Query psy18199
Match_columns 70
No_of_seqs 114 out of 1034
Neff 6.2
Searched_HMMs 29240
Date Sat Aug 17 01:20:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f35_D Transporter, NADC famil 99.1 6.1E-11 2.1E-15 85.1 6.2 60 5-65 362-421 (449)
2 4f35_D Transporter, NADC famil 99.1 2E-11 7E-16 87.5 2.0 61 5-65 135-200 (449)
3 2zyc_A Peptidoglycan hydrolase 9.8 2.2E+02 0.0076 17.7 2.6 28 14-42 8-35 (170)
4 2nwl_A GLTPH, glutamate sympor 8.5 2.6E+02 0.009 19.8 2.9 31 15-45 281-313 (422)
5 4fdy_A Similar to lipoprotein, 7.9 3.5E+02 0.012 18.5 3.2 29 14-42 28-57 (313)
6 4b4a_A TATC, SEC-independent p 6.4 6.1E+02 0.021 16.6 4.4 42 15-58 165-211 (249)
7 2kv5_A FST, putative uncharact 6.1 3.1E+02 0.011 12.9 2.3 14 12-25 6-19 (33)
8 2o3f_A Putative HTH-type trans 4.5 3.8E+02 0.013 15.0 1.6 14 17-30 54-67 (111)
9 1tc3_C Protein (TC3 transposas 4.4 3.5E+02 0.012 11.5 1.5 11 21-31 26-36 (51)
10 2hp0_A IDS-epimerase; MMGE/PRP 4.4 9.1E+02 0.031 17.2 3.8 27 14-40 123-149 (466)
No 1
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=99.14 E-value=6.1e-11 Score=85.06 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=56.9
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
|.||++++++++|++..++++.|.+|..+.++++++++. +++||+|+|+|.++++.++++
T Consensus 362 f~sn~a~~~~l~Pi~~~~a~~~g~~p~~~~~~~~~~~s~-~~~~p~~t~~n~i~~g~g~~~ 421 (449)
T 4f35_D 362 FASNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAASC-AFMLPVATPPNAIVFASGHIK 421 (449)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHC-CCSSSSSSHHHHHHCSSGGGG
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HhHhhhhhHHHHHHHhcCCCC
Confidence 679999999999999999999999999999999999996 799999999999999988765
No 2
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=99.10 E-value=2e-11 Score=87.53 Aligned_cols=61 Identities=28% Similarity=0.440 Sum_probs=55.3
Q ss_pred eccHHHHHHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHhhhhhccccCCchhhhhhccCCCc
Q psy18199 5 NRTLVTTILLMTPVTIRLCEVCELNPS-----PILMAMMIFSNIGGGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 5 ~~sN~at~~im~Pi~i~ia~~~~~~~~-----~lll~ia~aa~~Gg~~TpiG~p~Nli~~~~~~~~ 65 (70)
+.||+++++++.|++.+++++.+.++. .+++++++++++||.+|++|+|+|++..+..+++
T Consensus 135 ~isn~a~~~~~~Pi~~~i~~~~~~~~~~~~~~~lll~~~~aa~igg~~t~ig~~~N~i~~~~~~~~ 200 (449)
T 4f35_D 135 WISNTATAAMMLPLVLGVLSKVDADKQRSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLS 200 (449)
T ss_dssp HSCSHHHHHHHHHHHHHHSCSCCCSSCCSSTTTTHHHHHHHHHHHHSSSSSSSHHHHHHHHHHTCC
T ss_pred HhcchHHHHHhchHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhhcccCcCCCccccccccccc
Confidence 469999999999999999999998874 5899999999999999999999999988766654
No 3
>2zyc_A Peptidoglycan hydrolase FLGJ; 1.74A {Sphingomonas SP} PDB: 3k3t_A
Probab=9.85 E-value=2.2e+02 Score=17.66 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHh
Q psy18199 14 LMTPVTIRLCEVCELNPSPILMAMMIFSN 42 (70)
Q Consensus 14 im~Pi~i~ia~~~~~~~~~lll~ia~aa~ 42 (70)
-+.|.+...+++.|++++ ++++.+.-=+
T Consensus 8 ~~~~~A~~~~~~~gI~~s-v~lAQA~LES 35 (170)
T 2zyc_A 8 ATWPQAAKAAQSLGVPAH-FLVAQAALET 35 (170)
T ss_dssp HHHHHHHHHHHHHTSCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHH-HHHHHHHHHc
Confidence 467999999999999875 4555555533
No 4
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=8.54 E-value=2.6e+02 Score=19.83 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCCch--HHHHHHHHHHhhhh
