RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1820
(149 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 63.1 bits (154), Expect = 2e-13
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
LI EL + + L ++ + G ++F EFL ++SV ++ ++
Sbjct: 36 LIDRNELGKIL--RSLGFNPSEAEINKLFEEID-AGNETVDFPEFLTVMSVKLKRGDKEE 92
Query: 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLT--RSELSVQELTQVSEKVIEEADVDGDGKL 133
++ AFK++D D+D YI + +L R+L LS +E+ EK+++E D DGDG++
Sbjct: 93 ELREAFKLFDKDHDGYISIGEL---RRVLKSLGERLSDEEV----EKLLKEYDEDGDGEI 145
Query: 134 SFMEFEHVILRAPDS 148
+ EF+ +I +P
Sbjct: 146 DYEEFKKLIKDSPTI 160
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 50.5 bits (121), Expect = 1e-08
Identities = 38/127 (29%), Positives = 71/127 (55%), Gaps = 17/127 (13%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVFSEQASR 73
IT EL T+ + S +NP + + +E DG G ++F EFL L++ +
Sbjct: 28 ITTKELGTV-----MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS 82
Query: 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTR--SELSVQELTQVSEKVIEEADVDGDG 131
+ ++ AFK++D D + +I ++L ++T +L+ +E+ +++I EADVDGDG
Sbjct: 83 EEEIKEAFKVFDRDGNGFISAAELR---HVMTNLGEKLTDEEV----DEMIREADVDGDG 135
Query: 132 KLSFMEF 138
++++ EF
Sbjct: 136 QINYEEF 142
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 44.5 bits (106), Expect = 3e-07
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSF 135
++ AF+++D D D I +L+ ++ L LS +E+ +++I E D DGDGK+ F
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEG-LSEEEI----DEMIREVDKDGDGKIDF 55
Query: 136 MEF 138
EF
Sbjct: 56 EEF 58
Score = 26.4 bits (59), Expect = 2.0
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLS 65
I+ EL+ K L + + +DG G ++FEEFLEL++
Sbjct: 17 ISADELKA--ALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 43.1 bits (102), Expect = 1e-06
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 82 KIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHV 141
K+ D D D YI + +L ++ L +L+ +E+ ++ E E D DGDG++SF EF
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKAL-GLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEA 59
Query: 142 I 142
+
Sbjct: 60 M 60
Score = 26.2 bits (58), Expect = 1.8
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 17 ITIAELRTMYLWKGLFSTQE--NPFGQRICQVFSEDGQGNLNFEEFLELL 64
I + ELR + GL T E + +DG G ++FEEFLE +
Sbjct: 11 IDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 43.9 bits (104), Expect = 3e-06
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 17/103 (16%)
Query: 50 DGQGNLNFEEFLELLSV-FSEQASRDIKVFYAFKIYDFDNDQYIGMSDL-----EIGIRL 103
DG G ++FEEFL++++ E+ R+ ++ AF+++D D I + +L E+G
Sbjct: 65 DGSGKIDFEEFLDIMTKKLGERDPRE-EILKAFRLFDDDKTGKISLKNLKRVAKELG-ET 122
Query: 104 LTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAP 146
+T EL QE+ I+EAD +GDG++S EF ++ +
Sbjct: 123 ITDEEL--QEM-------IDEADRNGDGEISEEEFYRIMKKTN 156
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 36.4 bits (85), Expect = 4e-04
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 81 FKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F+ D D D I S E L +S L L ++ + AD D DGKL EF
Sbjct: 5 FRSLDPDGDGLI--SGDEARP-FLGKSGLPRSVL----AQIWDLADTDKDGKLDKEEF 55
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 32.1 bits (74), Expect = 0.012
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 89 DQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
I +L+ + LL LS +E+ + E D DGDGK+SF EF
Sbjct: 2 KGLITREELKRALALL-GISLSEEEVDIL----FREFDTDGDGKISFEEF 46
Score = 25.2 bits (56), Expect = 3.7
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 51 GQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIG 93
+G + EE L++ S + +V F+ +D D D I
Sbjct: 1 EKGLITREELKRALALLGISLSEE-EVDILFREFDTDGDGKIS 42
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 30.9 bits (71), Expect = 0.019
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 119 EKVIEEADVDGDGKLSFMEFEHVI 142
++ +E D DGDGK+SF EF+ ++
Sbjct: 3 KEAFKEFDKDGDGKISFEEFKELL 26
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 30.7 bits (71), Expect = 0.019
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 119 EKVIEEADVDGDGKLSFMEFEHVI 142
+ + + D +GDGK+S E + ++
Sbjct: 2 KDLFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|193239 pfam12763, efhand_3, Cytoskeletal-regulatory complex EF hand. This
is an efhand family from the N-terminal of actin
cytoskeleton-regulatory complex END3 and similar
proteins from fungi and closely related species.
