Query psy18199
Match_columns 70
No_of_seqs 114 out of 1034
Neff 6.2
Searched_HMMs 46136
Date Sat Aug 17 01:20:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00136 silicon transporter; 99.5 6.5E-14 1.4E-18 104.4 5.6 61 5-65 116-176 (482)
2 TIGR00775 NhaD Na+/H+ antiport 99.4 1.3E-13 2.8E-18 101.3 3.8 59 5-66 113-173 (420)
3 PF03600 CitMHS: Citrate trans 99.4 2.7E-13 5.9E-18 95.4 5.0 62 5-66 106-167 (351)
4 PLN00137 NHAD transporter fami 99.3 9.4E-13 2E-17 96.9 4.0 59 5-65 117-176 (424)
5 COG1055 ArsB Na+/H+ antiporter 99.3 6.5E-13 1.4E-17 98.2 3.0 61 5-65 110-170 (424)
6 TIGR00774 NhaB Na+/H+ antiport 99.3 3.4E-12 7.5E-17 96.0 4.9 61 5-65 145-236 (515)
7 cd01117 YbiR_permease Putative 99.2 1.4E-11 3.1E-16 87.6 5.9 61 5-65 94-154 (384)
8 cd01118 ArsB_permease Anion pe 99.2 1.7E-11 3.6E-16 88.3 5.6 61 5-65 106-169 (416)
9 PRK09547 nhaB sodium/proton an 99.2 2.9E-11 6.2E-16 91.4 4.0 61 5-65 145-237 (513)
10 KOG2639|consensus 99.1 5.6E-13 1.2E-17 101.6 -6.6 61 5-65 286-346 (685)
11 PRK15445 arsenical pump membra 99.1 1.3E-10 2.9E-15 84.3 5.5 61 5-65 107-170 (427)
12 TIGR00935 2a45 arsenical pump 99.1 1.1E-10 2.4E-15 84.4 4.5 58 5-62 108-165 (429)
13 cd01116 P_permease Permease P 99.0 5.4E-10 1.2E-14 80.2 5.1 57 5-61 324-380 (413)
14 cd01116 P_permease Permease P 99.0 7.9E-10 1.7E-14 79.3 5.4 62 5-66 101-162 (413)
15 cd01115 SLC13_permease Permeas 99.0 1.3E-09 2.9E-14 77.1 5.4 57 5-61 100-156 (382)
16 TIGR00785 dass anion transport 99.0 9.3E-10 2E-14 79.8 4.7 59 4-62 117-184 (444)
17 PF02040 ArsB: Arsenical pump 98.9 8.6E-10 1.9E-14 81.7 4.4 62 4-65 105-169 (423)
18 cd00625 ArsB_NhaD_permease Ani 98.9 1.8E-09 3.8E-14 76.7 3.7 61 5-65 92-153 (396)
19 TIGR00785 dass anion transport 98.9 4.3E-09 9.3E-14 76.4 5.7 61 5-65 357-417 (444)
20 COG0471 CitT Di- and tricarbox 98.9 3.7E-09 8E-14 78.3 5.3 61 5-66 370-430 (461)
21 cd01115 SLC13_permease Permeas 98.8 7.8E-09 1.7E-13 73.2 5.6 60 5-65 296-355 (382)
22 PF00939 Na_sulph_symp: Sodium 98.7 2.6E-08 5.6E-13 73.3 4.8 62 4-65 376-438 (471)
23 KOG1281|consensus 98.6 1.1E-08 2.5E-13 78.3 1.7 59 5-64 487-545 (586)
24 TIGR00935 2a45 arsenical pump 98.5 1.4E-07 3E-12 68.3 3.3 57 6-65 335-396 (429)
25 PRK15445 arsenical pump membra 98.4 8.9E-08 1.9E-12 69.6 1.9 60 5-65 333-395 (427)
26 COG0471 CitT Di- and tricarbox 98.3 5.1E-07 1.1E-11 67.0 3.6 60 4-63 137-201 (461)
27 cd01117 YbiR_permease Putative 98.2 1E-06 2.2E-11 62.8 2.0 51 5-62 303-353 (384)
28 PRK12489 anaerobic C4-dicarbox 98.1 4.4E-06 9.5E-11 62.6 5.1 53 5-57 101-154 (443)
29 cd01118 ArsB_permease Anion pe 98.1 1.4E-06 3.1E-11 62.8 2.1 51 5-60 332-382 (416)
30 PLN00136 silicon transporter; 98.1 3.5E-06 7.5E-11 63.3 3.6 57 5-61 385-442 (482)
31 PF00939 Na_sulph_symp: Sodium 97.9 1.2E-05 2.5E-10 59.3 3.9 57 6-62 138-204 (471)
32 PRK09412 anaerobic C4-dicarbox 97.9 1.7E-05 3.7E-10 58.8 4.7 57 6-62 103-159 (433)
33 TIGR00770 Dcu anaerobic c4-dic 97.8 3.8E-05 8.2E-10 57.1 5.5 55 6-60 99-153 (430)
34 KOG1281|consensus 97.8 2E-05 4.3E-10 60.9 3.7 61 5-65 144-268 (586)
35 TIGR00784 citMHS citrate trans 97.8 3.9E-05 8.5E-10 56.5 4.4 60 5-66 341-400 (431)
36 TIGR00784 citMHS citrate trans 97.7 7.1E-05 1.5E-09 55.2 4.7 59 5-65 111-169 (431)
37 TIGR00774 NhaB Na+/H+ antiport 97.4 0.00015 3.2E-09 55.4 3.1 55 5-60 404-462 (515)
38 TIGR00786 dctM TRAP transporte 97.3 0.00056 1.2E-08 49.5 5.6 59 5-65 313-372 (405)
39 PRK09547 nhaB sodium/proton an 97.2 0.00027 5.9E-09 54.0 2.9 54 5-59 405-462 (513)
40 KOG2639|consensus 97.1 0.00034 7.3E-09 54.4 2.2 65 5-69 585-654 (685)
41 COG1055 ArsB Na+/H+ antiporter 96.9 0.0006 1.3E-08 50.9 2.1 56 5-61 334-389 (424)
42 PLN00137 NHAD transporter fami 96.9 0.00071 1.5E-08 50.2 2.4 53 5-61 338-391 (424)
43 cd00625 ArsB_NhaD_permease Ani 96.7 0.0021 4.7E-08 45.6 3.7 52 5-61 313-364 (396)
44 TIGR00775 NhaD Na+/H+ antiport 96.5 0.001 2.2E-08 49.2 1.0 53 5-63 333-385 (420)
45 PRK10654 dcuC C4-dicarboxylate 96.3 0.012 2.5E-07 44.4 5.7 57 7-64 367-423 (455)
46 PF07158 MatC_N: Dicarboxylate 95.6 0.023 4.9E-07 37.4 4.0 38 8-45 112-149 (149)
47 TIGR00771 DcuC c4-dicarboxylat 95.3 0.043 9.4E-07 40.3 5.1 58 5-64 311-370 (388)
48 PF03606 DcuC: C4-dicarboxylat 92.6 0.29 6.3E-06 36.7 4.9 60 6-66 379-438 (465)
49 PF03553 Na_H_antiporter: Na+/ 92.3 0.27 5.8E-06 34.0 4.2 50 7-56 217-266 (303)
50 PRK09804 putative cryptic C4-d 92.3 0.34 7.4E-06 36.9 5.0 59 7-66 370-428 (455)
51 PF06450 NhaB: Bacterial Na+/H 92.1 0.077 1.7E-06 40.4 1.3 34 31-64 203-236 (515)
52 TIGR00786 dctM TRAP transporte 90.5 0.65 1.4E-05 33.7 4.8 45 7-56 94-138 (405)
53 PRK15060 L-dehydroascorbate tr 90.2 0.96 2.1E-05 34.0 5.5 48 5-52 329-376 (425)
54 PRK09821 putative transporter; 90.0 1.1 2.3E-05 34.1 5.6 54 9-64 119-173 (454)
55 COG3067 NhaB Na+/H+ antiporter 89.8 0.16 3.4E-06 38.3 1.1 34 31-64 203-236 (516)
56 PRK14984 high-affinity glucona 89.6 1.4 3E-05 33.3 6.0 55 9-64 115-169 (438)
57 COG1593 DctQ TRAP-type C4-dica 89.3 0.81 1.8E-05 34.2 4.5 53 5-59 283-335 (379)
58 PRK09921 permease DsdX; Provis 88.9 1.4 3E-05 33.2 5.6 56 9-65 119-174 (445)
59 TIGR00791 gntP gluconate trans 88.7 1.7 3.6E-05 32.2 5.8 54 11-65 117-170 (440)
60 COG2610 GntT H+/gluconate symp 88.1 1.8 4E-05 32.8 5.8 56 9-65 116-171 (442)
61 PF03606 DcuC: C4-dicarboxylat 86.1 2.5 5.3E-05 31.8 5.5 52 13-65 140-192 (465)
62 PF02447 GntP_permease: GntP f 85.4 3.2 7E-05 31.3 5.9 56 9-65 115-170 (441)
63 PF02652 Lactate_perm: L-lacta 85.2 2.4 5.2E-05 32.7 5.1 50 6-59 438-487 (522)
64 PRK10472 low affinity gluconat 84.8 3.1 6.8E-05 31.5 5.5 55 9-64 119-173 (445)
65 PF03600 CitMHS: Citrate trans 82.7 1.7 3.8E-05 30.5 3.3 36 6-41 311-351 (351)
66 PRK10034 fructuronate transpor 81.7 4.8 0.0001 30.5 5.4 54 9-63 118-171 (447)
67 TIGR00795 lctP L-lactate trans 79.3 5 0.00011 31.0 4.9 50 6-59 444-493 (530)
68 PF03605 DcuA_DcuB: Anaerobic 78.5 3.2 6.9E-05 31.0 3.5 45 12-56 105-149 (364)
69 PF06808 DctM: DctM-like trans 78.2 6.6 0.00014 29.0 5.2 46 5-51 329-375 (416)
70 PRK10420 L-lactate permease; P 77.9 5.6 0.00012 30.9 4.9 50 6-59 458-507 (551)
71 TIGR00931 antiport_nhaC Na+/H+ 76.5 9.9 0.00021 28.7 5.8 53 7-59 122-174 (454)
72 PRK09695 glycolate transporter 75.0 7.5 0.00016 30.3 4.9 50 6-59 466-515 (560)
73 TIGR02123 TRAP_fused TRAP tran 73.1 11 0.00025 29.6 5.5 43 5-48 445-487 (613)
74 TIGR00529 AF0261 converved hyp 69.8 18 0.0004 26.7 5.7 54 9-63 108-161 (387)
75 PRK11588 hypothetical protein; 67.7 17 0.00038 28.2 5.4 51 13-64 172-223 (506)
76 PRK11588 hypothetical protein; 66.3 15 0.00032 28.5 4.8 45 6-50 416-460 (506)
77 PF02690 Na_Pi_cotrans: Na+/Pi 61.6 16 0.00034 23.2 3.6 39 7-50 48-86 (142)
78 TIGR00366 conserved hypothetic 61.1 21 0.00045 27.3 4.7 44 7-50 369-412 (438)
79 PF07854 DUF1646: Protein of u 58.0 12 0.00026 27.9 2.8 45 18-62 125-172 (347)
80 PF02040 ArsB: Arsenical pump 55.3 7.6 0.00016 29.2 1.5 29 30-58 356-384 (423)
81 COG2704 DcuB Anaerobic C4-dica 52.4 14 0.0003 28.2 2.5 39 15-53 112-150 (436)
82 COG1288 Predicted membrane pro 52.2 38 0.00082 26.3 4.8 53 12-65 158-211 (481)
83 COG2851 CitM H+/citrate sympor 45.7 22 0.00047 27.2 2.6 38 4-45 342-379 (433)
84 COG1620 LldP L-lactate permeas 44.9 42 0.00091 26.3 4.1 49 7-59 432-480 (522)
85 COG1757 NhaC Na+/H+ antiporter 43.5 11 0.00023 28.7 0.8 52 7-58 379-430 (485)
86 COG3069 DcuC C4-dicarboxylate 42.2 25 0.00054 27.0 2.5 42 12-53 371-412 (451)
87 TIGR00704 NaPi_cotrn_rel Na/Pi 41.1 43 0.00093 24.2 3.5 39 7-50 186-224 (307)
88 PF06946 Phage_holin_5: Phage 38.4 82 0.0018 19.3 3.9 46 11-56 13-60 (93)
89 PF01832 Glucosaminidase: Mann 36.1 1E+02 0.0022 18.7 4.4 39 15-55 1-39 (136)
90 PRK09412 anaerobic C4-dicarbox 34.8 62 0.0014 24.2 3.6 32 17-50 352-383 (433)
91 TIGR00819 ydaH p-Aminobenzoyl- 34.8 1.1E+02 0.0023 24.0 4.9 45 6-50 405-449 (513)
92 COG2056 Predicted permease [Ge 32.7 90 0.002 24.0 4.1 41 14-54 362-402 (444)
93 PF13792 Sulfate_tra_GLY: Sulf 30.3 1.2E+02 0.0026 17.7 5.0 48 8-55 23-74 (84)
94 TIGR00819 ydaH p-Aminobenzoyl- 29.5 1.6E+02 0.0036 23.0 5.2 38 9-47 138-175 (513)
95 COG4664 FcbT3 TRAP-type mannit 29.0 1.2E+02 0.0027 23.2 4.3 29 11-39 354-382 (447)
96 TIGR00771 DcuC c4-dicarboxylat 28.6 1.4E+02 0.003 22.0 4.5 47 7-55 78-125 (388)
97 TIGR00931 antiport_nhaC Na+/H+ 28.5 80 0.0017 23.9 3.3 46 5-50 363-408 (454)
98 PRK11339 abgT putative aminobe 27.3 1.8E+02 0.0039 22.7 5.1 35 9-43 142-176 (508)
99 PF06808 DctM: DctM-like trans 23.3 1.5E+02 0.0034 21.9 4.0 38 7-44 109-146 (416)
100 PF04583 Baculo_p74: Baculovir 23.0 1.2E+02 0.0026 21.7 3.2 15 56-70 121-135 (249)
101 PF07399 DUF1504: Protein of u 22.8 25 0.00053 27.0 -0.3 28 41-68 191-218 (438)
102 PF02667 SCFA_trans: Short cha 22.1 1E+02 0.0023 23.7 2.9 33 16-48 381-413 (453)
103 COG1757 NhaC Na+/H+ antiporter 21.8 2.3E+02 0.005 21.6 4.7 53 7-59 138-190 (485)
104 COG4980 GvpP Gas vesicle prote 21.6 79 0.0017 20.0 1.9 27 28-54 2-28 (115)
No 1
>PLN00136 silicon transporter; Provisional
Probab=99.47 E-value=6.5e-14 Score=104.41 Aligned_cols=61 Identities=30% Similarity=0.423 Sum_probs=58.2
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
|.+|++++++|.|+++++|++.|++|++++++++++||+||.+||+|+|+|+++.+.+|++
T Consensus 116 fl~N~~t~llm~Piv~~la~~~~~~p~~~ll~la~aAn~Gg~~TpiG~p~Nlii~~~~~i~ 176 (482)
T PLN00136 116 LFTNDTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATPIGNPQNLVIAFNSKIT 176 (482)
T ss_pred HhccHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhhccccchheeeCCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999977764
No 2
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family. These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate.
