RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy18199
         (70 letters)



>1vi4_A Regulator of ribonuclease acivity A protein 1; structural
          genomics, unknown function; 1.87A {Vibrio cholerae}
          SCOP: c.8.7.1
          Length = 174

 Score = 23.7 bits (52), Expect = 5.6
 Identities = 6/37 (16%), Positives = 16/37 (43%)

Query: 15 MTPVTIRLCEVCELNPSPILMAMMIFSNIGGGASIVG 51
          M+ +     ++C+   S + +  +   N G  ++  G
Sbjct: 1  MSLMRDITPDLCDKYESQVTLLNLPLQNFGQRSAFWG 37


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0789    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,064,955
Number of extensions: 51771
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)