RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1820
(149 letters)
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 120 bits (303), Expect = 2e-35
Identities = 54/118 (45%), Positives = 81/118 (68%), Gaps = 5/118 (4%)
Query: 35 QENPFGQRICQVFSED-GQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIG 93
+ NPF +RIC+VFS + +L+FE+FL+LLSVFS+ A+ DIK YAF+I+DFD+D +
Sbjct: 88 KANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLN 147
Query: 94 MSDLEIGIRLLTR----SELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPD 147
DL + LT + LS E+ Q+ + ++EE+D+D DG ++ EF+HVI R+PD
Sbjct: 148 REDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPD 205
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 120 bits (302), Expect = 3e-35
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
LI E + + N F RI VF G + F EF+ L VF A
Sbjct: 55 LIHKEEFQLALFRNRN---RRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHE 111
Query: 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS---ELSVQELTQVSEKVIEEADVDGDGK 132
KV +AFK+YD +I +L+ + L LS + + +K +AD DGK
Sbjct: 112 KVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGK 171
Query: 133 LSFMEFEHVILRAPD 147
+ E++ + P
Sbjct: 172 IDIDEWKDFVSLNPS 186
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 117 bits (295), Expect = 1e-34
Identities = 44/126 (34%), Positives = 75/126 (59%), Gaps = 6/126 (4%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
+++ E ++ Q+NP QR+ +F DG G ++F+EF+E +S FS + ++ K
Sbjct: 23 LSVEEFMSL------PELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQK 76
Query: 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFM 136
+ +AF+IYD D D YI +L ++++ + L +L Q+ +K I AD DGDG++SF
Sbjct: 77 LRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFE 136
Query: 137 EFEHVI 142
EF V+
Sbjct: 137 EFCAVV 142
Score = 39.1 bits (92), Expect = 1e-04
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 75 IKVFY-AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKL 133
IK FK D DN + + + L + ++VI+ D DG+G++
Sbjct: 5 IKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLV---------QRVIDIFDTDGNGEV 55
Query: 134 SFMEFEHVILR 144
F EF + +
Sbjct: 56 DFKEFIEGVSQ 66
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 117 bits (295), Expect = 2e-34
Identities = 54/117 (46%), Positives = 80/117 (68%), Gaps = 5/117 (4%)
Query: 36 ENPFGQRICQVFSED-GQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGM 94
NPF +RIC+VFS + +L+FE+FL+LLSVFS+ A+ DIK YAF+I+DFD+D +
Sbjct: 58 ANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNR 117
Query: 95 SDLEIGIRLLTR----SELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPD 147
DL + LT + LS E+ Q+ + ++EE+D+D DG ++ EF+HVI R+PD
Sbjct: 118 EDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPD 174
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 117 bits (296), Expect = 3e-34
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 21/144 (14%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVF--------- 67
++ + + + NP G RI F +G+ +NF F+ L+ F
Sbjct: 46 LSREDFQRIP------ELAINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKS 99
Query: 68 ------SEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKV 121
SR K+ +AF++YD D D I +L +R++ +S ++L ++++
Sbjct: 100 KDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRT 159
Query: 122 IEEADVDGDGKLSFMEFEHVILRA 145
I+EAD DGD +SF EF V+ +
Sbjct: 160 IQEADQDGDSAISFTEFVKVLEKV 183
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 118 bits (296), Expect = 5e-34
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
LI E + +E+ F R+ +F G L FEEF LSVF A D
Sbjct: 66 LINKEEFQLALFKTNK---KESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNAPIDD 122
Query: 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTR---SELSVQELTQVSEKVIEEADVDGDGK 132
K+ ++F++YD +I +++ + L + + +K EEAD DGK
Sbjct: 123 KIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGK 182
