Query psy1820
Match_columns 149
No_of_seqs 116 out of 1647
Neff 10.1
Searched_HMMs 46136
Date Sat Aug 17 01:22:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 1.7E-22 3.6E-27 131.2 14.2 124 14-147 34-159 (160)
2 KOG0034|consensus 99.9 7.6E-22 1.6E-26 132.1 13.2 129 7-147 47-178 (187)
3 KOG0038|consensus 99.9 2.2E-21 4.7E-26 122.2 10.7 133 4-148 49-181 (189)
4 KOG0027|consensus 99.9 9.1E-21 2E-25 124.3 13.8 121 15-145 23-150 (151)
5 PTZ00183 centrin; Provisional 99.8 1E-18 2.2E-23 115.0 14.8 129 13-148 30-158 (158)
6 KOG0028|consensus 99.8 8.3E-19 1.8E-23 112.1 13.2 126 11-146 44-172 (172)
7 KOG0044|consensus 99.8 9.8E-19 2.1E-23 117.3 10.7 133 13-147 40-178 (193)
8 PTZ00184 calmodulin; Provision 99.8 1.4E-17 3E-22 108.5 13.9 125 13-144 24-148 (149)
9 KOG0031|consensus 99.7 2E-16 4.3E-21 100.7 14.1 122 12-144 44-165 (171)
10 KOG0037|consensus 99.7 2E-16 4.4E-21 106.2 12.8 122 10-144 67-188 (221)
11 KOG0030|consensus 99.7 6.4E-16 1.4E-20 96.8 11.9 121 13-144 24-151 (152)
12 PF13499 EF-hand_7: EF-hand do 99.6 1.7E-14 3.6E-19 81.7 8.3 66 76-142 1-66 (66)
13 KOG0036|consensus 99.5 9.1E-13 2E-17 96.1 12.3 125 12-148 26-150 (463)
14 cd05022 S-100A13 S-100A13: S-1 99.5 3.4E-13 7.3E-18 80.3 7.3 65 75-144 8-75 (89)
15 COG5126 FRQ1 Ca2+-binding prot 99.4 8.5E-12 1.8E-16 81.4 11.7 100 39-144 21-120 (160)
16 KOG0027|consensus 99.4 7.9E-12 1.7E-16 81.9 10.8 102 39-145 9-114 (151)
17 cd05027 S-100B S-100B: S-100B 99.4 3.8E-12 8.1E-17 75.9 8.1 64 76-144 9-79 (88)
18 PTZ00183 centrin; Provisional 99.4 2.2E-11 4.8E-16 80.0 12.0 100 40-144 19-118 (158)
19 PTZ00184 calmodulin; Provision 99.4 3.1E-11 6.7E-16 78.4 11.8 100 40-144 13-112 (149)
20 KOG0044|consensus 99.3 3.1E-11 6.8E-16 81.3 11.2 90 50-144 39-128 (193)
21 cd05029 S-100A6 S-100A6: S-100 99.3 3.1E-11 6.7E-16 71.9 7.8 64 76-144 11-79 (88)
22 cd05026 S-100Z S-100Z: S-100Z 99.3 4.6E-11 1E-15 72.0 8.0 65 76-144 11-81 (93)
23 cd05031 S-100A10_like S-100A10 99.3 4.3E-11 9.3E-16 72.3 7.9 66 75-144 8-79 (94)
24 cd05025 S-100A1 S-100A1: S-100 99.3 5.6E-11 1.2E-15 71.5 8.1 66 75-144 9-80 (92)
25 KOG4223|consensus 99.2 2.9E-11 6.2E-16 85.9 6.3 123 3-140 172-301 (325)
26 PF13833 EF-hand_8: EF-hand do 99.2 1.4E-10 3E-15 62.9 6.7 52 88-144 1-53 (54)
27 cd00213 S-100 S-100: S-100 dom 99.2 2.6E-10 5.6E-15 68.1 7.7 67 74-144 7-79 (88)
28 PLN02964 phosphatidylserine de 99.2 3.5E-10 7.6E-15 88.4 10.4 98 39-145 144-244 (644)
29 smart00027 EH Eps15 homology d 99.2 3.4E-10 7.3E-15 68.7 8.0 64 74-144 9-72 (96)
30 cd00052 EH Eps15 homology doma 99.2 2.9E-10 6.2E-15 64.2 7.2 60 78-144 2-61 (67)
31 cd00051 EFh EF-hand, calcium b 99.1 6E-10 1.3E-14 61.3 8.1 61 77-142 2-62 (63)
32 cd05023 S-100A11 S-100A11: S-1 99.1 1E-09 2.2E-14 65.5 8.0 66 75-144 9-80 (89)
33 KOG0028|consensus 99.1 4.6E-09 9.9E-14 67.8 10.4 100 40-144 35-134 (172)
34 KOG4223|consensus 99.1 1.7E-09 3.8E-14 77.0 9.2 127 11-146 88-230 (325)
35 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.5E-09 5.4E-14 66.7 7.8 62 74-144 47-108 (116)
36 PF14658 EF-hand_9: EF-hand do 99.0 3.5E-09 7.7E-14 58.8 6.9 62 79-144 2-64 (66)
37 PLN02964 phosphatidylserine de 99.0 6.8E-09 1.5E-13 81.3 11.1 81 22-103 161-243 (644)
38 KOG2643|consensus 99.0 2.3E-09 5.1E-14 79.1 7.4 137 3-144 242-453 (489)
39 PF13499 EF-hand_7: EF-hand do 99.0 2.8E-09 6.1E-14 60.0 6.1 62 40-101 2-66 (66)
40 cd05030 calgranulins Calgranul 99.0 4.9E-09 1.1E-13 62.5 7.1 65 76-144 9-79 (88)
41 KOG4666|consensus 98.9 5.1E-09 1.1E-13 74.8 6.2 103 40-148 261-363 (412)
42 KOG0037|consensus 98.8 1.6E-07 3.5E-12 63.7 10.3 96 38-144 57-152 (221)
43 KOG0377|consensus 98.7 1.8E-07 4E-12 69.5 10.5 65 75-143 547-614 (631)
44 KOG0034|consensus 98.7 3.1E-07 6.7E-12 61.9 10.8 92 43-144 38-132 (187)
45 PF00036 EF-hand_1: EF hand; 98.6 5E-08 1.1E-12 45.7 3.4 27 77-103 2-28 (29)
46 KOG0031|consensus 98.6 4.1E-07 8.8E-12 58.6 8.4 68 76-144 33-129 (171)
47 KOG2643|consensus 98.6 1.3E-07 2.8E-12 70.1 6.5 90 50-144 211-314 (489)
48 PF13833 EF-hand_8: EF-hand do 98.6 3E-07 6.6E-12 49.5 6.5 51 52-103 2-53 (54)
49 KOG0041|consensus 98.6 4.9E-07 1.1E-11 60.7 7.9 65 75-144 99-163 (244)
50 cd00051 EFh EF-hand, calcium b 98.6 6.2E-07 1.4E-11 48.9 7.0 60 41-101 3-62 (63)
51 cd05022 S-100A13 S-100A13: S-1 98.5 8.2E-07 1.8E-11 52.9 7.4 66 39-104 9-76 (89)
52 cd05024 S-100A10 S-100A10: A s 98.5 1.4E-06 3E-11 51.8 8.1 63 76-143 9-75 (91)
53 PF00036 EF-hand_1: EF hand; 98.5 3E-07 6.6E-12 43.0 4.0 25 120-144 4-28 (29)
54 cd05027 S-100B S-100B: S-100B 98.5 1.9E-06 4.1E-11 51.3 8.0 66 39-104 9-80 (88)
55 cd00052 EH Eps15 homology doma 98.5 1.6E-06 3.6E-11 48.5 7.3 61 41-104 2-62 (67)
56 smart00027 EH Eps15 homology d 98.5 2.5E-06 5.4E-11 51.6 8.3 63 39-104 11-73 (96)
57 KOG0036|consensus 98.4 4.5E-06 9.8E-11 61.7 10.8 96 39-144 15-110 (463)
58 cd05026 S-100Z S-100Z: S-100Z 98.4 2.4E-06 5.1E-11 51.4 7.9 65 40-104 12-82 (93)
59 PF13405 EF-hand_6: EF-hand do 98.4 5.9E-07 1.3E-11 42.7 3.4 29 76-104 1-30 (31)
60 cd05025 S-100A1 S-100A1: S-100 98.4 4E-06 8.8E-11 50.3 7.8 66 39-104 10-81 (92)
61 cd00213 S-100 S-100: S-100 dom 98.4 2.9E-06 6.4E-11 50.4 7.1 65 40-104 10-80 (88)
62 PRK12309 transaldolase/EF-hand 98.4 2.4E-06 5.1E-11 63.9 8.0 60 67-144 326-385 (391)
63 KOG0030|consensus 98.3 2.9E-06 6.3E-11 53.8 6.3 67 72-143 8-76 (152)
64 cd05031 S-100A10_like S-100A10 98.3 6.4E-06 1.4E-10 49.6 7.7 65 40-104 10-80 (94)
65 cd00252 SPARC_EC SPARC_EC; ext 98.3 4.8E-06 1E-10 52.0 7.1 57 40-101 50-106 (116)
66 KOG0751|consensus 98.3 3.9E-06 8.4E-11 63.5 6.9 87 13-104 49-137 (694)
67 KOG2562|consensus 98.3 1.4E-05 3E-10 59.9 9.8 119 13-140 291-420 (493)
68 PF12763 EF-hand_4: Cytoskelet 98.2 2E-05 4.3E-10 48.3 8.0 64 72-143 7-70 (104)
69 cd05029 S-100A6 S-100A6: S-100 98.2 1.8E-05 3.9E-10 47.1 7.5 63 42-104 14-80 (88)
70 KOG0040|consensus 98.2 6.7E-05 1.5E-09 63.4 12.9 121 14-143 2267-2397(2399)
71 cd05023 S-100A11 S-100A11: S-1 98.2 2.4E-05 5.2E-10 46.6 7.8 64 41-104 12-81 (89)
72 PF13202 EF-hand_5: EF hand; P 98.1 4E-06 8.6E-11 37.8 3.0 25 77-101 1-25 (25)
73 PF14788 EF-hand_10: EF hand; 98.1 2.1E-05 4.5E-10 41.4 5.6 48 92-144 2-49 (51)
74 PF14658 EF-hand_9: EF-hand do 98.0 4.4E-05 9.6E-10 42.5 6.6 61 43-103 3-64 (66)
75 KOG4251|consensus 98.0 7.2E-06 1.6E-10 57.0 3.5 101 36-141 234-342 (362)
76 PF13202 EF-hand_5: EF hand; P 98.0 2.2E-05 4.7E-10 35.3 3.7 23 120-142 3-25 (25)
77 KOG4065|consensus 97.9 6.2E-05 1.3E-09 46.3 6.4 68 74-141 66-142 (144)
78 cd05030 calgranulins Calgranul 97.9 0.00011 2.3E-09 43.8 6.8 54 51-104 23-80 (88)
79 cd05024 S-100A10 S-100A10: A s 97.9 2.1E-05 4.4E-10 46.8 3.4 54 10-68 23-78 (91)
80 KOG0377|consensus 97.8 0.00012 2.6E-09 55.0 7.5 68 37-104 546-616 (631)
81 PF14788 EF-hand_10: EF hand; 97.7 0.00023 5.1E-09 37.4 5.9 50 54-104 1-50 (51)
82 KOG0040|consensus 97.7 9.1E-05 2E-09 62.7 6.4 65 76-145 2254-2325(2399)
83 KOG4251|consensus 97.7 0.00016 3.4E-09 50.5 6.5 64 40-103 103-168 (362)
84 PRK12309 transaldolase/EF-hand 97.7 0.00012 2.5E-09 55.1 6.4 54 37-104 333-386 (391)
85 PF09279 EF-hand_like: Phospho 97.7 0.00042 9.2E-09 40.6 7.5 69 77-146 2-71 (83)
86 PF13405 EF-hand_6: EF-hand do 97.6 0.00014 3.1E-09 34.3 3.8 25 120-144 4-28 (31)
87 KOG4666|consensus 97.6 9.9E-05 2.2E-09 53.3 3.8 117 19-144 208-324 (412)
88 KOG0046|consensus 97.5 0.0004 8.6E-09 53.2 6.7 63 76-144 20-85 (627)
89 KOG0751|consensus 97.5 0.0006 1.3E-08 52.0 7.5 100 36-139 106-239 (694)
90 PF10591 SPARC_Ca_bdg: Secrete 97.5 5.6E-05 1.2E-09 47.1 1.7 62 72-140 51-112 (113)
91 KOG1029|consensus 97.5 0.0012 2.6E-08 52.9 9.2 120 12-142 27-255 (1118)
92 smart00054 EFh EF-hand, calciu 97.2 0.00076 1.6E-08 30.2 3.3 27 77-103 2-28 (29)
93 smart00054 EFh EF-hand, calciu 96.9 0.0024 5.3E-08 28.4 3.6 25 120-144 4-28 (29)
94 PF12763 EF-hand_4: Cytoskelet 96.9 0.0033 7.1E-08 38.5 5.0 59 42-104 14-72 (104)
95 PLN02952 phosphoinositide phos 96.9 0.023 4.9E-07 45.2 10.6 93 51-144 13-110 (599)
96 KOG0041|consensus 96.7 0.029 6.3E-07 38.2 9.0 97 39-138 100-197 (244)
97 KOG0038|consensus 96.4 0.022 4.7E-07 36.9 6.4 64 41-104 111-178 (189)
98 KOG2562|consensus 96.3 0.023 5E-07 43.3 7.2 98 40-145 227-344 (493)
99 PF09069 EF-hand_3: EF-hand; 96.3 0.048 1E-06 32.4 7.2 71 75-148 3-79 (90)
100 KOG4578|consensus 96.1 0.0054 1.2E-07 44.7 2.7 68 76-147 334-401 (421)
101 PF10591 SPARC_Ca_bdg: Secrete 96.0 0.0042 9E-08 38.7 1.6 56 41-99 57-112 (113)
102 KOG2243|consensus 95.7 0.021 4.6E-07 49.1 5.1 58 80-143 4062-4119(5019)
103 KOG0169|consensus 95.7 0.26 5.6E-06 40.0 10.6 98 42-144 176-274 (746)
104 KOG1955|consensus 95.3 0.044 9.5E-07 42.3 5.1 66 71-143 227-292 (737)
105 KOG4347|consensus 94.7 0.055 1.2E-06 42.9 4.3 59 37-97 554-612 (671)
106 KOG4347|consensus 94.5 0.068 1.5E-06 42.4 4.4 77 55-137 535-611 (671)
107 KOG4578|consensus 94.0 0.054 1.2E-06 39.7 2.8 62 43-104 338-399 (421)
108 PF05517 p25-alpha: p25-alpha 94.0 0.59 1.3E-05 30.7 7.5 61 79-143 3-68 (154)
109 KOG0169|consensus 93.6 0.95 2.1E-05 36.9 9.1 94 40-143 138-231 (746)
110 KOG1265|consensus 93.4 3.1 6.7E-05 35.0 11.8 83 55-145 205-300 (1189)
111 KOG0042|consensus 93.4 0.23 5E-06 39.2 5.4 64 76-144 594-657 (680)
112 PF05042 Caleosin: Caleosin re 93.3 0.64 1.4E-05 31.1 6.6 35 108-146 92-126 (174)
113 PF09279 EF-hand_like: Phospho 93.1 0.39 8.5E-06 27.8 5.0 62 42-104 4-70 (83)
114 KOG4065|consensus 93.0 0.73 1.6E-05 28.7 6.2 59 42-100 71-142 (144)
115 KOG3866|consensus 92.9 0.27 5.8E-06 35.9 4.8 65 79-143 248-323 (442)
116 KOG4286|consensus 92.7 0.95 2E-05 37.0 7.9 98 42-148 474-584 (966)
117 KOG0039|consensus 92.6 0.47 1E-05 38.5 6.4 87 52-146 2-91 (646)
118 KOG3555|consensus 92.5 0.27 5.8E-06 36.4 4.4 65 72-145 247-311 (434)
119 KOG0035|consensus 92.2 0.67 1.5E-05 38.6 6.7 70 75-145 747-817 (890)
120 KOG1707|consensus 91.5 1.6 3.5E-05 34.7 7.8 30 118-147 317-346 (625)
121 PF08726 EFhand_Ca_insen: Ca2+ 89.4 0.52 1.1E-05 26.6 2.8 60 74-142 5-67 (69)
122 KOG0035|consensus 88.4 2.6 5.7E-05 35.3 7.1 83 16-99 763-848 (890)
123 KOG0046|consensus 87.8 5.5 0.00012 31.5 8.1 55 50-104 30-86 (627)
124 PLN02230 phosphoinositide phos 87.2 6.1 0.00013 31.9 8.3 72 72-144 26-102 (598)
125 PF14513 DAG_kinase_N: Diacylg 86.7 1.4 3.1E-05 28.4 3.9 50 39-88 26-82 (138)
126 PF05042 Caleosin: Caleosin re 85.9 6.5 0.00014 26.4 6.7 66 74-142 95-164 (174)
127 PF04876 Tenui_NCP: Tenuivirus 85.8 5 0.00011 26.2 5.9 38 108-148 127-164 (175)
128 PLN02222 phosphoinositide phos 82.8 9.4 0.0002 30.8 7.5 66 74-145 24-91 (581)
129 PLN02228 Phosphoinositide phos 82.8 12 0.00025 30.2 8.0 69 71-145 20-93 (567)
130 PLN02223 phosphoinositide phos 82.4 12 0.00025 29.9 7.8 73 72-145 13-93 (537)
131 PF12174 RST: RCD1-SRO-TAF4 (R 82.4 4.6 0.0001 22.8 4.3 48 89-144 6-53 (70)
132 PF08976 DUF1880: Domain of un 77.9 2.7 5.9E-05 26.2 2.5 33 109-145 4-36 (118)
133 KOG1955|consensus 77.9 5.6 0.00012 31.3 4.7 31 74-104 264-294 (737)
134 KOG1029|consensus 74.5 18 0.00039 30.3 6.8 57 80-143 18-76 (1118)
135 KOG3555|consensus 73.7 8.3 0.00018 28.9 4.5 69 40-115 252-320 (434)
136 PLN02952 phosphoinositide phos 71.7 17 0.00037 29.5 6.2 54 88-146 13-67 (599)
137 KOG2871|consensus 71.4 4.1 8.8E-05 30.8 2.5 64 73-140 307-370 (449)
138 PF02864 STAT_bind: STAT prote 69.6 9 0.0002 27.5 3.9 53 89-141 176-232 (254)
139 PF12174 RST: RCD1-SRO-TAF4 (R 68.2 9.5 0.00021 21.5 3.1 51 52-106 6-56 (70)
140 TIGR01848 PHA_reg_PhaR polyhyd 66.6 20 0.00043 22.1 4.4 21 82-102 10-30 (107)
141 KOG1707|consensus 66.0 9.7 0.00021 30.6 3.7 61 75-142 315-375 (625)
142 PF07879 PHB_acc_N: PHB/PHA ac 64.3 5.9 0.00013 21.9 1.6 22 82-103 10-31 (64)
143 PF14513 DAG_kinase_N: Diacylg 63.8 37 0.00081 22.0 6.3 69 53-128 6-81 (138)
144 KOG3442|consensus 61.9 22 0.00047 22.5 4.0 43 88-132 52-94 (132)
145 PF01023 S_100: S-100/ICaBP ty 61.9 20 0.00043 18.1 3.6 28 76-103 7-36 (44)
146 PF09068 EF-hand_2: EF hand; 61.5 12 0.00026 23.8 3.0 53 52-104 57-126 (127)
147 PF05517 p25-alpha: p25-alpha 61.3 37 0.00081 22.2 5.4 53 16-68 18-71 (154)
148 PF08414 NADPH_Ox: Respiratory 58.7 39 0.00085 20.5 7.6 25 40-64 29-54 (100)
149 PRK09430 djlA Dna-J like membr 58.6 67 0.0015 23.2 9.5 104 41-148 95-212 (267)
150 KOG0998|consensus 57.5 5 0.00011 33.8 0.9 63 74-143 282-344 (847)
151 PF09068 EF-hand_2: EF hand; 57.1 48 0.001 21.0 7.6 90 53-142 13-123 (127)
152 PF05099 TerB: Tellurite resis 56.2 48 0.001 20.8 5.6 91 50-144 35-126 (140)
153 PF10437 Lip_prot_lig_C: Bacte 54.7 23 0.00051 20.5 3.3 43 93-142 43-86 (86)
154 PF09373 PMBR: Pseudomurein-bi 52.4 19 0.00041 16.9 2.1 16 52-67 2-17 (33)
155 TIGR03573 WbuX N-acetyl sugar 52.4 48 0.001 24.8 5.3 44 88-142 299-342 (343)
156 PF00404 Dockerin_1: Dockerin 50.9 21 0.00045 15.0 2.7 15 85-99 1-15 (21)
157 cd07316 terB_like_DjlA N-termi 50.3 53 0.0011 19.5 8.2 83 51-137 12-94 (106)
158 PF04558 tRNA_synt_1c_R1: Glut 49.3 19 0.00042 24.0 2.5 50 73-124 83-132 (164)
159 COG3877 Uncharacterized protei 47.6 32 0.00069 21.2 3.0 14 88-101 107-120 (122)
160 KOG4004|consensus 46.9 10 0.00022 26.2 0.9 56 81-143 193-249 (259)
161 KOG1954|consensus 46.8 34 0.00073 26.4 3.7 45 88-139 456-500 (532)
162 PF03705 CheR_N: CheR methyltr 46.4 35 0.00076 17.8 2.9 51 95-147 6-56 (57)
163 PF11829 DUF3349: Protein of u 46.0 66 0.0014 19.4 6.0 62 55-117 20-81 (96)
164 COG5562 Phage envelope protein 45.3 17 0.00037 23.4 1.7 26 40-65 74-99 (137)
165 PRK00819 RNA 2'-phosphotransfe 45.1 49 0.0011 22.4 4.0 30 86-116 28-57 (179)
166 cd07313 terB_like_2 tellurium 44.9 66 0.0014 19.1 7.7 76 51-130 12-88 (104)
167 PLN02228 Phosphoinositide phos 44.1 1.3E+02 0.0028 24.6 6.7 63 39-103 25-92 (567)
168 PF10897 DUF2713: Protein of u 43.9 1.1E+02 0.0023 21.3 5.4 55 38-95 164-229 (246)
169 TIGR00988 hip integration host 43.5 51 0.0011 19.4 3.6 45 93-138 2-48 (94)
170 PF09336 Vps4_C: Vps4 C termin 41.9 57 0.0012 17.8 3.3 25 91-116 29-53 (62)
171 PF07308 DUF1456: Protein of u 41.0 66 0.0014 18.0 4.6 21 95-116 17-37 (68)
172 PF06648 DUF1160: Protein of u 40.9 94 0.002 19.7 6.4 40 73-115 35-74 (122)
173 KOG3449|consensus 40.4 90 0.002 19.4 5.4 44 77-125 3-46 (112)
174 cd03035 ArsC_Yffb Arsenate Red 39.9 76 0.0017 19.2 4.0 27 121-147 60-86 (105)
175 PF11116 DUF2624: Protein of u 38.3 86 0.0019 18.5 6.1 33 91-128 14-46 (85)
176 PRK00199 ihfB integration host 38.2 66 0.0014 18.9 3.5 30 93-123 2-31 (94)
177 PF02671 PAH: Paired amphipath 38.0 57 0.0012 16.4 4.0 15 90-104 17-31 (47)
178 cd06404 PB1_aPKC PB1 domain is 37.6 82 0.0018 18.5 3.6 20 74-93 58-77 (83)
179 PF03979 Sigma70_r1_1: Sigma-7 36.5 55 0.0012 18.9 2.8 26 88-116 18-43 (82)
180 PF12486 DUF3702: ImpA domain 34.6 1.1E+02 0.0025 20.0 4.3 29 76-104 70-98 (148)
181 PF02761 Cbl_N2: CBL proto-onc 34.5 1E+02 0.0022 18.2 6.5 50 89-143 20-69 (85)
182 TIGR02675 tape_meas_nterm tape 34.3 66 0.0014 18.2 2.9 13 52-64 28-40 (75)
183 PF01885 PTS_2-RNA: RNA 2'-pho 34.2 88 0.0019 21.3 3.9 30 86-116 27-56 (186)
184 KOG1264|consensus 34.0 3.2E+02 0.0069 23.8 7.8 127 14-146 158-295 (1267)
185 KOG4403|consensus 33.6 1.8E+02 0.004 22.9 5.8 69 40-112 70-138 (575)
186 COG2818 Tag 3-methyladenine DN 33.4 29 0.00063 23.7 1.5 31 74-104 54-84 (188)
187 PF09824 ArsR: ArsR transcript 33.3 91 0.002 20.7 3.7 64 75-146 72-135 (160)
188 cd05833 Ribosomal_P2 Ribosomal 32.7 1.2E+02 0.0027 18.7 5.5 37 79-116 5-41 (109)
189 KOG3866|consensus 32.6 42 0.00091 25.0 2.3 48 93-144 225-272 (442)
190 KOG4301|consensus 31.2 2.4E+02 0.0052 21.5 6.3 92 44-146 116-217 (434)
191 PF12419 DUF3670: SNF2 Helicas 29.0 1.6E+02 0.0034 18.9 4.3 51 88-142 80-139 (141)
192 PTZ00373 60S Acidic ribosomal 28.8 1.5E+02 0.0033 18.5 5.8 38 78-116 6-43 (112)
193 PF10891 DUF2719: Protein of u 28.7 47 0.001 19.2 1.6 14 130-143 33-46 (81)
194 KOG2243|consensus 28.7 2E+02 0.0044 26.8 5.8 64 36-101 4055-4118(5019)
195 PHA02105 hypothetical protein 28.5 1.1E+02 0.0023 16.6 3.6 53 91-147 4-60 (68)
196 PF11907 DUF3427: Domain of un 27.9 1.8E+02 0.0039 21.1 4.9 27 89-116 25-51 (274)
197 PF08006 DUF1700: Protein of u 27.8 1.9E+02 0.0041 19.3 4.8 29 56-85 2-30 (181)
198 PF07492 Trehalase_Ca-bi: Neut 27.8 26 0.00057 16.2 0.4 18 120-137 3-20 (30)
199 cd02977 ArsC_family Arsenate R 27.4 1.4E+02 0.0031 17.7 4.8 55 90-147 34-88 (105)
200 KOG1265|consensus 26.7 4.4E+02 0.0096 23.2 10.0 82 17-103 205-299 (1189)
201 PF07531 TAFH: NHR1 homology t 26.0 1.6E+02 0.0035 17.8 4.2 19 130-148 38-56 (96)
202 PF06384 ICAT: Beta-catenin-in 25.9 1.2E+02 0.0026 17.6 2.9 19 96-115 21-39 (78)
203 PF11020 DUF2610: Domain of un 25.6 1.3E+02 0.0028 17.5 3.0 39 101-143 38-76 (82)
204 COG3793 TerB Tellurite resista 24.8 2.1E+02 0.0045 18.7 4.6 55 50-104 36-96 (144)
205 TIGR00624 tag DNA-3-methyladen 24.5 33 0.00071 23.3 0.6 65 74-142 52-116 (179)
206 PRK10026 arsenate reductase; P 24.4 2.1E+02 0.0045 18.6 4.5 53 91-147 38-90 (141)
207 PF13829 DUF4191: Domain of un 24.0 2.1E+02 0.0045 20.3 4.4 37 85-122 161-197 (224)
208 KOG0042|consensus 23.2 1.6E+02 0.0034 24.2 4.0 62 42-104 597-658 (680)
209 PF08461 HTH_12: Ribonuclease 22.8 1.5E+02 0.0032 16.3 3.2 37 88-129 10-46 (66)
210 KOG2301|consensus 22.5 86 0.0019 28.9 2.8 33 72-104 1414-1446(1592)
211 PF03672 UPF0154: Uncharacteri 21.8 1.6E+02 0.0035 16.3 4.2 28 88-116 28-55 (64)
212 TIGR00987 himA integration hos 21.4 1.8E+02 0.004 17.1 3.4 30 92-123 2-31 (96)
213 PLN02859 glutamine-tRNA ligase 20.7 2.2E+02 0.0047 24.4 4.5 52 71-124 83-134 (788)
214 TIGR01446 DnaD_dom DnaD and ph 20.7 1.6E+02 0.0036 16.1 2.9 33 84-116 5-37 (73)
215 PLN00138 large subunit ribosom 20.6 2.3E+02 0.005 17.7 5.4 36 80-116 6-41 (113)
216 PF02037 SAP: SAP domain; Int 20.6 1.2E+02 0.0025 14.3 2.7 20 17-36 4-23 (35)
217 KOG0506|consensus 20.2 4.7E+02 0.01 21.1 6.3 63 79-143 90-157 (622)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=131.22 Aligned_cols=124 Identities=32% Similarity=0.542 Sum_probs=108.6
Q ss_pred ccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCC--CCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCc
Q psy1820 14 HKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSED--GQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQY 91 (149)
Q Consensus 14 ~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~ 91 (149)
+|.++..+|..+||.+| .+++...+.+++... +.+.|+|.+|+.++.......+.+++++.||+.||.+++|+
T Consensus 34 ~G~I~~~el~~ilr~lg-----~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~ 108 (160)
T COG5126 34 DGLIDRNELGKILRSLG-----FNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGY 108 (160)
T ss_pred CCCCcHHHHHHHHHHcC-----CCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCce
Confidence 55666778999999888 666665555555442 57999999999999998878888889999999999999999
Q ss_pred ccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCC
Q psy1820 92 IGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPD 147 (149)
Q Consensus 92 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 147 (149)
|+..+|+.+++.+ |..+++++++. ++..++.+++|.|+|++|++.+...|.
