RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18199
         (70 letters)



>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant
          x100 [TaxId: 105351]}
          Length = 472

 Score = 25.8 bits (56), Expect = 0.36
 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query: 39 IFSNIGG-GASIVGDPPNAIIA 59
          I +NIG  GA + G     ++A
Sbjct: 18 ILNNIGADGAWVSGADSGIVVA 39


>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus
           [TaxId: 274]}
          Length = 406

 Score = 25.8 bits (56), Expect = 0.41
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 17  PVTIRLCEVC-ELNPSPILMAMMIFSNI 43
               RL EV      +PI    ++F + 
Sbjct: 307 EGARRLGEVALVPADNPIAKTGLVFFDT 334


>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB),
          core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
          Length = 98

 Score = 22.1 bits (47), Expect = 6.5
 Identities = 6/39 (15%), Positives = 13/39 (33%)

Query: 21 RLCEVCELNPSPILMAMMIFSNIGGGASIVGDPPNAIIA 59
          R+    +L       A  ++        I G    +++A
Sbjct: 11 RITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMA 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 251,872
Number of extensions: 8731
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 3
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)