Query: 133 LSFMEFEHVILRAPD 147
+ E+ ++LR P
Sbjct: 183 IDKEEWRSLVLRHPS 197
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 115 bits (289), Expect = 3e-33
Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 22/145 (15%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVF--------- 67
++ +L+ + + NP G RI + F DG ++F F+ +L+ F
Sbjct: 46 LSRMDLQQIG------ALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTE 99
Query: 68 -------SEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEK 120
SR K+ YAF++YD D D I ++ +RL+ +++ ++L ++++
Sbjct: 100 TQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADR 159
Query: 121 VIEEADVDGDGKLSFMEFEHVILRA 145
++EAD DGDG +SF+EF + +
Sbjct: 160 TVQEADEDGDGAVSFVEFTKSLEKM 184
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 96.8 bits (241), Expect = 3e-26
Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
+ + +Y F + F + VF +D G ++FEEF+ +LS S + + +
Sbjct: 42 QLAREDFVKIYKQFFPFGS-PEDFANHLFTVFDKDNNGFIHFEEFITVLSTTS-RGTLEE 99
Query: 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLL-------TRSELSVQELTQVSEKVIEEADVD 128
K+ +AF++YD ++D YI ++ + + +K+ + D +
Sbjct: 100 KLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKN 159
Query: 129 GDGKLSFMEFEHVILRAPD 147
DG ++ EF P
Sbjct: 160 EDGYITLDEFREGSKVDPS 178
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 96.5 bits (240), Expect = 4e-26
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
+ A + +Y F F + VF E+ G + F EF++ LSV S + + D
Sbjct: 42 QLDAAGFQKIYKQFFPFGD-PTKFATFVFNVFDENKDGRIEFSEFIQALSVTS-RGTLDE 99
Query: 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLL-------TRSELSVQELTQVSEKVIEEADVD 128
K+ +AFK+YD DND YI +++ + + + +++ D +
Sbjct: 100 KLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKN 159
Query: 129 GDGKLSFMEFEHVILRAPD 147
DGKL+ EF+ P
Sbjct: 160 ADGKLTLQEFQEGSKADPS 178
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 94.5 bits (235), Expect = 3e-25
Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
+++ E + +Y + + F + + + F +G G ++F EF+ LSV S + +
Sbjct: 42 HLSMEEFKKIYGNFFPYGD-ASKFAEHVFRTFDANGDGTIDFREFIIALSVTS-RGKLEQ 99
Query: 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELT-------QVSEKVIEEADVD 128
K+ +AF +YD D + YI +++ ++ + + SV ++ + +EK+ + D +
Sbjct: 100 KLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTN 159
Query: 129 GDGKLSFMEFEHVILRAPD 147
DGKLS EF P
Sbjct: 160 RDGKLSLEEFIRGAKSDPS 178
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 94.1 bits (234), Expect = 3e-25
Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 9/139 (6%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
++ + +Y + + + F G++ FE+F+ LS+ + +
Sbjct: 35 VVNEETFKQIYAQFFPHGD-ASTYAHYLFNAFDTTQTGSVKFEDFVTALSILL-RGTVHE 92
Query: 76 KVFYAFKIYDFDNDQYIGMSDLE-------IGIRLLTRSELSVQELTQVSEKVIEEADVD 128
K+ + F +YD + D YI ++ + T L Q + ++ D +
Sbjct: 93 KLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKN 152
Query: 129 GDGKLSFMEFEHVILRAPD 147
DG ++ EF +
Sbjct: 153 KDGIVTLDEFLESXQEDDN 171
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 95.0 bits (236), Expect = 4e-25
Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 9/141 (6%)
Query: 14 HKLITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASR 73
++ + +Y + + + F G++ FE+F+ LS+ + +
Sbjct: 66 SGVVNEETFKQIYAQFFPHGD-ASTYAHYLFNAFDTTQTGSVKFEDFVTALSILL-RGTV 123
Query: 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL-------TRSELSVQELTQVSEKVIEEAD 126
K+ + F +YD + D YI ++ ++ + T L Q + ++ D
Sbjct: 124 HEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMD 183
Query: 127 VDGDGKLSFMEFEHVILRAPD 147
+ DG ++ EF +
Sbjct: 184 KNKDGIVTLDEFLESCQEDDN 204
Score = 38.0 bits (88), Expect = 4e-04
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 41 QRICQVF-SEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEI 99
Q + + F +E G +N E F ++ + F Y F +D + D
Sbjct: 54 QVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVT 113