Probab=99.42 E-value=1.3e-13 Score=101.27 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=54.3
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHH--HHHHHhhhhhccccCCchhhhhhccCCCcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMA--MMIFSNIGGGASIVGDPPNAIIALHPGILE 66 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~--ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~~ 66 (70)
+.+||+|++++.|++..+|+ .+|.+++++ ++++||+||.+||+|||||+++++.+|++.
T Consensus 113 ~LdN~tt~ll~~Pv~l~i~~---~~~~~~ll~~~i~~AANiGG~~TpIGdP~Ni~i~~~~~i~f 173 (420)
T TIGR00775 113 ALDNLTSIIIIISILKRLVK---AREDRLLLGAICVIAVNAGGAWTPLGDVTTTMLWINGKIRF 173 (420)
T ss_pred HHhhHHHHHHHHHHHHHHhc---cCCccchHHhHHHHhcccccceeeCCCcchhHhHhcCCCCH
Confidence 56899999999999999995 778888888 999999999999999999999999888764
No 3
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.41 E-value=2.7e-13 Score=95.43 Aligned_cols=62 Identities=34% Similarity=0.550 Sum_probs=58.3
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGILE 66 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~~ 66 (70)
+.+|+++++++.|++..++|+.|++|+++++++++++|+||..||+|+|+|+++++..+++.
T Consensus 106 ~~~N~~~v~~~~Pi~~~~~~~~~i~~~~~l~~l~~~a~~gg~~t~iG~p~nl~i~~~~~~~~ 167 (351)
T PF03600_consen 106 FLDNTTVVLIMIPIVLSLARKLGIPPSPLLMPLAFAANIGGMLTPIGNPTNLIIANASGLPF 167 (351)
T ss_pred hhhcchHHHhhHHHHHHHHHHcCCChHHHHHHHHHHhccccccCcCCCcchhhhhhhccccc
Confidence 57899999999999999999999999999999999999999999999999999988777664
No 4
>PLN00137 NHAD transporter family protein; Provisional
Probab=99.33 E-value=9.4e-13 Score=96.88 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=53.2
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHH-HHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPI-LMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~l-ll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
+.+||+|+++|.|++.++|++. ++.++ ++.++++||+||.+||+|||||+++++.+|++
T Consensus 117 ~l~N~tt~l~~~p~~~~~~~~~--~~~~~~~~~~~~aaNiGg~~TpiGnp~NllI~~~~~ls 176 (424)
T PLN00137 117 ILDNLTTTIVMVSLLRKLVPPS--EYRKLLGAVVVVAANAGGAWTPIGDVTTTMLWIHGQIS 176 (424)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHhccccceeccCCCcCeeeehccCCCC
Confidence 5799999999999999999875 56666 78899999999999999999999999988876
No 5
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=99.33 E-value=6.5e-13 Score=98.25 Aligned_cols=61 Identities=44% Similarity=0.652 Sum_probs=58.9
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
|+.||+++++++|++++++|+.|.++.++++.+.++||+||..||+|||||+++.+..|++
T Consensus 110 ~l~N~tt~LlltPivl~~~~~~~~~~~p~l~~~~f~aN~gg~~t~iGdp~niii~~~~gis 170 (424)
T COG1055 110 FLDNDTTALLLTPIVLAVARALGVNPVPFLIAEVFIANIGGLATPVGDPPNIIIASAAGIS 170 (424)
T ss_pred HHcccceeehhhhHHHHHHHHcCCCccHHHHHHHHHHcccccccccCChHHHHHHHhcCCC
Confidence 5789999999999999999999999999999999999999999999999999999999865
No 6
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=99.29 E-value=3.4e-12 Score=96.01 Aligned_cols=61 Identities=23% Similarity=0.355 Sum_probs=54.9
Q ss_pred eccHHHHHHHHHHHHHHH------------HHHcCCCchH-------------------HHHHHHHHHhhhhhccccCCc
Q psy18199 5 NRTLVTTILLMTPVTIRL------------CEVCELNPSP-------------------ILMAMMIFSNIGGGASIVGDP 53 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~i------------a~~~~~~~~~-------------------lll~ia~aa~~Gg~~TpiG~p 53 (70)
|.||++++++++|+++++ +++.+.++.+ ++|..++++|+||.+||+|+|
T Consensus 145 FLsnttvtAvmIpVavgfy~~yh~~~s~~~~~~~d~~~d~~~~~~~~~~l~~fr~fl~~LLM~~aiaAnLGGvlTpIGnP 224 (515)
T TIGR00774 145 FLDALTVVAVVISVAVGFYGIYHKVASGNPIGDHDHTDDDTITELTRDDLENFRAFLRSLMMHAGVGTALGGVMTMVGEP 224 (515)
T ss_pred HHHhHHHHHHHHHHHHHHhHHhhhhhccCchhhcCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc
Confidence 679999999999999999 8777666544 999999999999999999999
Q ss_pred hhhhhhccCCCc
Q psy18199 54 PNAIIALHPGIL 65 (70)
Q Consensus 54 ~Nli~~~~~~~~ 65 (70)
||+++++..+.+
T Consensus 225 QNLiias~~g~~ 236 (515)
T TIGR00774 225 QNLIIADQAGWL 236 (515)
T ss_pred hHHHHHHHhCCC
Confidence 999999988854
No 7
>cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.
Probab=99.24 E-value=1.4e-11 Score=87.58 Aligned_cols=61 Identities=38% Similarity=0.596 Sum_probs=57.1
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
+.+|+++++++.|++..+|++.|.+++++++++++++|+||..||+|+|+|+++++..+++
T Consensus 94 ~~~n~~~~~~~~Pi~~~l~~~~~~~~~~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~~~i~ 154 (384)
T cd01117 94 LLTNDTACLVFTPIVLELARVAGLPPIPLLLALATAANIGSAATPIGNPQNLLIASESGIS 154 (384)
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHcccccccCCCchhhhhhcCCCCC
Confidence 4589999999999999999999999999999999999999999999999999998876654
No 8
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=99.23 E-value=1.7e-11 Score=88.30 Aligned_cols=61 Identities=21% Similarity=0.154 Sum_probs=56.9
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNP---SPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~---~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
|.||+++++++.|++.++|++.|.+| .++++++++++|.||..||+|+|+|+++++.++++
T Consensus 106 ~~sn~a~~~~~~Pi~~~i~~~~g~~~~~~~~~l~~~~~~a~~g~~~tpig~~~n~i~~~~~~i~ 169 (416)
T cd01118 106 FFANDGTALILTPIVIALLRALGAKKNRTLPFLYACAFIADAASLPLPISNLVNIVTAGYFGIG 169 (416)
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHcccccccccCCchHHHhHhccCCC
Confidence 56999999999999999999999999 88999999999999999999999999998876654
No 9
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=99.16 E-value=2.9e-11 Score=91.41 Aligned_cols=61 Identities=25% Similarity=0.386 Sum_probs=50.8
Q ss_pred eccHHHHHHHHHHHHHH-------------------HHHHcCCC---------c----hHHHHHHHHHHhhhhhccccCC
Q psy18199 5 NRTLVTTILLMTPVTIR-------------------LCEVCELN---------P----SPILMAMMIFSNIGGGASIVGD 52 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~-------------------ia~~~~~~---------~----~~lll~ia~aa~~Gg~~TpiG~ 52 (70)
|.+|++++++++|++++ +|++.+++ | +.++++.++++|+||.+|++|+
T Consensus 145 FLdN~Tvvav~iPV~l~~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~~~~~~p~pfL~~Llmpla~asnlGGv~TLIG~ 224 (513)
T PRK09547 145 FLDALTVIAVVISVAVGFYGIYHRVASGKGFSEDHDLTDDSHIDELYREDLEQFRAFLRSLMMHAGVGTALGGVMTMVGE 224 (513)
T ss_pred HHhhHHHHHhHHHHHHHHhhhhHHHHhccccccccccccccccchhhhhhhcccchHHHHHHHHHHHHHHhhhheeccCC
Confidence 67999999999999995 45566666 3 4566777779999999999999
Q ss_pred chhhhhhccCCCc
Q psy18199 53 PPNAIIALHPGIL 65 (70)
Q Consensus 53 p~Nli~~~~~~~~ 65 (70)
|||+++.+..|++
T Consensus 225 PqNLiIas~~g~~ 237 (513)
T PRK09547 225 PQNLIIAKQAGWH 237 (513)
T ss_pred cHHHHHHHhcCcc
Confidence 9999999876664
No 10
>KOG2639|consensus
Probab=99.12 E-value=5.6e-13 Score=101.63 Aligned_cols=61 Identities=56% Similarity=0.946 Sum_probs=56.6
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
++.|++++++|.|+++++|+.++++|.+++++++..||+||.+||+|+|||+++.....+.