T Consensus 109 Is~~eL~~vl~~l-ge~~~deev~~----ll~~~d~d~dG~i~~~eF~~~~~~~~~ 159 (160)
T COG5126 109 ISIGELRRVLKSL-GERLSDEEVEK----LLKEYDEDGDGEIDYEEFKKLIKDSPT 159 (160)
T ss_pred ecHHHHHHHHHhh-cccCCHHHHHH----HHHhcCCCCCceEeHHHHHHHHhccCC
Confidence 9999999999999 99999999997 999999999999999999999988765
No 2
>KOG0034|consensus
Probab=99.89 E-value=7.6e-22 Score=132.09 Aligned_cols=129 Identities=40% Similarity=0.701 Sum_probs=116.6
Q ss_pred CCcccccccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCc-eeHHHHHHHHHhhccCCChHHHHHHHhhHhc
Q psy1820 7 TTVRVPVHKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGN-LNFEEFLELLSVFSEQASRDIKVFYAFKIYD 85 (149)
Q Consensus 7 ~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~-I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D 85 (149)
..|.++++++..++++. .+|...+|+..++.+++|. |+|++|+..++.+.+....++++..||++||
T Consensus 47 ~~g~lt~eef~~i~~~~------------~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD 114 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPELA------------LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYD 114 (187)
T ss_pred ccCccCHHHHHHHHHHh------------cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhc
Confidence 66777777777777666 8999999999999988877 9999999999999988888889999999999
Q ss_pred CCCCCcccHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCC
Q psy1820 86 FDNDQYIGMSDLEIGIRLLTRSELS--VQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPD 147 (149)
Q Consensus 86 ~~~~g~I~~~el~~~l~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 147 (149)
.+++|.|+.+|+.+++..+.+...+ ++.+..+++.++..+|.+++|.|+++||++++.+.|.
T Consensus 115 ~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 115 LDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred CCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 9999999999999999988666666 8888999999999999999999999999999999875
No 3
>KOG0038|consensus
Probab=99.87 E-value=2.2e-21 Score=122.23 Aligned_cols=133 Identities=62% Similarity=1.026 Sum_probs=125.1
Q ss_pred cCCCCcccccccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhH
Q psy1820 4 VEPTTVRVPVHKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKI 83 (149)
Q Consensus 4 ~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~ 83 (149)
...+...++.+.....+||+ .+|...+|...+..+|.|.++|..|+.+++.++...+..-++.-||+.
T Consensus 49 ~~~~~v~vp~e~i~kMPELk------------enpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkI 116 (189)
T KOG0038|consen 49 NRPPIVKVPFELIEKMPELK------------ENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKI 116 (189)
T ss_pred CCCCceeecHHHHhhChhhh------------cChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEE
Confidence 33677778888777889999 999999999999999999999999999999999888888899999999
Q ss_pred hcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCCC
Q psy1820 84 YDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPDS 148 (149)
Q Consensus 84 ~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 148 (149)
||-++++.|...++...+..++...++++|+..++++++...|.|++|+|++.||.+++.++|+|
T Consensus 117 YDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDF 181 (189)
T KOG0038|consen 117 YDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDF 181 (189)
T ss_pred eecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcch
Confidence 99999999999999999999988899999999999999999999999999999999999999987
No 4
>KOG0027|consensus
Probab=99.87 E-value=9.1e-21 Score=124.30 Aligned_cols=121 Identities=32% Similarity=0.564 Sum_probs=104.0
Q ss_pred cccCHHHHHHHHHhhcccCCCCCchHHH---HHHhhcCCCCCceeHHHHHHHHHhhccCCC----hHHHHHHHhhHhcCC
Q psy1820 15 KLITIAELRTMYLWKGLFSTQENPFGQR---ICQVFSEDGQGNLNFEEFLELLSVFSEQAS----RDIKVFYAFKIYDFD 87 (149)
Q Consensus 15 ~~~~~~el~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~----~~~~l~~~f~~~D~~ 87 (149)
|.++..+|+.+++.+| ..++..+ ++.-++.+++|.|++.+|+.++........ ..+.++.||+.||++
T Consensus 23 G~i~~~el~~~lr~lg-----~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d 97 (151)
T KOG0027|consen 23 GKISVEELGAVLRSLG-----QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKD 97 (151)
T ss_pred CcccHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccC
Confidence 6778889999999999 6666555 455555689999999999999987653322 245899999999999
Q ss_pred CCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhC
Q psy1820 88 NDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRA 145 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 145 (149)
++|+|+..||+.+|..+ |...+.+++.. +++.+|.+++|.|+|++|+.++...
T Consensus 98 ~~G~Is~~el~~~l~~l-g~~~~~~e~~~----mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 98 GDGFISASELKKVLTSL-GEKLTDEECKE----MIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred CCCcCcHHHHHHHHHHh-CCcCCHHHHHH----HHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 99999999999999999 99999999987 9999999999999999999998754
No 5
>PTZ00183 centrin; Provisional
Probab=99.82 E-value=1e-18 Score=115.04 Aligned_cols=129 Identities=24% Similarity=0.369 Sum_probs=109.2
Q ss_pred cccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcc
Q psy1820 13 VHKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYI 92 (149)
Q Consensus 13 ~~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I 92 (149)
.+|.++..+|..+++..|... .......++..++.+++|.|+|.+|+.++............+..+|+.+|.+++|.|
T Consensus 30 ~~G~i~~~e~~~~l~~~g~~~--~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i 107 (158)
T PTZ00183 30 GSGTIDPKELKVAMRSLGFEP--KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKI 107 (158)
T ss_pred CCCcccHHHHHHHHHHhCCCC--CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcC
Confidence 466777778888887776322 233567788888889999999999999887755455556789999999999999999
Q ss_pred cHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCCC
Q psy1820 93 GMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPDS 148 (149)
Q Consensus 93 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 148 (149)
+.+||..++..+ +.+++..++.. ++..+|.+++|.|++++|..++...|.+
T Consensus 108 ~~~e~~~~l~~~-~~~l~~~~~~~----~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 158 (158)
T PTZ00183 108 SLKNLKRVAKEL-GETITDEELQE----MIDEADRNGDGEISEEEFYRIMKKTNLF 158 (158)
T ss_pred cHHHHHHHHHHh-CCCCCHHHHHH----HHHHhCCCCCCcCcHHHHHHHHhcccCC
Confidence 999999999988 88999999987 9999999999999999999999998864
No 6
>KOG0028|consensus
Probab=99.82 E-value=8.3e-19 Score=112.15 Aligned_cols=126 Identities=25% Similarity=0.400 Sum_probs=109.7
Q ss_pred cccccccCHHHHHHHHHhhcccCCCCCchHHH---HHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCC
Q psy1820 11 VPVHKLITIAELRTMYLWKGLFSTQENPFGQR---ICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFD 87 (149)
Q Consensus 11 ~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~ 87 (149)
.+.++.+...||+-.++++| ..+...+ +..-+++++.|.|+|++|+..+..........+.+..+|+.+|.+
T Consensus 44 ~~~~g~iD~~EL~vAmralG-----FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D 118 (172)
T KOG0028|consen 44 PDMAGKIDVEELKVAMRALG-----FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDD 118 (172)
T ss_pred cCCCCcccHHHHHHHHHHcC-----CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHccccc
Confidence 45677788889999999999 5554444 555556688999999999999887665555778999999999999
Q ss_pred CCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCC
Q psy1820 88 NDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAP 146 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 146 (149)
++|.|+..+|+.+...+ |.+++.+++.+ ++..+|.+++|.|+-+||.++|++.+
T Consensus 119 ~~Gkis~~~lkrvakeL-genltD~El~e----MIeEAd~d~dgevneeEF~~imk~t~ 172 (172)
T KOG0028|consen 119 KTGKISQRNLKRVAKEL-GENLTDEELME----MIEEADRDGDGEVNEEEFIRIMKKTS 172 (172)
T ss_pred CCCCcCHHHHHHHHHHh-CccccHHHHHH----HHHHhcccccccccHHHHHHHHhcCC
Confidence 99999999999999999 99999999997 99999999999999999999998753
No 7
>KOG0044|consensus
Probab=99.80 E-value=9.8e-19 Score=117.28 Aligned_cols=133 Identities=24% Similarity=0.401 Sum_probs=105.5
Q ss_pred cccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcc
Q psy1820 13 VHKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYI 92 (149)
Q Consensus 13 ~~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I 92 (149)
.+|.++..+++.+++.+.. ..........+++.+|.+++|.|+|.||+..++.+. ++...+.+..+|++||.+++|.|
T Consensus 40 P~G~~~~~~F~~i~~~~fp-~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 40 PSGRLTLEEFREIYASFFP-DGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYI 117 (193)
T ss_pred CCCccCHHHHHHHHHHHCC-CCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceE
Confidence 3555666668888776653 111333567899999999999999999999999988 66667799999999999999999
Q ss_pred cHHHHHHHHHHH---ccC---CCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCC
Q psy1820 93 GMSDLEIGIRLL---TRS---ELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPD 147 (149)
Q Consensus 93 ~~~el~~~l~~~---~~~---~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 147 (149)
++.|+..++..+ .+. +..+...++.++.+|+.+|.|++|.||++||+..+...|.
T Consensus 118 t~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~ 178 (193)
T KOG0044|consen 118 TKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPS 178 (193)
T ss_pred cHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHH
Confidence 999999988765 121 1224455667788999999999999999999999887654
No 8
>PTZ00184 calmodulin; Provisional
Probab=99.78 E-value=1.4e-17 Score=108.47 Aligned_cols=125 Identities=29% Similarity=0.458 Sum_probs=103.9
Q ss_pred cccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcc
Q psy1820 13 VHKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYI 92 (149)
Q Consensus 13 ~~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I 92 (149)
.+|.++..+|..++..++... .......++..++.+++|.|+|++|+.++............+..+|+.+|.+++|.|
T Consensus 24 ~~G~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i 101 (149)
T PTZ00184 24 GDGTITTKELGTVMRSLGQNP--TEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFI 101 (149)
T ss_pred CCCcCCHHHHHHHHHHhCCCC--CHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeE
Confidence 455667777787776666322 233567788888889999999999999988765455566788999999999999999
Q ss_pred cHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 93 GMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 93 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
+.++|..++..+ +..++.+++.. ++..+|.+++|.|+|+||+.++..
T Consensus 102 ~~~e~~~~l~~~-~~~~~~~~~~~----~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 102 SAAELRHVMTNL-GEKLTDEEVDE----MIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred eHHHHHHHHHHH-CCCCCHHHHHH----HHHhcCCCCCCcCcHHHHHHHHhc
Confidence 999999999998 88899988886 899999999999999999998763
No 9
>KOG0031|consensus
Probab=99.75 E-value=2e-16 Score=100.68 Aligned_cols=122 Identities=19% Similarity=0.315 Sum_probs=111.0
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCc
Q psy1820 12 PVHKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQY 91 (149)
Q Consensus 12 ~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~ 91 (149)
+++|+|...+|+.+|.++| ..++..+|-.++. ...|.|||.-|+.++-........++.+..||+.||.++.|.
T Consensus 44 nrDG~IdkeDL~d~~aSlG-----k~~~d~elDaM~~-Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~ 117 (171)
T KOG0031|consen 44 NRDGFIDKEDLRDMLASLG-----KIASDEELDAMMK-EAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGK 117 (171)
T ss_pred cCCCcccHHHHHHHHHHcC-----CCCCHHHHHHHHH-hCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCc
Confidence 5678888999999999999 8888888888887 578999999999998765557777889999999999999999
Q ss_pred ccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 92 IGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 92 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
|....|+++|... |.+++++++++ +++.+-.+..|.|+|..|+.+++.
T Consensus 118 I~~d~lre~Ltt~-gDr~~~eEV~~----m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 118 IDEDYLRELLTTM-GDRFTDEEVDE----MYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred cCHHHHHHHHHHh-cccCCHHHHHH----HHHhCCcccCCceeHHHHHHHHHc
Confidence 9999999999998 99999999998 999998999999999999999985
No 10
>KOG0037|consensus
Probab=99.73 E-value=2e-16 Score=106.23 Aligned_cols=122 Identities=21% Similarity=0.251 Sum_probs=106.0
Q ss_pred ccccccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCC
Q psy1820 10 RVPVHKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDND 89 (149)
Q Consensus 10 ~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~ 89 (149)
..+.++.++.+||...+...+..+. ...++.-|+.+++.+.+|+|+++||..++..+. .|+.+|+.||+|++
T Consensus 67 D~d~sg~i~~~eLq~aLsn~~~~~F-s~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~Wr~vF~~~D~D~S 138 (221)
T KOG0037|consen 67 DRDRSGRILAKELQQALSNGTWSPF-SIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QWRNVFRTYDRDRS 138 (221)
T ss_pred CccccccccHHHHHHHhhcCCCCCC-CHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HHHHHHHhcccCCC
Confidence 3456677788899988875554443 344778899999999999999999999998887 99999999999999
Q ss_pred CcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 90 QYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 90 g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
|.|+..||+++|..+ |..++++-.+- +++.+|...+|.|.+++|+++|..
T Consensus 139 G~I~~sEL~~Al~~~-Gy~Lspq~~~~----lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 139 GTIDSSELRQALTQL-GYRLSPQFYNL----LVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred CcccHHHHHHHHHHc-CcCCCHHHHHH----HHHHhccccCCceeHHHHHHHHHH
Confidence 999999999999999 99999988875 899999877999999999998864
No 11
>KOG0030|consensus
Probab=99.70 E-value=6.4e-16 Score=96.80 Aligned_cols=121 Identities=17% Similarity=0.322 Sum_probs=102.7
Q ss_pred cccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcC-CCC----CceeHHHHHHHHHhhccC--CChHHHHHHHhhHhc
Q psy1820 13 VHKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSE-DGQ----GNLNFEEFLELLSVFSEQ--ASRDIKVFYAFKIYD 85 (149)
Q Consensus 13 ~~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----g~I~~~ef~~~~~~~~~~--~~~~~~l~~~f~~~D 85 (149)
.++.++..+..+++|++| .+|+..++.+.+.+ ..+ .+|+|++|+.+++.+.+. ...-+.....++.||
T Consensus 24 gD~ki~~~q~gdvlRalG-----~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFD 98 (152)
T KOG0030|consen 24 GDGKISGSQVGDVLRALG-----QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFD 98 (152)
T ss_pred CcccccHHHHHHHHHHhc-----CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhc
Confidence 677788889999999999 99999999988876 333 789999999999887743 222346778999999
Q ss_pred CCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 86 FDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 86 ~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
++++|.|...||+++|.++ |..++++|+++ +++ -..|.+|.|+|+.|++.+..
T Consensus 99 keg~G~i~~aeLRhvLttl-Gekl~eeEVe~----Lla-g~eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 99 KEGNGTIMGAELRHVLTTL-GEKLTEEEVEE----LLA-GQEDSNGCINYEAFVKHIMS 151 (152)
T ss_pred ccCCcceeHHHHHHHHHHH-HhhccHHHHHH----HHc-cccccCCcCcHHHHHHHHhc
Confidence 9999999999999999999 99999999996 554 34578899999999998753
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.59 E-value=1.7e-14 Score=81.67 Aligned_cols=66 Identities=33% Similarity=0.591 Sum_probs=61.2
Q ss_pred HHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy1820 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142 (149)
Q Consensus 76 ~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 142 (149)
.++.+|+.+|.+++|+|+.+||..++..+ +...+++++.+.+..+|+.+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL-GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT-TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 36789999999999999999999999999 7888888888888889999999999999999999875
No 13
>KOG0036|consensus
Probab=99.49 E-value=9.1e-13 Score=96.07 Aligned_cols=125 Identities=16% Similarity=0.265 Sum_probs=106.4
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCc
Q psy1820 12 PVHKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQY 91 (149)
Q Consensus 12 ~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~ 91 (149)
+.++.++..++.+.+..+.-. .......+.++..++.|.+|.++|+||...+... +..+...|+.+|.+++|.
T Consensus 26 ~~~g~~d~~~l~k~~~~l~~~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E~~l~~~F~~iD~~hdG~ 98 (463)
T KOG0036|consen 26 KNDGQVDLDQLEKGLEKLDHP-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ELELYRIFQSIDLEHDGK 98 (463)
T ss_pred CCCCceeHHHHHHHHHhcCCC-CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------HHHHHHHHhhhccccCCc
Confidence 456777888888887666543 1233456788999999999999999999998543 458899999999999999
Q ss_pred ccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCCC
Q psy1820 92 IGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPDS 148 (149)
Q Consensus 92 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 148 (149)
|+..|+.+.++.+ |.+++.+++.. ++..+|+++++.|+++||..++..+|+.
T Consensus 99 i~~~Ei~~~l~~~-gi~l~de~~~k----~~e~~d~~g~~~I~~~e~rd~~ll~p~s 150 (463)
T KOG0036|consen 99 IDPNEIWRYLKDL-GIQLSDEKAAK----FFEHMDKDGKATIDLEEWRDHLLLYPES 150 (463)
T ss_pred cCHHHHHHHHHHh-CCccCHHHHHH----HHHHhccCCCeeeccHHHHhhhhcCChh
Confidence 9999999999999 99999999885 9999999999999999999999988853
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.47 E-value=3.4e-13 Score=80.34 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=58.5
Q ss_pred HHHHHHhhHhcC-CCCCcccHHHHHHHHHH-HccCCCCH-HHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 75 IKVFYAFKIYDF-DNDQYIGMSDLEIGIRL-LTRSELSV-QELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 75 ~~l~~~f~~~D~-~~~g~I~~~el~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
..++.+|+.||+ +++|+|+..||+.++.. + +..++. +++++ +++..|.|++|.|+|+||+.++..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el-g~~ls~~~~v~~----mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQL-PHLLKDVEGLEE----KMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh-hhhccCHHHHHH----HHHHhCCCCCCCCcHHHHHHHHHH
Confidence 378899999999 99999999999999998 7 666777 77776 999999999999999999988764
No 15
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.41 E-value=8.5e-12 Score=81.41 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=88.7
Q ss_pred hHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHH
Q psy1820 39 FGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVS 118 (149)
Q Consensus 39 ~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~ 118 (149)
.+.+.+.+++++++|.|++.++..++. ..+..+....+..+|..+|. +++.|+..+|..+|.......-+++++..