Query: 100 GIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142
+ S L + + D++ DG ++ E ++
Sbjct: 114 AL-----SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIV 151
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 93.4 bits (232), Expect = 1e-24
Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 9/139 (6%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
++ + +Y + + F D G ++FE+F++ LS+ + +
Sbjct: 81 VVNEETFKEIYSQFFP-QGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILL-RGTVQE 138
Query: 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLL-------TRSELSVQELTQVSEKVIEEADVD 128
K+ +AF +YD + D YI ++ ++ + T L Q E ++ D +
Sbjct: 139 KLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKN 198
Query: 129 GDGKLSFMEFEHVILRAPD 147
DG ++ EF + +
Sbjct: 199 KDGVVTIDEFIESCQKDEN 217
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 90.6 bits (225), Expect = 8e-24
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
+ +E + +Y F + F + + VF D G ++F+EF+ LSV S + +
Sbjct: 42 HLNKSEFQKIYKQFFPFGD-PSAFAEYVFNVFDADKNGYIDFKEFICALSVTS-RGELND 99
Query: 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLL-------TRSELSVQELTQVSEKVIEEADVD 128
K+ +AF++YD DN+ I ++ + + + + K+ D +
Sbjct: 100 KLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKN 159
Query: 129 GDGKLSFMEFEHVILRAPD 147
DG+L+ EF R P
Sbjct: 160 KDGQLTLEEFCEGSKRDPT 178
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 89.3 bits (221), Expect = 3e-23
Identities = 26/141 (18%), Positives = 57/141 (40%), Gaps = 11/141 (7%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
IT + +++Y + + Q + + F + G L+F+E++ L + + +
Sbjct: 50 RITQQQFQSIYAKFFPDTD-PKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTT-AGKTNQ 107
Query: 76 KVFYAFKIYDFDNDQYIGMSDL---------EIGIRLLTRSELSVQELTQVSEKVIEEAD 126
K+ +AF +YD D + I +++ I + + +EK+ +
Sbjct: 108 KLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFG 167
Query: 127 VDGDGKLSFMEFEHVILRAPD 147
+ D KL+ EF L +
Sbjct: 168 KNDDDKLTEKEFIEGTLANKE 188
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 90.1 bits (223), Expect = 5e-23
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 36 ENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMS 95
+ + F DG G ++FE+F+ LS+ + + K+ +AF +YD + D I
Sbjct: 127 ATTYAHFLFNAFDADGNGAIHFEDFVVGLSILL-RGTVHEKLKWAFNLYDINKDGCITKE 185
Query: 96 DLEIGIRLL-------TRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPD 147
++ ++ + T L + E+ ++ D + DG ++ EF + +
Sbjct: 186 EMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDEN 244
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 84.4 bits (209), Expect = 2e-21
Identities = 31/134 (23%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
+T+ E + + K L + N + +++ + F + G ++F E++ LS+ + D
Sbjct: 31 QLTLYEFKQFFGLKNLSPS-ANKYVEQMFETFDFNKDGYIDFMEYVAALSLVL-KGKVDQ 88
Query: 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELT--QVSEKVIEEADVDGDGKL 133
K+ + FK+YD D + I +L I+ + + +T + + V ++ D++GDG+L
Sbjct: 89 KLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGEL 148
Query: 134 SFMEFEHVILRAPD 147
S EF + +
Sbjct: 149 SLEEFMEGVQKDEV 162
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 83.3 bits (206), Expect = 8e-21
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
L T+ E +T+ +GL N ++ F + G ++F EF+ +++ Q +
Sbjct: 36 LQTLHEFKTLLGLQGLNQK-ANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIM-QEKMEQ 93
Query: 76 KVFYAFKIYDFDNDQYIGMSDL-EIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134
K+ + FK+YD D + I ++L ++ + + + + V + D++ DG+L+
Sbjct: 94 KLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELT 153
Query: 135 FMEFEHVILRAPD 147
EF + + + D
Sbjct: 154 LEEFINGMAKDQD 166
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 77.5 bits (191), Expect = 1e-18
Identities = 25/144 (17%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI 75
+ + E + + K + + + + + + F +G ++F E++ L++ + + +