T Consensus 286 ~ldN~TtvLLltpv~IRLcevm~L~p~pvLi~~vi~aNIGga~TPIGdPpNvIIatns~i~ 346 (685)
T KOG2639|consen 286 FLDNVTTVLLLTPVVIRLCEVMNLDPHPVLIAVVIYANIGGAATPIGDPPNVIIATNSEIP 346 (685)
T ss_pred HhcCCeEEEEecHHHHHHHHHhcCCCCceEEEEEEecccccccCcCCCCCcEEEEecceec
Confidence 5789999999999999999999999999999999999999999999999999987765543
No 11
>PRK15445 arsenical pump membrane protein; Provisional
Probab=99.11 E-value=1.3e-10 Score=84.32 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=55.0
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNP---SPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~---~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
+.||++++++|.|++..+|++.|.+| .+++++++++++.|+..|++|+|+|++..+..+++
T Consensus 107 ~~sn~~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~~a~~~~~~~~ig~~~N~i~~~~~~i~ 170 (427)
T PRK15445 107 LFANDGAALILTPIVLAMLLALGFSKKATLAFVMAAGFIADTASLPLVVSNLVNIVSADYFGIG 170 (427)
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCCCcccchHHHHHHHHHhcccccccccCCchHhhhhccCCCC
Confidence 46999999999999999999999999 57889999999999999999999999987765554
No 12
>TIGR00935 2a45 arsenical pump membrane protein.
Probab=99.09 E-value=1.1e-10 Score=84.43 Aligned_cols=58 Identities=26% Similarity=0.297 Sum_probs=54.1
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccC
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHP 62 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~ 62 (70)
+.+|+++++++.|++..+|++.|.+|++.++++++++++||.+||+|+|+|++..+..
T Consensus 108 ~~~n~~~~~i~~Pi~~~l~~~~~~~~~~~~~~~~~~a~~gg~~t~iG~~~n~i~~~~~ 165 (429)
T TIGR00935 108 FFANDGAALILTPIVIAMCEVLGFNPRTILAFVVAAGFIADTASLPLIVSNLVNIVSA 165 (429)
T ss_pred HHccchhhhhHHHHHHHHHHHhCCCCcchHHHHHHHHHHhhHHhcCCCCchhhhhhcc
Confidence 4689999999999999999999999999999999999999999999999999987643
No 13
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=99.00 E-value=5.4e-10 Score=80.17 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=54.3
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALH 61 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~ 61 (70)
|.||+++++++.|++..+|++.|.++.++.+++++++|+|+..||+|+|+|++..+.
T Consensus 324 f~sn~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~a~~g~~~tp~gs~~n~i~~~~ 380 (413)
T cd01116 324 FIDNIPVTATMIPIVKDLASQLGIPLLPLWWALALGACLGGNGTLIGASANVVAAGI 380 (413)
T ss_pred HHccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccccccchHHHHHHHH
Confidence 569999999999999999999999999999999999999999999999999998754
No 14
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=98.99 E-value=7.9e-10 Score=79.32 Aligned_cols=62 Identities=53% Similarity=0.873 Sum_probs=57.0
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGILE 66 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~~ 66 (70)
+.||+++++++.|++..+|++.|.+|..+++.+.+++++|+..||+|+|+|+++.+..+++.
T Consensus 101 ~~s~~~~~~i~~pi~~~i~~~~g~~~~~~~~~~~~~a~~g~~~tp~g~~~n~~~~~~~~i~~ 162 (413)
T cd01116 101 FLDNVTTVLLMVPVTIRLCEVLGLNPVPVLISEVIAANIGGAATLIGDPPNIMIGSAAGLTF 162 (413)
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHccchhhccCCchhhhhhccCCCCH
Confidence 56899999999999999999999999999999999999999999999999999888655543
No 15
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.
Probab=98.95 E-value=1.3e-09 Score=77.09 Aligned_cols=57 Identities=28% Similarity=0.526 Sum_probs=54.3
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALH 61 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~ 61 (70)
+.||+++++++.|++..+|++.|.+|++++++++++++.|+..||+|+|+|.++.+.
T Consensus 100 ~~s~~~~~~i~~Pi~~~~~~~~g~~~~~~~l~~~~~~~~g~~~~p~g~~~n~i~~~~ 156 (382)
T cd01115 100 FMSNTATVAIMLPVALGLAAKLDISPSRLLMPLAFAASIGGMLTLIGTPPNLVASGY 156 (382)
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcccceecCCchHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999998874
No 16
>TIGR00785 dass anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
Probab=98.95 E-value=9.3e-10 Score=79.83 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=53.5
Q ss_pred eeccHHH-HHHHHHHHHHHHHHHcCCCc--------hHHHHHHHHHHhhhhhccccCCchhhhhhccC
Q psy18199 4 INRTLVT-TILLMTPVTIRLCEVCELNP--------SPILMAMMIFSNIGGGASIVGDPPNAIIALHP 62 (70)
Q Consensus 4 ~~~sN~a-t~~im~Pi~i~ia~~~~~~~--------~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~ 62 (70)
.+.||++ +++++.|++..+|++.|.+| ..+++++++++++||+.||+|+|+|+++.+..
T Consensus 117 ~~~sn~ar~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~l~~~~~~~a~~g~~~t~~g~~~n~i~~~~~ 184 (444)
T TIGR00785 117 MWPSNTARAGGILLPIIKSLLPLLGSKPEKSPRKIGKYLMLGIAYSASIGSSGFLTGSAPNALAAGIL 184 (444)
T ss_pred hCchHhHhHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 4679999 99999999999999999998 55788999999999999999999999987754
No 17
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=98.95 E-value=8.6e-10 Score=81.68 Aligned_cols=62 Identities=27% Similarity=0.290 Sum_probs=58.4
Q ss_pred eeccHHHHHHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 4 INRTLVTTILLMTPVTIRLCEVCELNP---SPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 4 ~~~sN~at~~im~Pi~i~ia~~~~~~~---~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
.|+|||+|+++++|+++.++|+.|+++ .+++++..+.||.+|..-|++||+|++..+.++++
T Consensus 105 aflsND~talilTPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~LpvSNltNLv~~~~~~~~ 169 (423)
T PF02040_consen 105 AFLSNDATALILTPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLPVSNLTNLVAADAFGIS 169 (423)
T ss_pred HHHhccchhhhhHHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccccccCcHHHHHHHccCcC
Confidence 478999999999999999999999986 59999999999999999999999999999998875
No 18
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump.
Probab=98.87 E-value=1.8e-09 Score=76.65 Aligned_cols=61 Identities=38% Similarity=0.611 Sum_probs=56.1
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNP-SPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~-~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
+.||+++++++.|+...++++.|.++ ..+++++.++++.||..||+|+|+|+++.+..+++
T Consensus 92 ~~s~~~~~~il~Pi~~~~~~~~g~~~~~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~~~~i~ 153 (396)
T cd00625 92 FFSNDATAVLLTPIVLALLRKLGLSPPVPLLLALAFAANIGGAATPIGNPPNLIIASLSGLG 153 (396)
T ss_pred HHhchhhhhhhHHHHHHHHHHhCCCCCccHHHHHHHHHhccccccccCCCCceEEEeCCCCC
Confidence 46899999999999999999999999 99999999999999999999999999998855444
No 19
>TIGR00785 dass anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
Probab=98.87 E-value=4.3e-09 Score=76.38 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=56.7
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
+.||+++++++.|+...++++.|.+|..+.+..++++++|+..||+|+|+|.+.++.++++
T Consensus 357 ~~s~~~~~~i~~Pi~~~ia~~~G~~p~~~~~~~~~~~~~~~~~tP~~s~~n~i~~~~g~~~ 417 (444)
T TIGR00785 357 FASNTAHTAALVPIFFSVASAQGIPLELLALALALSASLMGFLTPYATPPNAIAYGSGYVK 417 (444)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCccceeecCCCcc
Confidence 5799999999999999999999999999999999999998899999999999988776554
No 20
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=98.87 E-value=3.7e-09 Score=78.32 Aligned_cols=61 Identities=25% Similarity=0.248 Sum_probs=56.1
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGILE 66 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~~ 66 (70)
|.||++++..|.|+...++++.+.+|..+++.++.+++. +++||+|+|+|.++++.++++.
T Consensus 370 f~SntA~~~~m~Pi~~~ia~~l~~~p~~~~~~v~~~as~-~~~tpv~~~~n~iv~g~G~~k~ 430 (461)
T COG0471 370 FASNTATAIAMVPIAIALASALGGAPLLLLMLVAVSASG-GFLTPVGSPPNPIALGSGYVKF 430 (461)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhh-hhhcCCCCCCCceEECCCCccH
Confidence 689999999999999999999999998888888888884 8999999999999999998863
No 21
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.
Probab=98.82 E-value=7.8e-09 Score=73.19 Aligned_cols=60 Identities=27% Similarity=0.353 Sum_probs=55.4
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
+.||+++++++.|++..++++.|.||..+.+..+++++. +..||+|+|+|++..+.++++
T Consensus 296 ~~sn~~~~~i~~Pi~~~~~~~~g~~p~~~~~~~~~~~~~-~~~tp~~~~~n~i~~~~~~i~ 355 (382)
T cd01115 296 FISNTATAVLLAPIALSIALSLGLPPEALLLAVAIGASC-AFMLPVGTPPNAIVLGPGGYK 355 (382)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHcCccCCCCCeeeeCCCCcc
Confidence 468999999999999999999999999999999999997 799999999999988876554
No 22
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.69 E-value=2.6e-08 Score=73.30 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=58.0
Q ss_pred eeccHHHHHHHHHHHHHHHHHHc-CCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 4 INRTLVTTILLMTPVTIRLCEVC-ELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 4 ~~~sN~at~~im~Pi~i~ia~~~-~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
.|.||+++++++.|+.+.++++. |.+|....+.++++++.+++.+|+++|+|.+.++.++++
T Consensus 376 ~~~s~~a~~~il~Pi~~~~a~~~~g~~p~~~~l~~~~~~~~~~~~lP~~sp~~~i~~~~g~~~ 438 (471)
T PF00939_consen 376 NFMSNTATVAILIPIVISLAAALGGINPLALALIVAFASSFAGFLLPYSSPPNAIAYGTGYYK 438 (471)
T ss_pred HhcCcHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHhhhccccCCcCCcceeEEEcCCCCC
Confidence 47899999999999999999999 999999999999999987799999999999999988765
No 23
>KOG1281|consensus
Probab=98.63 E-value=1.1e-08 Score=78.35 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=55.6
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCC
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~ 64 (70)
|.||++++.+++||...++++++.+|..++++.++++++ +++-|+++|||.++.+.+++
T Consensus 487 F~Sntata~IfiPIl~ela~~l~~hplyl~lp~tl~~Sf-Af~LPvstpPNaivfs~~~~ 545 (586)
T KOG1281|consen 487 FVSNTATASIFIPILAELAEALGIHPLYLMLPTTLACSF-AFMLPVSTPPNAIVFSMGDI 545 (586)
T ss_pred HhcchhheeehHHhHHHHHHhcCCCCceeehhHHHHHHH-HHhcCCCCCCCeEEEeeccc
Confidence 689999999999999999999999999999999999998 89999999999999887653
No 24
>TIGR00935 2a45 arsenical pump membrane protein.
