BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18199
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q62052|P_MOUSE P protein OS=Mus musculus GN=Oca2 PE=1 SV=1
Length = 833
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAII 58
VTT+LL TPVTIRLCEV L+P +L+A +IF+NIGG A+ +GDPPN II
Sbjct: 438 VTTMLLFTPVTIRLCEVLNLDPRQVLIAEVIFTNIGGAATAIGDPPNVII 487
>sp|Q04671|P_HUMAN P protein OS=Homo sapiens GN=OCA2 PE=1 SV=2
Length = 838
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAII 58
VTT+LL TPVTIRLCEV L+P +L+A +IF+NIGG A+ +GDPPN II
Sbjct: 443 VTTMLLFTPVTIRLCEVLNLDPRQVLIAEVIFTNIGGAATAIGDPPNVII 492
>sp|Q8MIQ9|P_PIG P protein OS=Sus scrofa GN=Oca2 PE=2 SV=3
Length = 845
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 40/50 (80%)
Query: 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAII 58
VTT LL TPVTIRLCEV L+P +L+A +IF+NIGG A+ +GDPPN II
Sbjct: 450 VTTALLFTPVTIRLCEVLNLDPRQVLIAEVIFTNIGGAATAIGDPPNVII 499
>sp|P46838|AG45_MYCLE 46 kDa membrane protein OS=Mycobacterium leprae (strain TN) GN=ag45
PE=3 SV=2
Length = 429
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 40/56 (71%)
Query: 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64
VTT+LL+ PVT+ +CE +N +P LMA + SNIGG A++VGDPPN IIA G
Sbjct: 113 VTTVLLIAPVTLLVCERLTINAAPFLMAEVFASNIGGAATLVGDPPNIIIASRAGF 168
>sp|O07187|Y2685_MYCTU Uncharacterized transporter Rv2685/MT2759 OS=Mycobacterium
tuberculosis GN=Rv2685 PE=3 SV=1
Length = 428
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 41/56 (73%)
Query: 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64
VTT+LL+ PVT+ +C+ +N +P L+A + SN+GG A++VGDPPN IIA G+
Sbjct: 113 VTTVLLIAPVTLLVCDRLGVNSTPFLVAEVFASNVGGAATLVGDPPNIIIASRAGL 168
>sp|P0A607|Y2703_MYCBO Uncharacterized transporter Mb2703 OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2703 PE=3 SV=1
Length = 429
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%)
Query: 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64
VTT+LL+ PVT+ +C+ +N + LMA + SNIGG A++VGDPPN I+A G+
Sbjct: 113 VTTVLLIAPVTLLVCDRLNINTTSFLMAEVFASNIGGAATLVGDPPNIIVASRAGL 168
>sp|P0A606|Y2684_MYCTU Uncharacterized transporter Rv2684/MT2758 OS=Mycobacterium
tuberculosis GN=Rv2684 PE=3 SV=1
Length = 429
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%)
Query: 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64
VTT+LL+ PVT+ +C+ +N + LMA + SNIGG A++VGDPPN I+A G+
Sbjct: 113 VTTVLLIAPVTLLVCDRLNINTTSFLMAEVFASNIGGAATLVGDPPNIIVASRAGL 168
>sp|Q54GU0|ARSB_DICDI Putative transporter arsB OS=Dictyostelium discoideum GN=arsB PE=2
SV=1
Length = 563
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 15 MTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64
+TP+ I C+ L P LMA+ +NIG A VG+P N IIA G+
Sbjct: 161 LTPIVISACKSTNLTFFPFLMAIATSANIGSSALPVGNPQNMIIATAGGL 210
>sp|P74635|Y753_SYNY3 Uncharacterized transporter slr0753 OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=slr0753 PE=3 SV=1
Length = 449
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 10 TTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAII 58
TT++L+ P+ L + ++ PIL+ M+ +N G ++VGDP I+
Sbjct: 117 TTVMLLAPLIPPLAQEIGVDFVPILILMVFVANSAGLLTLVGDPATFIV 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.141 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,938,516
Number of Sequences: 539616
Number of extensions: 785344
Number of successful extensions: 2841
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2823
Number of HSP's gapped (non-prelim): 18
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)