Sbjct: 39 TLFMHEFKRFF--KVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVL-RGTLEH 95
Query: 76 KVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVS------------EKVIE 123
K+ + FKIYD D + I +L + + + + + + +++
Sbjct: 96 KLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFL 155
Query: 124 EADVDGDGKLSFMEFEHVILRAPD 147
D +GDG+LS EF R
Sbjct: 156 LVDENGDGQLSLNEFVEGARRDKW 179
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 69.6 bits (170), Expect = 4e-16
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 58 EEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSE-------LS 110
E +++ + S + FK++D+D + + +L I + + E +S
Sbjct: 51 EHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMS 110
Query: 111 VQELTQVSEKVIEEADVDGDGKLSFMEF 138
EL + + V+ + D + DG + + EF
Sbjct: 111 EDELINIIDGVLRDDDKNNDGYIDYAEF 138
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 65.7 bits (161), Expect = 2e-14
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
IT +L+ GL + DG G +++ EF+ ++ +Q S+
Sbjct: 69 ITKEQLKKGLEKDGLKLPYNF---DLLLDQIDSDGSGKIDYTEFIAA-ALDRKQLSKK-L 123
Query: 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFM 136
++ AF+++D DND I ++L + + Q +++I + D + DGK+ F
Sbjct: 124 IYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFH 183
Query: 137 EF 138
EF
Sbjct: 184 EF 185
Score = 40.7 bits (96), Expect = 4e-05
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F + D D YI L+ G+ +L + ++++ D DG GK+ + EF
Sbjct: 57 TFLVLDEDGKGYITKEQLKKGLEKDG------LKLPYNFDLLLDQIDSDGSGKIDYTEF 109
Score = 29.1 bits (66), Expect = 0.40
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELL 64
IT AEL + R+ ++ + + G ++F EF E++
Sbjct: 139 ITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMM 189
Score = 27.2 bits (61), Expect = 1.7
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 18/102 (17%)
Query: 45 QVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSD-LEIGIRL 103
V EDG+G + E+ + L + + + D D I ++ + +
Sbjct: 59 LVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLL--LDQIDSDGSGKIDYTEFIAAALDR 116
Query: 104 LTRSELSVQELTQVSEKVIEEA----DVDGDGKLSFMEFEHV 141
Q+S+K+I A DVD DG+++ E H+
Sbjct: 117 -----------KQLSKKLIYCAFRVFDVDNDGEITTAELAHI 147
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 64.6 bits (158), Expect = 7e-14
Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 17/131 (12%)
Query: 17 ITIAELRTMY------LWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVF 67
+ EL Y + + + + D G + + EF+ +
Sbjct: 57 LDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEFVTVCMDK 116
Query: 68 SEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADV 127
SR+ ++ AF+ +D D I +L RL +E+ + +V++E D
Sbjct: 117 QLLLSRE-RLLAAFQQFDSDGSGKITNEELG---RLFGVTEVDDETW----HQVLQECDK 168
Query: 128 DGDGKLSFMEF 138
+ DG++ F EF
Sbjct: 169 NNDGEVDFEEF 179
Score = 39.2 bits (92), Expect = 1e-04
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSV-----QELTQVS-EKVIEEADVDGDGKL 133
F+ D + D + +L G R L + + + + +++ D D +G +
Sbjct: 45 IFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYI 104
Query: 134 SFMEF 138
+ EF
Sbjct: 105 EYSEF 109
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 63.1 bits (154), Expect = 7e-14
Identities = 17/104 (16%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIG 100
+ + + + +E+ L +++ + ++ F + I L
Sbjct: 6 KSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRN 65
Query: 101 IRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144
+L +S ++ + ++ E D+DGDG L+ EF +++R
Sbjct: 66 SGILGIEGMSKEDA----QGMVREGDLDGDGALNQTEFCVLMVR 105
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 62.2 bits (152), Expect = 2e-13
Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVFS--EQA 71
++ E++ + + Q + +F DG G ++ EF + + +
Sbjct: 17 VSYEEVKA-----FVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLS 71
Query: 72 SRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDG 131
I + +K+ D D D + ++ + ++++ + + +AD +GDG