Probab=98.45 E-value=1.4e-07 Score=68.34 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHHHHHHHH--cCCCchHHHHHHHHHHhhhhhccccCCchhhhhhc---cCCCc
Q psy18199 6 RTLVTTILLMTPVTIRLCEV--CELNPSPILMAMMIFSNIGGGASIVGDPPNAIIAL---HPGIL 65 (70)
Q Consensus 6 ~sN~at~~im~Pi~i~ia~~--~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~---~~~~~ 65 (70)
.||++ +++|++..++++ .|.+|.++.+++++++++||.+||+|+++|++..+ ..||+
T Consensus 335 ~sN~~---~~~pi~~~i~~~~~~g~~~~~~~~~l~~~~~~gg~~tp~gs~anli~~~~~~~~g~~ 396 (429)
T TIGR00935 335 MNNMP---TMLVGALSIDQSSATGLPKEPMVYANVIGADLGPKITPIGSLATLLWLHVLEQKGYK 396 (429)
T ss_pred HccHH---HHHHHHHHHhhccccccchhHHHHHHHHHHhcCcccCccccHHHHHHHHHHHHCCcc
Confidence 47877 489999999875 48899999999999999999999999999998654 35553
No 25
>PRK15445 arsenical pump membrane protein; Provisional
Probab=98.44 E-value=8.9e-08 Score=69.62 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=48.8
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhh---hhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAI---IALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli---~~~~~~~~ 65 (70)
|.||+++++++ |+.+..+.+.|.++.++.++++++|++||.+||+|+|+|++ +.+..|++
T Consensus 333 ~~sN~p~~~~~-~~~i~~~~~~~~~~~~l~~al~~ga~~gg~~T~iGs~an~i~~~~~~~~g~~ 395 (427)
T PRK15445 333 VMNNMPTVLIG-ALAIDGSNATGVIKEAMIYANVIGSDLGPKITPIGSLATLLWLHVLAQKGVK 395 (427)
T ss_pred HhccHHHHHHH-HHHHHhccCCcchHHHHHHHHHHhcccCcccchhhhHHHHHHHHHHHHCCCc
Confidence 57999999865 66666666777788899999999999999999999999995 44445554
No 26
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=98.32 E-value=5.1e-07 Score=67.02 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=56.2
Q ss_pred eeccHHHHHHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHhhhhhccccCCchhhhhhccCC
Q psy18199 4 INRTLVTTILLMTPVTIRLCEVCELNPS-----PILMAMMIFSNIGGGASIVGDPPNAIIALHPG 63 (70)
Q Consensus 4 ~~~sN~at~~im~Pi~i~ia~~~~~~~~-----~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~ 63 (70)
-+.||+++..++.|++..+++..|.++. .+.+.+.+++++|+..||+|+|+|.+.++..+
T Consensus 137 ~~~sntat~~i~~piv~~~~~~~~~~~~~~~~~~l~~~i~~~~~ig~~~~~ig~~~N~i~~~~~~ 201 (461)
T COG0471 137 AFPSNTATGGIMLPLILSLSPLLGSPPRDKIGKRLILGIALAANIGSALTPIGNPPNIIAAGLLN 201 (461)
T ss_pred ceecccchhHhhHHhhhcchhhcCCChHHHHHHHHHHHHHHHhHhhcccccccCCccHHHHHhhc
Confidence 4679999999999999999999999998 69999999999999999999999999988766
No 27
>cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.
Probab=98.15 E-value=1e-06 Score=62.78 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=44.2
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccC
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHP 62 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~ 62 (70)
|.||+++++++.|+.... +....+.+++++++||..||+|+|+|++.++.+
T Consensus 303 ~isN~p~~~~~~pi~~~~-------~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~ 353 (384)
T cd01117 303 LISNVPAVLLLLPFLPSA-------DEKDWLLLAAGSTIAGNLTLLGSAANLIVAEAA 353 (384)
T ss_pred HhccHHHHHHHHHHHHhc-------ccHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 569999999999999766 233457889999999999999999999998876
No 28
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=98.13 E-value=4.4e-06 Score=62.57 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=49.0
Q ss_pred eccHHH-HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhh
Q psy18199 5 NRTLVT-TILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAI 57 (70)
Q Consensus 5 ~~sN~a-t~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli 57 (70)
|.+|++ +++.++|++..+|+|.|++|++.+.+.++++.+|..+||++...|.+
T Consensus 101 fl~~Tg~~v~~~lPVi~~vA~k~gi~PsrpLa~as~As~lGi~aSpin~~v~~l 154 (443)
T PRK12489 101 FLCGTGHVVYSILPIIYDVALKNGIRPERPMAAASVASQMGITASPVSAAVVSL 154 (443)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHhcchhHHHHHH
Confidence 457887 69999999999999999999999999999999999999998888877
No 29
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=98.11 E-value=1.4e-06 Score=62.77 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=45.5
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIAL 60 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~ 60 (70)
+.||.++++++.|++.. +.++.+..+++.+++++||..||+|+++|++..+
T Consensus 332 ~isNvp~~~l~~p~~~~-----~~~~~~~~~~l~~g~~~gg~~t~~gs~an~i~~~ 382 (416)
T cd01118 332 VMNNLPAVLIGALALAA-----GHAPEALVYANLIGVDLGPKLTPIGSLATLLWLH 382 (416)
T ss_pred HHccHHHHHHHHHHHhc-----ccccHHHHHHHHHhcccCcccchHHHHHHHHHHH
Confidence 46999999999998876 5778889999999999999999999999999554
No 30
>PLN00136 silicon transporter; Provisional
Probab=98.08 E-value=3.5e-06 Score=63.25 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=45.9
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHhhhhhccccCCchhhhhhcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELN-PSPILMAMMIFSNIGGGASIVGDPPNAIIALH 61 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~-~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~ 61 (70)
+.||++++++|.|++...+...+.+ +.+..+..++++++||-.|++|+++|++..+.
T Consensus 385 ~isNvp~~~~m~p~v~~~~~~~~~~~~~~~~~~la~ga~lGGn~TliGs~ANli~~~~ 442 (482)
T PLN00136 385 LASNVPTVLLMGDEVAAAAALISPAAVTRSWLLLAWVSTVAGNLSLLGSAANLIVCEQ 442 (482)
T ss_pred HhccHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHhhccceeeccchhHHHHHHH
Confidence 5799999999999998665443322 24566779999999999999999999987664
No 31
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.92 E-value=1.2e-05 Score=59.32 Aligned_cols=57 Identities=23% Similarity=0.497 Sum_probs=46.8
Q ss_pred ccHHHHHH-HHHHHHHHHHHHcCCCchH---------HHHHHHHHHhhhhhccccCCchhhhhhccC
Q psy18199 6 RTLVTTIL-LMTPVTIRLCEVCELNPSP---------ILMAMMIFSNIGGGASIVGDPPNAIIALHP 62 (70)
Q Consensus 6 ~sN~at~~-im~Pi~i~ia~~~~~~~~~---------lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~ 62 (70)
.|+++.++ ++.|++.++|++.|.+++. +++++++++++||..|+.|+++|.+..+..
T Consensus 138 ps~~a~~~~i~~pi~~~i~~~~~~~~~~~~~~~~~~~l~l~~~~~a~~~g~~~~~g~~~n~i~~~~l 204 (471)
T PF00939_consen 138 PSTTARAAPILLPILLSICEALGSKPSSKTPRNLGKALMLGIAFAASIGGMGTLTGSAPNLIAAGFL 204 (471)
T ss_pred ccHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHHHHHHhhhccccccccccCCCchHHHHHHH
Confidence 46666654 4559999999999887643 789999999999999999999999876644
No 32
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=97.91 E-value=1.7e-05 Score=58.83 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=48.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccC
Q psy18199 6 RTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHP 62 (70)
Q Consensus 6 ~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~ 62 (70)
.+|...+..+.|+.+.+|+++|.|+.+.+..+.+++++|+.++|+|.+++.+.....
T Consensus 103 ~~~~~~~i~~~PI~i~ia~~lG~d~~~~l~~~~~~a~iG~~aspin~~tv~ia~~ia 159 (433)
T PRK09412 103 AGTGHIAFSTLPVIAEVAKEQGIRPSRPLSIAVVASQIAITASPISAAVVAMSSVLE 159 (433)
T ss_pred hcHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHhcccCCccHHHHHHHHHHh
Confidence 345556677999999999999999999999999999999999999888777766544
No 33
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=97.84 E-value=3.8e-05 Score=57.13 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhc
Q psy18199 6 RTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIAL 60 (70)
Q Consensus 6 ~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~ 60 (70)
.+|..++..+.|+.+.+|+++|.|+.+.+....+++++|+.++|++.+++.....
T Consensus 99 ~g~~~~~l~f~PI~i~la~~lG~d~i~~~ai~~~aa~iG~~as~in~~~~~~ig~ 153 (430)
T TIGR00770 99 AGTGHVVYSTLPVIAEVAKEQGIKPERPLSLAVVSSQIAITASPVSAAVVFMSAI 153 (430)
T ss_pred hchHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 3788889999999999999999999999999999999999999998877776644
No 34
>KOG1281|consensus
Probab=97.82 E-value=2e-05 Score=60.87 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=51.0
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCC---------------------------c---------------------------
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELN---------------------------P--------------------------- 30 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~---------------------------~--------------------------- 30 (70)
++||++++++|+|++.++.++.... |
T Consensus 144 wisntA~tamm~pi~~avL~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vp~~~v~~~~~~~~~g~~~~~~~~~i~~~ 223 (586)
T KOG1281|consen 144 WISNTATTAMMIPIATAVLQELPSFNDEEQHRMLESVSHLWAVEAIPTSFLVPLLTVFFPILKDETGKPMSPTSSSILST 223 (586)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHhhcchhhhcCCcccCCcchhhcccccCCccCCCCCcchhhhhhh
Confidence 6899999999999999998876440 0
Q ss_pred ----------hHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 31 ----------SPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 31 ----------~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
+.+.+++++++++||.+|..|+.||++..+..+.-
T Consensus 224 ~~s~~~~~~~~g~~L~ia~Sa~igg~~titGT~pnlVll~~~~~~ 268 (586)
T KOG1281|consen 224 MWSSTIMLLLKGFTLGIAYSAYIGGTLTITGTAPNLVLLGNMNVR 268 (586)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhcchhhhcCCCccHHHHHHHHHh
Confidence 34679999999999999999999999987765433
No 35
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=97.76 E-value=3.9e-05 Score=56.54 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=55.0
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGILE 66 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~~ 66 (70)
+.||++....++|++..++++.|.++..+..+..++++. ...+|+ +|+|.++.+..+++.
T Consensus 341 ~~sn~a~~~~l~Piv~~ia~~~G~~~~~l~~a~~i~~~~-~~~SPv-s~~~~l~~~~~~~~~ 400 (431)
T TIGR00784 341 VMSNDAYYFGVLPIFAEAASAYGIDPVEIARASIMGQPV-HLLSPL-VPSTVLLVGMLGVSL 400 (431)
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc-hhcCCc-hHHHHHHHHccCCCH
Confidence 569999999999999999999999999999999988886 889999 999999999887763
No 36
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=97.68 E-value=7.1e-05 Score=55.21 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=52.0
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
+..|+.+.+++.|+...+++|.|++|..+...++.+++.++ .+|.|+|+|..... .|++
T Consensus 111 ~~~~~~~~li~~p~~~~l~~~lgi~~~~l~~~i~~~~~~~~-~~P~g~p~~~~a~~-lg~~ 169 (431)
T TIGR00784 111 DGDGTTTYMITVSAMLPLYKRLGMNPMVLAGIAMLGLGIMN-MIPWGGPTTRAISV-LGLD 169 (431)
T ss_pred HhccchhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhc-ceeCCchHHHHHHH-cCCC
Confidence 56788889999999999999999999999999999999988 99999999966554 3544
No 37
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=97.39 E-value=0.00015 Score=55.38 Aligned_cols=55 Identities=11% Similarity=-0.093 Sum_probs=48.6
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCC-C---chHHHHHHHHHHhhhhhccccCCchhhhhhc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCEL-N---PSPILMAMMIFSNIGGGASIVGDPPNAIIAL 60 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~-~---~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~ 60 (70)
+.+|...+++|+|++-.+ ...|. + ..++-++++.++++||-+||+|..+|+++.+
T Consensus 404 ~IDNVP~vatmIPvIk~l-~~~G~~~~~~~~~LWWALALGA~LGGNaTpiGAsANLVv~~ 462 (515)
T TIGR00774 404 ISDNVFVGTVYINEAKAA-LTEGLITREQFELLAVAINTGTNLPSVATPNGQAAFLFLLT 462 (515)
T ss_pred hhccHHHHHHHHHHHHHH-HhcCCCccccccHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 568999999999999999 67777 2 3588999999999999999999999998755
No 38
>TIGR00786 dctM TRAP transporter, DctM subunit. force-dependent uptake of dicarboxylates into R. capsulatus.