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~-- 96 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELRE-- 96 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHH--
Confidence 346788889999999999999999987 55577778899999999999 99999999999999887556777888886
Q ss_pred HHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 119 EKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 119 ~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
+|+.+|.|++|.|+..++..+++.
T Consensus 97 --aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 97 --AFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred --HHHHhCCCCCceecHHHHHHHHHh
Confidence 999999999999999999999874
No 16
>KOG0027|consensus
Probab=99.39 E-value=7.9e-12 Score=81.94 Aligned_cols=102 Identities=25% Similarity=0.332 Sum_probs=86.6
Q ss_pred hHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCC----CHHHH
Q psy1820 39 FGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSEL----SVQEL 114 (149)
Q Consensus 39 ~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~----~~~~~ 114 (149)
...+++.+++.+++|.|+-.|+..++..+- ..+....+..+++.+|.+++|.|+.++|..++........ +.+++
T Consensus 9 el~~~F~~fD~d~~G~i~~~el~~~lr~lg-~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el 87 (151)
T KOG0027|consen 9 ELKEAFQLFDKDGDGKISVEELGAVLRSLG-QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEEL 87 (151)
T ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHH
Confidence 356788999999999999999999987776 5566779999999999999999999999999987622222 23477
Q ss_pred HHHHHHHHHHhCCCCCCceeHHHHHHHHhhC
Q psy1820 115 TQVSEKVIEEADVDGDGKLSFMEFEHVILRA 145 (149)
Q Consensus 115 ~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 145 (149)
.+ +|..+|.+++|.|+.+|+.++|...
T Consensus 88 ~e----aF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 88 KE----AFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred HH----HHHHHccCCCCcCcHHHHHHHHHHh
Confidence 75 9999999999999999999999863
No 17
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.39 E-value=3.8e-12 Score=75.86 Aligned_cols=64 Identities=27% Similarity=0.380 Sum_probs=58.4
Q ss_pred HHHHHhhHhc-CCCCC-cccHHHHHHHHHH-----HccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 76 KVFYAFKIYD-FDNDQ-YIGMSDLEIGIRL-----LTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 76 ~l~~~f~~~D-~~~~g-~I~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.++.+|+.|| ++++| .|+..||+.+|+. + |...+++++++ +++..|+|++|.|+|++|+.++..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~----~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDK----VMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHH----HHHHhCCCCCCcCcHHHHHHHHHH
Confidence 7889999998 79999 5999999999998 6 78889999987 999999999999999999988763
No 18
>PTZ00183 centrin; Provisional
Probab=99.37 E-value=2.2e-11 Score=79.99 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=82.1
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSE 119 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~ 119 (149)
...++..++.+++|.|+..||..++..+- .......+..+|+.+|.+++|.|++.||..++..........+.+..
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~--- 94 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK--- 94 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHH---
Confidence 45677888889999999999999987653 33445689999999999999999999999988765234455556654
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 120 KVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 120 ~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
+|+.+|.+++|.|+.+||..++..
T Consensus 95 -~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 95 -AFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred -HHHHhCCCCCCcCcHHHHHHHHHH
Confidence 999999999999999999999874
No 19
>PTZ00184 calmodulin; Provisional
Probab=99.36 E-value=3.1e-11 Score=78.39 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=81.0
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSE 119 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~ 119 (149)
..+.+..+|.+++|.|++++|..++..+. .......+..+|+.+|.+++|.|+.++|..++..........+.+.
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~---- 87 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIK---- 87 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHH----
Confidence 45677888889999999999999987664 3344568999999999999999999999998876522233334444
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 120 KVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 120 ~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.+|..+|.+++|.|+.++|..++..
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 4999999999999999999988864
No 20
>KOG0044|consensus
Probab=99.34 E-value=3.1e-11 Score=81.28 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=78.6
Q ss_pred CCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCC
Q psy1820 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDG 129 (149)
Q Consensus 50 ~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 129 (149)
..+|.++-++|..++..+-+..........+|+.||.+++|.|+..||..++..+ ..+..++.++. +|+.+|.|+
T Consensus 39 cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~-~rGt~eekl~w----~F~lyD~dg 113 (193)
T KOG0044|consen 39 CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT-SRGTLEEKLKW----AFRLYDLDG 113 (193)
T ss_pred CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-cCCcHHHHhhh----hheeecCCC
Confidence 5689999999999998877667777789999999999999999999999999887 55566666664 899999999
Q ss_pred CCceeHHHHHHHHhh
Q psy1820 130 DGKLSFMEFEHVILR 144 (149)
Q Consensus 130 ~g~I~~~eF~~~l~~ 144 (149)
+|.|+++|++.++..
T Consensus 114 dG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 114 DGYITKEEMLKIVQA 128 (193)
T ss_pred CceEcHHHHHHHHHH
Confidence 999999999988763
No 21
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.28 E-value=3.1e-11 Score=71.92 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=57.5
Q ss_pred HHHHHhhHhcC-CC-CCcccHHHHHHHHHH---HccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 76 KVFYAFKIYDF-DN-DQYIGMSDLEIGIRL---LTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 76 ~l~~~f~~~D~-~~-~g~I~~~el~~~l~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.+...|..||. ++ +|+|+.+||++++.. + |..++++++.+ +++..|.+++|.|+|+||+.++..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l-g~k~t~~ev~~----m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTI-GSKLQDAEIAK----LMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc-CCCCCHHHHHH----HHHHhcCCCCCCCcHHHHHHHHHH
Confidence 67889999998 67 899999999999973 5 78899999997 999999999999999999988764
No 22
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.27 E-value=4.6e-11 Score=71.99 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=54.3
Q ss_pred HHHHHhhHhc-CCCCC-cccHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 76 KVFYAFKIYD-FDNDQ-YIGMSDLEIGIRLLT----RSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 76 ~l~~~f~~~D-~~~~g-~I~~~el~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.++.+|+.|| ++++| .|+..||+.++.... ....++.++++ +++.+|.+++|.|+|+||+.++..
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~----i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDK----IMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHH----HHHHhCCCCCCCCCHHHHHHHHHH
Confidence 6788999999 78998 599999999997631 22346677776 999999999999999999998864
No 23
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.26 E-value=4.3e-11 Score=72.32 Aligned_cols=66 Identities=18% Similarity=0.352 Sum_probs=56.7
Q ss_pred HHHHHHhhHhcC-CC-CCcccHHHHHHHHHH-H---ccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 75 IKVFYAFKIYDF-DN-DQYIGMSDLEIGIRL-L---TRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 75 ~~l~~~f~~~D~-~~-~g~I~~~el~~~l~~-~---~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
..++.+|+.||. ++ +|.|+..||+.++.. + .+...+.+++.. +++.+|.+++|.|+|++|+.++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~----~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDK----IMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHH----HHHHhCCCCCCcCcHHHHHHHHHH
Confidence 368899999997 87 699999999999986 2 155678888886 999999999999999999988764
No 24
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.26 E-value=5.6e-11 Score=71.54 Aligned_cols=66 Identities=20% Similarity=0.428 Sum_probs=56.0
Q ss_pred HHHHHHhhHhc-CCCCCc-ccHHHHHHHHHH-Hc---cCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 75 IKVFYAFKIYD-FDNDQY-IGMSDLEIGIRL-LT---RSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 75 ~~l~~~f~~~D-~~~~g~-I~~~el~~~l~~-~~---~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
+.++.+|+.|| .+++|+ |+..||+.+|+. ++ +...+++++++ +++.+|.+++|.|+|++|+.++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~----i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDK----IMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHH----HHHHHCCCCCCcCcHHHHHHHHHH
Confidence 47889999997 999995 999999999985 41 22457778886 999999999999999999988764
No 25
>KOG4223|consensus
Probab=99.22 E-value=2.9e-11 Score=85.92 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=92.8
Q ss_pred ccCCCCcccccccccC---HHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChH----H
Q psy1820 3 GVEPTTVRVPVHKLIT---IAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRD----I 75 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~---~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~----~ 75 (149)
.++|++|.++.++|.. .++...| ....+++...-+|+|++|.|+++||+.-+.........+ .
T Consensus 172 AD~d~dg~lt~EEF~aFLHPEe~p~M----------~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~ 241 (325)
T KOG4223|consen 172 ADQDGDGSLTLEEFTAFLHPEEHPHM----------KDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLT 241 (325)
T ss_pred cccCCCCcccHHHHHhccChhhcchH----------HHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccc
Confidence 3567777777776654 3444433 344567777778999999999999998887655322222 2
Q ss_pred HHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy1820 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEH 140 (149)
Q Consensus 76 ~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 140 (149)
+-...+..+|+|++|+++..|+++.+... +......++. .++...|.|++|++|++|.+.
T Consensus 242 Ere~F~~~~DknkDG~L~~dEl~~WI~P~-~~d~A~~EA~----hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 242 EREQFFEFRDKNKDGKLDGDELLDWILPS-EQDHAKAEAR----HLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred cHHHHHHHhhcCCCCccCHHHHhcccCCC-CccHHHHHHH----HHhhhhccCccccccHHHHhh
Confidence 33568888999999999999999988776 6666666766 499999999999999999865
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.19 E-value=1.4e-10 Score=62.87 Aligned_cols=52 Identities=33% Similarity=0.491 Sum_probs=47.7
Q ss_pred CCCcccHHHHHHHHHHHccCC-CCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 88 NDQYIGMSDLEIGIRLLTRSE-LSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
++|.|+.++|+.+|..+ |.. ++++++.. ++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~-g~~~~s~~e~~~----l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL-GIKDLSEEEVDR----LFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT-TSSSSCHHHHHH----HHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh-CCCCCCHHHHHH----HHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999777 888 99999986 999999999999999999999863
No 27
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.17 E-value=2.6e-10 Score=68.05 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=56.4
Q ss_pred HHHHHHHhhHhcC--CCCCcccHHHHHHHHHHHccCCC----CHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 74 DIKVFYAFKIYDF--DNDQYIGMSDLEIGIRLLTRSEL----SVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 74 ~~~l~~~f~~~D~--~~~g~I~~~el~~~l~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
...++.+|..||+ +++|.|+..+|..+++...+..+ +.++++. ++..+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~----i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDK----IMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHH----HHHHhccCCCCcCcHHHHHHHHHH
Confidence 3468889999999 89999999999999976214333 4777776 999999999999999999998864
No 28
>PLN02964 phosphatidylserine decarboxylase
Probab=99.16 E-value=3.5e-10 Score=88.42 Aligned_cols=98 Identities=13% Similarity=0.223 Sum_probs=77.0
Q ss_pred hHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHH---HHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHH
Q psy1820 39 FGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI---KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELT 115 (149)
Q Consensus 39 ~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~---~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~ 115 (149)
...+.+.++|++++|.+ ....+.. +-...+... .+..+|+.+|.+++|.|+.+||..++..+ +...+++++.
T Consensus 144 elkeaF~lfD~dgdG~i-Lg~ilrs---lG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g~~~seEEL~ 218 (644)
T PLN02964 144 SACESFDLLDPSSSNKV-VGSIFVS---CSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-GNLVAANKKE 218 (644)
T ss_pred HHHHHHHHHCCCCCCcC-HHHHHHH---hCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-ccCCCHHHHH
Confidence 34567888999999987 2222222 210122222 38999999999999999999999999988 7778888888
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHhhC
Q psy1820 116 QVSEKVIEEADVDGDGKLSFMEFEHVILRA 145 (149)
Q Consensus 116 ~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 145 (149)
+ +|+.+|.|++|.|+++||.+++...
T Consensus 219 e----aFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 219 E----LFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred H----HHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 6 9999999999999999999998874
No 29
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.16 E-value=3.4e-10 Score=68.66 Aligned_cols=64 Identities=22% Similarity=0.195 Sum_probs=56.7
Q ss_pred HHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
...+..+|+.+|.+++|.|+.+++..++... + ++++++.. ++..+|.+++|.|+++||+.++..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~--~~~~ev~~----i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-G--LPQTLLAK----IWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-C--CCHHHHHH----HHHHhcCCCCCCcCHHHHHHHHHH
Confidence 4478899999999999999999999999886 4 67888876 999999999999999999987753
No 30
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.15 E-value=2.9e-10 Score=64.16 Aligned_cols=60 Identities=28% Similarity=0.242 Sum_probs=53.1
Q ss_pred HHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 78 FYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 78 ~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
+.+|+.+|++++|.|+.+|+..++..+ | .+.+++.. ++..+|.+++|.|++++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g--~~~~~~~~----i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-G--LPRSVLAQ----IWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-C--CCHHHHHH----HHHHhcCCCCCcCCHHHHHHHHHH
Confidence 468999999999999999999999887 5 47777776 999999999999999999988764
No 31
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.14 E-value=6e-10 Score=61.28 Aligned_cols=61 Identities=36% Similarity=0.630 Sum_probs=55.7
Q ss_pred HHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy1820 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142 (149)
Q Consensus 77 l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 142 (149)
+..+|+.+|.+++|.|+..++..++..+ +.+.+.+.+.. ++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEIDE----MIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHH----HHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999998 88888888876 9999999999999999999876
No 32
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.09 E-value=1e-09 Score=65.50 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=54.7
Q ss_pred HHHHHHhhH-hcCCCCC-cccHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 75 IKVFYAFKI-YDFDNDQ-YIGMSDLEIGIRLLT----RSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 75 ~~l~~~f~~-~D~~~~g-~I~~~el~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
..+..+|+. +|.+++| +|+..||+.++.... +...++.++++ +++.+|.|++|.|+|+||+.++..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~----ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDR----MMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHH----HHHHcCCCCCCcCcHHHHHHHHHH
Confidence 367889999 6787876 999999999997751 23556777876 999999999999999999998764
No 33
>KOG0028|consensus
Probab=99.06 E-value=4.6e-09 Score=67.80 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=83.6
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSE 119 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~ 119 (149)
..+.+.+++.+++|.|+++|+...+..+= -......+..+..-+|++++|.|+.++|+..+....+..-+.+++..
T Consensus 35 i~e~f~lfd~~~~g~iD~~EL~vAmralG-FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~--- 110 (172)
T KOG0028|consen 35 IKEAFELFDPDMAGKIDVEELKVAMRALG-FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKK--- 110 (172)
T ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcC-CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHH---
Confidence 45678888899999999999955543332 34456688889999999999999999999998765467779999986
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 120 KVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 120 ~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
+|+.+|-|++|.||..+|..++..
T Consensus 111 -afrl~D~D~~Gkis~~~lkrvake 134 (172)
T KOG0028|consen 111 -AFRLFDDDKTGKISQRNLKRVAKE 134 (172)
T ss_pred -HHHcccccCCCCcCHHHHHHHHHH
Confidence 999999999999999999998875
No 34
>KOG4223|consensus
Probab=99.06 E-value=1.7e-09 Score=76.99 Aligned_cols=127 Identities=17% Similarity=0.245 Sum_probs=90.4
Q ss_pred cccccccCHHHHHHHHHhhcccCCCCCch---HHHHHHhhcCCCCCceeHHHHHHHHHhhc-------cCC---ChH---
Q psy1820 11 VPVHKLITIAELRTMYLWKGLFSTQENPF---GQRICQVFSEDGQGNLNFEEFLELLSVFS-------EQA---SRD--- 74 (149)
Q Consensus 11 ~~~~~~~~~~el~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~g~I~~~ef~~~~~~~~-------~~~---~~~--- 74 (149)
.+.+||++..+|+.|....- ..-. ..+-+...+.+.+|.|+|+||+....... ... ...
T Consensus 88 ~~~Dgfv~~~El~~wi~~s~-----k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~ 162 (325)
T KOG4223|consen 88 SDSDGFVTESELKAWIMQSQ-----KKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMI 162 (325)
T ss_pred CCCCCceeHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHH
Confidence 46788888888888863322 2222 23444555668999999999999987532 011 111
Q ss_pred HHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCC
Q psy1820 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAP 146 (149)
Q Consensus 75 ~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 146 (149)
..-..-|+.-|.|++|.++++||..+|..--...|.+--+. ..+...|+|++|.|+++||+.=|...+
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~----Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIA----ETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHH----HHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 12356899999999999999999999876523344444444 488899999999999999999887654
No 35
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.02 E-value=2.5e-09 Score=66.74 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=51.8
Q ss_pred HHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
...+..+|..+|.|++|.|+..||..+. + . ..+..+. .++..+|.|++|.||++||...+.+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-~--~~e~~~~----~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L-D--PNEHCIK----PFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-c--chHHHHH----HHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 4588999999999999999999999876 3 1 2234444 4999999999999999999999954
No 36
>PF14658 EF-hand_9: EF-hand domain
Probab=98.99 E-value=3.5e-09 Score=58.80 Aligned_cols=62 Identities=27% Similarity=0.407 Sum_probs=55.4
Q ss_pred HHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCC-CceeHHHHHHHHhh
Q psy1820 79 YAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGD-GKLSFMEFEHVILR 144 (149)
Q Consensus 79 ~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-g~I~~~eF~~~l~~ 144 (149)
.+|..||+++.|.|....+..+|+.+++...++.++.. +.+..|+++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~----l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQD----LINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHH----HHHHhCCCCCCceEeHHHHHHHHHH
Confidence 37999999999999999999999999444777778886 8999999987 99999999999975
No 37
>PLN02964 phosphatidylserine decarboxylase
Probab=98.99 E-value=6.8e-09 Score=81.33 Aligned_cols=81 Identities=22% Similarity=0.388 Sum_probs=65.5
Q ss_pred HHHHHHhhcc-cCCCC-CchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHH
Q psy1820 22 LRTMYLWKGL-FSTQE-NPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEI 99 (149)
Q Consensus 22 l~~~~~~~~~-~~~~~-~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~ 99 (149)
++.+++.+|. .+... ...+.+++..+|.+++|.|++.||+.++..+. ....++.+..+|+.+|.+++|.|+.+||..
T Consensus 161 Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~ 239 (644)
T PLN02964 161 VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAA 239 (644)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHH
Confidence 7777888873 22111 11257888999999999999999999998764 445566899999999999999999999999
Q ss_pred HHHH
Q psy1820 100 GIRL 103 (149)
Q Consensus 100 ~l~~ 103 (149)
++..
T Consensus 240 vL~~ 243 (644)
T PLN02964 240 LLAL 243 (644)
T ss_pred HHHh
Confidence 9987
No 38
>KOG2643|consensus
Probab=98.97 E-value=2.3e-09 Score=79.06 Aligned_cols=137 Identities=21% Similarity=0.243 Sum_probs=93.9
Q ss_pred ccCCCCcccccccccCHHHHHHHHHhhccc-----CCCC----CchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCCh
Q psy1820 3 GVEPTTVRVPVHKLITIAELRTMYLWKGLF-----STQE----NPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASR 73 (149)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~el~~~~~~~~~~-----~~~~----~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~ 73 (149)
+|.|++|.|++++|.+.+.|...--..|.- ..+. .....-+...+.+++++++++++|+.++..++
T Consensus 242 FD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq----- 316 (489)
T KOG2643|consen 242 FDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENLQ----- 316 (489)
T ss_pred eecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHHH-----
Confidence 577899999999988877665432222220 0011 11223355667779999999999999998876
Q ss_pred HHHHHHHhhHhcCCCCCcccHHHHHHHHHHHc---------------------cCCCCHHHHHH----------------
Q psy1820 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLT---------------------RSELSVQELTQ---------------- 116 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~---------------------~~~~~~~~~~~---------------- 116 (149)
.+-+..-|..+|+..+|.|+..+|..+|-... +..++.+|...
T Consensus 317 ~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl~~l~dfd~Al~ 396 (489)
T KOG2643|consen 317 EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFKAFFRFLNNLNDFDIALR 396 (489)
T ss_pred HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHhhhhHHHHHHH
Confidence 55777888888888888888888887754321 22344444332
Q ss_pred -----------------------------HHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 117 -----------------------------VSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 117 -----------------------------~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
+++.+|..+|.|+||.|+++||+.+|++
T Consensus 397 fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 397 FYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 3444677888888999999999888874
No 39
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.97 E-value=2.8e-09 Score=60.01 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhhccC---CChHHHHHHHhhHhcCCCCCcccHHHHHHHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLSVFSEQ---ASRDIKVFYAFKIYDFDNDQYIGMSDLEIGI 101 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~---~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l 101 (149)
..+++..+|.+++|.|+.+|+..++..+... ......+..+|+.+|++++|.|+.+||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3578899999999999999999999876532 2233467777999999999999999998864
No 40
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.96 E-value=4.9e-09 Score=62.51 Aligned_cols=65 Identities=18% Similarity=0.362 Sum_probs=54.7
Q ss_pred HHHHHhhHhcCC--CCCcccHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 76 KVFYAFKIYDFD--NDQYIGMSDLEIGIRLLTRSELS----VQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 76 ~l~~~f~~~D~~--~~g~I~~~el~~~l~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.+...|+.|+.. .+|.|+..||+.++....+..++ ++++.. ++..+|.+++|.|+|++|+.++..
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~----i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDK----IFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHH----HHHHcCCCCCCcCcHHHHHHHHHH
Confidence 677899999976 48999999999999743255555 777776 999999999999999999998864
No 41
>KOG4666|consensus
Probab=98.88 E-value=5.1e-09 Score=74.75 Aligned_cols=103 Identities=18% Similarity=0.295 Sum_probs=89.2
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSE 119 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~ 119 (149)
...++.+++.+++|.++|.|++..+..+|+......-++.+|++|+...+|++...+|.-+++...| +..-.+..
T Consensus 261 l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~--- 335 (412)
T KOG4666|consen 261 LAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPV--- 335 (412)
T ss_pred hhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccc---
Confidence 4678899999999999999999999999988888889999999999999999999999999988633 33333333
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHhhCCCC
Q psy1820 120 KVIEEADVDGDGKLSFMEFEHVILRAPDS 148 (149)
Q Consensus 120 ~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 148 (149)
+|...+...+|+|++++|.+++..+|+|
T Consensus 336 -lf~~i~q~d~~ki~~~~f~~fa~~~p~~ 363 (412)
T KOG4666|consen 336 -LFPSIEQKDDPKIYASNFRKFAATEPNL 363 (412)
T ss_pred -cchhhhcccCcceeHHHHHHHHHhCchh
Confidence 7888888889999999999999999886
No 42
>KOG0037|consensus
Probab=98.78 E-value=1.6e-07 Score=63.74 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=82.2
Q ss_pred chHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHH
Q psy1820 38 PFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQV 117 (149)
Q Consensus 38 ~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~ 117 (149)
+.....+.-.|+++.|.|+-+|....++......-..+.++.+..+||.+.+|.|..+||+.+++.+. ...
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~Wr-- 127 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QWR-- 127 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HHH--
Confidence 35556777778899999999999999986665666677999999999999999999999999998872 233
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 118 SEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 118 ~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.+|..+|.|++|.|+..|+.+.|..