Sbjct: 72 DDKIGLKVLYKLMDVDGDGKLTKEEVT---SFFK--KHGIEKV----AEQVMKADANGDG 122
Query: 132 KLSFMEF 138
++ EF
Sbjct: 123 YITLEEF 129
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
FK D + D + +++ + R+ + Q L + + + D DG+G++ EF
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKK-RAIKNEQLL----QLIFKSIDADGNGEIDQNEFA 59
Query: 140 HVILR 144
Sbjct: 60 KFYGS 64
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 65.1 bits (159), Expect = 2e-13
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 14/139 (10%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFG------QRICQVFSEDGQGNLNFEEFLELLSVFSEQ 70
+ EL Y I D G +++ EF+ + ++ +
Sbjct: 363 LDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTV-AMDRKS 421
Query: 71 ASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGD 130
K+ AF+ +D D + I + +L L + +E +I D + D
Sbjct: 422 LLSKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKE-------MISGIDSNND 474
Query: 131 GKLSFMEFEHVILRAPDSS 149
G + F EF +I + ++
Sbjct: 475 GDVDFEEFCKMIQKLCSNN 493
Score = 37.0 bits (86), Expect = 0.001
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKV---IEEADVDGDGKLSFM 136
F+ D + D + +L G L+ E++V +L Q+ +V + AD D +G + +
Sbjct: 351 IFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYS 410
Query: 137 EF 138
EF
Sbjct: 411 EF 412
Score = 25.4 bits (56), Expect = 8.0
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 90 QYIGMSDL-EIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144
++ L + + + S +E ++++ + D +GDG+L E +
Sbjct: 320 KFQNSQKLAQAALLYMASKLTSQEETKELTD-IFRHIDKNGDGQLDRQELIDGYSK 374
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 64.7 bits (158), Expect = 3e-13
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 14/128 (10%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFG------QRICQVFSEDGQGNLNFEEFLELLSVFSEQ 70
+ EL Y F + I + D G + + EF+ + + +
Sbjct: 372 LDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISV-CMDKQI 430
Query: 71 ASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGD 130
+ ++ AF ++D D I +L L + SE + + V+ EAD + D
Sbjct: 431 LFSEERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWND-------VLGEADQNKD 483
Query: 131 GKLSFMEF 138
+ F EF
Sbjct: 484 NMIDFDEF 491
Score = 37.0 bits (86), Expect = 0.001
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVS---EKVIEEADVDGDGKLSFM 136
FK D + D + +L G +L + + EL V + +++E D D +G + +
Sbjct: 360 IFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYS 419
Query: 137 EF 138
EF
Sbjct: 420 EF 421
Score = 26.6 bits (59), Expect = 3.4
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELL 64
IT EL ++ GL S E + + + + ++F+EF+ ++
Sbjct: 452 ITKEELANLF---GLTSISEKTWNDVLGEADQ-NKDNMIDFDEFVSMM 495
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 62.1 bits (152), Expect = 3e-13
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVFSEQASR 73
IT EL+ GL N I + D G ++++EF+ ++
Sbjct: 44 ITFEELKA-----GLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNKIERE 98
Query: 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKL 133
D +F AF +D D YI +L+ + + + E+++ + D D DG++
Sbjct: 99 D-HLFAAFTYFDKDGSGYITPDELQ---QACEEFGVEDVRI----EELMRDVDQDNDGRI 150
Query: 134 SFMEF 138
+ EF
Sbjct: 151 DYNEF 155
Score = 42.9 bits (102), Expect = 5e-06
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F + D D I +L+ G++ + + L E+ +++ ADVD G + + EF
Sbjct: 32 MFNMIDADKSGQITFEELKAGLKRV-GANLKESEI----LDLMQAADVDNSGTIDYKEF 85
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 63.0 bits (154), Expect = 3e-13
Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVFSEQASR 73
++ E+ GL I QV + + G +++ +FL +
Sbjct: 74 LSSQEILD-----GLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKK 128
Query: 74 DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKL 133
+ FK +D D + I + +L+ R+ R ++ + + + +++E D++GDG++
Sbjct: 129 E-VCLIPFKFFDIDGNGKISVEELK---RIFGRDDIENPLIDKAIDSLLQEVDLNGDGEI 184
Query: 134 SFMEF 138
F EF
Sbjct: 185 DFHEF 189
