/63 (20%)

Query: 4  INCCVNGVPVKAFVDSGAQTTIMSAECAERCAIMRLIDTRWAGVAKGVGIQRIIGRIHMV 63
          +   ++       +++GA  TI+                 W            +  I   
Sbjct: 12 LTLWLDDKMFTGLINTGADVTIIK-------------LEDWPPNWPITDTLTNLRGIGQS 58

Query: 64 QVV 66
             
Sbjct: 59 NNP 61


>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease
           {Feline immunodeficiency virus [TaxId: 11673]}
          Length = 113

 Score = 23.9 bits (52), Expect = 5.9
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 20/97 (20%)

Query: 8   VNGVPVKAFVDSGAQTTIMSAECAERCAIMRLIDTRWAGVAKGVGIQRIIGRIHMV---Q 64
           VNG P+K  +D+GA  TI++    +          + +       +  + G         
Sbjct: 17  VNGYPIKFLLDTGADITILNRRDFQV---------KNSIENGRQNMIGVGGGKRGTNYIN 67

Query: 65  VVIEKD-------FLTTSLSILEEQPMDM-LLGLDML 93
           V +E          +  ++ +LE+  +   LLG D +
Sbjct: 68  VHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNM 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 527,352
Number of extensions: 22741
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 9
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.8 bits)