Length = 104
Score = 32.3 bits (74), Expect = 0.029
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 104 LTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
L S L +L K+ + AD+D DGKL F EF
Sbjct: 35 LKNSRLPDDQL----AKIWDLADIDSDGKLDFEEF 65
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 30.0 bits (69), Expect = 0.040
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 119 EKVIEEADVDGDGKLSFMEFEHVI 142
++ D DGDGK+ F EF+ ++
Sbjct: 3 KEAFRLFDKDGDGKIDFEEFKDLL 26
Score = 25.4 bits (57), Expect = 1.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 41 QRICQVFSEDGQGNLNFEEFLELLS 65
+ ++F +DG G ++FEEF +LL
Sbjct: 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100 hierarchy
contains only S-100 EF-hand domains, other EF-hands have
been modeled separately. S100 proteins are expressed
exclusively in vertebrates, and are implicated in
intracellular and extracellular regulatory activities.
Intracellularly, S100 proteins act as Ca-signaling or
Ca-buffering proteins. The most unusual characteristic
of certain S100 proteins is their occurrence in
extracellular space, where they act in a cytokine-like
manner through RAGE, the receptor for advanced glycation
products. Structural data suggest that many S100 members
exist within cells as homo- or heterodimers and even
oligomers; oligomerization contributes to their
functional diversification. Upon binding calcium, most
S100 proteins change conformation to a more open
structure exposing a hydrophobic cleft. This hydrophobic
surface represents the interaction site of S100 proteins
with their target proteins. There is experimental
evidence showing that many S100 proteins have multiple
binding partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such as
S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes
the ''fused'' gene family, a group of calcium binding
S100-related proteins. The ''fused'' gene family
includes multifunctional epidermal differentiation
proteins - profilaggrin, trichohyalin, repetin,
hornerin, and cornulin; functionally these proteins are
associated with keratin intermediate filaments and
partially crosslinked to the cell envelope. These
''fused'' gene proteins contain N-terminal sequence with
two Ca-binding EF-hands motif, which may be associated
with calcium signaling in epidermal cells and
autoprocessing in a calcium-dependent manner. In
contrast to S100 proteins, "fused" gene family proteins
contain an extraordinary high number of almost perfect
peptide repeats with regular array of polar and charged
residues similar to many known cell envelope proteins.
Length = 88
Score = 28.6 bits (65), Expect = 0.41
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 119 EKVIEEADVDGDGKLSFMEF 138
+K++++ DV+ DGK+ F EF
Sbjct: 54 DKIMKDLDVNKDGKVDFQEF 73
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 29.8 bits (67), Expect = 0.47
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 36 ENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMS 95
E F +RI + D G L+F EF +L+ F + K FK D + D + +
Sbjct: 177 ERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVA-ANKKEELFKAADLNGDGVVTID 235
Query: 96 DL 97
+L
Sbjct: 236 EL 237
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 29.7 bits (67), Expect = 0.62
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 112 QELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPDS 148
Q L + E V E AD+ G G ++ +EF P +
Sbjct: 332 QRLASLRETVPEIADIRGPGFMNAVEFNDADSGLPSA 368
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs that
recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 28.0 bits (63), Expect = 0.72
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 103 LLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
+L +S L L K+ AD+D DG+L EF
Sbjct: 35 ILLKSGLPQTLL----AKIWNLADIDNDGELDKDEF 66
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 26.0 bits (58), Expect = 1.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLL 104
AFK++D D D YI +L +R L
Sbjct: 5 AFKLFDKDGDGYISAEELRKALRSL 29
Score = 24.1 bits (53), Expect = 6.8
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 119 EKVIEEADVDGDGKLSFMEFEHVI 142
+ + D DGDG +S E +
Sbjct: 3 REAFKLFDKDGDGYISAEELRKAL 26
>gnl|CDD|131925 TIGR02878, spore_ypjB, sporulation protein YpjB. Members of this
protein, YpjB, family are restricted to a subset of
endospore-forming bacteria, including Bacillus species
but not CLostridium or some others. In Bacillus
subtilis, ypjB was found to be part of the sigma-E
regulon, where sigma-E is a sporulation sigma factor
that regulates expression in the mother cell
compartment. Null mutants of ypjB show a sporulation
defect. This protein family is not, however, a part of
the endospore formation minimal gene set [Cellular
processes, Sporulation and germination].