T Consensus 128 --~vF~~~D~D~SG~I~~sEL~~Al~~ 152 (221)
T KOG0037|consen 128 --NVFRTYDRDRSGTIDSSELRQALTQ 152 (221)
T ss_pred --HHHHhcccCCCCcccHHHHHHHHHH
Confidence 4999999999999999999988864
No 43
>KOG0377|consensus
Probab=98.74 E-value=1.8e-07 Score=69.52 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=55.8
Q ss_pred HHHHHHhhHhcCCCCCcccHHHHHHHHHHH---ccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLL---TRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 75 ~~l~~~f~~~D~~~~g~I~~~el~~~l~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
..+..+|+.+|.+++|.|+.+||+++++.+ ....++.+++.+ +...+|.|+||.|++.||+..+.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~----la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILE----LARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHH----HHHhhccCCCCcccHHHHHHHHh
Confidence 356789999999999999999999998776 244777888876 77789999999999999998875
No 44
>KOG0034|consensus
Probab=98.74 E-value=3.1e-07 Score=61.94 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=73.9
Q ss_pred HHHhhcCC-CCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCc-ccHHHHHHHHHHHccCCCCHH-HHHHHHH
Q psy1820 43 ICQVFSED-GQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQY-IGMSDLEIGIRLLTRSELSVQ-ELTQVSE 119 (149)
Q Consensus 43 i~~~~~~~-~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~-I~~~el~~~l~~~~~~~~~~~-~~~~~~~ 119 (149)
.+.-++.+ ++|.++.+||..+.....+. ....+++.++.+++|. |+.++|.+.+... ..+.+.+ .++
T Consensus 38 rF~kl~~~~~~g~lt~eef~~i~~~~~Np-----~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f-~~~~~~~~Kl~---- 107 (187)
T KOG0034|consen 38 RFKKLDRNNGDGYLTKEEFLSIPELALNP-----LADRIIDRFDTDGNGDPVDFEEFVRLLSVF-SPKASKREKLR---- 107 (187)
T ss_pred HHHHhccccccCccCHHHHHHHHHHhcCc-----HHHHHHHHHhccCCCCccCHHHHHHHHhhh-cCCccHHHHHH----
Confidence 33444455 89999999999998544422 5667999999999999 9999999999988 5555555 444
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 120 KVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 120 ~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.+|+.+|.+++|.|+.+|+..++..
T Consensus 108 faF~vYD~~~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 108 FAFRVYDLDGDGFISREELKQILRM 132 (187)
T ss_pred HHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 5999999999999999999988864
No 45
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.64 E-value=5e-08 Score=45.71 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.0
Q ss_pred HHHHhhHhcCCCCCcccHHHHHHHHHH
Q psy1820 77 VFYAFKIYDFDNDQYIGMSDLEIGIRL 103 (149)
Q Consensus 77 l~~~f~~~D~~~~g~I~~~el~~~l~~ 103 (149)
+..+|+.+|+|++|+|+.+||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567889999999999999999888865
No 46
>KOG0031|consensus
Probab=98.63 E-value=4.1e-07 Score=58.56 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=50.3
Q ss_pred HHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHH-----------------------------HHHHHHHHhC
Q psy1820 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQ-----------------------------VSEKVIEEAD 126 (149)
Q Consensus 76 ~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~d 126 (149)
++..||.++|.|++|.|+.++|+..+..+ |...++++++. .+-.+|+.+|
T Consensus 33 EfKEAF~~mDqnrDG~IdkeDL~d~~aSl-Gk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD 111 (171)
T KOG0031|consen 33 EFKEAFNLMDQNRDGFIDKEDLRDMLASL-GKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFD 111 (171)
T ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcC
Confidence 66677777777777777777777777777 66677766664 3445788888
Q ss_pred CCCCCceeHHHHHHHHhh
Q psy1820 127 VDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 127 ~~~~g~I~~~eF~~~l~~ 144 (149)
.++.|.|.-+.+..+|..
T Consensus 112 ~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 112 DEGSGKIDEDYLRELLTT 129 (171)
T ss_pred ccCCCccCHHHHHHHHHH
Confidence 888888888888877764
No 47
>KOG2643|consensus
Probab=98.61 E-value=1.3e-07 Score=70.12 Aligned_cols=90 Identities=24% Similarity=0.349 Sum_probs=62.3
Q ss_pred CCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHc-----cC--------CCCHH-HHH
Q psy1820 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLT-----RS--------ELSVQ-ELT 115 (149)
Q Consensus 50 ~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~-----~~--------~~~~~-~~~ 115 (149)
+.+|.|+|.||+-++..+... +...+.||++||.|++|.|+.+||..+.+-+. +. ..+-. ++.
T Consensus 211 g~~GLIsfSdYiFLlTlLS~p---~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~n 287 (489)
T KOG2643|consen 211 GESGLISFSDYIFLLTLLSIP---ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVN 287 (489)
T ss_pred CCCCeeeHHHHHHHHHHHccC---cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhh
Confidence 567999999999888877622 23667899999999999999999998874330 11 00111 111
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 116 QVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 116 ~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
. .-...-+++++++.+++++|.+++.+
T Consensus 288 s--aL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 288 S--ALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred h--hHHHHhhccCCCccccHHHHHHHHHH
Confidence 1 01233477888888999888888764
No 48
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.61 E-value=3e-07 Score=49.53 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=41.1
Q ss_pred CCceeHHHHHHHHHhhccCC-ChHHHHHHHhhHhcCCCCCcccHHHHHHHHHH
Q psy1820 52 QGNLNFEEFLELLSVFSEQA-SRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRL 103 (149)
Q Consensus 52 ~g~I~~~ef~~~~~~~~~~~-~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~ 103 (149)
+|.|+.++|..++..+- .. .....+..+|..+|.+++|.|+.+||..++..
T Consensus 2 ~G~i~~~~~~~~l~~~g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLG-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTT-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhC-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 68899999999985443 33 55667999999999999999999999988753
No 49
>KOG0041|consensus
Probab=98.57 E-value=4.9e-07 Score=60.68 Aligned_cols=65 Identities=34% Similarity=0.433 Sum_probs=57.6
Q ss_pred HHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 75 ~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
..+...|+.||.+.+|+|++.||+..|..+ |.+-+.--+++ +++..|.|.+|.|++-||+=++.+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~----mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKN----MIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHh-CCchhhHHHHH----HHHHhhcccccchhHHHHHHHHHH
Confidence 367889999999999999999999999999 77777666665 999999999999999999877654
No 50
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.56 E-value=6.2e-07 Score=48.88 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=51.1
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHH
Q psy1820 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGI 101 (149)
Q Consensus 41 ~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l 101 (149)
..++..++.+++|.|++++|..++.... .......+..+|+.+|.+++|.|+.++|..++
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4577888889999999999999988765 44455688889999999999999999998765
No 51
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.53 E-value=8.2e-07 Score=52.91 Aligned_cols=66 Identities=21% Similarity=0.118 Sum_probs=54.3
Q ss_pred hHHHHHHhhcC-CCCCceeHHHHHHHHHhhccCCChH-HHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 39 FGQRICQVFSE-DGQGNLNFEEFLELLSVFSEQASRD-IKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 39 ~~~~i~~~~~~-~~~g~I~~~ef~~~~~~~~~~~~~~-~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
....++..++. +++|.|+..|+..++....+..-.. ..+..+++..|.|++|.|+++||..++..+
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 34578888998 9999999999999998733222223 689999999999999999999999988766
No 52
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.52 E-value=1.4e-06 Score=51.77 Aligned_cols=63 Identities=19% Similarity=0.369 Sum_probs=50.5
Q ss_pred HHHHHhhHhcCCCCCcccHHHHHHHHHHH----ccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLL----TRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 76 ~l~~~f~~~D~~~~g~I~~~el~~~l~~~----~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
.+...|..|. ...+.++..||+.+|..- .+..-.+..++. +|+..|.|+||.|+|+||+.++.
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~----im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDK----IMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHH----HHHHhCCCCCCcCcHHHHHHHHH
Confidence 6778999998 446799999999998542 233445666665 99999999999999999988765
No 53
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.50 E-value=3e-07 Score=43.02 Aligned_cols=25 Identities=40% Similarity=0.773 Sum_probs=23.2
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 120 KVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 120 ~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.+|+.+|.|++|.|+++||..+|.+
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4999999999999999999999875
No 54
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.48 E-value=1.9e-06 Score=51.29 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=54.8
Q ss_pred hHHHHHHhhc-CCCCC-ceeHHHHHHHHHh----hccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 39 FGQRICQVFS-EDGQG-NLNFEEFLELLSV----FSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 39 ~~~~i~~~~~-~~~~g-~I~~~ef~~~~~~----~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
...+++..++ ++++| .|+..|+..++.. +......+..+..+++..|.+++|.|+..||..++..+
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4467888997 68999 6999999999987 23344556679999999999999999999999888765
No 55
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.47 E-value=1.6e-06 Score=48.52 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=51.6
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 41 ~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
.+++..+|.+++|.|+..|+..++... +. ....+..+|+.+|.+++|.|+.+||..++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~--g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS--GL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc--CC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 356788899999999999999988654 22 45578999999999999999999999988765
No 56
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.46 E-value=2.5e-06 Score=51.59 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=53.1
Q ss_pred hHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 39 FGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 39 ~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
...+++..+|.+++|.|+.+++..++... + .....+..+|+.+|.+++|.|+.+||..++..+
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~-~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS--G-LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc--C-CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 34578888999999999999999998663 2 345588999999999999999999999988654
No 57
>KOG0036|consensus
Probab=98.44 E-value=4.5e-06 Score=61.73 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=80.5
Q ss_pred hHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHH
Q psy1820 39 FGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVS 118 (149)
Q Consensus 39 ~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~ 118 (149)
....+++.+|.+++|.|+..+....+..+....+..+.....|+..|.|.+|.++..||+..+... +.++.
T Consensus 15 r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E~~l~--- 85 (463)
T KOG0036|consen 15 RIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ELELY--- 85 (463)
T ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------HHHHH---
Confidence 445678888889999999999999988877444566688999999999999999999999999765 33444
Q ss_pred HHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 119 EKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 119 ~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.+|+..|.+.||.|+-+|.-+.+..
T Consensus 86 -~~F~~iD~~hdG~i~~~Ei~~~l~~ 110 (463)
T KOG0036|consen 86 -RIFQSIDLEHDGKIDPNEIWRYLKD 110 (463)
T ss_pred -HHHhhhccccCCccCHHHHHHHHHH
Confidence 3999999999999999998887764
No 58
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.44 E-value=2.4e-06 Score=51.44 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=52.3
Q ss_pred HHHHHHhhc-CCCCC-ceeHHHHHHHHHhhc----cCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 40 GQRICQVFS-EDGQG-NLNFEEFLELLSVFS----EQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 40 ~~~i~~~~~-~~~~g-~I~~~ef~~~~~~~~----~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
..+++..++ ++++| +|+..|+..++.... ........+..+++.+|.+++|.|+.+||..++..+
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 345677787 57888 699999999996632 123345689999999999999999999999998876
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.38 E-value=5.9e-07 Score=42.74 Aligned_cols=29 Identities=34% Similarity=0.589 Sum_probs=25.0
Q ss_pred HHHHHhhHhcCCCCCcccHHHHHHHHH-HH
Q psy1820 76 KVFYAFKIYDFDNDQYIGMSDLEIGIR-LL 104 (149)
Q Consensus 76 ~l~~~f~~~D~~~~g~I~~~el~~~l~-~~ 104 (149)
+++.+|+.+|.+++|.|+.+||..++. .+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 367899999999999999999999998 45
No 60
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.38 E-value=4e-06 Score=50.27 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=54.5
Q ss_pred hHHHHHHhhc-CCCCC-ceeHHHHHHHHHh-h---ccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 39 FGQRICQVFS-EDGQG-NLNFEEFLELLSV-F---SEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 39 ~~~~i~~~~~-~~~~g-~I~~~ef~~~~~~-~---~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
...+++.+++ .+++| .|+..|+..++.. + .+..+....+..+|+.+|.+++|.|+.++|..++..+
T Consensus 10 ~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 10 TLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4567899996 89999 5999999999965 2 1123456689999999999999999999999988766
No 61
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.37 E-value=2.9e-06 Score=50.39 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=53.5
Q ss_pred HHHHHHhhcC--CCCCceeHHHHHHHHHhhccCC----ChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 40 GQRICQVFSE--DGQGNLNFEEFLELLSVFSEQA----SRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 40 ~~~i~~~~~~--~~~g~I~~~ef~~~~~~~~~~~----~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
..+++..++. +++|.|+..++..++....+.. .....+..+++.+|.+++|.|+.++|..++...
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4567889999 7999999999999986533221 235689999999999999999999999988765
No 62
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.37 E-value=2.4e-06 Score=63.95 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=51.2
Q ss_pred hccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 67 FSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 67 ~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
+.+.......+..+|+.+|.+++|.|+.+||.. ++ .+|..+|.|++|.|+++||.+.+..
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~----~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SD----AVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HH----HHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 444667778899999999999999999999941 23 3899999999999999999998864
No 63
>KOG0030|consensus
Probab=98.32 E-value=2.9e-06 Score=53.79 Aligned_cols=67 Identities=21% Similarity=0.207 Sum_probs=53.7
Q ss_pred ChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCC--CCCceeHHHHHHHHh
Q psy1820 72 SRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVD--GDGKLSFMEFEHVIL 143 (149)
Q Consensus 72 ~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~g~I~~~eF~~~l~ 143 (149)
+...+++.+|..||..++|.|+..+..++|+.+ |.+.++.++.. .+.....+ +--+|+|++|+-++.
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-G~nPT~aeV~k----~l~~~~~~~~~~~rl~FE~fLpm~q 76 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-GQNPTNAEVLK----VLGQPKRREMNVKRLDFEEFLPMYQ 76 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHh-cCCCcHHHHHH----HHcCcccchhhhhhhhHHHHHHHHH
Confidence 344688999999999999999999999999999 89999988875 66655555 235677777776654
No 64
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.31 E-value=6.4e-06 Score=49.59 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=52.7
Q ss_pred HHHHHHhhcC-CC-CCceeHHHHHHHHHhhc----cCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 40 GQRICQVFSE-DG-QGNLNFEEFLELLSVFS----EQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 40 ~~~i~~~~~~-~~-~g~I~~~ef~~~~~~~~----~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
..+++..++. ++ +|.|+..|+..++.... ........+..+++.+|.+++|.|+.++|..++...
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4567888886 87 69999999999986522 123445689999999999999999999999988765
No 65
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.30 E-value=4.8e-06 Score=52.02 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=48.4
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGI 101 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l 101 (149)
..-.+..+|.|++|.|+.+|+..+. ....+..+...|+.+|.|++|.||.+|+..++
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3457788899999999999999876 22335577889999999999999999999988
No 66
>KOG0751|consensus
Probab=98.26 E-value=3.9e-06 Score=63.46 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=61.7
Q ss_pred cccccCHHHHHHHHHhhcccCC-CCCc-hHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCC
Q psy1820 13 VHKLITIAELRTMYLWKGLFST-QENP-FGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQ 90 (149)
Q Consensus 13 ~~~~~~~~el~~~~~~~~~~~~-~~~~-~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g 90 (149)
.+.+++.++|-..+ +|++.. +.++ +..-+..+.|...||.|+|+||..+-..+|.. ......+|+.||+.++|
T Consensus 49 ge~~mt~edFv~~y--lgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p---Dal~~~aFqlFDr~~~~ 123 (694)
T KOG0751|consen 49 GESYMTPEDFVRRY--LGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP---DALFEVAFQLFDRLGNG 123 (694)
T ss_pred cccccCHHHHHHHH--HhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc---hHHHHHHHHHhcccCCC
Confidence 34455566665554 444321 2333 33344455566789999999999999888844 44778899999999999
Q ss_pred cccHHHHHHHHHHH
Q psy1820 91 YIGMSDLEIGIRLL 104 (149)
Q Consensus 91 ~I~~~el~~~l~~~ 104 (149)
.++.+++.+++...
T Consensus 124 ~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 124 EVSFEDVADIFGQT 137 (694)
T ss_pred ceehHHHHHHHhcc
Confidence 99999999987653
No 67
>KOG2562|consensus
Probab=98.26 E-value=1.4e-05 Score=59.95 Aligned_cols=119 Identities=13% Similarity=0.272 Sum_probs=82.1
Q ss_pred cccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcC----CCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCC
Q psy1820 13 VHKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSE----DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDN 88 (149)
Q Consensus 13 ~~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~ 88 (149)
.+++++.++|+..--... .....++|+..... -.+|+++|++|+.++-..-.+.. ..-+.--|+.+|-++
T Consensus 291 hd~lidk~~L~ry~d~tl-----t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t-~~SleYwFrclDld~ 364 (493)
T KOG2562|consen 291 HDGLIDKEDLKRYGDHTL-----TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDT-PASLEYWFRCLDLDG 364 (493)
T ss_pred cccccCHHHHHHHhccch-----hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCC-ccchhhheeeeeccC
Confidence 355566666664432222 34456777773322 45788999999999877763333 346777899999999
Q ss_pred CCcccHHHHHHHHHH-------HccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy1820 89 DQYIGMSDLEIGIRL-------LTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEH 140 (149)
Q Consensus 89 ~g~I~~~el~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 140 (149)
+|.++..|++-+... .+-..++-+++.. .++..+.+...++|+.++|.+
T Consensus 365 ~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~---qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 365 DGILTLNELRYFYEEQLQRMECMGQEALPFEDALC---QIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHH---HHHHHhCccCCCceeHHHHhh
Confidence 999999999887543 2233455554443 578888878889999999976
No 68
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.20 E-value=2e-05 Score=48.31 Aligned_cols=64 Identities=28% Similarity=0.255 Sum_probs=52.0
Q ss_pred ChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 72 SRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 72 ~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
.........|+..|. ++|.|+..+.+.++... +++.+.+.. ++...|.+++|.++++||+-+|.
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~----IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQ----IWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHH----HHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHH----HHhhhcCCCCCcCCHHHHHHHHH
Confidence 345577888998885 68999999999988765 688888886 99999999999999999976543
No 69
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.18 E-value=1.8e-05 Score=47.07 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=49.9
Q ss_pred HHHHhhcC-CC-CCceeHHHHHHHHHhh--ccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 42 RICQVFSE-DG-QGNLNFEEFLELLSVF--SEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 42 ~i~~~~~~-~~-~g~I~~~ef~~~~~~~--~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
.++..++. ++ +|.|+..||..++... .......+.+..+++.+|.+++|.|+..||..++..+
T Consensus 14 ~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 14 AIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 45555554 55 8899999999999642 2333456789999999999999999999999988766
No 70
>KOG0040|consensus
Probab=98.18 E-value=6.7e-05 Score=63.40 Aligned_cols=121 Identities=12% Similarity=0.208 Sum_probs=92.4
Q ss_pred ccccCHHHHHHHHHhhcccC-C----CCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhc-cCCChHHHHHHHhhHhcCC
Q psy1820 14 HKLITIAELRTMYLWKGLFS-T----QENPFGQRICQVFSEDGQGNLNFEEFLELLSVFS-EQASRDIKVFYAFKIYDFD 87 (149)
Q Consensus 14 ~~~~~~~el~~~~~~~~~~~-~----~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~-~~~~~~~~l~~~f~~~D~~ 87 (149)
.|-+++++|+..++++|+.- . .++|..+++..++|++.+|.|+..+|..+|...- ..-.....+..||+.+|.
T Consensus 2267 ~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a- 2345 (2399)
T KOG0040|consen 2267 NGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA- 2345 (2399)
T ss_pred ccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-
Confidence 44556788999999999743 2 4677999999999999999999999999986532 122223489999999999
Q ss_pred CCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCC----CCCceeHHHHHHHHh
Q psy1820 88 NDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVD----GDGKLSFMEFEHVIL 143 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~g~I~~~eF~~~l~ 143 (149)
+..+|+.+++.. .+++++++-++..|-..+++. -.+.|.|.+|++.+.
T Consensus 2346 ~~~yvtke~~~~--------~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2346 GKPYVTKEELYQ--------NLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred CCccccHHHHHh--------cCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHHh
Confidence 889999998865 356777776555566666663 246799999998764
No 71
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.17 E-value=2.4e-05 Score=46.64 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=49.9
Q ss_pred HHHHHh-hcCCCCC-ceeHHHHHHHHHhhc----cCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 41 QRICQV-FSEDGQG-NLNFEEFLELLSVFS----EQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 41 ~~i~~~-~~~~~~g-~I~~~ef~~~~~~~~----~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
..++.. .++++++ .|+.+||..++.... ........+..+++.+|.|++|.|+.+||..++..+
T Consensus 12 ~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 12 IAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 345555 5566765 999999999998753 223345688899999999999999999999988766
No 72
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.13 E-value=4e-06 Score=37.79 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.2
Q ss_pred HHHHhhHhcCCCCCcccHHHHHHHH
Q psy1820 77 VFYAFKIYDFDNDQYIGMSDLEIGI 101 (149)
Q Consensus 77 l~~~f~~~D~~~~g~I~~~el~~~l 101 (149)
++.+|+.+|.|++|.|+.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568888999999999999888753
No 73
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.09 E-value=2.1e-05 Score=41.41 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 92 IGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 92 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
++..|++.+|+.+ +..+++.-+.. +|+..|.+++|.+..+||..++..
T Consensus 2 msf~Evk~lLk~~-NI~~~~~yA~~----LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMM-NIEMDDEYARQ----LFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHT-T----HHHHHH----HHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-ccCcCHHHHHH----HHHHhcccCCCCccHHHHHHHHHH
Confidence 6789999999999 88888877775 999999999999999999998763
No 74
>PF14658 EF-hand_9: EF-hand domain
Probab=98.04 E-value=4.4e-05 Score=42.50 Aligned_cols=61 Identities=8% Similarity=0.166 Sum_probs=53.5
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCC-CcccHHHHHHHHHH
Q psy1820 43 ICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDND-QYIGMSDLEIGIRL 103 (149)
Q Consensus 43 i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~-g~I~~~el~~~l~~ 103 (149)
.+.++|..+.|.|....++.++..+..+.+.+..++.+.+.+|+++. |.|+++.|..+|+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 56788888999999999999998887557778899999999999988 99999999998864
No 75
>KOG4251|consensus
Probab=97.99 E-value=7.2e-06 Score=56.95 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=77.6
Q ss_pred CCchHHHHHHhhcCCCCCceeHHHHHHHHHhhcc---CCC-----hHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccC
Q psy1820 36 ENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSE---QAS-----RDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS 107 (149)
Q Consensus 36 ~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~---~~~-----~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~ 107 (149)
......+|.+.+|++++.+++..+|+........ ... .+...+..=..+|.|.+|.+|.+|+..++... ..
T Consensus 234 LrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~-n~ 312 (362)
T KOG4251|consen 234 LRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQ-NF 312 (362)
T ss_pred HHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCch-hh
Confidence 3445678999999999999999999987643211 111 12233444567899999999999999998777 67
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy1820 108 ELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHV 141 (149)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 141 (149)
.+.-.++.. ++...|.+++..++.++.+..
T Consensus 313 ~~alne~~~----~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 313 RLALNEVND----IMALTDANNDEKLSLEELLER 342 (362)
T ss_pred hhhHHHHHH----HHhhhccCCCcccCHHHHHHH
Confidence 777778776 888899999999999998653
No 76
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.95 E-value=2.2e-05 Score=35.34 Aligned_cols=23 Identities=43% Similarity=0.884 Sum_probs=20.9
Q ss_pred HHHHHhCCCCCCceeHHHHHHHH
Q psy1820 120 KVIEEADVDGDGKLSFMEFEHVI 142 (149)
Q Consensus 120 ~~~~~~d~~~~g~I~~~eF~~~l 142 (149)
.+|+.+|.|++|.|+++||.+++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHC
Confidence 48999999999999999999864
No 77
>KOG4065|consensus
Probab=97.93 E-value=6.2e-05 Score=46.30 Aligned_cols=68 Identities=24% Similarity=0.390 Sum_probs=55.0
Q ss_pred HHHHHHHhhHhcCCCCCcccHHHHHHHHHHHc-----c----CCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy1820 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLT-----R----SELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHV 141 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~-----~----~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 141 (149)
++.-...|.+.|-+++|.++--|+..+++-.- | +-+++.|++.+++.+++.-|.|++|.|+|.||++.