Probab=97.34 E-value=0.00056 Score=49.55 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=49.7
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccc-cCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASI-VGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~Tp-iG~p~Nli~~~~~~~~ 65 (70)
+.+|+++..++.|+...++++.|.||..+.+.+.+++.+ |..|| +|.+.+ ...+..|++
T Consensus 313 ~~~~~a~~~i~~PI~~p~a~~~Gv~p~~~~~~~~~~~~~-g~ltPPvg~~~~-~~~~~~~~~ 372 (405)
T TIGR00786 313 FMDLTPAILILTPILLPVAVHLGIDPVHFGVMFVLNLEI-GLLTPPVGTNLF-VASGVAKMS 372 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hcCCCCchHHHH-HHHHhcCCC
Confidence 678999999999999999999999999999999999998 68886 985443 446666654
No 39
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=97.21 E-value=0.00027 Score=53.99 Aligned_cols=54 Identities=9% Similarity=-0.083 Sum_probs=48.3
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCC-Cc---hHHHHHHHHHHhhhhhccccCCchhhhhh
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCEL-NP---SPILMAMMIFSNIGGGASIVGDPPNAIIA 59 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~-~~---~~lll~ia~aa~~Gg~~TpiG~p~Nli~~ 59 (70)
+.+|+..+++|+|++-... +.|. ++ .++-++++.++|+||-+||+|..+|+++.
T Consensus 405 iiDNVp~~~~~ip~v~~~~-~~g~~~~~~~~~L~~ALa~Ga~Lggn~T~iGasAnlv~~ 462 (513)
T PRK09547 405 ISDNVFVGTVYINEAKAAL-ESGAISRKQFELLAVAINTGTNLPSVATPNGQAAFLFLL 462 (513)
T ss_pred hhchHHHHHHHHHHHHHHH-hcCCCccccchHHHHHHHHhcccchhhhHHHHHHHHHHH
Confidence 4689999999999999998 7777 33 58899999999999999999999999877
No 40
>KOG2639|consensus
Probab=97.07 E-value=0.00034 Score=54.38 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=55.2
Q ss_pred eccHHHHHHHHHHHHHHHHH--HcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhc---cCCCccccC
Q psy18199 5 NRTLVTTILLMTPVTIRLCE--VCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIAL---HPGILESVS 69 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~--~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~---~~~~~~~~~ 69 (70)
|..|.+.+.+|.++.....+ +.|++..|++.+.+++|+.||-.|++|..+|.+..+ .-||.-+|-
T Consensus 585 fidNipvt~~mVkl~~~lv~~~~~glpl~pliWaL~~ga~~gGNgTLiGasANvv~A~iAeqHGYkltF~ 654 (685)
T KOG2639|consen 585 FIDNIPVTAIMVKLLTSLVANSAVGLPLQPLIWALALGACLGGNGTLIGASANVVAAGIAEQHGYKLTFT 654 (685)
T ss_pred HhccCcchHHHHHHHHHHhhccccCCCcchHHHHHHhhhhhcCCceeechhhHHHHHHHHHHcCceEEeh
Confidence 45699999999999998865 579999999999999999999999999999998754 446665553
No 41
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0006 Score=50.93 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=48.0
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALH 61 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~ 61 (70)
+.+|..+++++.|.+-........+ .++..+.+++|++||-.|++|+.+|++..+.
T Consensus 334 v~~NvP~vl~~~~~i~~~~~~~~~~-~~lw~A~a~Ga~lGgnlT~IGs~Anlv~~~i 389 (424)
T COG1055 334 VLDNVPTVLTFAPIIKGLAANGMGK-EPLWLALALGADLGGNLTPIGSAANLVWLGV 389 (424)
T ss_pred hhccchHHHHHHHHHHhhcccccch-HHHHHHHHHhCccccchhhhhhHHHHHHHHH
Confidence 3589999999999988877664443 7899999999999999999999999987654
No 42
>PLN00137 NHAD transporter family protein; Provisional
Probab=96.88 E-value=0.00071 Score=50.17 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=44.6
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHhhhhhccccCCchhhhhhcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNP-SPILMAMMIFSNIGGGASIVGDPPNAIIALH 61 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~-~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~ 61 (70)
+.||...++.++|+.- ..+.++ .+...++++++++||..|++|+.+|+++.+.
T Consensus 338 ~IsNVP~~~~~~p~~~----~~~~~~~~~~w~aLalga~lGGn~tliGS~Anvi~~~~ 391 (424)
T PLN00137 338 IIDNVPLVAATMGMYD----LTDYPMDSELWQLIALCAGTGGSLLVIGSAAGVAFMGM 391 (424)
T ss_pred HhcchHHHHHHhhhhh----hccCCcchHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 4689999999999987 234332 5788999999999999999999999998764
No 43
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump.
Probab=96.70 E-value=0.0021 Score=45.63 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=45.6
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALH 61 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~ 61 (70)
|.+|++++.++.|+...++ ++.........++++|+..|+.|+++|++..+.
T Consensus 313 ~~~n~~~~~~~~Pi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~a~~l~~~~ 364 (396)
T cd00625 313 FISNVPTVALLLPIAASLA-----PPEPAWLALALGSTLGGNLTLIGSLANLIPLGA 364 (396)
T ss_pred HhccHHHHHHHHHHHHHhc-----CchHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 5689999999999999988 566677788899999999999999999987664
No 44
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family. These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate.
Probab=96.50 E-value=0.001 Score=49.24 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=43.8
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCC
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPG 63 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~ 63 (70)
+.||...++.++|+.-. +. ..+...++++++++||.+|++|+.+|+.+.+..+
T Consensus 333 ~IdNVP~va~~i~l~~~-----~~-~~~~w~aLalga~lGGn~tlIGS~Anvv~~~~~~ 385 (420)
T TIGR00775 333 VLDNVPLVAATLGMYPL-----PM-SDGLWKLIAYTAGTGGSILIIGSAAGVALMGAEK 385 (420)
T ss_pred HhccHHHHHHHHHhccc-----cC-chHHHHHHHHHHCccchhHHHHHHHHHHHHHHHH
Confidence 46899999999999643 11 4578888999999999999999999998776543
No 45
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=96.32 E-value=0.012 Score=44.35 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCC
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~ 64 (70)
||+++...+.|+...+|++.|.||..+.+++..++++|....|++... ....+..|+
T Consensus 367 Sg~a~~~af~pi~~pia~~lG~~pv~~~~~~~~~~~~G~~~sPvs~~i-i~~ag~a~~ 423 (455)
T PRK10654 367 SGNAPFYAFVELIPKLAHSSGINPAYLTIPMLQASNLGRTISPVSGVV-VAVAGMAKI 423 (455)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcchhhH-hhhhcccCC
Confidence 899999999999999999999999999999999999987777764322 223344444
No 46
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=95.59 E-value=0.023 Score=37.37 Aligned_cols=38 Identities=18% Similarity=0.450 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhh
Q psy18199 8 LVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGG 45 (70)
Q Consensus 8 N~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg 45 (70)
+.++.+++.|+++.+|+|.|.+|..+-+.+..+++-||
T Consensus 112 ~~~~~Ai~aPia~~lA~~~gi~p~l~~~~v~~Ga~aG~ 149 (149)
T PF07158_consen 112 SIAAVAIMAPIAMSLARRTGINPLLMALIVVCGAQAGG 149 (149)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccccCC
Confidence 45788999999999999999999999999888888653
No 47
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=95.31 E-value=0.043 Score=40.34 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=48.1
Q ss_pred ec-cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhh-hhhccCCC
Q psy18199 5 NR-TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNA-IIALHPGI 64 (70)
Q Consensus 5 ~~-sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nl-i~~~~~~~ 64 (70)
+. |+++....+.|+...++++.|.||..+-+.+..+..+|-...|+| .|+ +..+..|.
T Consensus 311 ~~~s~~a~~~~~~PIl~pia~~~Gidpv~~gi~~~i~~~iG~~tpPv~--~~l~v~~gia~v 370 (388)
T TIGR00771 311 ITGSGNAPFIAFNTAIPPHAVELGYTHVNLGMPMAIAGALGRTASPIA--GVVVVCAGLAMV 370 (388)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcHH--HHHHHHHhhcCC
Confidence 45 689999999999999999999999999999999999988888887 333 34444444
No 48
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=92.63 E-value=0.29 Score=36.72 Aligned_cols=60 Identities=8% Similarity=0.043 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCcc
Q psy18199 6 RTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGILE 66 (70)
Q Consensus 6 ~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~~ 66 (70)
-|.++-+..+.|+.-.+++..|+++...+++..+++.++-..+|+.. .=+...+..|+++
T Consensus 379 ~SGsg~a~~~mpim~plad~~Gi~~q~~vla~q~g~gl~n~isPtsg-~~m~~l~ia~V~~ 438 (465)
T PF03606_consen 379 GSGSGQAAAFMPIMPPLADLLGITRQTAVLAFQFGDGLGNSISPTSG-VLMAVLGIAKVSY 438 (465)
T ss_pred CCchHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhccchHH-HHHHHhhhcCCCH
Confidence 47889999999999999999999999999999999999999999733 3344556666654
No 49
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=92.35 E-value=0.27 Score=34.05 Aligned_cols=50 Identities=22% Similarity=0.171 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhh
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNA 56 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nl 56 (70)
++..+.+++.|+...+++|.|.++..+.-.+.-++..|.-+.|+.+..-.
T Consensus 217 s~~~ti~i~~pi~~~l~~~~g~~~~~~a~ai~~~~~~g~~l~P~s~~~i~ 266 (303)
T PF03553_consen 217 SSWGTIAIMGPIFKPLAEKMGISPPLLAGAIESGATFGDPLSPWSDTTIL 266 (303)
T ss_pred hhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHhhhhhcCCCCcchHHHHH
Confidence 67889999999999999999999999999999999999999999876533
No 50
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=92.31 E-value=0.34 Score=36.91 Aligned_cols=59 Identities=7% Similarity=0.087 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCcc
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGILE 66 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~~ 66 (70)
|.+|...-+.|++-.+|++.|.++..+.+++..++++|=..+|+. +.=+.+.+..|+|+
T Consensus 370 SGnAaffAF~~lvp~iA~~~G~~~~~l~lpmq~as~lgRt~SPVa-gviIavAg~a~vSP 428 (455)
T PRK09804 370 SGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPIT-AVVVVTSGIAGVSP 428 (455)
T ss_pred CchHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHhhccccCchh-hHHhhhccccCCCH
Confidence 778888899999999999999999999999999999999999994 44466666666653
No 51
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange. Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane
Probab=92.10 E-value=0.077 Score=40.45 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhhhhhccccCCchhhhhhccCCC
Q psy18199 31 SPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64 (70)
Q Consensus 31 ~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~ 64 (70)
+-++|=-+.+..+||.+|++|-|||+++.+..|.
T Consensus 203 RsLmMH~~VGTALGGV~TmVGEPQNLiIa~~agW 236 (515)
T PF06450_consen 203 RSLMMHAAVGTALGGVMTMVGEPQNLIIAKQAGW 236 (515)
T ss_pred HHHHHhcccchhhcceeeecCCchhhhhhhhcCC
Confidence 4578888999999999999999999999887664
No 52
>TIGR00786 dctM TRAP transporter, DctM subunit. force-dependent uptake of dicarboxylates into R. capsulatus.
Probab=90.55 E-value=0.65 Score=33.68 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhh
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNA 56 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nl 56 (70)
|+.++++++.|+.+.+.+|.|.|+... .++.+..|+..++ .|||.
T Consensus 94 s~~ataa~~~~~~iP~m~~~g~~~~~a---~av~a~~~~~g~l--~Pp~~ 138 (405)
T TIGR00786 94 SSVATAAALGSLLIPAMTKAGYPKAFA---AGVIAASGIIGPL--IPPSI 138 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHhccccc--cCchH
Confidence 799999999999999999999999884 3444443333333 45555
No 53
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=90.17 E-value=0.96 Score=34.01 Aligned_cols=48 Identities=27% Similarity=0.388 Sum_probs=40.5
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCC
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGD 52 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~ 52 (70)
|....++..++.|+...++++.|+||..+-+.......+|...-|+|-
T Consensus 329 fld~~a~ili~~Pil~Pi~~~~Gidpv~fgii~~~~~~ig~iTPPvG~ 376 (425)
T PRK15060 329 VMDLTPTVLILTPVLMPLVKEAGIDPIYFGVMFIINCSIGLITPPVGN 376 (425)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhCCCCCccH
Confidence 456788999999999999999999999988888888888655555554
No 54
>PRK09821 putative transporter; Provisional
Probab=90.00 E-value=1.1 Score=34.12 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhh-hhccccCCchhhhhhccCCC
Q psy18199 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIG-GGASIVGDPPNAIIALHPGI 64 (70)
Q Consensus 9 ~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~G-g~~TpiG~p~Nli~~~~~~~ 64 (70)
|.+-.++.|+...++||.|.+...+.++++.+.+.. .+.-|-..|.| +.+..|.
