RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy18199
         (70 letters)



>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution). Mutations in
           the human melanosomal P gene were responsible for
           classic phenotype of oculocutaneous albinism type 2
           (OCA2). Although the precise function of the P protein
           is unknown, it was predicted to regulate the
           intraorganelle pH, together with the ATP-driven proton
           pump. It shows significant sequence similarity to the
           Na+/H+ antiporter NhaD from Vibrio parahaemolyticus.
           Both proteins belong to ArsB/NhaD superfamily of
           permeases that translocate sodium, arsenate, sulfate,
           and organic anions across biological membranes in all
           three kingdoms of life.  A typical ArsB/NhaD permease
           contains 8-13 transmembrane domains.
          Length = 413

 Score = 69.2 bits (170), Expect = 7e-16
 Identities = 32/51 (62%), Positives = 42/51 (82%)

Query: 9   VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59
           VTT+LLM PVTIRLCEV  LNP P+L++ +I +NIGG A+++GDPPN +I 
Sbjct: 105 VTTVLLMVPVTIRLCEVLGLNPVPVLISEVIAANIGGAATLIGDPPNIMIG 155


>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite
           permeases [Inorganic ion transport and metabolism].
          Length = 424

 Score = 53.8 bits (130), Expect = 2e-10
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query: 9   VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64
            TT LL+TP+ + +     +NP P L+A +  +NIGG A+ VGDPPN IIA   GI
Sbjct: 114 DTTALLLTPIVLAVARALGVNPVPFLIAEVFIANIGGLATPVGDPPNIIIASAAGI 169


>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter. 
          Length = 377

 Score = 49.6 bits (119), Expect = 8e-09
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 9   VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59
           +TT+L+ TP  + L +   L P  +L A+ + +NIGG  +  G P N   A
Sbjct: 111 LTTVLIATPAALPLYKRLNLPPRLLLGAIALGANIGGMLTPWGGPQNRAAA 161


>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD.  These
           permeases have been shown to translocate sodium,
           arsenate, antimonite, sulfate and organic anions across
           biological membranes in all three kingdoms of life.  A
           typical anion permease contains 8-13 transmembrane
           helices and can function either independently as a
           chemiosmotic transporter or as a channel-forming subunit
           of an ATP-driven anion pump.
          Length = 396

 Score = 47.6 bits (114), Expect = 3e-08
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 9   VTTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59
            T +LL   V   L ++    P P+L+A+   +NIGG A+ +G+PPN IIA
Sbjct: 97  ATAVLLTPIVLALLRKLGLSPPVPLLLALAFAANIGGAATPIGNPPNLIIA 147


>gnl|CDD|238537 cd01117, YbiR_permease, Putative anion permease YbiR.  Based on
           sequence similarity, YbiR proteins are predicted to
           function as anion translocating permeases in eubacteria,
           archaea and plants. They belong to ArsB/NhaD superfamily
           of permeases that have been shown to translocate sodium,
           sulfate, arsenite and organic anions. A typical
           ArsB/NhaD permease is composed of 8-13 transmembrane
           domains.
          Length = 384

 Score = 44.2 bits (105), Expect = 5e-07
 Identities = 22/55 (40%), Positives = 33/55 (60%)

Query: 10  TTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64
           T  L+ TP+ + L  V  L P P+L+A+   +NIG  A+ +G+P N +IA   GI
Sbjct: 99  TACLVFTPIVLELARVAGLPPIPLLLALATAANIGSAATPIGNPQNLLIASESGI 153


>gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13).  The
           sodium/dicarboxylate cotransporter NaDC-1 has been shown
           to translocate Krebs cycle intermediates such as
           succinate, citrate, and alpha-ketoglutarate across
           plasma membranes rabbit, human, and rat kidney. It is
           related to renal and intestinal Na+/sulfate
           cotransporters and a few putative bacterial permeases.
           The SLC13-type proteins belong to the ArsB/NhaD
           superfamily of permeases that translocate sodium and
           various anions across biological membranes in all three
           kingdoms of life. A typical ArsB/NhaD permease is
           composed of 8-13 transmembrane helices.
          Length = 382