Q psy18199 15 MTPVTIRLCEVCELNPS--PILMAMMIFSNIGG 45 (70)
Q Consensus 15 m~Pi~i~ia~~~~~~~~--~lll~ia~aa~~Gg 45 (70)
-+|+.++-++|.|.+++ .+.+|+++.-|..|
T Consensus 281 tLPv~m~~~~~lGv~~~i~~fvlPlGatinmdG 313 (422)
T 2nwl_A 281 TLPVTMRVAKEMGISEGIYSFTLPLGATINMDG 313 (422)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHHcCcCcceeeEEeechhhhCCCc
Confidence 36999999999999875 45555554444433
No 5
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=7.93 E-value=3.5e+02 Score=18.48 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCCch-HHHHHHHHHHh
Q psy18199 14 LMTPVTIRLCEVCELNPS-PILMAMMIFSN 42 (70)
Q Consensus 14 im~Pi~i~ia~~~~~~~~-~lll~ia~aa~ 42 (70)
=.-|++-..|++.|+++. .+++++...=+
T Consensus 28 ~y~~~v~~~a~~~~v~~~~~li~Aii~~ES 57 (313)
T 4fdy_A 28 AHRPLIEKYGKEYGIEDYVSYILAIMQVES 57 (313)
T ss_dssp TTHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHhc
Confidence 356889999999999996 88888887755
No 6
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=6.36 E-value=6.1e+02 Score=16.58 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCCchHHH-----HHHHHHHhhhhhccccCCchhhhh
Q psy18199 15 MTPVTIRLCEVCELNPSPIL-----MAMMIFSNIGGGASIVGDPPNAII 58 (70)
Q Consensus 15 m~Pi~i~ia~~~~~~~~~ll-----l~ia~aa~~Gg~~TpiG~p~Nli~ 58 (70)
-+|+++-...+.|+-....+ ..+-..--+++..|| ++-+.++
T Consensus 165 elPvi~~~L~~~Giv~~~~l~~~Rr~~iv~~~v~aAiiTP--D~~sq~l 211 (249)
T 4b4a_A 165 EMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAIIAP--DVSTQVL 211 (249)
T ss_dssp SHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCS--SHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHhHHHHHHHHHHHHHHCC--cHHHHHH
Confidence 36888888888887643222 222223334568899 8876654
No 7
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=6.14 E-value=3.1e+02 Score=12.93 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH
Q psy18199 12 ILLMTPVTIRLCEV 25 (70)
Q Consensus 12 ~~im~Pi~i~ia~~ 25 (70)
..+..|+++++..+
T Consensus 6 ~~IIaPivVGvvl~ 19 (33)
T 2kv5_A 6 SLVIAPIFVGLVLE 19 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677888887654
No 8
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=4.54 E-value=3.8e+02 Score=15.01 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCCc
Q psy18199 17 PVTIRLCEVCELNP 30 (70)
Q Consensus 17 Pi~i~ia~~~~~~~ 30 (70)
+-+.+.|+++|.+-
T Consensus 54 aTv~Rf~kklG~~g 67 (111)
T 2o3f_A 54 AAVIRLCXSLGLKG 67 (111)
T ss_dssp HHHHHHHHHTTCSS
T ss_pred HHHHHHHHHcCCCC
Confidence 34678999999883
No 9
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=4.43 E-value=3.5e+02 Score=11.48 Aligned_cols=11 Identities=0% Similarity=-0.037 Sum_probs=6.5
Q ss_pred HHHHHcCCCch
Q psy18199 21 RLCEVCELNPS 31 (70)
Q Consensus 21 ~ia~~~~~~~~ 31 (70)
.+|+++|++..
T Consensus 26 ~IA~~lgis~~ 36 (51)
T 1tc3_C 26 EMSRKISRSRH 36 (51)
T ss_dssp HHHHHHTCCHH
T ss_pred HHHHHHCcCHH
Confidence 45666666643
No 10
>2hp0_A IDS-epimerase; MMGE/PRPD fold, 6 helix bundle, chorismate mutase like, ISOM; HET: MSE CSO; 1.50A {Agrobacterium tumefaciens} PDB: 2hp3_A*
Probab=4.38 E-value=9.1e+02 Score=17.18 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy18199 14 LMTPVTIRLCEVCELNPSPILMAMMIF 40 (70)
Q Consensus 14 im~Pi~i~ia~~~~~~~~~lll~ia~a 40 (70)
..+|-++.+++..+.+-+.++-++..+
T Consensus 123 ~vvpa~LA~Ae~~~~sG~~lL~A~v~G 149 (466)
T 2hp0_A 123 SLVPAIFAVGEHVGANGHNCLKSYVLG 149 (466)
T ss_dssp HHHHHHHHHHHHHTCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 468999999999988877777666554
Done!