T Consensus 119 dv~fvil~Pl~~~l~kk~~~~~~~l~l~~~~~l~~~h~~vPP~Pgp~~--~a~~Lg~ 173 (454)
T PRK09821 119 DVGFIILAPIIYGFAKVAKVSPLKFGLPVAGIMLTVHVALPPHPGPVA--AAGLLHA 173 (454)
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHcccccCCChHHHH--HHHHhCC
Confidence 567779999999999999999898888876443322 22334444444 3455444
No 55
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=89.79 E-value=0.16 Score=38.29 Aligned_cols=34 Identities=32% Similarity=0.564 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhhhhhccccCCchhhhhhccCCC
Q psy18199 31 SPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64 (70)
Q Consensus 31 ~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~ 64 (70)
+-++|-.+.+..+||.+|.+|.|+|+++....|.
T Consensus 203 RSLmMHagVGTALGGVmTmVGEPQNLiIa~~AgW 236 (516)
T COG3067 203 RSLMMHAGVGTALGGVMTMVGEPQNLIIAKQAGW 236 (516)
T ss_pred HHHHHhhccchhhcceeeeccCchhhhhhhhccc
Confidence 4578888999999999999999999999877654
No 56
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=89.59 E-value=1.4 Score=33.34 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCC
Q psy18199 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64 (70)
Q Consensus 9 ~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~ 64 (70)
|..-.++.|++..++||.|.+...+..+++.+....-... -++|--+.+.+..|.
T Consensus 115 dv~fvil~Pi~~~lak~~~~~~~~~~~~l~~gl~~th~~v-PP~Pgpla~a~~lga 169 (438)
T PRK14984 115 EVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFL-PPHPGPTAIATIFNA 169 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHhCC-CCCCcHHHHHHHhCC
Confidence 3455689999999999999998888888777645422232 367776666665553
No 57
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=89.30 E-value=0.81 Score=34.19 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=44.9
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhh
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~ 59 (70)
|.+-.++.+++.|+.+.++++.|+||.-+-+...+-..+|...=|+| .|+++.
T Consensus 283 fmd~~a~ilil~Pil~Pi~~~~GIDPvhfGvv~v~Nl~IGliTPPvG--~~Lfv~ 335 (379)
T COG1593 283 FMDLTAAILILTPILLPIAAALGIDPVHFGVVFVLNLSIGLITPPVG--MVLFVA 335 (379)
T ss_pred hccHHHHHHHHHHHHHHHHHHhCCCceeeHHHHHHHHHhhCCCCCcc--hhHHHH
Confidence 34567899999999999999999999999999999999987777888 455543
No 58
>PRK09921 permease DsdX; Provisional
Probab=88.91 E-value=1.4 Score=33.20 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 9 ~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
+....++.|++..++||.|.++.+..++.+.+....-...| ++|.-+.+.+..|.+
T Consensus 119 ~~~~vil~Pl~~~lak~~~~s~~~~~~~~~~~~~~~h~~vP-p~Pg~~~~a~~lg~~ 174 (445)
T PRK09921 119 EVGVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVVP-PHPAALFVANKLGAD 174 (445)
T ss_pred HhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhHhcCC-CCcHHHHHHHHhCCC
Confidence 34556899999999999999977777776666554343434 677766666666543
No 59
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=88.75 E-value=1.7 Score=32.20 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 11 TILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 11 t~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
...++.|++..++||.|.++..+.++.+.+-...-...|- +|.-+.+.+..|.+
T Consensus 117 ~~vil~Pi~~~l~~~~g~s~~~~a~~~~~~~~~~~~~vPp-~Pg~~~~a~~~g~~ 170 (440)
T TIGR00791 117 GFVLLIPLVFSIAAEAKISLLKLGIPMVAALSVAHGFLPP-HPGPTAIANEYGAD 170 (440)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhceeCCC-CccHHHHHHHhCCC
Confidence 4668999999999999999999888887776664445554 44434555555544
No 60
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=88.12 E-value=1.8 Score=32.84 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 9 ~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
+....++.|++.+++||.|.+...+-++++-+...-...-|= +|.-+...+.++.+
T Consensus 116 dv~~v~l~Pia~alak~~~is~~~i~v~la~g~~~~h~~vpP-~Pgpia~a~~~~a~ 171 (442)
T COG2610 116 DVGFVLLIPLAFALAKEAGISLLKIAVPLAAGLSVTHMFVPP-HPGPIAAAGPFGAD 171 (442)
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcccCCC-CCchhhhhhhcCcc
Confidence 567788999999999999999999999998887543333333 44445555555543
No 61
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=86.14 E-value=2.5 Score=31.79 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhh-hhccCCCc
Q psy18199 13 LLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAI-IALHPGIL 65 (70)
Q Consensus 13 ~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli-~~~~~~~~ 65 (70)
+.+.|+.+.++.++|.|+..-.-.+..++.. |..++..+|-+.. .++..|++
T Consensus 140 i~~~~il~pi~~alG~d~~~a~a~v~~~~~~-g~~~~~~npf~~~iAq~iaglp 192 (465)
T PF03606_consen 140 IAFMPILIPILIALGYDPITAAAAVILGAGA-GFAGPPSNPFTVGIAQKIAGLP 192 (465)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-hhcCCccChHHHHHHHHhcCCC
Confidence 8899999999999999987766666666665 7888999987664 44555543
No 62
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=85.45 E-value=3.2 Score=31.35 Aligned_cols=56 Identities=9% Similarity=0.016 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 9 ~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
|....++.|++..++||.|.+...+.++++.+....-...| -+|--+-+.+..|.+
T Consensus 115 dv~~viL~Pl~~~la~~~~~s~~~~~~~l~~gl~~~h~lvP-PtPgpla~a~~lg~d 170 (441)
T PF02447_consen 115 DVGFVILAPLAFSLARKTGKSLLYLALPLAAGLSVTHALVP-PTPGPLAAAGALGAD 170 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccC-CCCcHHHHHHHhCCC
Confidence 46778999999999999999988888887777665433444 366656666665544
No 63
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=85.19 E-value=2.4 Score=32.66 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhh
Q psy18199 6 RTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59 (70)
Q Consensus 6 ~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~ 59 (70)
=||++..++|.++=...+++.|.|+..++-....++..|.+ -+|+|+.+.
T Consensus 438 GS~T~SN~lF~~lQ~~~A~~lgl~~~l~~Aaq~~Gg~~g~m----Isp~~i~~a 487 (522)
T PF02652_consen 438 GSNTSSNALFGPLQVTTAQQLGLPPLLIAAAQNVGGAMGNM----ISPQNIVAA 487 (522)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----cCHHHHHHH
Confidence 48999999999999999999999998777777777766554 367787653
No 64
>PRK10472 low affinity gluconate transporter; Provisional
Probab=84.79 E-value=3.1 Score=31.51 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCC
Q psy18199 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64 (70)
Q Consensus 9 ~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~ 64 (70)
|....++.|++..++||.|.+...+.++++.+-...-...|= +|--+.+.+..|.
T Consensus 119 dv~fvil~Pl~~~la~~~~~s~~~~~~~l~~gl~~~H~~vPP-~Pgp~a~a~~l~a 173 (445)
T PRK10472 119 EVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLP-GPAPMLLASQMNA 173 (445)
T ss_pred hhHHHHhHHHHHHHHHHHCCChHHHHHHHHHHHHhcccccCC-CcHHHHHHHHhCC
Confidence 567789999999999999999998888888874443333332 4544555555443
No 65
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=82.68 E-value=1.7 Score=30.53 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=29.8
Q ss_pred ccHHHHHHHH-----HHHHHHHHHHcCCCchHHHHHHHHHH
Q psy18199 6 RTLVTTILLM-----TPVTIRLCEVCELNPSPILMAMMIFS 41 (70)
Q Consensus 6 ~sN~at~~im-----~Pi~i~ia~~~~~~~~~lll~ia~aa 41 (70)
.+|...+..+ .|+....+++.|.++.++.+.+++|+
T Consensus 311 ~~n~p~~~~~~~~~~~pi~~~~~~~~Gv~~~~l~~~~~ia~ 351 (351)
T PF03600_consen 311 ISNVPATLLMSNDAMLPIAISMAQQFGVSPLPLAWALAIAA 351 (351)
T ss_pred HHhhhHHHHHhhhHHHHHHHHHHHHCCCCHHHHHHHHHhcC
Confidence 4566666666 99999999999999999988887763
No 66
>PRK10034 fructuronate transporter; Provisional
Probab=81.72 E-value=4.8 Score=30.54 Aligned_cols=54 Identities=7% Similarity=0.130 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCC
Q psy18199 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPG 63 (70)
Q Consensus 9 ~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~ 63 (70)
|....++.|++.+++||.+.++..+.++++.+....-..-|= +|--+.+.+..|
T Consensus 118 dv~~v~laPi~~~lak~~~~s~~~~~~~l~~gl~~~h~lvPP-~Pgpla~a~~l~ 171 (447)
T PRK10034 118 EVAFIMLAPLVIVIAAEAKIPFLKLAIPAVAAATTAHSLFPP-QPGPVALVNAYG 171 (447)
T ss_pred HhHHHhhHHHHHHHHHHhCcCHHHHHHHHHHHHHHhhcccCC-CCcHHHHHHHhC
Confidence 455677999999999999999999988888877765444442 554455555544
No 67
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=79.27 E-value=5 Score=30.97 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhh
Q psy18199 6 RTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59 (70)
Q Consensus 6 ~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~ 59 (70)
=|||..-++|.++=...|++.|.|+..++-..+.++..|.+. +|+|+.+.
T Consensus 444 GS~TsSN~LFg~lQ~~tA~~lGl~~~li~A~q~~Gg~~G~mI----sp~~I~~a 493 (530)
T TIGR00795 444 GSDTSSNLLFGSLQLLTAEQIGLPETLLLAANTVGGVMGKMI----SPQSIAIA 493 (530)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhHHHhhcc----CHHHHHHH
Confidence 389999999999999999999999988777777777776553 67787643
No 68
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=78.52 E-value=3.2 Score=30.97 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhh
Q psy18199 12 ILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNA 56 (70)
Q Consensus 12 ~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nl 56 (70)
+--++|++..+++|.|+.|.+-+-.-..+|++|=.++|+....=.
T Consensus 105 a~s~lPVI~eVA~~~~IRPeRPls~svvASq~aItaSPiSAA~~~ 149 (364)
T PF03605_consen 105 AYSLLPVIAEVAKENGIRPERPLSISVVASQIAITASPISAATVA 149 (364)
T ss_pred HHHhhHHHHHHHHHcCCCCCCchHHHHHHHhcchhcCcHHHHHHH
Confidence 445899999999999999999998999999999888888655433
No 69
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=78.21 E-value=6.6 Score=29.04 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=39.0
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhcc-ccC
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGAS-IVG 51 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~T-piG 51 (70)
+..-.++..+..|+...+.++.|+||..+-+.+.+.+.+| ..| |+|
T Consensus 329 ~m~~~a~~ii~~pi~~P~~~~~Gidpi~~g~~~~~~~~ig-~iTPPvg 375 (416)
T PF06808_consen 329 FMDTTAAIIIVAPILAPIAQALGIDPIHFGVFMFYNAEIG-LITPPVG 375 (416)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHhc-CCCCCcc
Confidence 3456788889999999999999999999999999999995 555 444
No 70
>PRK10420 L-lactate permease; Provisional
Probab=77.90 E-value=5.6 Score=30.93 Aligned_cols=50 Identities=12% Similarity=0.039 Sum_probs=40.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhh
Q psy18199 6 RTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59 (70)
Q Consensus 6 ~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~ 59 (70)
=|||..-++|.++=...+++.|.++..++-.-..++..|.+ =+|+|+.+.
