Query psy18199
Match_columns 70
No_of_seqs 114 out of 1034
Neff 6.2
Searched_HMMs 13730
Date Sat Aug 17 01:20:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18199.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/18199hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2croa_ a.35.1.2 (A:) cro 434 7.7 1.3E+02 0.0093 13.8 2.1 15 20-34 48-62 (65)
2 d2cvza1 a.100.1.1 (A:158-289) 6.8 1.4E+02 0.01 15.8 2.1 20 19-38 25-44 (132)
3 d1w85i_ a.9.1.1 (I:) E3/E1 bin 6.4 1.5E+02 0.011 13.3 2.0 16 16-31 5-20 (42)
4 d1wo8a1 c.24.1.2 (A:1-126) Met 6.2 57 0.0042 17.9 0.1 8 2-9 75-82 (126)
5 d5mdha1 c.2.1.5 (A:1-154) Mala 5.6 58 0.0042 18.0 -0.1 21 45-65 123-143 (154)
6 d3cuma1 a.100.1.1 (A:163-296) 5.6 1.8E+02 0.013 15.2 2.1 24 18-41 25-48 (134)
7 d1vpda1 a.100.1.1 (A:164-296) 5.5 1.8E+02 0.013 15.3 2.1 21 18-38 25-45 (133)
8 d2cpga_ a.43.1.3 (A:) Transcri 5.3 1.6E+02 0.012 13.4 1.5 16 19-34 17-32 (43)
9 d1b0na2 a.35.1.3 (A:1-68) SinR 5.1 1.9E+02 0.014 13.2 2.5 12 20-31 48-59 (68)
10 d2nwwa1 f.49.1.1 (A:12-416) Pr 5.0 76 0.0056 20.3 0.2 16 16-31 271-286 (405)
No 1
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=7.68 E-value=1.3e+02 Score=13.84 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=8.8
Q ss_pred HHHHHHcCCCchHHH
Q psy18199 20 IRLCEVCELNPSPIL 34 (70)
Q Consensus 20 i~ia~~~~~~~~~ll 34 (70)
..+|+.+|+++..++
T Consensus 48 ~~ia~~l~v~~~~Ll 62 (65)
T d2croa_ 48 FEIAMALNCDPVWLQ 62 (65)
T ss_dssp HHHHHHTTSCHHHHH
T ss_pred HHHHHHhCCCHHHHh
Confidence 456666666665554
No 2
>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=6.83 E-value=1.4e+02 Score=15.76 Aligned_cols=20 Identities=5% Similarity=-0.094 Sum_probs=15.2
Q ss_pred HHHHHHHcCCCchHHHHHHH
Q psy18199 19 TIRLCEVCELNPSPILMAMM 38 (70)
Q Consensus 19 ~i~ia~~~~~~~~~lll~ia 38 (70)
++.++++.|+++..++=.+.
T Consensus 25 al~la~~~Gld~~~~~~vl~ 44 (132)
T d2cvza1 25 GLLALVKQGVSAEKALEVIN 44 (132)
T ss_dssp HHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 46779999999988765443
No 3
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.38 E-value=1.5e+02 Score=13.28 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCCch
Q psy18199 16 TPVTIRLCEVCELNPS 31 (70)
Q Consensus 16 ~Pi~i~ia~~~~~~~~ 31 (70)
.|.+=.++++.|++..