Length = 233
Score = 27.8 bits (62), Expect = 1.8
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 57 FEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS-ELSVQELT 115
+EE ++L FS+Q F + D + M L R +T + E +VQ LT
Sbjct: 21 YEEAKQVLEYFSKQ----------FVSAGKEKDPMLTMDQL----RTITLTYERAVQALT 66
Query: 116 Q 116
Sbjct: 67 A 67
>gnl|CDD|143652 cd07828, nitrobindin, nitrobindin heme-binding domain.
Nitrobindin is a heme-containing lipocalin that may
reversibly bind nitric oxide. This heme-binding domain
forms a beta barrel structure, and in a small family of
proteins from tetrapods, it is found C-terminal to a
THAP zinc finger domain (a sequence-specific DNA
binding domain). Members of this group are putatively
related to fatty acid-binding proteins (FABPs).
Length = 148
Score = 26.8 bits (60), Expect = 3.3
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 34 TQENPFGQRICQVFSEDGQGNLNFE 58
+E +G+ I FS DGQ LN+
Sbjct: 22 IEEFTYGEEI--TFSHDGQPFLNYT 44
>gnl|CDD|240154 cd05027, S-100B, S-100B: S-100B domain found in proteins similar to
S100B. S100B is a calcium-binding protein belonging to a
large S100 vertebrate-specific protein family within the
EF-hand superfamily of calcium-binding proteins. Note
that the S-100 hierarchy, to which this S-100B group
belongs, contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. S100B is most
abundant in glial cells of the central nervous system,
predominately in astrocytes. S100B is involved in signal
transduction via the inhibition of protein
phoshorylation, regulation of enzyme activity and by
affecting the calcium homeostasis. Upon calcium binding
the S100B homodimer changes conformation to expose a
hydrophobic cleft, which represents the interaction site
of S100B with its more than 20 known target proteins.
These target proteins include several cellular
architecture proteins such as tubulin and GFAP; S100B
can inhibit polymerization of these oligomeric
molecules. Furthermore, S100B inhibits the
phosphorylation of multiple kinase substrates including
the Alzheimer protein tau and neuromodulin (GAP-43)
through a calcium-sensitive interaction with the protein
substrates.
Length = 88
Score = 26.4 bits (58), Expect = 3.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 116 QVSEKVIEEADVDGDGKLSFMEF 138
+V +KV+E D DGDG+ F EF
Sbjct: 51 EVVDKVMETLDSDGDGECDFQEF 73
>gnl|CDD|204523 pfam10591, SPARC_Ca_bdg, Secreted protein acidic and rich in
cysteine Ca binding region. The SPARC_Ca_bdg domain of
Secreted Protein Acidic and Rich in Cysteine is
responsible for the anti-spreading activity of human
urothelial cells. It is rich in alpha-helices. This
extracellular calcium-binding domain contains two
EF-hands that each coordinates one Ca2+ ion, forming a
helix-loop-helix structure that not only drives the
conformation of the protein but is also necessary for
biological activity. The anti-spreading activity was
dependent on the coordination of Ca2+ by a Glu residue
at the Z position of EF-hand 2.
Length = 112
Score = 26.5 bits (59), Expect = 3.4
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 58 EEFLELLSVFSEQASRDIK--VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELT 115
+ + ELL ++ K + + F D ++D L+RSEL+
Sbjct: 34 DHYSELLKRDEQKNYPMCKDPLGWMFNQLDTNHD------------GYLSRSELAPLRAP 81
Query: 116 QV-----SEKVIEEADVDGDGKLSFMEF 138
V + + D D DG +S E+
Sbjct: 82 LVPMEHCIKPFFKSCDADKDGLISLREW 109
>gnl|CDD|240152 cd05025, S-100A1, S-100A1: S-100A1 domain found in proteins similar
to S100A1. S100A1 is a calcium-binding protein belonging
to a large S100 vertebrate-specific protein family
within the EF-hand superfamily of calcium-binding
proteins. Note that the S-100 hierarchy, to which this
S-100A1 group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately. As
is the case with many other members of S100 protein
family, S100A1 is implicated in intracellular and
extracellular regulatory activities, including
interaction with myosin-associated twitchin kinase,
actin-capping protein CapZ, sinapsin I, and tubulin.