T Consensus 458 GS~TsSN~LF~~lQ~~tA~~lgl~~~li~Aaq~~Gg~~Gkm----Ispq~I~~a 507 (551)
T PRK10420 458 GSDTSSNALFAALQATAAQQIGVSDVLLVAANTTGGVTGKM----ISPQSIAIA 507 (551)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHhhc----cCHHHHHHH
Confidence 38999999999999999999999998777777777776555 367887643
No 71
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=76.55 E-value=9.9 Score=28.71 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhh
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~ 59 (70)
|.-+|...+.|+.+.++++.|.++....=++.-+|-+|--.+|+.+.+|+-..
T Consensus 122 ss~gt~~~~g~~l~~i~~~~g~~~~~~agai~sGa~fGD~~sP~Sdtt~l~a~ 174 (454)
T TIGR00931 122 TSWGTVGTIGVAMMGIGTGLGIDLAIAAGAVVCGAYFGDKLSPLSDTTNFASG 174 (454)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCCCCcHHHHHHH
Confidence 45678889999999999999999876666666678888889999998886543
No 72
>PRK09695 glycolate transporter; Provisional
Probab=74.96 E-value=7.5 Score=30.32 Aligned_cols=50 Identities=10% Similarity=0.035 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhh
Q psy18199 6 RTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59 (70)
Q Consensus 6 ~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~ 59 (70)
=|||..-++|.++=...+++.|+++..++-.-..++..|.+ =+|+|+.+.
T Consensus 466 GS~TsSN~LF~~lQ~~tA~~lGl~~~li~Aaq~~Gg~~Gkm----Ispq~I~~a 515 (560)
T PRK09695 466 GSDTSSNALFGSLQSTTAQQINVSDTLLVAANTSGGVTGKM----ISPQSIAVA 515 (560)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHhhc----cCHHHHHHH
Confidence 38999999999999999999999998777777777766554 367887653
No 73
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=73.13 E-value=11 Score=29.61 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=37.5
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhcc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGAS 48 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~T 48 (70)
+...+++..++.|+...+.++.|+||..+-+-+.+.+.+| ..|
T Consensus 445 ~l~~~a~~ii~~pi~~P~l~~lGidpi~~~~~v~~~~~ig-~iT 487 (613)
T TIGR02123 445 GLPTTANYIITATLAAPALIALGVPPIAAHMFVFYFGILA-DIT 487 (613)
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCC
Confidence 4567889999999999999999999999999999999984 555
No 74
>TIGR00529 AF0261 converved hypothetical integral membrane protein. This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins.
Probab=69.76 E-value=18 Score=26.74 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCC
Q psy18199 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPG 63 (70)
Q Consensus 9 ~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~ 63 (70)
++...++.|++..+++|.|.++...-.+...+-...=...|. +|.-+.+.+..|
T Consensus 108 ~~g~vilaPlv~~la~~~~~s~~~~~~~~~~~~~v~h~~~Pp-~Pgpi~aa~~l~ 161 (387)
T TIGR00529 108 PGGALFSAPMVKNSLKEERINPEKLTVKNYWFRHTWEFFWPI-YPAVVLVSALSG 161 (387)
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHhC
Confidence 456677999999999999999887777777776665555554 444444444443
No 75
>PRK11588 hypothetical protein; Provisional
Probab=67.72 E-value=17 Score=28.16 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhh-hhhccCCC
Q psy18199 13 LLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNA-IIALHPGI 64 (70)
Q Consensus 13 ~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nl-i~~~~~~~ 64 (70)
..+.|+.+.+++++|.|+.--+-.+..++.+ |+++-.=||-.. +.++..|+
T Consensus 172 i~f~pi~v~l~~alGyD~ivg~ai~~lg~~i-Gf~~s~~NPftvgIAQ~iAgl 223 (506)
T PRK11588 172 IAFAIIIAPLMVRLGYDSITTVLVTYVATQI-GFATSWMNPFSVAIAQGIAGV 223 (506)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHhhh-hhcccccCccHHHHHHHhcCC
Confidence 4699999999999999999888888888887 455555577766 34444443
No 76
>PRK11588 hypothetical protein; Provisional
Probab=66.31 E-value=15 Score=28.53 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhcccc
Q psy18199 6 RTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIV 50 (70)
Q Consensus 6 ~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~Tpi 50 (70)
.|..+=++++.|+...+++..|+++.-..++--++-.+-...||.
T Consensus 416 pSgSGqAaitmPIm~Plad~lGisrq~avlAfq~GDg~tNlI~Pt 460 (506)
T PRK11588 416 TSGSGQAALTMPLMAPLADLVGVNRQVAVLAFQLGDGFTNIIYPT 460 (506)
T ss_pred cChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHhhhh
Confidence 477888999999999999999999999999999998887888886
No 77
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=61.63 E-value=16 Score=23.24 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhcccc
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIV 50 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~Tpi 50 (70)
|.++++.+.++++ ..|.-+.+-.+++.+++|+|+..|..
T Consensus 48 SSsa~~~i~v~l~-----~~g~l~~~~al~~ilGaNiGtt~~~~ 86 (142)
T PF02690_consen 48 SSSAVTLIVVSLV-----AAGVLSLEQALAIILGANIGTTITAL 86 (142)
T ss_pred chHHHHHHHHHHH-----HhcccCHHHHHHHHHhhhHHHHHHHH
Confidence 5666666555443 33666777888999999998877653
No 78
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=61.07 E-value=21 Score=27.30 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhcccc
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIV 50 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~Tpi 50 (70)
|..+=.++..|+.+..++++|.++....++..++-..-...+|.
T Consensus 369 SGsGqwai~aPImvP~a~~LGvs~~~tv~Ay~~GD~~tNlI~Pf 412 (438)
T TIGR00366 369 SGGGHWAIQGPIVIPAAQALGVDLGKSVMAIAYGDAWTNMAQPF 412 (438)
T ss_pred CchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHhHHHhhHH
Confidence 55667789999999999999999999999999998776777765
No 79
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=58.01 E-value=12 Score=27.86 Aligned_cols=45 Identities=11% Similarity=0.284 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCCc---hHHHHHHHHHHhhhhhccccCCchhhhhhccC
Q psy18199 18 VTIRLCEVCELNP---SPILMAMMIFSNIGGGASIVGDPPNAIIALHP 62 (70)
Q Consensus 18 i~i~ia~~~~~~~---~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~ 62 (70)
+...+...++++. .++.+--|++-.+|+.+||+|.|...++.+..
T Consensus 125 iLvEIv~~lpl~R~~Kv~~~ViaCFsIGlGAaLTPiGEPLSTIaVSKL 172 (347)
T PF07854_consen 125 ILVEIVNALPLDRKSKVKLVVIACFSIGLGAALTPIGEPLSTIAVSKL 172 (347)
T ss_pred HHHHHHHhCCCcccceeEEeehhHHHHhcCccccCCCCCcHHHHHHHH
Confidence 3445555555553 45677778888899999999999988776544
No 80
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=55.34 E-value=7.6 Score=29.21 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHhhhhhccccCCchhhhh
Q psy18199 30 PSPILMAMMIFSNIGGGASIVGDPPNAII 58 (70)
Q Consensus 30 ~~~lll~ia~aa~~Gg~~TpiG~p~Nli~ 58 (70)
....+++.-+++|+|.-.||+|+-.+++=
T Consensus 356 ~~~~~~A~lIG~nlGp~lTp~GSLATLLW 384 (423)
T PF02040_consen 356 REALIYALLIGVNLGPNLTPIGSLATLLW 384 (423)
T ss_pred HHHHHHHHHHhcccCcccchHHhHHHHHH
Confidence 34678899999999999999999998863
No 81
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=52.38 E-value=14 Score=28.18 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCc
Q psy18199 15 MTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDP 53 (70)
Q Consensus 15 m~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p 53 (70)
.+|++..++++.|+.|.+-+-....+|.++=.++|+...
T Consensus 112 ilPVI~eVA~~~gIrPeRPls~avVsSQ~aItASPISAA 150 (436)
T COG2704 112 ILPVIAEVAKKNGIRPERPLSAAVVSSQIAITASPISAA 150 (436)
T ss_pred ehhHHHHHHHHcCCCCCCcchHHHHHhhhhhhcCchHHH
Confidence 579999999999999999888888999998888887543
No 82
>COG1288 Predicted membrane protein [Function unknown]
Probab=52.21 E-value=38 Score=26.30 Aligned_cols=53 Identities=23% Similarity=0.197 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhh-hhhccCCCc
Q psy18199 12 ILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNA-IIALHPGIL 65 (70)
Q Consensus 12 ~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nl-i~~~~~~~~ 65 (70)
+.-+.|+.+.+..+.|.|+..-...+-.++.+|...+- =||--. +.++..|++
T Consensus 158 aiaFypIliPv~ialGyDsi~~va~i~lgt~iG~~~St-~NPF~~~IAq~iAGip 211 (481)
T COG1288 158 AIAFYPILIPLMVALGYDSITGVAIIYIGTQIGFAAST-MNPFATVIAQNIAGIP 211 (481)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHhccchhhhh-cCchHHHHHhhhcCCc
Confidence 35678999999999999999988888889998554444 466555 444455543
No 83
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=45.65 E-value=22 Score=27.19 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=30.7
Q ss_pred eeccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhh
Q psy18199 4 INRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGG 45 (70)
Q Consensus 4 ~~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg 45 (70)
.|.|||+==-=++|++.+.+.+.|.+|... ++++-+|.
T Consensus 342 f~~snDAyYfGvlPIv~e~as~yGv~pv~~----A~AsiiGq 379 (433)
T COG2851 342 FFMSNDAYYFGVLPIVAEAASAYGVEPVEI----ARASIIGQ 379 (433)
T ss_pred EEecCcchhhhhHHHHHHHHHHcCCCHHHH----HHHHHhCC
Confidence 688999999999999999999999998654 44444443
No 84
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=44.95 E-value=42 Score=26.34 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhh
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~ 59 (70)
|||..-+++-|+=...|++.|.++..++-+-+.++..|-+ + .|+|+.+.
T Consensus 432 S~T~sN~lFg~lQ~~~A~~iG~s~~l~~AantvGg~~gkM---I-spqsIa~a 480 (522)
T COG1620 432 SNTSSNLLFGPLQQTTAEQIGLSPVLLVAANTVGGVMGKM---I-SPQSIAAA 480 (522)
T ss_pred cchHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhhhhccc---c-CHHHHHHH
Confidence 8999999999999999999999998877766666665444 2 56777654
No 85
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion]
Probab=43.48 E-value=11 Score=28.71 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhh
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAII 58 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~ 58 (70)
+|..+..++.|+...+++|.+.+++.+.=.+-.++.++.-+.|+++..=...
T Consensus 379 ~~~~si~i~gpia~~i~~~~~~~~~~l~~~l~~gg~~~~~~~Pws~~~i~~s 430 (485)
T COG1757 379 TSWGSIIIMGPIAKEIADKLGLHSKRLSRALEAGGTFGDHLSPWSDTTILSS 430 (485)
T ss_pred cceeeeeeeHHHHHHHHHHhCccHHHHHHHHHhcCeecCCCCCcchhHHHHH
Confidence 4667788999999999999999999876666667778888888877663333
No 86
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion]
Probab=42.24 E-value=25 Score=26.96 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCc
Q psy18199 12 ILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDP 53 (70)
Q Consensus 12 ~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p 53 (70)
..-|.-++=.++.++|++|.-+.++...++++|-.+.|+..-
T Consensus 371 f~AF~~lip~~Aa~lgi~~v~l~mpm~~As~igRt~SPisgV 412 (451)
T COG3069 371 FIAFVELIPKLAAGLGINPVYLIMPMLQASALGRTLSPVSGV 412 (451)
T ss_pred hhhHHhhcchhhhhcCCChHHHhhhHHHHHhhccccccccce
Confidence 344455555678899999999999999999999999998654
No 87
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=41.14 E-value=43 Score=24.19 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhcccc
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIV 50 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~Tpi 50 (70)
|..+++.+..+++ ..|.-+..-.+++.+++|+|+..|.+
T Consensus 186 SSsA~i~i~~~la-----~~G~i~~~~a~~lvlGaNiGT~~ta~ 224 (307)
T TIGR00704 186 SSSAAVLITATLT-----AAGIIGFPVALCLVLGSNLGSGILAM 224 (307)
T ss_pred HHHHHHHHHHHHH-----HCCCCCHHHHHHHHHhcchhHHHHHH
Confidence 5556666655554 45777888899999999999888764
No 88
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=38.42 E-value=82 Score=19.26 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHcCCCchH--HHHHHHHHHhhhhhccccCCchhh
Q psy18199 11 TILLMTPVTIRLCEVCELNPSP--ILMAMMIFSNIGGGASIVGDPPNA 56 (70)
Q Consensus 11 t~~im~Pi~i~ia~~~~~~~~~--lll~ia~aa~~Gg~~TpiG~p~Nl 56 (70)
...+.+|++++.-++.+.-|.+ .++++..+..+|....++-+..++
T Consensus 13 ~~~ii~~~lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l 60 (93)
T PF06946_consen 13 FLSIITPALVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNL 60 (93)
T ss_pred HHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccH
Confidence 4566788888999998864443 446677777776666555443333
No 89
>PF01832 Glucosaminidase: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; InterPro: IPR002901 This domain is found in many different proteins including mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (3.2.1.96 from EC).It is also found in flagellar protein J (P75942 from SWISSPROT), which has been shown to hydrolyse peptidoglycan [].; GO: 0004040 amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3FI7_A 2ZYC_A 3K3T_A.