Score = 28.7 bits (65), Expect = 0.53
Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 31/93 (33%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLL----TRSEL-----------------------SVQ 112
F D DN + ++ G++ + ++ ++
Sbjct: 62 IFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATID 121
Query: 113 ELTQVSEKVIEEA----DVDGDGKLSFMEFEHV 141
+ T + ++V D+DG+GK+S E + +
Sbjct: 122 KQTYLKKEVCLIPFKFFDIDGNGKISVEELKRI 154
Score = 26.8 bits (60), Expect = 2.7
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLS 65
I++ EL+ ++ + + + I + E +G G ++F EF+ ++S
Sbjct: 146 ISVEELKRIFGRDDI---ENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMS 194
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 63.4 bits (154), Expect = 3e-13
Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 13/130 (10%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE--------DGQGNLNFEEFLELLSVFS 68
+ E+ + L + + F + + +G+ +F EFLE +
Sbjct: 65 LCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLEF-RLML 123
Query: 69 EQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVD 128
++ F D + + + + + L V++ + +E D +
Sbjct: 124 CYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDP----AALFKELDKN 179
Query: 129 GDGKLSFMEF 138
G G ++F EF
Sbjct: 180 GTGSVTFDEF 189
Score = 40.6 bits (95), Expect = 5e-05
Identities = 8/64 (12%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEA-----DVDGDGKLS 134
FK +D + + ++ G + + + + ++++ +++ ++ G
Sbjct: 53 LFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSED 112
Query: 135 FMEF 138
F+EF
Sbjct: 113 FVEF 116
Score = 26.8 bits (59), Expect = 2.5
Identities = 11/101 (10%), Positives = 27/101 (26%), Gaps = 4/101 (3%)
Query: 45 QVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104
+ F ++ G L ++E + +V K + + + +
Sbjct: 55 KKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFV 114
Query: 105 TRSELSVQELTQVSEKVIEEA----DVDGDGKLSFMEFEHV 141
E + + D G+ + EF+
Sbjct: 115 EFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRA 155
Score = 25.6 bits (56), Expect = 5.9
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVFSEQASR 73
+ E + + + + +F E +G G++ F+EF S A
Sbjct: 147 VDEEEFKRAVPKLEAWGAKV----EDPAALFKELDKNGTGSVTFDEFAAWASAVKLDADG 202
Query: 74 DI 75
D
Sbjct: 203 DP 204
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 61.1 bits (149), Expect = 1e-12
Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 10/122 (8%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
IT EL+ G + + + D G +++ EF+ ++ +
Sbjct: 27 ITFDELKDGLKRVGSELMESEI--KDLMDAADIDKSGTIDYGEFIAATVHLNKLEREE-N 83
Query: 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFM 136
+ AF +D D YI + +++ + L + + +I+E D D DG++ +
Sbjct: 84 LVSAFSYFDKDGSGYITLDEIQ---QACKDFGLDDIHI----DDMIKEIDQDNDGQIDYG 136
Query: 137 EF 138
EF
Sbjct: 137 EF 138
Score = 44.1 bits (105), Expect = 2e-06
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
FK+ D DN I +L+ G++ + SEL E+ + +++ AD+D G + + EF
Sbjct: 15 LFKMIDTDNSGTITFDELKDGLKRV-GSELMESEI----KDLMDAADIDKSGTIDYGEFI 69
Query: 140 HVILR 144
+
Sbjct: 70 AATVH 74
Score = 33.0 bits (76), Expect = 0.017
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 50 DGQGNLNFEEFLELL------SVFSEQASRD-IKVFYAFKIYDFDNDQYI 92
D G +++ EF ++ + R + + A + D ++Q I
Sbjct: 128 DNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVI 177
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 62.4 bits (151), Expect = 1e-12
Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 20/145 (13%)
Query: 17 ITIAELRT------MYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQ 70
I+ AEL+ + K + + + + + ++F ++ G L+ + +L++
Sbjct: 121 ISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENF 180
Query: 71 ASRDIK-----------VFYAFKIYDFDNDQYIGMSDLEIGIRLL---TRSELSVQELTQ 116
+ F YD + +++ ++ + R +S +L +
Sbjct: 181 LLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDK 240
Query: 117 VSEKVIEEADVDGDGKLSFMEFEHV 141
E ++ D++ DGK+ E
