BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy18199
         (70 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F35|D Chain D, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
 pdb|4F35|B Chain B, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
 pdb|4F35|A Chain A, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
 pdb|4F35|C Chain C, Crystal Structure Of A Bacterial DicarboxylateSODIUM
           SYMPORTER
          Length = 449

 Score = 30.8 bits (68), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 33  ILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64
           +L+ +   ++IGG A++VG PPNAI A   G+
Sbjct: 168 VLLGVAYSASIGGIATLVGSPPNAIAAAEVGL 199


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,886,233
Number of Sequences: 62578
Number of extensions: 53741
Number of successful extensions: 146
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 1
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)