T Consensus 66 eqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 66 EQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 33334589999999999999999999886430 1 13567788888999999999999999999999875
No 78
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.88 E-value=0.00011 Score=43.76 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=44.2
Q ss_pred CCCceeHHHHHHHHHhhccCCCh----HHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 51 GQGNLNFEEFLELLSVFSEQASR----DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 51 ~~g~I~~~ef~~~~~~~~~~~~~----~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
.+|.|+..|+..++....+.... ...+..+|+.+|.+++|.|+.+||..++..+
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 47899999999999743322222 5689999999999999999999999988765
No 79
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.86 E-value=2.1e-05 Score=46.82 Aligned_cols=54 Identities=13% Similarity=0.208 Sum_probs=36.6
Q ss_pred ccccccccC--HHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhc
Q psy1820 10 RVPVHKLIT--IAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFS 68 (149)
Q Consensus 10 ~~~~~~~~~--~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~ 68 (149)
.+++.++.. ..||..++.... .....+++++.+|.|+||.|+|+||+.++..+.
T Consensus 23 tLsk~Elk~Ll~~Elp~~l~~~~-----d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 23 YLNRDDLQKLMEKEFSEFLKNQN-----DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred cCCHHHHHHHHHHHhHHHHcCCC-----CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 444444444 234444443322 445678899999999999999999999987654
No 80
>KOG0377|consensus
Probab=97.81 E-value=0.00012 Score=55.00 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=58.7
Q ss_pred CchHHHHHHhhcCCCCCceeHHHHHHHHHhhc---cCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 37 NPFGQRICQVFSEDGQGNLNFEEFLELLSVFS---EQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 37 ~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~---~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
..+..-|+.++|.+.+|.|+.+||..++..+. +..-..+.+...-+.+|-|++|.|++.||..++...
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 44677899999999999999999999987654 355566788899999999999999999999988765
No 81
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.74 E-value=0.00023 Score=37.44 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=37.5
Q ss_pred ceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 54 NLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 54 ~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
+++|.|...++..+. -.-....+..+|+..|++++|.+..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 367888888776554 55556688899999999999999999999988765
No 82
>KOG0040|consensus
Probab=97.73 E-value=9.1e-05 Score=62.67 Aligned_cols=65 Identities=17% Similarity=0.359 Sum_probs=56.1
Q ss_pred HHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCC--CHH-----HHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhC
Q psy1820 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSEL--SVQ-----ELTQVSEKVIEEADVDGDGKLSFMEFEHVILRA 145 (149)
Q Consensus 76 ~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~--~~~-----~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 145 (149)
+...+|+.||++++|.++..+|..+|+.+ |..+ .++ ++++ ++...|++.+|.|+.++|+++|-+.
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrsl-gY~lpmvEe~~~~p~fe~----~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSL-GYDLPMVEEGEPEPEFEE----ILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhc-CCCCcccccCCCChhHHH----HHHhcCCCCcCcccHHHHHHHHHhc
Confidence 45679999999999999999999999998 6644 333 5665 9999999999999999999999764
No 83
>KOG4251|consensus
Probab=97.73 E-value=0.00016 Score=50.48 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhhccC--CChHHHHHHHhhHhcCCCCCcccHHHHHHHHHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLSVFSEQ--ASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRL 103 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~--~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~ 103 (149)
...|+...|.|.++.|+-.|...++...+.. ....+.-...|+..|++++|.|+++|++--+..
T Consensus 103 lmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 103 LMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 3456666666889999999999888654411 011123456799999999999999998865443
No 84
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.72 E-value=0.00012 Score=55.07 Aligned_cols=54 Identities=24% Similarity=0.386 Sum_probs=46.2
Q ss_pred CchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 37 NPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 37 ~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
......+++++|.+++|.|+.+||+. +..+|+.+|.|++|.|+.+||.+++...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 33456788999999999999999952 3568999999999999999999988754
No 85
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.71 E-value=0.00042 Score=40.57 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=51.0
Q ss_pred HHHHhhHhcCCCCCcccHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCC
Q psy1820 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS-ELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAP 146 (149)
Q Consensus 77 l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 146 (149)
+..+|+.|.. +.+.|+.++|...|..-.+. ..+.+++..++...-........+.++.++|.++|....
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 5678999966 89999999999999877555 578888887443332222223478999999999998654
No 86
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.62 E-value=0.00014 Score=34.30 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.0
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 120 KVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 120 ~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.+|..+|.+++|.|+.+||.+++.+
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4899999999999999999999873
No 87
>KOG4666|consensus
Probab=97.56 E-value=9.9e-05 Score=53.32 Aligned_cols=117 Identities=12% Similarity=0.006 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHH
Q psy1820 19 IAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLE 98 (149)
Q Consensus 19 ~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~ 98 (149)
+.+|.+.-|.+++...|....+.+...+...-+.+.|-..||...+ .-+..+.+...|-+||.+++|.++..|-.
T Consensus 208 l~eF~~~~r~lkL~~~gl~k~ld~y~~var~~kg~~igi~efa~~l-----~vpvsd~l~~~f~LFde~~tg~~D~re~v 282 (412)
T KOG4666|consen 208 LPEFVAKRRVLKLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNL-----RVPVSDKLAPTFMLFDEGTTGNGDYRETV 282 (412)
T ss_pred hHHHHHHHhccCCChHHHHHHHhhHHHHHHhccCCCcceeEeeeee-----ecchhhhhhhhhheecCCCCCcccHHHHh
Confidence 5667766666665444433344444444443455666666666444 22334688999999999999999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 99 IGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
..+..+.+...++.-+.- .|+.++.+.||.+.-++|.-+|..
T Consensus 283 ~~lavlc~p~~t~~iiq~----afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 283 KTLAVLCGPPVTPVIIQY----AFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhheeeeCCCCcHHHHHH----HHHhcccccccccchHHHHHHHHH
Confidence 988888788888887775 999999999999999888766653
No 88
>KOG0046|consensus
Probab=97.52 E-value=0.0004 Score=53.22 Aligned_cols=63 Identities=25% Similarity=0.474 Sum_probs=52.4
Q ss_pred HHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCC---CHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSEL---SVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 76 ~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.+...|...| +++|+|+..++..++... +... ..++++ .++...+.|.+|.|++++|+..+..
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~-~~~~g~~~~eei~----~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKA-KLPLGYFVREEIK----EILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHh-cccccchhHHHHH----HHHhccCCCcCCccCHHHHHHHHHh
Confidence 6778999999 999999999999999987 4333 345555 4999999999999999999996653
No 89
>KOG0751|consensus
Probab=97.51 E-value=0.0006 Score=52.02 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=63.7
Q ss_pred CCchHHHHHHhhcCCCCCceeHHHHHHHHHhhcc----------------------------------CCChHHHHHHHh
Q psy1820 36 ENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSE----------------------------------QASRDIKVFYAF 81 (149)
Q Consensus 36 ~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~----------------------------------~~~~~~~l~~~f 81 (149)
.+......+.++|+.++|.|+++++..++....- ..-..+..+.+|
T Consensus 106 pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qaf 185 (694)
T KOG0751|consen 106 PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAF 185 (694)
T ss_pred chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666665543210 001134567899
Q ss_pred hHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHH
Q psy1820 82 KIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139 (149)
Q Consensus 82 ~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~ 139 (149)
+..|+.++|.|+.-+++.++.+. ..++....+++ .+......+....+|+..|.
T Consensus 186 r~~d~~~ng~is~Ldfq~imvt~-~~h~lt~~v~~---nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 186 REKDKAKNGFISVLDFQDIMVTI-RIHLLTPFVEE---NLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHhcccCCCeeeeechHhhhhhh-hhhcCCHHHhh---hhhhhcCCCCccccchHHHH
Confidence 99999999999999999999887 55666666654 23444444445566666654
No 90
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.50 E-value=5.6e-05 Score=47.08 Aligned_cols=62 Identities=24% Similarity=0.243 Sum_probs=43.1
Q ss_pred ChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy1820 72 SRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEH 140 (149)
Q Consensus 72 ~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 140 (149)
.....+...|..+|.|++|.|+..|+..+...+ ...+.-+. .++...|.|+||.||..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~----~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCAR----PFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHH----HHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHH----HHHHHcCCCCCCCCCHHHHcc
Confidence 345578889999999999999999999876544 12222334 489999999999999999875
No 91
>KOG1029|consensus
Probab=97.49 E-value=0.0012 Score=52.94 Aligned_cols=120 Identities=25% Similarity=0.360 Sum_probs=92.6
Q ss_pred ccccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhc----c------------------
Q psy1820 12 PVHKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFS----E------------------ 69 (149)
Q Consensus 12 ~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~----~------------------ 69 (149)
+..+|++-..-+.+|.-.|+ ..+.+..|+.+.|-|.||+++..||...|.... .
T Consensus 27 p~~gfitg~qArnfflqS~L----P~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~lP~~LPPsll~~~~~~ 102 (1118)
T KOG1029|consen 27 PGQGFITGDQARNFFLQSGL----PTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQLPPVLPPSLLKQPPRN 102 (1118)
T ss_pred CCCCccchHhhhhhHHhcCC----ChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCcCCCCCChHHhccCCcC
Confidence 44567776666666655553 567889999999999999999999998876311 0
Q ss_pred --------------------------------------------------------------------------------
Q psy1820 70 -------------------------------------------------------------------------------- 69 (149)
Q Consensus 70 -------------------------------------------------------------------------------- 69 (149)
T Consensus 103 ~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ss~se~~~~~~s~~ 182 (1118)
T KOG1029|consen 103 APSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHDSSVSEGRPSIESVN 182 (1118)
T ss_pred CCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCcchhhcCccchhhh
Confidence
Q ss_pred -------CCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy1820 70 -------QASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142 (149)
Q Consensus 70 -------~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 142 (149)
....+-+.+..|+.+|+...|+++-..-+.+|... .++...+.. |+...|.|+||.++-+||+=.|
T Consensus 183 q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS---~Lpq~~LA~----IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 183 QLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS---GLPQNQLAH----IWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhc---CCchhhHhh----heeeeccCCCCcccHHHHHHHH
Confidence 00112356889999999999999999999998866 477777765 8889999999999999996544
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.18 E-value=0.00076 Score=30.19 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred HHHHhhHhcCCCCCcccHHHHHHHHHH
Q psy1820 77 VFYAFKIYDFDNDQYIGMSDLEIGIRL 103 (149)
Q Consensus 77 l~~~f~~~D~~~~g~I~~~el~~~l~~ 103 (149)
+..+|+.+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456788888888888888888877653
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.89 E-value=0.0024 Score=28.39 Aligned_cols=25 Identities=36% Similarity=0.651 Sum_probs=22.5
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 120 KVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 120 ~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
.+|+.+|.+++|.|++.+|..++..
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 4899999999999999999998864
No 94
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.89 E-value=0.0033 Score=38.54 Aligned_cols=59 Identities=20% Similarity=0.358 Sum_probs=42.7
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 42 RICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 42 ~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
.++..++ ..+|.|+-.+-..++..- +.+.. .+..+|.+.|.+++|+++.+||..+|.-+
T Consensus 14 ~~F~~l~-~~~g~isg~~a~~~f~~S--~L~~~-~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 14 QIFQSLD-PQDGKISGDQAREFFMKS--GLPRD-VLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHCTS-SSTTEEEHHHHHHHHHHT--TSSHH-HHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHhcC-CCCCeEeHHHHHHHHHHc--CCCHH-HHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4555455 457889888888877543 45543 78889999999999999999988877643
No 95
>PLN02952 phosphoinositide phospholipase C
Probab=96.86 E-value=0.023 Score=45.16 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=67.1
Q ss_pred CCCceeHHHHHHHHHhhc-cCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHhC--
Q psy1820 51 GQGNLNFEEFLELLSVFS-EQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS-ELSVQELTQVSEKVIEEAD-- 126 (149)
Q Consensus 51 ~~g~I~~~ef~~~~~~~~-~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d-- 126 (149)
..|.++|++|..+...+. .....+..+..+|..+-.+ .+.++.++|..+|....+. ..+.+++..++..++....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 468999999988776654 2334566899999999654 4789999999999987554 3667777765554443322
Q ss_pred -CCCCCceeHHHHHHHHhh
Q psy1820 127 -VDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 127 -~~~~g~I~~~eF~~~l~~ 144 (149)
....+.++.+.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 123456999999999975
No 96
>KOG0041|consensus
Probab=96.75 E-value=0.029 Score=38.23 Aligned_cols=97 Identities=18% Similarity=0.273 Sum_probs=66.5
Q ss_pred hHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHH-HHHH
Q psy1820 39 FGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQE-LTQV 117 (149)
Q Consensus 39 ~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~-~~~~ 117 (149)
....++..+|.+.||.|++.|+..+|..+- -+...-.+..+.+..|.|.+|.|+..||.-++.......+..+. +..+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg-apQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~L 178 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLG-APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRL 178 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhC-CchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHH
Confidence 345678888889999999999999998775 33344478889999999999999999999888765333444432 2211
Q ss_pred HHHHHHHhCCCCCCceeHHHH
Q psy1820 118 SEKVIEEADVDGDGKLSFMEF 138 (149)
Q Consensus 118 ~~~~~~~~d~~~~g~I~~~eF 138 (149)
+ -....|....|..--..|
T Consensus 179 A--r~~eVDVskeGV~GAknF 197 (244)
T KOG0041|consen 179 A--RLSEVDVSKEGVSGAKNF 197 (244)
T ss_pred H--HhcccchhhhhhhhHHHH
Confidence 1 122245555555444444
No 97
>KOG0038|consensus
Probab=96.39 E-value=0.022 Score=36.87 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=49.6
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHH----hhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYA----FKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 41 ~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~----f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
.-.++++|-|+++.|--.++...+..+.+..-..+++..+ ...-|.+++|.++..||.+.+...
T Consensus 111 ~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 111 KYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred hheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 3456777889999999999998888887666665555544 444589999999999999987543
No 98
>KOG2562|consensus
Probab=96.33 E-value=0.023 Score=43.28 Aligned_cols=98 Identities=20% Similarity=0.305 Sum_probs=63.4
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHH-----hhccCCCh-----------HHHHHHHhhHhcCCCCCcccHHHHHHHHHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLS-----VFSEQASR-----------DIKVFYAFKIYDFDNDQYIGMSDLEIGIRL 103 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~-----~~~~~~~~-----------~~~l~~~f~~~D~~~~g~I~~~el~~~l~~ 103 (149)
..+|+=.+++.+.|.|+..+.+..-. .+...... --.+..-|-.+|++++|.|+.++|...-..
T Consensus 227 i~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~ 306 (493)
T KOG2562|consen 227 IQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH 306 (493)
T ss_pred hhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc
Confidence 45666777778899999998875432 12111100 112333477779999999999999886543
Q ss_pred HccCCCCHHHHHHHHHHHHHH----hCCCCCCceeHHHHHHHHhhC
Q psy1820 104 LTRSELSVQELTQVSEKVIEE----ADVDGDGKLSFMEFEHVILRA 145 (149)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~----~d~~~~g~I~~~eF~~~l~~~ 145 (149)
. ++.- +++++|.. .-...+|.++|++|+.++...
T Consensus 307 t----lt~~----ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 307 T----LTER----IVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred c----hhhH----HHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 3 3322 34468872 333457899999999988753
No 99
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.33 E-value=0.048 Score=32.45 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=42.1
Q ss_pred HHHHHHhhHhcCCCCCcccHHHHHHHHHHH------ccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCCC
Q psy1820 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLL------TRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPDS 148 (149)
Q Consensus 75 ~~l~~~f~~~D~~~~g~I~~~el~~~l~~~------~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 148 (149)
++++-+|+.+ .|++|.++...|..+|..+ .|...+---++..+..+|... ..+..|+-++|+.+|...|-+
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq~ 79 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQS 79 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--TT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCCe
Confidence 5788889999 6789999999999887653 111111111334444588875 345679999999999998753
No 100
>KOG4578|consensus
Probab=96.08 E-value=0.0054 Score=44.66 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=52.5
Q ss_pred HHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCC
Q psy1820 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPD 147 (149)
Q Consensus 76 ~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 147 (149)
-+...|..+|.|+++.|...|.+-+=..+. .....+..+..+++..|.|+|..|+++|+...|...++
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~----k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLL----KKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHH----hhccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 567799999999999999998665443331 12233445557999999999999999999999887654
No 101
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.98 E-value=0.0042 Score=38.69 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=39.0
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHH
Q psy1820 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEI 99 (149)
Q Consensus 41 ~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~ 99 (149)
.-.+..+|.|++|.++-.|+..+...+. +.+..+...|+..|.|++|.|+..|...
T Consensus 57 ~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 57 HWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3457777889999999999998766442 2333678899999999999999999764
No 102
>KOG2243|consensus
Probab=95.74 E-value=0.021 Score=49.10 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=49.8
Q ss_pred HhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 80 ~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
.|+.||+++.|.|+..+|..++... .+.+..+++- ++.....|.+..++|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~--k~ytqse~df----llscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH--KHYTQSEIDF----LLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc--ccchhHHHHH----HHHhhccCccccccHHHHHHHhc
Confidence 5777899999999999999999864 5788888874 88888999999999999987654
No 103
>KOG0169|consensus
Probab=95.66 E-value=0.26 Score=39.97 Aligned_cols=98 Identities=18% Similarity=0.339 Sum_probs=69.1
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHcc-CCCCHHHHHHHHHH
Q psy1820 42 RICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTR-SELSVQELTQVSEK 120 (149)
Q Consensus 42 ~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~-~~~~~~~~~~~~~~ 120 (149)
.+++-.+...++.+...+|..+.......+ .+...|..+-.+ .++++..+|..++....+ .+.+.+.+++++..
T Consensus 176 ~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp----ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~ 250 (746)
T KOG0169|consen 176 RLFKESDNSQTGKLEEEEFVKFRKELTKRP----EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIER 250 (746)
T ss_pred HHHHHHHhhccceehHHHHHHHHHhhccCc----hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 344444556788999999998887766332 667777777665 899999999999987743 36777777764443
Q ss_pred HHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 121 VIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 121 ~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
+-..-.....+.++.+.|.++|..
T Consensus 251 ~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 251 YEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred hhhhhhccccceecHHHHHHHhcC
Confidence 333333345677999999999875
No 104
>KOG1955|consensus
Probab=95.31 E-value=0.044 Score=42.30 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=56.3
Q ss_pred CChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 71 ASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 71 ~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
.+.++....-|+-+-.|-.|.|+-.--+.++... .++-.|+.. |+...|.++||.++..||+..+.
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS---klpi~ELsh----IWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS---KLPIEELSH----IWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhhc---cCchHHHHH----HHhhcccCccccccHHHHHhhHh
Confidence 3445678889999999999999998888888754 678888885 99999999999999999998774
No 105
>KOG4347|consensus
Probab=94.72 E-value=0.055 Score=42.90 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=51.5
Q ss_pred CchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHH
Q psy1820 37 NPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDL 97 (149)
Q Consensus 37 ~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el 97 (149)
.....+++.++|.+.+|.++|.+++..+..++ ...--+++...|+++|.+++ ..+.++.
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 44567899999999999999999999999988 44455589999999999999 9888887
No 106
>KOG4347|consensus
Probab=94.52 E-value=0.068 Score=42.42 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=50.0
Q ss_pred eeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCcee
Q psy1820 55 LNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134 (149)
Q Consensus 55 I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~ 134 (149)
|+|..|..+...+.+-......+...|+.+|.+++|.|++.++...|..+....+.+ .+. .+++..+.+.+ ..+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~e-k~~----l~y~lh~~p~~-~~d 608 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALE-KLK----LLYKLHDPPAD-ELD 608 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHH-HHH----HHHhhccCCcc-ccc
Confidence 334444444433332223345678899999999999999999999998873322332 233 37888888776 555
Q ss_pred HHH
Q psy1820 135 FME 137 (149)
Q Consensus 135 ~~e 137 (149)
.++
T Consensus 609 ~e~ 611 (671)
T KOG4347|consen 609 REE 611 (671)
T ss_pred ccc
Confidence 544
No 107
>KOG4578|consensus
Probab=94.01 E-value=0.054 Score=39.66 Aligned_cols=62 Identities=11% Similarity=0.175 Sum_probs=52.6
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 43 ICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 43 i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
.+..+|+|.++.|+-.|+..+-..+......+.-.+..|+..|.|++-.|++.|+...|...
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 35566779999999999988877777666677788999999999999999999999988764
No 108
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.98 E-value=0.59 Score=30.73 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=43.1
Q ss_pred HHhhHh---cCCCCCcccHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 79 YAFKIY---DFDNDQYIGMSDLEIGIRLLT--RSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 79 ~~f~~~---D~~~~g~I~~~el~~~l~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
.+|..| ...+...++-..|..+++..+ +..++..+++- +|..+-..+...|+|++|..+|.
T Consensus 3 ~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDi----iF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 3 AVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDI----IFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHH----HHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHH----HHHHhhcCCCcccCHHHHHHHHH
Confidence 344444 466778899999999998751 33578777775 88887666667799999998875
No 109
>KOG0169|consensus
Probab=93.55 E-value=0.95 Score=36.92 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=66.0
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSE 119 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~ 119 (149)
+..++...|++.+|.+++.+-..++..+. ..-....++..|+..+..+++.+...++..+.... ..+. ++..
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~-~~rp---ev~~--- 209 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL-TKRP---EVYF--- 209 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh-ccCc---hHHH---
Confidence 45677777889999999999998887665 33334588889999999999999999999988776 2222 4443
Q ss_pred HHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 120 KVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 120 ~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
+|.....+ .+.++.+++..++.
T Consensus 210 -~f~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 210 -LFVQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred -HHHHHhCC-CCccCHHHHHHHHH
Confidence 44443333 55566666655554
No 110
>KOG1265|consensus
Probab=93.43 E-value=3.1 Score=34.96 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=64.2
Q ss_pred eeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH---------ccCCCCHHHHHHHHHHHHHHh
Q psy1820 55 LNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL---------TRSELSVQELTQVSEKVIEEA 125 (149)
Q Consensus 55 I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~ 125 (149)
.+++.|..++..+|++ ..+..+|+.+..++.-++|.++|..+|..- .-....+..+.. ++..+
T Consensus 205 f~~e~f~~~l~klcpR----~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~----lieky 276 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLCPR----PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQS----LIEKY 276 (1189)
T ss_pred ccHHHHHHHHHhcCCc----hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHH----HHHHc
Confidence 5667777777777743 377789999999999999999999998653 134666667766 77776
Q ss_pred CCCC----CCceeHHHHHHHHhhC
Q psy1820 126 DVDG----DGKLSFMEFEHVILRA 145 (149)
Q Consensus 126 d~~~----~g~I~~~eF~~~l~~~ 145 (149)
..+. .|.|+-+.|++++...
T Consensus 277 Ep~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 277 EPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred CCchhhhhccccchhhhHHHhhCC
Confidence 6664 6899999999999874
No 111
>KOG0042|consensus
Probab=93.41 E-value=0.23 Score=39.16 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=56.9
Q ss_pred HHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 76 ~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
....-|..+|.++.|+++...+.++|+.. +.+.+++.+.+ +++..+.+-+|.+...||.++++.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~-~~~~d~~~~~~----~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSE-NVGWDEDRLHE----ELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHh-cCCCCHHHHHH----HHHHHHHhhcceeeHHHHHHHHHH
Confidence 45678999999999999999999999998 67899998887 888888888999999999998874
No 112
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.29 E-value=0.64 Score=31.07 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCC
Q psy1820 108 ELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAP 146 (149)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 146 (149)
+..++.+++ +|+..+..+.+.+|+.|..+++..+.