 Score = 31.8 bits (73), Expect = 0.014
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 11  TILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAII 58
           T+ +M PV + L    +++PS +LM +   ++IGG  +++G PPN + 
Sbjct: 106 TVAIMLPVALGLAAKLDISPSRLLMPLAFAASIGGMLTLIGTPPNLVA 153


>gnl|CDD|215070 PLN00136, PLN00136, silicon transporter; Provisional.
          Length = 482

 Score = 30.7 bits (69), Expect = 0.038
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 10  TTILLMTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGI 64
           T  +++T   + L     L   P L+A+   +NIG  A+ +G+P N +IA +  I
Sbjct: 121 TCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATPIGNPQNLVIAFNSKI 175


>gnl|CDD|234549 TIGR04332, gamma_Glu_sys, poly-gamma-glutamate system protein.
           Poly(gamma-glutamic acid), or PGA, is an extracellular
           structural polymer found in Bacillus subtilis and a
           number of other species. PGA is sometimes
           capsule-forming, sometimes secretory, and may be
           produced by Gram-positive (single plasma membrane) and
           Gram-negative (inner and outer membranes), so export
           and/or attachment machinery may differ from system to
           system. Members of this family occur in a subset of PGA
           operons, in lineages that include Francisella,
           Leptospira, Treponema, Thermotoga, Fusobacterium, and
           Clostridium, among others. Because gene symbols pgsWXYZ
           are not yet in use, we suggest pgsW, as one of a series
           of poly-gamma-glutamate synthesis auxiliary proteins.
          Length = 307

 Score = 26.4 bits (59), Expect = 1.0
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 40  FSNIGGGASIVGDPPNAIIALHPGIL 65
           F NIGG  + +G  P  ++ L PG+L
Sbjct: 236 FVNIGGSLANLGTSP-EVLKLPPGLL 260


>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 25.4 bits (55), Expect = 2.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 24  EVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPGILES 67
           +V  ++P P L  M ++ N+  G  IVG  P   I     I+ES
Sbjct: 89  QVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI---DDIVES 129


>gnl|CDD|184152 PRK13571, PRK13571, anthranilate synthase component I; Provisional.
          Length = 506

 Score = 25.0 bits (55), Expect = 4.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 28  LNPSPILMAMMIFSNIGGGA--SIVGDPPNAIIALHPG 63
            NPSP  M ++   N  GG   SIVG  P A++ +  G
Sbjct: 275 TNPSP-YMYLLRVPNSDGGTDFSIVGSSPEALVTVTDG 311


>gnl|CDD|188336 TIGR03535, DapD_actino,
           2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
           N-succinyltransferase.  This enzyme is part of the
           diaminopimelate pathway of lysine biosynthesis. This
           model represents a clade of the enzyme specific to
           Actinobacteria. Alternate name: tetrahydrodipicolinate
           N-succinyltransferase.
          Length = 319

 Score = 24.3 bits (53), Expect = 5.5
 Identities = 9/11 (81%), Positives = 11/11 (100%)

Query: 41  SNIGGGASIVG 51
           S+IGGGASI+G
Sbjct: 206 SDIGGGASIMG 216


>gnl|CDD|223687 COG0614, FepB, ABC-type Fe3+-hydroxamate transport system,
          periplasmic component [Inorganic ion transport and
          metabolism].
          Length = 319

 Score = 24.5 bits (53), Expect = 6.2
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 10 TTILLMTPVTIRLCEVC------ELNPSPILMAMMIFSNIGGGASIVGDPPNAIIALHPG 63
            ++L+  + + L   C       ++ S         ++  G    +  PP  I++L P 
Sbjct: 2  IKLILLLLLLLLLLSACASNSSSAVSSSSASAEARTVTDALGRTVTIPAPPERIVSLGPS 61

Query: 64 ILE 66
            E
Sbjct: 62 ATE 64


>gnl|CDD|226977 COG4630, XdhA, Xanthine dehydrogenase, iron-sulfur cluster and
           FAD-binding subunit A [Nucleotide transport and
           metabolism].
          Length = 493

 Score = 23.9 bits (52), Expect = 7.5
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 42  NIGGGASIVGDPPNAIIAL 60
           NI  G+ I GD P A+IAL
Sbjct: 310 NIANGSPI-GDTPPALIAL 327


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0824    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,583,213
Number of extensions: 276174
Number of successful extensions: 394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 36
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.0 bits)