T Consensus 5 sP~arkla~e~gidl~ 20 (42)
T d1w85i_ 5 MPSVRKYAREKGVDIR 20 (42)
T ss_dssp CHHHHHHHHHTTCCTT
T ss_pred CHHHHHHHHHcCCCHH
Confidence 4888889999988754
No 4
>d1wo8a1 c.24.1.2 (A:1-126) Methylglyoxal synthase, MgsA {Thermus thermophilus [TaxId: 274]}
Probab=6.22 E-value=57 Score=17.88 Aligned_cols=8 Identities=13% Similarity=-0.238 Sum_probs=4.8
Q ss_pred eeeeccHH
Q psy18199 2 LVINRTLV 9 (70)
Q Consensus 2 ~~~~~sN~ 9 (70)
+|||+.|+
T Consensus 75 lVIn~~~~ 82 (126)
T d1wo8a1 75 AVVFLQDP 82 (126)
T ss_dssp EEEEECCT
T ss_pred EEEEecCC
Confidence 56766654
No 5
>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.59 E-value=58 Score=18.00 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=14.2
Q ss_pred hhccccCCchhhhhhccCCCc
Q psy18199 45 GGASIVGDPPNAIIALHPGIL 65 (70)
Q Consensus 45 g~~TpiG~p~Nli~~~~~~~~ 65 (70)
+..-.++||.|.+.+-..+++
T Consensus 123 ~~iivvsNPvD~mt~v~~k~s 143 (154)
T d5mdha1 123 VKVIVVGNPANTNCLTASKSA 143 (154)
T ss_dssp CEEEECSSSHHHHHHHHHHTC
T ss_pred eEEEEecCcHHHHHHHHHHHc
Confidence 344567999999876655444
No 6
>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.55 E-value=1.8e+02 Score=15.24 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=17.5
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHH
Q psy18199 18 VTIRLCEVCELNPSPILMAMMIFS 41 (70)
Q Consensus 18 i~i~ia~~~~~~~~~lll~ia~aa 41 (70)
=++.++++.|+++..++=.+.-++
T Consensus 25 Eal~la~~~Gld~~~~~eil~~~~ 48 (134)
T d3cuma1 25 EAMALGVANGLEAKVLAEIMRRSS 48 (134)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHTST
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcc
Confidence 356778999999988876655443
No 7
>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}
Probab=5.53 E-value=1.8e+02 Score=15.29 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCchHHHHHHH
Q psy18199 18 VTIRLCEVCELNPSPILMAMM 38 (70)
Q Consensus 18 i~i~ia~~~~~~~~~lll~ia 38 (70)
=++.++++.|+++..++=.+.
T Consensus 25 Eal~la~~~Gid~~~~~~~l~ 45 (133)
T d1vpda1 25 EALTLATKAGVNPDLVYQAIR 45 (133)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 356678899999988765544
No 8
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
Probab=5.30 E-value=1.6e+02 Score=13.35 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=11.8
Q ss_pred HHHHHHHcCCCchHHH
Q psy18199 19 TIRLCEVCELNPSPIL 34 (70)
Q Consensus 19 ~i~ia~~~~~~~~~ll 34 (70)
.-.++++.|++.+.++
T Consensus 17 lek~a~e~g~sksa~~ 32 (43)
T d2cpga_ 17 LEKMAREMGLSKSAMI 32 (43)
T ss_dssp HHHHHHHHTCCHHHHH
T ss_pred HHHHHHHcCccHHHHH
Confidence 3467899999887654
No 9
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=5.14 E-value=1.9e+02 Score=13.20 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=5.3
Q ss_pred HHHHHHcCCCch
Q psy18199 20 IRLCEVCELNPS 31 (70)
Q Consensus 20 i~ia~~~~~~~~ 31 (70)
..+|+.+++++.
T Consensus 48 ~~ia~~l~v~~~ 59 (68)
T d1b0na2 48 EKVSAVLDVSVH 59 (68)
T ss_dssp HHHHHHHTCCHH
T ss_pred HHHHHHHCCcHH
Confidence 344444444433
No 10
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.04 E-value=76 Score=20.35 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCCch
Q psy18199 16 TPVTIRLCEVCELNPS 31 (70)
Q Consensus 16 ~Pi~i~ia~~~~~~~~ 31 (70)
+|+.++-+||.|.+++
T Consensus 271 lP~~~~~~~~~gv~~~ 286 (405)
T d2nwwa1 271 LPVTMRVAKEMGISEG 286 (405)
T ss_dssp HHHHHHHHHTTTCCTT
T ss_pred cHHHHHHHHHcCCCcc
Confidence 5999999999998863
Done!