T Consensus 92 rFvp~kFe~----iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 92 RFVPQKFEE----IFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred cCCHHHHHH----HHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 556666675 99999988889999999999998643
No 113
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=93.08 E-value=0.39 Score=27.82 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=46.1
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhhccC-CChHHHHHHHhhHhcCC----CCCcccHHHHHHHHHHH
Q psy1820 42 RICQVFSEDGQGNLNFEEFLELLSVFSEQ-ASRDIKVFYAFKIYDFD----NDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 42 ~i~~~~~~~~~g~I~~~ef~~~~~~~~~~-~~~~~~l~~~f~~~D~~----~~g~I~~~el~~~l~~~ 104 (149)
.|+.-+.. +.+.++.++|..++...++. ......+..+++.|.++ ..+.++.++|...|..-
T Consensus 4 ~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 4 EIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 45555543 67899999999999877744 23466788888888654 47999999999988643
No 114
>KOG4065|consensus
Probab=93.03 E-value=0.73 Score=28.72 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=41.5
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhhcc---------CCChHHHHH----HHhhHhcCCCCCcccHHHHHHH
Q psy1820 42 RICQVFSEDGQGNLNFEEFLELLSVFSE---------QASRDIKVF----YAFKIYDFDNDQYIGMSDLEIG 100 (149)
Q Consensus 42 ~i~~~~~~~~~g~I~~~ef~~~~~~~~~---------~~~~~~~l~----~~f~~~D~~~~g~I~~~el~~~ 100 (149)
..+.+.|-++++.++=-|.+..+...-. ....+.++. .+.+--|.|++|+|+..||...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4677778899999998899888865432 122233333 3455568899999999998754
No 115
>KOG3866|consensus
Probab=92.93 E-value=0.27 Score=35.93 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=47.2
Q ss_pred HHhhHhcCCCCCcccHHHHHHHHHH----HccCCCCHHHHHH-------HHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 79 YAFKIYDFDNDQYIGMSDLEIGIRL----LTRSELSVQELTQ-------VSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 79 ~~f~~~D~~~~g~I~~~el~~~l~~----~~~~~~~~~~~~~-------~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
..|.+.|.|++|.++-.|+..++.. +......+++..+ .-+.+|+..|+|.+..|+.+||++.-.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 3566778999999999999887643 2233334444333 344588899999999999999987654
No 116
>KOG4286|consensus
Probab=92.68 E-value=0.95 Score=37.03 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=71.6
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH-------------ccCC
Q psy1820 42 RICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL-------------TRSE 108 (149)
Q Consensus 42 ~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~-------------~~~~ 108 (149)
=+..++|...+|.|..-+|...+..+| +...+++++-+|+....++.-.+ ...|..+|..+ +|.+
T Consensus 474 ~llNvyD~~R~g~irvls~ki~~i~lc-k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsN 551 (966)
T KOG4286|consen 474 WLLNVYDTGRTGRIRVLSFKIGIISLC-KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSN 551 (966)
T ss_pred HHHHhcccCCCcceEEeeehhhHHHHh-cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCC
Confidence 467788989999999999999999999 66667789999999977665444 55555554332 4445
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCCC
Q psy1820 109 LSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPDS 148 (149)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 148 (149)
+++..- .+|+. .++--.|++..|+..+...|-|
T Consensus 552 vepsvr-----sCF~~--v~~~pei~~~~f~dw~~~epqs 584 (966)
T KOG4286|consen 552 IEPSVR-----SCFQF--VNNKPEIEAALFLDWMRLEPQS 584 (966)
T ss_pred CChHHH-----HHHHh--cCCCCcchHHHHHHHhccCcch
Confidence 555433 37873 3455679999999999888754
No 117
>KOG0039|consensus
Probab=92.61 E-value=0.47 Score=38.47 Aligned_cols=87 Identities=23% Similarity=0.336 Sum_probs=65.4
Q ss_pred CCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHc---cCCCCHHHHHHHHHHHHHHhCCC
Q psy1820 52 QGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLT---RSELSVQELTQVSEKVIEEADVD 128 (149)
Q Consensus 52 ~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~---~~~~~~~~~~~~~~~~~~~~d~~ 128 (149)
++ |+++||. .. ..+.+..++..|.++|. ++|.++.+++..++.... ......+...++...++...|.+
T Consensus 2 ~~-~~~~~~~-----~~-~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK-----IT-DCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc-----cc-CCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 46 8899998 22 55667799999999999 899999999999876541 12223334445566789999999
Q ss_pred CCCceeHHHHHHHHhhCC
Q psy1820 129 GDGKLSFMEFEHVILRAP 146 (149)
Q Consensus 129 ~~g~I~~~eF~~~l~~~~ 146 (149)
..|.+.++++..++...|
T Consensus 74 ~~~y~~~~~~~~ll~~~~ 91 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIP 91 (646)
T ss_pred ccceeeecchhHHHHhch
Confidence 989999988887777654
No 118
>KOG3555|consensus
Probab=92.47 E-value=0.27 Score=36.41 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=51.9
Q ss_pred ChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhC
Q psy1820 72 SRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRA 145 (149)
Q Consensus 72 ~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 145 (149)
..+..+-.+|..+|.|.+|.++..||..+-.. -.+.-++ .+|...|...+|.|+-.|++..+.+.
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-----knE~Cik----pFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIELD-----KNEACIK----PFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhcc-----CchhHHH----HHHhhhcccccCccccchhhhhhccC
Confidence 45668899999999999999999999876432 2233344 48999999999999999998887653
No 119
>KOG0035|consensus
Probab=92.18 E-value=0.67 Score=38.57 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=56.1
Q ss_pred HHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhC
Q psy1820 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSV-QELTQVSEKVIEEADVDGDGKLSFMEFEHVILRA 145 (149)
Q Consensus 75 ~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 145 (149)
.+++..|+.++....|..+.+++..++..+ |..... +...+-+.+++...|.+.-|.+++.+|.+.|.+.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl-g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSL-GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhc-CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 478999999999999999999999999998 666554 3444444456666666667899999999998763
No 120
>KOG1707|consensus
Probab=91.45 E-value=1.6 Score=34.75 Aligned_cols=30 Identities=37% Similarity=0.449 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHhhCCC
Q psy1820 118 SEKVIEEADVDGDGKLSFMEFEHVILRAPD 147 (149)
Q Consensus 118 ~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 147 (149)
...+|..+|.|+||.++=+|+...+...|.
T Consensus 317 l~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 317 LVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred HHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 445777888888888888888888877664
No 121
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=89.45 E-value=0.52 Score=26.60 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=37.5
Q ss_pred HHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCC---CCCceeHHHHHHHH
Q psy1820 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVD---GDGKLSFMEFEHVI 142 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~g~I~~~eF~~~l 142 (149)
.+.+..+|+.+ .++.++||.++|++.|.. ++++-++..|-...+.+ ..|.++|..|+..|
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p--------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTP--------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-C--------CCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCc--------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 45889999999 778899999999987642 22332111122222222 24789999997643
No 122
>KOG0035|consensus
Probab=88.36 E-value=2.6 Score=35.28 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=61.3
Q ss_pred ccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcC---CCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcc
Q psy1820 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYI 92 (149)
Q Consensus 16 ~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I 92 (149)
..+..++...+..+|.-........++++.++.. +..|++++.+|...+.+..........+..+|+.+-+.+. +|
T Consensus 763 aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~l 841 (890)
T KOG0035|consen 763 AASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-YL 841 (890)
T ss_pred cCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HH
Confidence 4567788888877774322222334566666654 4569999999999999877677778889999999988766 78
Q ss_pred cHHHHHH
Q psy1820 93 GMSDLEI 99 (149)
Q Consensus 93 ~~~el~~ 99 (149)
..+||..
T Consensus 842 L~eEL~~ 848 (890)
T KOG0035|consen 842 LLEELVR 848 (890)
T ss_pred HHHHHHh
Confidence 8888876
No 123
>KOG0046|consensus
Probab=87.84 E-value=5.5 Score=31.52 Aligned_cols=55 Identities=11% Similarity=-0.009 Sum_probs=41.8
Q ss_pred CCCCceeHHHHHHHHHhhcc--CCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 50 DGQGNLNFEEFLELLSVFSE--QASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 50 ~~~g~I~~~ef~~~~~~~~~--~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
+++|.|+..+....+..... +...++.+..+....+.+.+|.|++++|..++..+
T Consensus 30 ~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 30 DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 78889999998888876542 22335678888888888999999999988866544
No 124
>PLN02230 phosphoinositide phospholipase C 4
Probab=87.16 E-value=6.1 Score=31.90 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=51.1
Q ss_pred ChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccC--CCCHHHHHHHHHHHHHHhC---CCCCCceeHHHHHHHHhh
Q psy1820 72 SRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS--ELSVQELTQVSEKVIEEAD---VDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 72 ~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~--~~~~~~~~~~~~~~~~~~d---~~~~g~I~~~eF~~~l~~ 144 (149)
..+..+..+|..|-.++ +.++.++|..+|....+. ..+.+++..++..+..... .-..+.++.+.|..+|..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 34568999999996544 899999999999887432 3466777765554443322 223456999999999876
No 125
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=86.75 E-value=1.4 Score=28.43 Aligned_cols=50 Identities=10% Similarity=0.130 Sum_probs=30.1
Q ss_pred hHHHHHHhhcC-------CCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCC
Q psy1820 39 FGQRICQVFSE-------DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDN 88 (149)
Q Consensus 39 ~~~~i~~~~~~-------~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~ 88 (149)
..+.+...+.. +..+.|+|+.|..+|.......-..+....+|..|-...
T Consensus 26 klkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 26 KLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred HHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 44455555532 455799999999999887655666678888999986644
No 126
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=85.87 E-value=6.5 Score=26.41 Aligned_cols=66 Identities=15% Similarity=0.007 Sum_probs=43.9
Q ss_pred HHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccC----CCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy1820 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS----ELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~----~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 142 (149)
+++...+|.++++.+.+.+|..|+...+..-... ......++-. +.-.+-.+++|.++.|+-..+.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~---~~y~L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWG---ALYILAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHH---HHHHHHcCcCCcEeHHHHhhhc
Confidence 5688999999999999999999999998763100 1112222221 2222346778999998876543
No 127
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=85.82 E-value=5 Score=26.21 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCCC
Q psy1820 108 ELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPDS 148 (149)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 148 (149)
.++.+++..++..++..+..++ ++=|+|-.+.++.|.|
T Consensus 127 ~MSk~Qik~L~~~Ii~~akae~---~dtE~Ye~vwkKmPaY 164 (175)
T PF04876_consen 127 RMSKDQIKTLCEQIIEMAKAES---SDTEHYEKVWKKMPAY 164 (175)
T ss_pred hhhHHHHHHHHHHHHHHHhccC---CchHHHHHHHHHhhHH
Confidence 4556666665555666555443 2336666666666543
No 128
>PLN02222 phosphoinositide phospholipase C 2
Probab=82.84 E-value=9.4 Score=30.79 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=47.2
Q ss_pred HHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHhCC-CCCCceeHHHHHHHHhhC
Q psy1820 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS-ELSVQELTQVSEKVIEEADV-DGDGKLSFMEFEHVILRA 145 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~-~~~g~I~~~eF~~~l~~~ 145 (149)
...+..+|..+.. ++.++.++|..+|....+. ..+.+.+.. ++..+.. ...+.++.+.|..+|...
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~----ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQS----IINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHH----HHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 4488889999864 4799999999999887554 346666665 4443321 235679999999999763
No 129
>PLN02228 Phosphoinositide phospholipase C
Probab=82.77 E-value=12 Score=30.17 Aligned_cols=69 Identities=7% Similarity=0.152 Sum_probs=48.3
Q ss_pred CChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCC-CCHHHHHHHHHHHHHHhCCC----CCCceeHHHHHHHHhhC
Q psy1820 71 ASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSE-LSVQELTQVSEKVIEEADVD----GDGKLSFMEFEHVILRA 145 (149)
Q Consensus 71 ~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~----~~g~I~~~eF~~~l~~~ 145 (149)
...+.++..+|..+-.+ +.++.++|..+|....+.. .+.+.+.+ ++..+... ..|.++.+.|..+|...
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQD----IFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHH----HHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 33456888899888643 5899999999998875543 34445554 56555432 34679999999999764
No 130
>PLN02223 phosphoinositide phospholipase C
Probab=82.45 E-value=12 Score=29.94 Aligned_cols=73 Identities=5% Similarity=-0.091 Sum_probs=53.7
Q ss_pred ChHHHHHHHhhHhcCCCCCcccHHHHHHHH---HHHcc-CCCCHHHHHHHHHHHHHHhC----CCCCCceeHHHHHHHHh
Q psy1820 72 SRDIKVFYAFKIYDFDNDQYIGMSDLEIGI---RLLTR-SELSVQELTQVSEKVIEEAD----VDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 72 ~~~~~l~~~f~~~D~~~~g~I~~~el~~~l---~~~~~-~~~~~~~~~~~~~~~~~~~d----~~~~g~I~~~eF~~~l~ 143 (149)
...+.+..+|..+- +++|.++.+.+..++ ....| ...+.++++.+++.++.... ....+.++.+.|.++|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 34568899999994 678999999999988 54433 36778888887777665432 12236799999999997
Q ss_pred hC
Q psy1820 144 RA 145 (149)
Q Consensus 144 ~~ 145 (149)
..
T Consensus 92 s~ 93 (537)
T PLN02223 92 ST 93 (537)
T ss_pred Cc
Confidence 63
No 131
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=82.39 E-value=4.6 Score=22.81 Aligned_cols=48 Identities=13% Similarity=0.096 Sum_probs=31.5
Q ss_pred CCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 89 DQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 89 ~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
+-.+++.-|..++... ++...... +...++.-..+.|+.+||++.+..
T Consensus 6 sp~~~F~~L~~~l~~~----l~~~~~~~----l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH----LPPSKMDL----LQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred CCcccHHHHHHHHHHH----CCHHHHHH----HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4456666666666554 67777664 444444445678999999988764
No 132
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=77.88 E-value=2.7 Score=26.21 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhC
Q psy1820 109 LSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRA 145 (149)
Q Consensus 109 ~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 145 (149)
+++++++. +...+-.|..|.|.|.||+.-+..+
T Consensus 4 LtDeQFdr----LW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDR----LWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHH----HHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhh----hhhhCcCCccCCEeHHHHHHHcccc
Confidence 56777774 8888889999999999999887743
No 133
>KOG1955|consensus
Probab=77.87 E-value=5.6 Score=31.31 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=27.2
Q ss_pred HHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
-.+|..+|++.|.+++|.+++.||..++.-+
T Consensus 264 i~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 264 IEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred hHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 3478899999999999999999999987644
No 134
>KOG1029|consensus
Probab=74.53 E-value=18 Score=30.34 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=41.2
Q ss_pred HhhHhc--CCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 80 AFKIYD--FDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 80 ~f~~~D--~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
-+..|+ +.+.|+|+-..-+.++... +++..-+.+ |++..|.|+||+++-.||.=.|+
T Consensus 18 ~~~qF~~Lkp~~gfitg~qArnfflqS---~LP~~VLaq----IWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 18 HDAQFGQLKPGQGFITGDQARNFFLQS---GLPTPVLAQ----IWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHHHHhccCCCCCccchHhhhhhHHhc---CCChHHHHH----HHHhhhcCccccchHHHHHHHHH
Confidence 344444 3578888888888887665 466666666 88888889999999888855443
No 135
>KOG3555|consensus
Probab=73.72 E-value=8.3 Score=28.92 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=52.8
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELT 115 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~ 115 (149)
..=|+..+|-|.++.++..|+..+.. ...+.-++-.|...|...+|.|+-.|-...+... . +.-..++.
T Consensus 252 ~gWMFnklD~N~Dl~Ld~sEl~~I~l-----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~-~-~pc~~e~~ 320 (434)
T KOG3555|consen 252 LGWMFNKLDTNYDLLLDQSELRAIEL-----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS-D-PPCQAELC 320 (434)
T ss_pred hhhhhhccccccccccCHHHhhhhhc-----cCchhHHHHHHhhhcccccCccccchhhhhhccC-C-CccccHHH
Confidence 34467777779999999999987763 3335578889999999999999999999888765 3 34444444
No 136
>PLN02952 phosphoinositide phospholipase C
Probab=71.73 E-value=17 Score=29.48 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=40.2
Q ss_pred CCCcccHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCC
Q psy1820 88 NDQYIGMSDLEIGIRLLTR-SELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAP 146 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 146 (149)
+.|.++.+++..+.+.+.. ...+..++.. +|..+..++ +.++.++|..+|...+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~----lf~~~~~~~-~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKD----VFCKFSVGG-GHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHH----HHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 4689999999888877621 1236778886 888875443 6899999999998643
No 137
>KOG2871|consensus
Probab=71.43 E-value=4.1 Score=30.77 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=42.6
Q ss_pred hHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHH
Q psy1820 73 RDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEH 140 (149)
Q Consensus 73 ~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 140 (149)
..+.++.+|+.+|+.++|+|+-.-++.++... +..+++...-. -+=+..|...-|.|-.++|..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~-N~~vse~a~v~---l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL-NRLVSEPAYVM---LMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHh-cccccCHHHHH---HhcCccChhhcceEEeccccc
Confidence 35689999999999999999999999999888 54444433221 122224444455555555543
No 138
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=69.64 E-value=9 Score=27.46 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=36.5
Q ss_pred CCcccHHHHHHHHHH----HccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHH
Q psy1820 89 DQYIGMSDLEIGIRL----LTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHV 141 (149)
Q Consensus 89 ~g~I~~~el~~~l~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 141 (149)
--.+++.+|.++|.. ..|.+++++.+.-+.++++..-....+..|++..|++-
T Consensus 176 p~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~Ke 232 (254)
T PF02864_consen 176 PPKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCKE 232 (254)
T ss_dssp -SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHTS
T ss_pred CCcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhhc
Confidence 456889999998753 35889999999988888887655556789999999764
No 139
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=68.17 E-value=9.5 Score=21.54 Aligned_cols=51 Identities=16% Similarity=0.095 Sum_probs=35.4
Q ss_pred CCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHcc
Q psy1820 52 QGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTR 106 (149)
Q Consensus 52 ~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~ 106 (149)
+-.+.|..++..+.... . ......+...|+.=+.+.|+.+||.+.++.+.|
T Consensus 6 sp~~~F~~L~~~l~~~l-~---~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHL-P---PSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHHHHC-C---HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 44677777777776554 2 224445555565557899999999999988754
No 140
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=66.62 E-value=20 Score=22.07 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=12.8
Q ss_pred hHhcCCCCCcccHHHHHHHHH
Q psy1820 82 KIYDFDNDQYIGMSDLEIGIR 102 (149)
Q Consensus 82 ~~~D~~~~g~I~~~el~~~l~ 102 (149)
++||+..+-+||.+++.+++.
T Consensus 10 RLYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred cccCCCccceeeHHHHHHHHH
Confidence 455666666666666666554
No 141
>KOG1707|consensus
Probab=66.04 E-value=9.7 Score=30.63 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=41.4
Q ss_pred HHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy1820 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142 (149)
Q Consensus 75 ~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 142 (149)
+.+...|..||.+++|.++-.|+..+.....+.+.....-.. .--.+..|.++++.|+...
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~-------~t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKD-------STVKNERGWLTLNGFLSQW 375 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccc-------cceecccceeehhhHHHHH
Confidence 467889999999999999999999999887433322110000 0112256888888886543
No 142
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=64.26 E-value=5.9 Score=21.92 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=19.9
Q ss_pred hHhcCCCCCcccHHHHHHHHHH
Q psy1820 82 KIYDFDNDQYIGMSDLEIGIRL 103 (149)
Q Consensus 82 ~~~D~~~~g~I~~~el~~~l~~ 103 (149)
++||...+.+|+.+++.+++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 6789999999999999999864
No 143
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=63.75 E-value=37 Score=21.96 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=35.1
Q ss_pred CceeHHHHHHHHHhhccCCChHHHHHHHhhHhc-------CCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHh
Q psy1820 53 GNLNFEEFLELLSVFSEQASRDIKVFYAFKIYD-------FDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEA 125 (149)
Q Consensus 53 g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D-------~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (149)
+.++..||.++-....-. ..++..+.+.|. -+..+.|+.+.|+.+|+......++++-.. .+|..+
T Consensus 6 ~~lsp~eF~qLq~y~eys---~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~----hLF~sF 78 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYS---TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQ----HLFLSF 78 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHH----HHHHHS
T ss_pred eccCHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHH----HHHHHH
Confidence 567888888765433211 114444444442 234568999999999998855565544444 467665
Q ss_pred CCC
Q psy1820 126 DVD 128 (149)
Q Consensus 126 d~~ 128 (149)
-..
T Consensus 79 ~~~ 81 (138)
T PF14513_consen 79 QKK 81 (138)
T ss_dssp ---
T ss_pred hCc
Confidence 443
No 144
>KOG3442|consensus
Probab=61.91 E-value=22 Score=22.53 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=33.7
Q ss_pred CCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCc
Q psy1820 88 NDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGK 132 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~ 132 (149)
..|.||.+|-.++|..- .+++.++++.--+.+|..=|+...|.
T Consensus 52 ~~~~iTlqEa~qILnV~--~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 52 SNGKITLQEAQQILNVK--EPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccccccHHHHhhHhCCC--CCCCHHHHHHHHHHHHhccCcccCcc
Confidence 34779999999999764 58899999887778888777766564
No 145
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=61.90 E-value=20 Score=18.14 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=22.0
Q ss_pred HHHHHhhHhcC--CCCCcccHHHHHHHHHH
Q psy1820 76 KVFYAFKIYDF--DNDQYIGMSDLEIGIRL 103 (149)
Q Consensus 76 ~l~~~f~~~D~--~~~g~I~~~el~~~l~~ 103 (149)
.+..+|..|.. .....++..||+.++..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 56778888863 35778999999999875
No 146
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=61.47 E-value=12 Score=23.76 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=35.8
Q ss_pred CCceeHHHHHHHHHhhc-------cCCC----------hHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 52 QGNLNFEEFLELLSVFS-------EQAS----------RDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 52 ~g~I~~~ef~~~~~~~~-------~~~~----------~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
+..++..+...++..+. +... .+-.+.+++..||++++|.|+.-.++.++..+
T Consensus 57 d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 57 DSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 56799999888876543 1111 12246789999999999999999999887543
No 147
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=61.25 E-value=37 Score=22.25 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=28.7
Q ss_pred ccCHHHHHHHHHhhcccCCCCCc-hHHHHHHhhcCCCCCceeHHHHHHHHHhhc
Q psy1820 16 LITIAELRTMYLWKGLFSTQENP-FGQRICQVFSEDGQGNLNFEEFLELLSVFS 68 (149)
Q Consensus 16 ~~~~~el~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~ 68 (149)
.++...|.++++--++....... ..+-++..+...+...|+|++|+.++..+.
T Consensus 18 ~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 18 EMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp EEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 45566777777766665432222 223344444434455688888888876554
No 148
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=58.72 E-value=39 Score=20.54 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=11.4
Q ss_pred HHHHHHhhcC-CCCCceeHHHHHHHH
Q psy1820 40 GQRICQVFSE-DGQGNLNFEEFLELL 64 (149)
Q Consensus 40 ~~~i~~~~~~-~~~g~I~~~ef~~~~ 64 (149)
+..+..-+++ -.+|.+....|-.++
T Consensus 29 W~~VE~RFd~La~dG~L~rs~Fg~CI 54 (100)
T PF08414_consen 29 WKEVEKRFDKLAKDGLLPRSDFGECI 54 (100)
T ss_dssp HHHHHHHHHHH-BTTBEEGGGHHHHH
T ss_pred HHHHHHHHHHhCcCCcccHHHHHHhc
Confidence 4444444443 225555555555444
No 149
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=58.60 E-value=67 Score=23.21 Aligned_cols=104 Identities=10% Similarity=0.006 Sum_probs=58.2
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHH----HHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHH
Q psy1820 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKV----FYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 41 ~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l----~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~ 116 (149)
.....++........++.+|+.-+...+.. ..+.+ ...|++-= -+|.++..|-.-+.......+++..+...