Probab=36.14 E-value=1e+02 Score=18.66 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchh
Q psy18199 15 MTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPN 55 (70)
Q Consensus 15 m~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~N 55 (70)
|.|.++..+++.|++| .++++.+.-=+ |..-+-++...|
T Consensus 1 ~~~~~~~~~~~~gI~~-~~~laQa~lES-g~G~s~~a~~~n 39 (136)
T PF01832_consen 1 MAKAAIEAAKKYGIPP-SLILAQAILES-GWGTSRLAKEYN 39 (136)
T ss_dssp -HHHHHHHHHHCTS-H-HHHHHHHHHHH-TTTTTTTTSCTT
T ss_pred CHHHHHHHHHHhCCCH-HHHHHHHHHHh-cCCCCccccccc
Confidence 5788999999999999 56666665543 233333454444
No 90
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=34.80 E-value=62 Score=24.21 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhhhhhcccc
Q psy18199 17 PVTIRLCEVCELNPSPILMAMMIFSNIGGGASIV 50 (70)
Q Consensus 17 Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~Tpi 50 (70)
|+...+++..|++|...+.+..++.. .+.+|.
T Consensus 352 pIm~PLad~lGi~rq~~Vla~q~g~g--n~i~Pt 383 (433)
T PRK09412 352 KALMPLALALGVPPLTAIASFAAVSG--LFVLPT 383 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcc--CEECCC
Confidence 77777888999999998766666654 777775
No 91
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=34.75 E-value=1.1e+02 Score=24.00 Aligned_cols=45 Identities=9% Similarity=0.080 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhcccc
Q psy18199 6 RTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIV 50 (70)
Q Consensus 6 ~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~Tpi 50 (70)
.|..+=.+++.|+...+++..|++|.-..++--++-+.....||.
T Consensus 405 ~S~Sgkwal~aPI~vPm~~~lGisp~~t~~AyriGDs~tNiItP~ 449 (513)
T TIGR00819 405 ASASAIWAILAPIFVPMFMLAGFAPAFAQAAFRIADSSTLIIAPM 449 (513)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhchHHHhhccC
Confidence 477888899999999999999999999888888887776777775
No 92
>COG2056 Predicted permease [General function prediction only]
Probab=32.69 E-value=90 Score=23.96 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCch
Q psy18199 14 LMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPP 54 (70)
Q Consensus 14 im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~ 54 (70)
+..-+.+.+|.+.|++|......++.|+.+|=..+|-.+.+
T Consensus 362 IIA~iyVPLc~~lGFSp~ati~liG~AaALGDAGSPASDST 402 (444)
T COG2056 362 IIAAIYVPLCLKLGFSPLATIALIGTAAALGDAGSPASDST 402 (444)
T ss_pred HHHHHHHhHHHHhCCCHHHHHHHHHHHHHhcCCCCCcccCC
Confidence 33445566788999999999999999999988877755543
No 93
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=30.27 E-value=1.2e+02 Score=17.73 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH----HHhhhhhccccCCchh
Q psy18199 8 LVTTILLMTPVTIRLCEVCELNPSPILMAMMI----FSNIGGGASIVGDPPN 55 (70)
Q Consensus 8 N~at~~im~Pi~i~ia~~~~~~~~~lll~ia~----aa~~Gg~~TpiG~p~N 55 (70)
--.+.++.+|..++.+.-.|++|..-+....+ .+-+|+.--.+-.|.+
T Consensus 23 Gltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a 74 (84)
T PF13792_consen 23 GLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTA 74 (84)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHH
Confidence 34677889999999999999998754444433 3444444444444433
No 94
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=29.55 E-value=1.6e+02 Score=22.96 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhc
Q psy18199 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGA 47 (70)
Q Consensus 9 ~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~ 47 (70)
|+-...+.|+...+.++.|.+|..-+...-.+++ ||+.
T Consensus 138 daG~vvl~PL~a~if~a~Gr~PlaGia~~fagvs-~GFs 175 (513)
T TIGR00819 138 DAALVILIPLGALIFHALGRHPLAGLAAAFAGVG-CGFS 175 (513)
T ss_pred hhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHh-hhhh
Confidence 4455789999999999999999876554444444 4443
No 95
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.99 E-value=1.2e+02 Score=23.16 Aligned_cols=29 Identities=3% Similarity=0.101 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q psy18199 11 TILLMTPVTIRLCEVCELNPSPILMAMMI 39 (70)
Q Consensus 11 t~~im~Pi~i~ia~~~~~~~~~lll~ia~ 39 (70)
.+.+.+|+...++++.|+|...+-..++.
T Consensus 354 iafIivPllaPva~~lgIDliwfGVll~~ 382 (447)
T COG4664 354 IAFIIVPLLAPVADKLGIDLIWFGVLLGV 382 (447)
T ss_pred HHHHHHHhhHHHHHHcCCcHHHHHHHHHH
Confidence 46788999999999999998776544443
No 96
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=28.60 E-value=1.4e+02 Score=22.02 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=32.4
Q ss_pred cHHHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchh
Q psy18199 7 TLVTTI-LLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPN 55 (70)
Q Consensus 7 sN~at~-~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~N 55 (70)
+..++. ++.+|..+.+-+|.|.+|.-..-.++.++.+ -..|.|.+.+
T Consensus 78 ~sat~~~li~~~~l~P~l~~~G~~~~~aaavia~~~~l--~i~P~~~~~~ 125 (388)
T TIGR00771 78 TSASGLGMLLMVTLFPTLVSLGVSRLSAVAVMASPGSI--HSAMISEMSG 125 (388)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcc--cCCCcchHHH
Confidence 334444 8899999999999999987766444444443 6677766643
No 97
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=28.48 E-value=80 Score=23.90 Aligned_cols=46 Identities=9% Similarity=-0.104 Sum_probs=37.3
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhcccc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIV 50 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~Tpi 50 (70)
+.+|....++.-|+.-.+.||.|+++.++--.+--++...+.+-|+
T Consensus 363 ~~~~~~sil~~G~~~k~~~d~~~i~r~~LA~~ld~s~t~~~~LiPw 408 (454)
T TIGR00931 363 TCEQYLSILLPGKTFESFYTKLNLAKKNLSRTLEDAGTLVNPLIPW 408 (454)
T ss_pred HHhhhHHHHHhHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhHHHH
Confidence 3577888889999999999999999988777776666666666666
No 98
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=27.33 E-value=1.8e+02 Score=22.73 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhh
Q psy18199 9 VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNI 43 (70)
Q Consensus 9 ~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~ 43 (70)
|+--..+.|+...+.+..|.+|..-+...-.+++.
T Consensus 142 daGyVvl~PL~a~if~a~Gr~PlaGia~~fagvs~ 176 (508)
T PRK11339 142 DAALVIMPPMGALIFLAVGRHPVAGLLAAIAGVGC 176 (508)
T ss_pred hhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Confidence 45557899999999999999998765544444443
No 99
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=23.33 E-value=1.5e+02 Score=21.87 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhh
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIG 44 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~G 44 (70)
|+.|+++.+-++.+..-+|.|.++..-.=.++.++..|
T Consensus 109 S~~A~~a~~G~i~iP~M~k~GY~~~~A~av~aasgtlG 146 (416)
T PF06808_consen 109 SSVANAAAIGSITIPEMKKAGYPPEFAAAVIAASGTLG 146 (416)
T ss_pred chHhHHHHHHHHHHHHHHHcCCCHHHhHHHHhhccccc
Confidence 78899999999999999999999877666666666653
No 100
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=22.98 E-value=1.2e+02 Score=21.67 Aligned_cols=15 Identities=13% Similarity=-0.055 Sum_probs=12.7
Q ss_pred hhhhccCCCccccCC
Q psy18199 56 AIIALHPGILESVSR 70 (70)
Q Consensus 56 li~~~~~~~~~~~~~ 70 (70)
+..|.++||+++|.|
T Consensus 121 L~~WDPfGYnNMFPr 135 (249)
T PF04583_consen 121 LMFWDPFGYNNMFPR 135 (249)
T ss_pred HHhcCcccccccCCC
Confidence 457999999999976
No 101
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=22.80 E-value=25 Score=27.01 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.6
Q ss_pred HhhhhhccccCCchhhhhhccCCCcccc
Q psy18199 41 SNIGGGASIVGDPPNAIIALHPGILESV 68 (70)
Q Consensus 41 a~~Gg~~TpiG~p~Nli~~~~~~~~~~~ 68 (70)
-++||.+|....||=+++.+..|-+.+|
T Consensus 191 ISIGGtLT~fAAPPVLMVA~~w~Wd~~f 218 (438)
T PF07399_consen 191 ISIGGTLTSFAAPPVLMVASTWGWDSAF 218 (438)
T ss_pred eeecccccccccCcceeEecccCCChHH
Confidence 4789999999999999999888766543
No 102
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=22.08 E-value=1e+02 Score=23.72 Aligned_cols=33 Identities=9% Similarity=0.054 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHhhhhhcc
Q psy18199 16 TPVTIRLCEVCELNPSPILMAMMIFSNIGGGAS 48 (70)
Q Consensus 16 ~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~T 48 (70)
-|+++.-++++|.|+.+..++.+++-..-.+.-
T Consensus 381 gP~~~~Aa~~Lgv~~~~~~ma~a~Gda~tNmiQ 413 (453)
T PF02667_consen 381 GPIVMPAAQALGVDLGKTVMAYAWGDAWTNMIQ 413 (453)
T ss_pred cchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999976544433
No 103
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion]
Probab=21.79 E-value=2.3e+02 Score=21.62 Aligned_cols=53 Identities=13% Similarity=-0.022 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhh
Q psy18199 7 TLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59 (70)
Q Consensus 7 sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~ 59 (70)
+-..+....-|....+++.++.++-...=++..+|-+|.-+.|+-+.+|+-..
T Consensus 138 ts~gt~~t~~~~l~~I~~~~gap~~l~agai~~GAyfgd~ispisdTt~~aa~ 190 (485)
T COG1757 138 TSWGTAATSGPALAGIGDSTGAPLALTAGAILSGAYFGDKISPLSDTTILAAG 190 (485)
T ss_pred cchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhHhHHHHHHHhc
Confidence 44567788899999999999999888888888999999999999888887443
No 104
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=21.57 E-value=79 Score=19.95 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.2
Q ss_pred CCchHHHHHHHHHHhhhhhccccCCch
Q psy18199 28 LNPSPILMAMMIFSNIGGGASIVGDPP 54 (70)
Q Consensus 28 ~~~~~lll~ia~aa~~Gg~~TpiG~p~ 54 (70)
.+-..++..+..++.+|+.+.+...|-
T Consensus 2 m~~~~~l~G~liGgiiGa~aaLL~AP~ 28 (115)
T COG4980 2 MKGKDFLFGILIGGIIGAAAALLFAPK 28 (115)
T ss_pred CccchHHHHHHHHHHHHHHHHHHhCCc
Confidence 455678999999999999988887774
Done!