Structural data suggests that S100A1 proteins exist
within cells as antiparallel homodimers, while
heterodimers with S100A4 and S100B also has been
reported. Upon binding calcium S100A1 changes
conformation to expose a hydrophobic cleft which is the
interaction site of S100A1 with its more that 20 known
target proteins.
Length = 92
Score = 26.4 bits (58), Expect = 3.4
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELS----VQELTQVSEKVIEEADVDGD 130
I VF+A + D+Y +S E+ + L ++ELS Q+ +K+++E D +GD
Sbjct: 12 INVFHAHS--GKEGDKY-KLSKKEL--KDLLQTELSDFLDAQKDADAVDKIMKELDENGD 66
Query: 131 GKLSFMEF 138
G++ F EF
Sbjct: 67 GEVDFQEF 74
>gnl|CDD|236747 PRK10736, PRK10736, hypothetical protein; Provisional.
Length = 374
Score = 27.2 bits (61), Expect = 4.0
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 94 MSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVD 128
M D EI +RL++ S L ++ +++ +++ ++ +D
Sbjct: 1 MVDTEIWLRLMSVSSLYGDKMVRIAHRLLAQSQID 35
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 27.3 bits (61), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 1 MTGVEPTTVRVPV---HKLITIAELRTM 25
M GV+P+ + PV H +TIA L +
Sbjct: 277 MAGVDPSIMDGPVAAVHDALTIAGLLAL 304
>gnl|CDD|165096 PHA02728, PHA02728, uncharacterized protein; Provisional.
Length = 184
Score = 26.6 bits (58), Expect = 4.4
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 60 FLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQE 113
F++ +SV++ + +I+ FY+ YD ++ I D++ + LT+ E++VQ+
Sbjct: 82 FIDTVSVYTSHDNLNIQ-FYSRDEYDTQSEDKICTIDVKARCKHLTKPEVTVQQ 134
>gnl|CDD|234646 PRK00117, recX, recombination regulator RecX; Reviewed.
Length = 157
Score = 26.0 bits (58), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 101 IRLLTRSELSVQELTQ------VSEKVIEEA 125
+RLL R E S EL + SE+VIE
Sbjct: 18 LRLLARREHSRAELRRKLAAKGFSEEVIEAV 48
>gnl|CDD|165159 PHA02800, PHA02800, hypothetical protein; Provisional.
Length = 161
Score = 25.7 bits (56), Expect = 9.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 48 SEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKI 83
E LN +E + L++ SE+ +D K F F I
Sbjct: 101 PEKNDPLLNLKELIGFLAILSEEIKKDTKFFALFNI 136
>gnl|CDD|240156 cd05030, calgranulins, Calgranulins: S-100 domain found in proteins
belonging to the Calgranulin subgroup of the S100 family
of EF-hand calcium-modulated proteins, including S100A8,
S100A9, and S100A12 . Note that the S-100 hierarchy, to
which this Calgranulin group belongs, contains only
S-100 EF-hand domains, other EF-hands have been modeled
separately. These proteins are expressed mainly in
granulocytes, and are involved in inflammation, allergy,
and neuritogenesis, as well as in host-parasite
response. Calgranulins are modulated not only by
calcium, but also by other metals such as zinc and
copper. Structural data suggested that calgranulins may
exist in multiple structural forms, homodimers, as well
as hetero-oligomers. For example, the S100A8/S100A9
complex called calprotectin plays important roles in the
regulation of inflammatory processes, wound repair, and
regulating zinc-dependent enzymes as well as microbial
growth.
Length = 88
Score = 25.0 bits (55), Expect = 9.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 119 EKVIEEADVDGDGKLSFMEF 138
+K+ E+ D + DG+LSF EF
Sbjct: 54 DKIFEDLDTNQDGQLSFEEF 73
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional.
Length = 460
Score = 25.9 bits (58), Expect = 9.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 97 LEIGIRLLTRSELSVQELTQVSEKVIEE 124
L++G LL S L EL ++ ++ IE+
Sbjct: 426 LDLGWELL--SILPESELKRIKDEYIEK 451
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.387
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,641,771
Number of extensions: 689780
Number of successful extensions: 685
Number of sequences better than 10.0: 1
Number of HSP's gapped: 672
Number of HSP's successfully gapped: 52
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.3 bits)