T Consensus 95 ~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~--r~~l~~~lL~~l~~vA~--ADG~l~~~E~~~L~~Ia~~Lgis~~df~~ 170 (267)
T PRK09430 95 RAAQQAFREGKEPDFPLREKLRQFRSVCGG--RFDLLRMFLEIQIQAAF--ADGSLHPNERQVLYVIAEELGFSRFQFDQ 170 (267)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 346667766555568899999888766522 22222 33444433 35788888865555544345788887776
Q ss_pred HHHHHHHH--hCCCC--------CCceeHHHHHHHHhhCCCC
Q psy1820 117 VSEKVIEE--ADVDG--------DGKLSFMEFEHVILRAPDS 148 (149)
Q Consensus 117 ~~~~~~~~--~d~~~--------~g~I~~~eF~~~l~~~~~~ 148 (149)
+...+-.. +.... +...+..++..+|--.|+.
T Consensus 171 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~a 212 (267)
T PRK09430 171 LLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESD 212 (267)
T ss_pred HHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCC
Confidence 33322211 21110 1135667777777655543
No 150
>KOG0998|consensus
Probab=57.49 E-value=5 Score=33.83 Aligned_cols=63 Identities=29% Similarity=0.177 Sum_probs=52.1
Q ss_pred HHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
...+..+|...|.+.+|.|+..+....+.. .+++...+.. ++...|..+.|.|++.+|+-.+.
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~---~gl~~~~l~~----~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLP---FGLSKPRLAH----VWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHHhccccCCCccccccccccccc---CCCChhhhhh----hhhhcchhccCcccccccchhhh
Confidence 345677899999999999999999988875 4577777775 88889999999999999866554
No 151
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=57.11 E-value=48 Score=21.04 Aligned_cols=90 Identities=17% Similarity=0.270 Sum_probs=53.5
Q ss_pred CceeHHHHHHHHHhh--cc----CCChHHHHHHHhhHhcCCC--CCcccHHHHHHHHHHHc-----c-CCCC-------H
Q psy1820 53 GNLNFEEFLELLSVF--SE----QASRDIKVFYAFKIYDFDN--DQYIGMSDLEIGIRLLT-----R-SELS-------V 111 (149)
Q Consensus 53 g~I~~~ef~~~~~~~--~~----~~~~~~~l~~~f~~~D~~~--~g~I~~~el~~~l~~~~-----~-~~~~-------~ 111 (149)
..|-|..|..+++.. ++ ..-.-..+..+|+...-+. +..|+..++..++..+- . .... +
T Consensus 13 n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~ 92 (127)
T PF09068_consen 13 NNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVD 92 (127)
T ss_dssp TT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----
T ss_pred hhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHH
Confidence 356778887776531 11 1222335677888877653 47799999999987651 1 1111 1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy1820 112 QELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142 (149)
Q Consensus 112 ~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 142 (149)
.-++-+...++..+|.++.|.|+--.|...+
T Consensus 93 ~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 93 LAVDLLLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHHHHHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 3344567889999999999999998886655
No 152
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=56.17 E-value=48 Score=20.81 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=48.8
Q ss_pred CCCCceeHHHHHHHHHhhccCCC-hHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCC
Q psy1820 50 DGQGNLNFEEFLELLSVFSEQAS-RDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVD 128 (149)
Q Consensus 50 ~~~g~I~~~ef~~~~~~~~~~~~-~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 128 (149)
-.||.|+.+|-..+...+..... .......+...++.-....++.. .++..+ ...++.++...+...++.....|
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~l-~~~~~~~~r~~ll~~l~~ia~AD 110 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLE---ELLREL-RDSLSPEEREDLLRMLIAIAYAD 110 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHH---HHHHHH-CTS--HHHHHHHHHHHHHHCTCT
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHH---HHHHHH-HHhhchHHHHHHHHHHHHHHhcC
Confidence 35789999998877665522211 12233334444443222234444 444555 45566777777777888888777
Q ss_pred CCCceeHHHHHHHHhh
Q psy1820 129 GDGKLSFMEFEHVILR 144 (149)
Q Consensus 129 ~~g~I~~~eF~~~l~~ 144 (149)
++-.-.-.+|+.-+..
T Consensus 111 G~~~~~E~~~l~~ia~ 126 (140)
T PF05099_consen 111 GEISPEEQEFLRRIAE 126 (140)
T ss_dssp TC-SCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6655566666665543
No 153
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=54.70 E-value=23 Score=20.46 Aligned_cols=43 Identities=14% Similarity=0.327 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCC-CCceeHHHHHHHH
Q psy1820 93 GMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDG-DGKLSFMEFEHVI 142 (149)
Q Consensus 93 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~g~I~~~eF~~~l 142 (149)
..+++...|. |.+.+.+.+.+ ++...+... -+.++-+||++++
T Consensus 43 ~i~~le~~L~---G~~~~~~~i~~----~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI---GCPYDREAIKE----ALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT---TCBSSHHHHHH----HHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH---hcCCCHHHHHH----HHHHhCHhhccccCCHHHHHHhC
Confidence 3566666663 88899999887 777765543 4679999998875
No 154
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=52.40 E-value=19 Score=16.89 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=10.7
Q ss_pred CCceeHHHHHHHHHhh
Q psy1820 52 QGNLNFEEFLELLSVF 67 (149)
Q Consensus 52 ~g~I~~~ef~~~~~~~ 67 (149)
.|.|++++++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4667777777776554
No 155
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=52.35 E-value=48 Score=24.81 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=27.7
Q ss_pred CCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy1820 88 NDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 142 (149)
.+|.||.+|-...++.. ....+++.++. +++..+ ||-+||.+++
T Consensus 299 R~G~itReeal~~v~~~-d~~~~~~~~~~----~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEY-DGEFPKEDLEY----FLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHh-cccccHHHHHH----HHHHhC------CCHHHHHHHh
Confidence 36777777777777665 33444455554 666554 6677777664
No 156
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=50.92 E-value=21 Score=15.03 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=8.0
Q ss_pred cCCCCCcccHHHHHH
Q psy1820 85 DFDNDQYIGMSDLEI 99 (149)
Q Consensus 85 D~~~~g~I~~~el~~ 99 (149)
|.|++|.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 445666666655543
No 157
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=50.29 E-value=53 Score=19.49 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=43.2
Q ss_pred CCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCC
Q psy1820 51 GQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGD 130 (149)
Q Consensus 51 ~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 130 (149)
.||.|+-.|-..+-..+............+...+........+..++...+... ...+++....++..++...-.|
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~r~~~l~~l~~vA~AD-- 87 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRA--CGGRPELLLQLLEFLFQIAYAD-- 87 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHc--
Confidence 467788887776655544322222233334444433223235566666666543 2356666666666666665554
Q ss_pred CceeHHH
Q psy1820 131 GKLSFME 137 (149)
Q Consensus 131 g~I~~~e 137 (149)
|.++-.|
T Consensus 88 G~~~~~E 94 (106)
T cd07316 88 GELSEAE 94 (106)
T ss_pred CCCCHHH
Confidence 4454443
No 158
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=49.27 E-value=19 Score=23.96 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=32.9
Q ss_pred hHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy1820 73 RDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEE 124 (149)
Q Consensus 73 ~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (149)
....+..|++.+-.++...++..+|...+.. |..+++++++..+..++..
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGV--GV~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACGV--GVVVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTTT--T----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcCC--CeEECHHHHHHHHHHHHHH
Confidence 3456788888887777778999999988764 7889999999876666653
No 159
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.65 E-value=32 Score=21.16 Aligned_cols=14 Identities=7% Similarity=-0.095 Sum_probs=8.3
Q ss_pred CCCcccHHHHHHHH
Q psy1820 88 NDQYIGMSDLEIGI 101 (149)
Q Consensus 88 ~~g~I~~~el~~~l 101 (149)
..|.|+.+|-...|
T Consensus 107 e~Gei~peeA~~~L 120 (122)
T COG3877 107 EKGEISPEEAIKML 120 (122)
T ss_pred HcCCCCHHHHHHHh
Confidence 45667766655544
No 160
>KOG4004|consensus
Probab=46.89 E-value=10 Score=26.22 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=38.2
Q ss_pred hhHhcC-CCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 81 FKIYDF-DNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 81 f~~~D~-~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
|-.+|. ..+|+++..||.-+-..+ ++.+ ..+..+|...|.|++|.|+.+|+...+.
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~----ipme---~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL----IPME---HCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccccccccccccCCc----ccHH---hhchhhhhcccCCCCCceeHHHhhcccC
Confidence 333454 568999998876543222 2322 2233589999999999999999977664
No 161
>KOG1954|consensus
Probab=46.82 E-value=34 Score=26.39 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHH
Q psy1820 88 NDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~ 139 (149)
-+|+|+-..-+.-|. +..++...+. .+++..|.|++|.++-+||.
T Consensus 456 ~~gk~sg~~ak~~mv---~sklpnsvlg----kiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 456 VNGKLSGRNAKKEMV---KSKLPNSVLG----KIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred cCceeccchhHHHHH---hccCchhHHH----hhhhhhcCCcccCcCHHHHH
Confidence 356666655555443 3356665555 49999999999999999994
No 162
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=46.43 E-value=35 Score=17.76 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=20.8
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCC
Q psy1820 95 SDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPD 147 (149)
Q Consensus 95 ~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 147 (149)
..|..++....|..++...-..+-..+-..+. ..|.=++.+|+..+...|+
T Consensus 6 ~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~--~~~~~~~~~y~~~L~~d~~ 56 (57)
T PF03705_consen 6 ERFRELIYRRTGIDLSEYKRSLLERRLARRMR--ALGLPSFAEYYELLRSDPD 56 (57)
T ss_dssp HHHHHHHHHHH-----GGGHHHHHHHHHHHHH--HHT---HHHHHHHHHH-T-
T ss_pred HHHHHHHHHHHCCCCchhhHHHHHHHHHHHHH--HcCCCCHHHHHHHHHhCCC
Confidence 34445554444665555543332222222222 1245688999999887764
No 163
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=45.99 E-value=66 Score=19.43 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=42.9
Q ss_pred eeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHH
Q psy1820 55 LNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQV 117 (149)
Q Consensus 55 I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~ 117 (149)
|.-.+|..++..+.... .++++..+-..+-..+...++..++..++..+++...++++++.+
T Consensus 20 vP~~Dy~PLlALL~r~L-td~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV 81 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRL-TDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERV 81 (96)
T ss_dssp B-HHHHHHHHHHHTTTS--HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHH
T ss_pred CCCCccHHHHHHhcccC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHH
Confidence 66778888888777554 444666666666556666668889999998887888888898863
No 164
>COG5562 Phage envelope protein [General function prediction only]
Probab=45.31 E-value=17 Score=23.38 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=16.6
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLS 65 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~ 65 (149)
...|...+.....|+.+|+||+..+.
T Consensus 74 ~~~i~~al~~~qsGqttF~ef~~~la 99 (137)
T COG5562 74 TTLIKTALRRHQSGQTTFEEFCSALA 99 (137)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 34455555556677777777777664
No 165
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=45.10 E-value=49 Score=22.40 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=20.9
Q ss_pred CCCCCcccHHHHHHHHHHHccCCCCHHHHHH
Q psy1820 86 FDNDQYIGMSDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 86 ~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~ 116 (149)
-+.+|++..++|...+..- +..++.+++.+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~-~~~~t~~~l~~ 57 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKA-YKWVTRELLEA 57 (179)
T ss_pred cCCCCCEEHHHHHHHHHHc-cCCCCHHHHHH
Confidence 3567888888888777654 45677777765
No 166
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=44.88 E-value=66 Score=19.06 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=43.9
Q ss_pred CCCceeHHHHHHHHHhhccC-CChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCC
Q psy1820 51 GQGNLNFEEFLELLSVFSEQ-ASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDG 129 (149)
Q Consensus 51 ~~g~I~~~ef~~~~~~~~~~-~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 129 (149)
.||.|+-.|-..+-..+... .........+...+........+..++...+... .+.+....++..++...-.|+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~r~~~l~~L~~vA~ADG 87 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH----FDYEERLELVEALWEVAYADG 87 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHhcC
Confidence 36788888877665543321 2223344445555544445556677777666543 356666666777777766554
Q ss_pred C
Q psy1820 130 D 130 (149)
Q Consensus 130 ~ 130 (149)
.
T Consensus 88 ~ 88 (104)
T cd07313 88 E 88 (104)
T ss_pred C
Confidence 3
No 167
>PLN02228 Phosphoinositide phospholipase C
Probab=44.10 E-value=1.3e+02 Score=24.55 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=42.6
Q ss_pred hHHHHHHhhcCCCCCceeHHHHHHHHHhhccCC-ChHHHHHHHhhHhcCC----CCCcccHHHHHHHHHH
Q psy1820 39 FGQRICQVFSEDGQGNLNFEEFLELLSVFSEQA-SRDIKVFYAFKIYDFD----NDQYIGMSDLEIGIRL 103 (149)
Q Consensus 39 ~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~-~~~~~l~~~f~~~D~~----~~g~I~~~el~~~l~~ 103 (149)
...+|+.-+.. ++.++.++|..++...++.. ...+.+..+++.|... ..|.++.+.|..+|..
T Consensus 25 ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 25 SIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 34444444432 35899999999998776432 3345677778877543 3578999999998853
No 168
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=43.91 E-value=1.1e+02 Score=21.31 Aligned_cols=55 Identities=15% Similarity=0.255 Sum_probs=37.9
Q ss_pred chHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCC-----------hHHHHHHHhhHhcCCCCCcccHH
Q psy1820 38 PFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQAS-----------RDIKVFYAFKIYDFDNDQYIGMS 95 (149)
Q Consensus 38 ~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~-----------~~~~l~~~f~~~D~~~~g~I~~~ 95 (149)
....+|.++.+. |.++|..++.-++.....+. -.+++...-+.||++..|.|-+.
T Consensus 164 K~L~eMK~Lad~---geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~I~ 229 (246)
T PF10897_consen 164 KNLGEMKRLADK---GELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIKIG 229 (246)
T ss_pred HHHHHHHHhhhc---CCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCceeee
Confidence 345567777764 78999999988887653211 12456777788899998887653
No 169
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=43.48 E-value=51 Score=19.39 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHh--CCCCCCceeHHHH
Q psy1820 93 GMSDLEIGIRLLTRSELSVQELTQVSEKVIEEA--DVDGDGKLSFMEF 138 (149)
Q Consensus 93 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~g~I~~~eF 138 (149)
+..||...+... ...++..++..+++.++..+ ....++.|...+|
T Consensus 2 ~k~eli~~i~~~-~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T TIGR00988 2 TKSELIERIATQ-QSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGF 48 (94)
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCc
Confidence 455666665543 23456666665444444432 1223344554444
No 170
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=41.95 E-value=57 Score=17.78 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=15.6
Q ss_pred cccHHHHHHHHHHHccCCCCHHHHHH
Q psy1820 91 YIGMSDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 91 ~I~~~el~~~l~~~~~~~~~~~~~~~ 116 (149)
.|+.++|..+|... ..-++.++++.
T Consensus 29 ~it~~DF~~Al~~~-kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKV-KPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTC-GGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHc-CCCCCHHHHHH
Confidence 46667777777666 56666666664
No 171
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=40.97 E-value=66 Score=17.99 Aligned_cols=21 Identities=29% Similarity=0.194 Sum_probs=13.8
Q ss_pred HHHHHHHHHHccCCCCHHHHHH
Q psy1820 95 SDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 95 ~el~~~l~~~~~~~~~~~~~~~ 116 (149)
+++..++... +..+++.++..
T Consensus 17 ~~m~~if~l~-~~~vs~~el~a 37 (68)
T PF07308_consen 17 DDMIEIFALA-GFEVSKAELSA 37 (68)
T ss_pred HHHHHHHHHc-CCccCHHHHHH
Confidence 4566666655 67777777775
No 172
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=40.93 E-value=94 Score=19.70 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=21.9
Q ss_pred hHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHH
Q psy1820 73 RDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELT 115 (149)
Q Consensus 73 ~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~ 115 (149)
...++..+|++|- ++.|+.+.+..++....|..++..++.
T Consensus 35 f~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~ 74 (122)
T PF06648_consen 35 FLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQID 74 (122)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHH
Confidence 3445556666664 345666666666555434455555554
No 173
>KOG3449|consensus
Probab=40.42 E-value=90 Score=19.36 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=35.2
Q ss_pred HHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHh
Q psy1820 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEA 125 (149)
Q Consensus 77 l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (149)
+..+|-+....++-..+..+++.+|... |.....+.++. ++...
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sV-G~E~d~e~i~~----visel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESV-GAEIDDERINL----VLSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHh-CcccCHHHHHH----HHHHh
Confidence 4456777777888889999999999998 88899888886 56554
No 174
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=39.87 E-value=76 Score=19.22 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=16.0
Q ss_pred HHHHhCCCCCCceeHHHHHHHHhhCCC
Q psy1820 121 VIEEADVDGDGKLSFMEFEHVILRAPD 147 (149)
Q Consensus 121 ~~~~~d~~~~g~I~~~eF~~~l~~~~~ 147 (149)
.++..+.+....++-++.+.+|..+|.
T Consensus 60 ~yk~l~l~~~~~~s~~e~~~~l~~~p~ 86 (105)
T cd03035 60 TWRKLDDAQKAALDAAKAIALMLEHPS 86 (105)
T ss_pred HHHhCChhhhccCCHHHHHHHHHhCcC
Confidence 344443332234677888888887764
No 175
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=38.34 E-value=86 Score=18.50 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCC
Q psy1820 91 YIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVD 128 (149)
Q Consensus 91 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 128 (149)
.||..||..+.+.. +.+++.++++. ++..+-.+
T Consensus 14 ~iT~~eLlkyskqy-~i~it~~QA~~----I~~~lr~k 46 (85)
T PF11116_consen 14 NITAKELLKYSKQY-NISITKKQAEQ----IANILRGK 46 (85)
T ss_pred cCCHHHHHHHHHHh-CCCCCHHHHHH----HHHHHhcC
Confidence 57778888888887 78888888776 44444333
No 176
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=38.16 E-value=66 Score=18.93 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q psy1820 93 GMSDLEIGIRLLTRSELSVQELTQVSEKVIE 123 (149)
Q Consensus 93 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (149)
+..||...+..- ...++..++..+++.++.
T Consensus 2 tk~eli~~ia~~-~~~~s~~~~~~vv~~~~~ 31 (94)
T PRK00199 2 TKSELIERLAAR-NPHLSAKDVENAVKEILE 31 (94)
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHHHHHHH
Confidence 455666655442 234666666654444444
No 177
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=38.02 E-value=57 Score=16.36 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=8.7
Q ss_pred CcccHHHHHHHHHHH
Q psy1820 90 QYIGMSDLEIGIRLL 104 (149)
Q Consensus 90 g~I~~~el~~~l~~~ 104 (149)
+.++..++...+..+
T Consensus 17 ~~~~~~~v~~~v~~L 31 (47)
T PF02671_consen 17 GRISRSEVIEEVSEL 31 (47)
T ss_dssp TCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 556666666655554
No 178
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=37.58 E-value=82 Score=18.48 Aligned_cols=20 Identities=20% Similarity=0.594 Sum_probs=13.8
Q ss_pred HHHHHHHhhHhcCCCCCccc
Q psy1820 74 DIKVFYAFKIYDFDNDQYIG 93 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~ 93 (149)
..++..||+++-.+++..+.
T Consensus 58 ~~EL~EA~rl~~~n~~~~l~ 77 (83)
T cd06404 58 QMELEEAFRLYELNKDSELN 77 (83)
T ss_pred HHHHHHHHHHHHhcCcccEE
Confidence 45778888888777665443
No 179
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=36.45 E-value=55 Score=18.85 Aligned_cols=26 Identities=8% Similarity=0.279 Sum_probs=13.5
Q ss_pred CCCcccHHHHHHHHHHHccCCCCHHHHHH
Q psy1820 88 NDQYIGMSDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~~~~~~~~~~~ 116 (149)
..|+||..++..+|... .++++.+..
T Consensus 18 ~~G~lT~~eI~~~L~~~---~~~~e~id~ 43 (82)
T PF03979_consen 18 KKGYLTYDEINDALPED---DLDPEQIDE 43 (82)
T ss_dssp HHSS-BHHHHHHH-S-S------HHHHHH
T ss_pred hcCcCCHHHHHHHcCcc---CCCHHHHHH
Confidence 36777777777777633 366666665
No 180
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=34.63 E-value=1.1e+02 Score=20.01 Aligned_cols=29 Identities=10% Similarity=0.281 Sum_probs=22.5
Q ss_pred HHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 76 ~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
.+..-....|..+.+++|..|++.++-.+
T Consensus 70 ~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 70 QLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 55556667788888999999999987543
No 181
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=34.50 E-value=1e+02 Score=18.20 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=33.1
Q ss_pred CCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 89 DQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 89 ~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
+-.|.+.+|+..|... ..-.+..+..+ +=..+|...++.||-=||--+.+
T Consensus 20 r~IVPW~~F~~~L~~~-h~~~~~~~~~a----Lk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKV-HPISSGLEAMA----LKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp -SEEEHHHHHHHHHHH-S--SSHHHHHH----HHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHh-cCCCchHHHHH----HHHHHhcccCCccchhhhHHHHH
Confidence 4579999999999887 33223233332 55568999999999888865543
No 182
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=34.34 E-value=66 Score=18.23 Aligned_cols=13 Identities=46% Similarity=0.516 Sum_probs=6.5
Q ss_pred CCceeHHHHHHHH
Q psy1820 52 QGNLNFEEFLELL 64 (149)
Q Consensus 52 ~g~I~~~ef~~~~ 64 (149)
.|++.-+||..++
T Consensus 28 ~Gkv~~ee~n~~~ 40 (75)
T TIGR02675 28 SGKLRGEEINSLL 40 (75)
T ss_pred cCcccHHHHHHHH
Confidence 3555555555444
No 183
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=34.16 E-value=88 Score=21.28 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=18.1
Q ss_pred CCCCCcccHHHHHHHHHHHccCCCCHHHHHH
Q psy1820 86 FDNDQYIGMSDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 86 ~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~ 116 (149)
-+.+|++..++|...+..- +..++.+++.+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~-~~~~t~~~i~~ 56 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFK-GLWVTEEDIRE 56 (186)
T ss_dssp --TT--EEHHHHHHHHHHT--TT--HHHHHH
T ss_pred cCCCCCEeHHHHHHHHHHc-CCCCCHHHHHH
Confidence 4678888888888887765 56677888776
No 184
>KOG1264|consensus
Probab=34.00 E-value=3.2e+02 Score=23.80 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=62.9
Q ss_pred ccccCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhH------hcCC
Q psy1820 14 HKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKI------YDFD 87 (149)
Q Consensus 14 ~~~~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~------~D~~ 87 (149)
...++..+++.++....+.-.......+++-..- -..+.++|..|-.+...++ -.... .....|.. =+..
T Consensus 158 ~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~--~~k~dlsf~~f~~ly~~lm-fs~~~-a~l~e~~~~~~~~~~~~~ 233 (1267)
T KOG1264|consen 158 ENSISARDLKTILPQVNFKVSSAKFLKEKFTEDG--ARKDDLSFEQFHLLYKKLM-FSQQK-AILLEFKKDFILGNTDRP 233 (1267)
T ss_pred hhheeHHhhhcccccceEEechHHHHHHHHhHhh--hccccccHHHHHHHHHHHh-hccch-hhhhcccchhhhcCCCCc
Confidence 3446667777666444422111111112221111 2367899999998887765 22111 11112211 1222
Q ss_pred CCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCC-----CCCCceeHHHHHHHHhhCC
Q psy1820 88 NDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADV-----DGDGKLSFMEFEHVILRAP 146 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~-----~~~g~I~~~eF~~~l~~~~ 146 (149)
..-.|+..+|.++|..- -......++.++ ...+..+-. -..-.+...||+.+|-...
T Consensus 234 d~~vV~~~ef~rFL~~~-Q~e~~Asdr~av-~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSre 295 (1267)
T KOG1264|consen 234 DASVVYLQEFQRFLIHE-QQEHWASDRNAV-REFMRKFIDDTMRETAEPYLFVDEFVTFLFSRE 295 (1267)
T ss_pred cceEeeHHHHHHHHHhh-hHHHhhhHHHHH-HHHHHHHHhhhhhhccCcceeHHHHHHHHhhcc
Confidence 33579999999988654 122222233322 122222211 1245799999999986543
No 185
>KOG4403|consensus
Probab=33.59 E-value=1.8e+02 Score=22.86 Aligned_cols=69 Identities=19% Similarity=0.128 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHH
Q psy1820 40 GQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQ 112 (149)
Q Consensus 40 ~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~ 112 (149)
...|-+.+|.+.+|.|+.+|--.++..-++......+-...|.. .+-.|+.++|..++....-.+.+.+
T Consensus 70 ir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~Sev~nWT~e 138 (575)
T KOG4403|consen 70 IRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKESEVHNWTNE 138 (575)
T ss_pred HHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhhhhhcchHH
Confidence 34567777888899999998777775543222222222224433 4668999999988876522234433
No 186
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=33.41 E-value=29 Score=23.68 Aligned_cols=31 Identities=16% Similarity=0.007 Sum_probs=26.0
Q ss_pred HHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
++..+.+|.-||..+=-..+-+++..+|...
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~ 84 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADA 84 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCc
Confidence 4578899999999988888888888888655
No 187
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=33.32 E-value=91 Score=20.72 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=44.6
Q ss_pred HHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCC
Q psy1820 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAP 146 (149)
Q Consensus 75 ~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 146 (149)
.+.+..|..+-. +=..++.++..++... -++.++++++++.+.+.... |..+..+..+.+...|
T Consensus 72 KEYhtsYs~vqa--NFqcs~~DLsdii~i~---f~~deel~~~~e~i~~~v~~---Gn~Sl~~lsr~l~~sp 135 (160)
T PF09824_consen 72 KEYHTSYSKVQA--NFQCSMEDLSDIIYIA---FMSDEELRDYVEKIEKEVEA---GNTSLSDLSRKLGISP 135 (160)
T ss_pred HHHHhhHhheee--eeEeeHHHHHHHHhee---ecCHHHHHHHHHHHHHHHHc---CCCcHHHHHHHhCCCH
Confidence 355555555543 4567888888888765 48889999988888887754 5567777766665555
No 188
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=32.74 E-value=1.2e+02 Score=18.69 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=29.2
Q ss_pred HHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHH
Q psy1820 79 YAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 79 ~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~ 116 (149)
.++-+.-..++..+|.+.+..+|... |....+..+..
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~Aa-GveVe~~~~~l 41 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSV-GVEVDDEKLNK 41 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHc-CCCccHHHHHH
Confidence 34555556677799999999999998 88888887775
No 189
>KOG3866|consensus
Probab=32.63 E-value=42 Score=25.01 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhh
Q psy1820 93 GMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144 (149)
Q Consensus 93 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 144 (149)
+..+++.++....|.....-+-. .+|...|.|++|.++-.|..+.+.+
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPK----TFF~LHD~NsDGfldeqELEaLFtk 272 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPK----TFFALHDLNSDGFLDEQELEALFTK 272 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcc----hheeeeccCCcccccHHHHHHHHHH
Confidence 45667777766533222222223 3888999999999999998887765
No 190
>KOG4301|consensus
Probab=31.20 E-value=2.4e+02 Score=21.52 Aligned_cols=92 Identities=11% Similarity=0.096 Sum_probs=55.6
Q ss_pred HHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHc----------cCCCCHHH
Q psy1820 44 CQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLT----------RSELSVQE 113 (149)
Q Consensus 44 ~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~----------~~~~~~~~ 113 (149)
...+|+.+.|.++.-.-...+..+| .+.-.++++-+|..... .+|.+..-.+-+++.... .++.++.-
T Consensus 116 LaA~ds~~~g~~~vfavkialatlc-~gk~~dklryIfs~isd-s~gim~~i~~~~fl~evlslpT~v~e~psfg~te~~ 193 (434)
T KOG4301|consen 116 LAAEDSEGQGKQQVFAVKIALATLC-GGKIKDKLRYIFSLISD-SRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTELS 193 (434)
T ss_pred HhhcCccCCCCceeecchhhhhhhc-cchHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHHH
Confidence 3444556777777666666666677 55556688889988854 577777777777776541 11222222
Q ss_pred HHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCC
Q psy1820 114 LTQVSEKVIEEADVDGDGKLSFMEFEHVILRAP 146 (149)
Q Consensus 114 ~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 146 (149)
++ ..|.. .-+++.+.|+..+...|
T Consensus 194 a~----~cf~q-----qrKv~Ln~fldtl~sdp 217 (434)
T KOG4301|consen 194 AR----LCFLQ-----QRKVELNQFLDTLMSDP 217 (434)
T ss_pred HH----HHHHH-----HHHHHHHHHHHHHhcCC
Confidence 22 24432 23567777777776654
No 191
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=28.98 E-value=1.6e+02 Score=18.95 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCCcccHHHHHHHHHHHc------cC--CCCHHHHHHHHHHHHHHhCCCCCC-ceeHHHHHHHH
Q psy1820 88 NDQYIGMSDLEIGIRLLT------RS--ELSVQELTQVSEKVIEEADVDGDG-KLSFMEFEHVI 142 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~------~~--~~~~~~~~~~~~~~~~~~d~~~~g-~I~~~eF~~~l 142 (149)
++-.||.+||.+++..-. |. .+.++++.. +.+.+...+.+ .++..|-+++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~----~~~~~~~~~~~~~lt~~e~Lr~~ 139 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRR----ALAFLEKAPKGEKLTLAEALRAA 139 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHH----HHHHHHhccccCCCCHHHHHHHh
Confidence 567888889988886531 11 677788876 66666655544 48888876653
No 192
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=28.78 E-value=1.5e+02 Score=18.46 Aligned_cols=38 Identities=5% Similarity=0.108 Sum_probs=29.5
Q ss_pred HHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHH
Q psy1820 78 FYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 78 ~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~ 116 (149)
..++-+.-..++..+|.+++..+|... |....+..+..
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~Aa-GveVd~~~~~l 43 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAV-NADVEDDVLDN 43 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHc-CCCccHHHHHH
Confidence 345555555677789999999999998 88888888775
No 193
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=28.74 E-value=47 Score=19.17 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=11.3
Q ss_pred CCceeHHHHHHHHh
Q psy1820 130 DGKLSFMEFEHVIL 143 (149)
Q Consensus 130 ~g~I~~~eF~~~l~ 143 (149)
++.||++||+.+-.
T Consensus 33 PmSIS~eeY~~LH~ 46 (81)
T PF10891_consen 33 PMSISFEEYIRLHI 46 (81)
T ss_pred ccEeeHHHHHHHHH
Confidence 57899999987654
No 194
>KOG2243|consensus
Probab=28.66 E-value=2e+02 Score=26.85 Aligned_cols=64 Identities=9% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCchHHHHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHH
Q psy1820 36 ENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGI 101 (149)
Q Consensus 36 ~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l 101 (149)
.+.+....++-+|+++.|.|+-.+|-..+.... .....++......-..+.+...+.++|..-+
T Consensus 4055 kdltssdtfkeydpdgkgiiskkdf~kame~~k--~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4055 KDLTSSDTFKEYDPDGKGIISKKDFHKAMEGHK--HYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred hhccccccchhcCCCCCccccHHHHHHHHhccc--cchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 345556677888999999999999998886432 1223355555556666777788888887643
No 195
>PHA02105 hypothetical protein
Probab=28.49 E-value=1.1e+02 Score=16.62 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=30.1
Q ss_pred cccHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHHHhCCCC--CCceeHHHHHHHHhhCCC
Q psy1820 91 YIGMSDLEIGIRLLT--RSELSVQELTQVSEKVIEEADVDG--DGKLSFMEFEHVILRAPD 147 (149)
Q Consensus 91 ~I~~~el~~~l~~~~--~~~~~~~~~~~~~~~~~~~~d~~~--~g~I~~~eF~~~l~~~~~ 147 (149)
+++.+++..++..-. ..++..+.+++ +-..+..-. =-.++|+||-.+|.-.|.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~q----l~svfsipqi~yvyls~~e~~si~p~ip~ 60 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQ----LKTVFSIPQIKYVYLSYEEFNSIMPFIPR 60 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHH----HHHhccccceEEEEEeHHHhccccccccc
Confidence 356777777765431 22444444544 333333332 246899999888876654
No 196
>PF11907 DUF3427: Domain of unknown function (DUF3427); InterPro: IPR021835 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 243 to 275 amino acids in length. This domain is found associated with PF04851 from PFAM, PF00271 from PFAM.
Probab=27.93 E-value=1.8e+02 Score=21.06 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=13.9
Q ss_pred CCcccHHHHHHHHHHHccCCCCHHHHHH
Q psy1820 89 DQYIGMSDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 89 ~g~I~~~el~~~l~~~~~~~~~~~~~~~ 116 (149)
.+.|+.+++...+... +...+++.++.
T Consensus 25 ~~~is~~~~~~~l~~~-~~~~~~~~~~s 51 (274)
T PF11907_consen 25 NSSISIEDFREILKEN-HIDIDEETLKS 51 (274)
T ss_pred cCCcCHHHHHHHHHHc-CccccHHHHHH
Confidence 4455555555555555 44444444443
No 197
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=27.79 E-value=1.9e+02 Score=19.28 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=15.8
Q ss_pred eHHHHHHHHHhhccCCChHHHHHHHhhHhc
Q psy1820 56 NFEEFLELLSVFSEQASRDIKVFYAFKIYD 85 (149)
Q Consensus 56 ~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D 85 (149)
|-+||+.-+....+..+. ++...+.+.|+
T Consensus 2 ~k~efL~~L~~~L~~lp~-~e~~e~l~~Y~ 30 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPE-EEREEILEYYE 30 (181)
T ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Confidence 456777777665533333 34555555554
No 198
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=27.77 E-value=26 Score=16.18 Aligned_cols=18 Identities=22% Similarity=0.566 Sum_probs=13.7
Q ss_pred HHHHHhCCCCCCceeHHH
Q psy1820 120 KVIEEADVDGDGKLSFME 137 (149)
Q Consensus 120 ~~~~~~d~~~~g~I~~~e 137 (149)
.++..-|.|+|-.|+-++
T Consensus 3 ~LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIED 20 (30)
T ss_pred hHhhccccCCCcEEEEec
Confidence 367788999998887553
No 199
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=27.39 E-value=1.4e+02 Score=17.71 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=29.0
Q ss_pred CcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCC
Q psy1820 90 QYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPD 147 (149)
Q Consensus 90 g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 147 (149)
...+.+++..++..+ + ...+++-.--...++..+......++-+|.+++|..+|.
T Consensus 34 ~~~~~~~l~~~~~~~-~--~~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~ 88 (105)
T cd02977 34 EPPTKEELKELLAKL-G--LGVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPK 88 (105)
T ss_pred CCCCHHHHHHHHHhc-C--CCHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcC
Confidence 344556666666554 2 112221110112344444443456888999999988875
No 200
>KOG1265|consensus
Probab=26.65 E-value=4.4e+02 Score=23.17 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=57.7
Q ss_pred cCHHHHHHHHHhhcccCCCCCchHHHHHHhhcCCCCCceeHHHHHHHHHhhcc---------CCChHHHHHHHhhHhcCC
Q psy1820 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSE---------QASRDIKVFYAFKIYDFD 87 (149)
Q Consensus 17 ~~~~el~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~I~~~ef~~~~~~~~~---------~~~~~~~l~~~f~~~D~~ 87 (149)
.++..+..++..+- .++..++|+.-+..++.-.++.++++.++-..+. .......+..+.+.|..+
T Consensus 205 f~~e~f~~~l~klc-----pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~ 279 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLC-----PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPN 279 (1189)
T ss_pred ccHHHHHHHHHhcC-----CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCc
Confidence 34566666665554 5667777777776666678999999999875442 122345677788888765
Q ss_pred ----CCCcccHHHHHHHHHH
Q psy1820 88 ----NDQYIGMSDLEIGIRL 103 (149)
Q Consensus 88 ----~~g~I~~~el~~~l~~ 103 (149)
..|.++.+.|...+..
T Consensus 280 ~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 280 SDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhhccccchhhhHHHhhC
Confidence 4789999999988764
No 201
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=25.97 E-value=1.6e+02 Score=17.81 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=13.2
Q ss_pred CCceeHHHHHHHHhhCCCC
Q psy1820 130 DGKLSFMEFEHVILRAPDS 148 (149)
Q Consensus 130 ~g~I~~~eF~~~l~~~~~~ 148 (149)
+|.|+-|||..-+...-+|
T Consensus 38 ~~~i~~EeF~~~Lq~~lns 56 (96)
T PF07531_consen 38 DGKIEAEEFTSKLQEELNS 56 (96)
T ss_dssp TTSS-HHHHHHHHHHHCTS
T ss_pred cCCCCHHHHHHHHHHHhcC
Confidence 3679999998888765554
No 202
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=25.88 E-value=1.2e+02 Score=17.58 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=11.8
Q ss_pred HHHHHHHHHccCCCCHHHHH
Q psy1820 96 DLEIGIRLLTRSELSVQELT 115 (149)
Q Consensus 96 el~~~l~~~~~~~~~~~~~~ 115 (149)
|+..+|+.+ |..++++|..
T Consensus 21 EIL~ALrkL-ge~Ls~eE~~ 39 (78)
T PF06384_consen 21 EILTALRKL-GEKLSPEEEA 39 (78)
T ss_dssp HHHHHHHHT-T----HHHHH
T ss_pred HHHHHHHHh-cCCCCHHHHH
Confidence 566778888 8999999876
No 203
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=25.65 E-value=1.3e+02 Score=17.54 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=20.4
Q ss_pred HHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q psy1820 101 IRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143 (149)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 143 (149)
|....|..++.+-.+. ...+++ ....+.|+++|.+.+..
T Consensus 38 LskeRgG~IP~~V~~s-l~kL~~---La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 38 LSKERGGQIPEKVMDS-LSKLYK---LAKENNVSFEELCVYAL 76 (82)
T ss_pred HHHhhCCCCCHHHHHH-HHHHHH---HHHHcCCCHHHHHHHHH
Confidence 3333344555544443 223343 33344589999887654
No 204
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=24.80 E-value=2.1e+02 Score=18.75 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=34.4
Q ss_pred CCCCceeHHHHHHHHHhhccCCC----hHHHHHHHhhHhcC--CCCCcccHHHHHHHHHHH
Q psy1820 50 DGQGNLNFEEFLELLSVFSEQAS----RDIKVFYAFKIYDF--DNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 50 ~~~g~I~~~ef~~~~~~~~~~~~----~~~~l~~~f~~~D~--~~~g~I~~~el~~~l~~~ 104 (149)
-.+|.++-+|-..++..+..... ..+.+...|+.+.. +-+..+.+.+....+..+
T Consensus 36 ~adg~~~~~e~~~~~~~~~s~~~L~~f~~~~i~~~~~~~~~~~~~d~~~gk~ea~~~I~~l 96 (144)
T COG3793 36 RADGEVDSEEKQKMVQFLRSSAALSVFDSNEINEIFETLVGSFDTDFEIGKREAMKEIEDL 96 (144)
T ss_pred hcccccChHHHHHHHHHHHcChhhhhccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Confidence 45777887877777766553221 12356667777655 346666677777777766
No 205
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.48 E-value=33 Score=23.27 Aligned_cols=65 Identities=11% Similarity=0.037 Sum_probs=39.6
Q ss_pred HHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q psy1820 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142 (149)
Q Consensus 74 ~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 142 (149)
++..+.+|.-||...=-..+-+++..++..- +.--....++.++..+-...+.... ++.+|+...
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~-~IIRnr~KI~Avi~NA~~~l~i~~e---sf~~ylW~f 116 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDD-GIIRNRGKIEATIANARAALQLEQN---DLVEFLWSF 116 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc-cchhhHHHHHHHHHHHHHHHHHHHc---cHHHHHHhc
Confidence 4578899999999887788888888888654 3333333444443322222222211 677777554
No 206
>PRK10026 arsenate reductase; Provisional
Probab=24.38 E-value=2.1e+02 Score=18.57 Aligned_cols=53 Identities=21% Similarity=0.158 Sum_probs=28.5
Q ss_pred cccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCCCCceeHHHHHHHHhhCCC
Q psy1820 91 YIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPD 147 (149)
Q Consensus 91 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 147 (149)
.++.+||..++..+ | ....++-.--+..++..+.+.+ .++.++.+..|..+|.
T Consensus 38 ppt~~eL~~~l~~~-g--~~~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~ 90 (141)
T PRK10026 38 PPTRDELVKLIADM-G--ISVRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPI 90 (141)
T ss_pred CcCHHHHHHHHHhC-C--CCHHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCcc
Confidence 45666676666655 3 2222221112224555444433 4688888888887764
No 207
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.97 E-value=2.1e+02 Score=20.29 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=30.5
Q ss_pred cCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q psy1820 85 DFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVI 122 (149)
Q Consensus 85 D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (149)
=-++.|.+....|...+..+ ...++..|+.++..++-
T Consensus 161 vG~gegQVpL~kL~~~l~KL-p~~lt~~ev~~v~~RL~ 197 (224)
T PF13829_consen 161 VGNGEGQVPLRKLQKTLMKL-PRNLTKAEVDAVNKRLR 197 (224)
T ss_pred ecCCCCceeHHHHHHHHHhC-CccCCHHHHHHHHHHHH
Confidence 35789999999999999999 77899999987555443
No 208
>KOG0042|consensus
Probab=23.22 E-value=1.6e+02 Score=24.17 Aligned_cols=62 Identities=6% Similarity=0.096 Sum_probs=42.7
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhhccCCChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 42 RICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 42 ~i~~~~~~~~~g~I~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
.-+..+|.+..+.+....-+..+...- .....+.+....+..|.+-+|.+...|+.+++..+
T Consensus 597 ~rf~~lD~~k~~~~~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 597 TRFAFLDADKKAYQAIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 344556666667666666666665443 34555677777888888888888888888887766
No 209
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=22.79 E-value=1.5e+02 Score=16.30 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=26.6
Q ss_pred CCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCCCC
Q psy1820 88 NDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDG 129 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 129 (149)
.++.++..++.+.+... |..++++.+.- .+..++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~-g~~~se~avRr----rLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLR-GEELSEEAVRR----RLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhc-ChhhhHHHHHH----HHHHHHHCC
Confidence 45678888888888877 77787777774 666665553
No 210
>KOG2301|consensus
Probab=22.54 E-value=86 Score=28.92 Aligned_cols=33 Identities=30% Similarity=0.280 Sum_probs=29.2
Q ss_pred ChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHH
Q psy1820 72 SRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104 (149)
Q Consensus 72 ~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~ 104 (149)
.+-+....+|..||++..|.|....+...+..+
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L 1446 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSL 1446 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhc
Confidence 334578889999999999999999999999887
No 211
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.85 E-value=1.6e+02 Score=16.35 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=24.1
Q ss_pred CCCcccHHHHHHHHHHHccCCCCHHHHHH
Q psy1820 88 NDQYIGMSDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 88 ~~g~I~~~el~~~l~~~~~~~~~~~~~~~ 116 (149)
.+--|+.+-++..+..+ |...++..+.+
T Consensus 28 ~NPpine~mir~M~~QM-G~kpSekqi~Q 55 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQM-GRKPSEKQIKQ 55 (64)
T ss_pred HCCCCCHHHHHHHHHHh-CCCccHHHHHH
Confidence 35678889999999999 89999999987
No 212
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=21.37 E-value=1.8e+02 Score=17.10 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=16.3
Q ss_pred ccHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q psy1820 92 IGMSDLEIGIRLLTRSELSVQELTQVSEKVIE 123 (149)
Q Consensus 92 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (149)
++..||...+... ..++..+++.+++.++.
T Consensus 2 mtk~eli~~ia~~--~~~s~~~v~~vv~~~~~ 31 (96)
T TIGR00987 2 LTKAEMSEYLFDE--LGLSKREAKELVELFFE 31 (96)
T ss_pred CCHHHHHHHHHHH--hCcCHHHHHHHHHHHHH
Confidence 4566666666543 24566666654444443
No 213
>PLN02859 glutamine-tRNA ligase
Probab=20.70 E-value=2.2e+02 Score=24.36 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=39.6
Q ss_pred CChHHHHHHHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Q psy1820 71 ASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEE 124 (149)
Q Consensus 71 ~~~~~~l~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (149)
......+..|++.+-..+...++..+|...+.. |..++++++...+..++..
T Consensus 83 IkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CGV--GV~VT~EqI~~~V~~~i~~ 134 (788)
T PLN02859 83 IKTPAQLEAAFSFFSSTGPESFDLNKFEEACGV--GVVVSPEDIEAAVNEVFEE 134 (788)
T ss_pred CCCHHHHHHHHHHHHhCCCCccCHHHHHHhCCC--CEEECHHHHHHHHHHHHHh
Confidence 334557888999997766668999999887754 7889999999876666653
No 214
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=20.69 E-value=1.6e+02 Score=16.07 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=13.4
Q ss_pred hcCCCCCcccHHHHHHHHHHHccCCCCHHHHHH
Q psy1820 84 YDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 84 ~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~ 116 (149)
+..+..+.++..++..+..-+....++++-+..
T Consensus 5 ~e~~~gr~ls~~e~~~i~~~~~~~~~~~evI~~ 37 (73)
T TIGR01446 5 FEENFGRMLSPFEMEDLKYWLDEFGNSPELIKE 37 (73)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 333333344544444433332222344555544
No 215
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=20.60 E-value=2.3e+02 Score=17.66 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=26.8
Q ss_pred HhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHH
Q psy1820 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQ 116 (149)
Q Consensus 80 ~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~ 116 (149)
+|-+.-..++..+|.+++..+|... |....+..+..
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~Aa-Gvevd~~~~~~ 41 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSV-GADADDDRIEL 41 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHc-CCcccHHHHHH
Confidence 3334444566789999999999998 78888777774
No 216
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.58 E-value=1.2e+02 Score=14.27 Aligned_cols=20 Identities=30% Similarity=0.440 Sum_probs=14.9
Q ss_pred cCHHHHHHHHHhhcccCCCC
Q psy1820 17 ITIAELRTMYLWKGLFSTQE 36 (149)
Q Consensus 17 ~~~~el~~~~~~~~~~~~~~ 36 (149)
++..+|+..++..|+...|.
T Consensus 4 l~v~eLk~~l~~~gL~~~G~ 23 (35)
T PF02037_consen 4 LTVAELKEELKERGLSTSGK 23 (35)
T ss_dssp SHHHHHHHHHHHTTS-STSS
T ss_pred CcHHHHHHHHHHCCCCCCCC
Confidence 56788999999988776654
No 217
>KOG0506|consensus
Probab=20.20 E-value=4.7e+02 Score=21.12 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=44.9
Q ss_pred HHhhHhcCCCCCcccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhCC----C-CCCceeHHHHHHHHh
Q psy1820 79 YAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADV----D-GDGKLSFMEFEHVIL 143 (149)
Q Consensus 79 ~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~----~-~~g~I~~~eF~~~l~ 143 (149)
.+|..|-...++.|.+..|..+|+.. |..-++--+.+..+ .++.++. + ..+.++.+-|..++.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkst-GLrtsDPRLk~mMd-~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKST-GLRTSDPRLKDMMD-EMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHc-CCCcCCchHHHHHH-HHHHHHhhhcccccceeecHHHHHHhhc
Confidence 47888877778999999999999998 77777666665333 2333442 2 246789999977654
Done!