Sbjct: 241 FRECLLTHCDMNKDGKIQKSELALC 265
Score = 53.9 bits (129), Expect = 2e-09
Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 21/147 (14%)
Query: 17 ITIAELRTMY--LWKGLFSTQE------NPFGQRICQVFSEDGQGNLNFEEFLELLSVFS 68
I EL + + K L + + + G L EE ++
Sbjct: 28 IEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQE 87
Query: 69 EQASRDIK----------VFYAFKIYDFDNDQYIGMSDLEIGIRLL---TRSELSVQELT 115
E + ++ YD D+ YI ++L+ ++ L + ++ +L
Sbjct: 88 ENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLD 147
Query: 116 QVSEKVIEEADVDGDGKLSFMEFEHVI 142
+ ++ +++ D + DG+L + ++
Sbjct: 148 EYTDAMMKIFDKNKDGRLDLNDLARIL 174
Score = 45.4 bits (107), Expect = 1e-06
Identities = 14/69 (20%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLL-----TRSELSVQELTQVSEKVIEEADVDGDGKLS 134
++ +D D++ YI +L+ R + + +++ + + Q+ + + D DG+L
Sbjct: 16 IWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQ 75
Query: 135 FMEFEHVIL 143
E ++IL
Sbjct: 76 IEELANMIL 84
Score = 34.7 bits (79), Expect = 0.007
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 45 QVFSEDGQGNLNFEEFLELLSVFSEQASRDI-------KVFYAFKIYDFDNDQYIG---- 93
+ + D G ++ E L Q + I KI+D + D +
Sbjct: 111 RKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDL 170
Query: 94 ---MSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142
++ E + S E + EK+ DV G L E + +
Sbjct: 171 ARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFV 222
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 60.9 bits (148), Expect = 1e-12
Identities = 19/141 (13%), Positives = 46/141 (32%), Gaps = 18/141 (12%)
Query: 17 ITIAELRTMY----LWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELL----- 64
I+ + + L + + Q +V + ++ EE
Sbjct: 31 ISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLL 90
Query: 65 -SVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIE 123
E+A I+ + D D D Y+ + + + ++ + +L+ +
Sbjct: 91 KMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGP-DLTDDKA----ITCFN 145
Query: 124 EADVDGDGKLSFMEFEHVILR 144
D + +G++S EF +
Sbjct: 146 TLDFNKNGQISRDEFLVTVND 166
Score = 44.3 bits (105), Expect = 2e-06
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 62 ELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTR----SELSVQELTQV 117
E+ R +K + D D +I D E+ + + S +E Q
Sbjct: 3 EITESERAYHLRKMK--TRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQE 60
Query: 118 SEKVIEEADVDGDGKLSFMEFEHVILR 144
+V ++ + ++S E
Sbjct: 61 FLRVADQLGLAPGVRISVEEAAVNATD 87
Score = 27.0 bits (60), Expect = 1.8
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 112 QELTQVSEKVIEEA----DVDGDGKLSFMEFEHVILRA 145
+ + ++ DV GDG +S ++E + +R
Sbjct: 6 ESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRI 43
Score = 26.2 bits (58), Expect = 3.5
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVF 67
+++ E + G T + F+ + G ++ +EFL ++ F
Sbjct: 119 VSLPEFKAFLQAVGPDLTDDK-----AITCFNTLDFNKNGQISRDEFLVTVNDF 167
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 62.5 bits (152), Expect = 1e-12
Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 14/128 (10%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
++ E R ++ G + + ED ++ F E++ L
Sbjct: 205 LSRKEFREHFVRLGFDKKSV---QDALFRYADEDESDDVGFSEYVHLGLCLLVLRI---- 257
Query: 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFM 136
+ DFD + +++ + E + ++ E DVD LS+
Sbjct: 258 ---LYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKF----EHQFSVVDVDDSKSLSYQ 310
Query: 137 EFEHVILR 144
EF ++L
Sbjct: 311 EFVMLVLL 318
Score = 57.9 bits (140), Expect = 7e-11
Identities = 13/122 (10%), Positives = 41/122 (33%), Gaps = 15/122 (12%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
+ +L+ + + +++ + D +G +++ + + A+
Sbjct: 139 FSFQDLKQVLAKYADTIPEGP--LKKLFVMVENDTKGRMSYITLVAV-------ANDLAA 189
Query: 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFM 136
+ F+ D +++ + + L + V + + AD D + F
Sbjct: 190 LVADFRKIDTNSNGTLSRKEFREHFVRLG------FDKKSVQDALFRYADEDESDDVGFS 243
Query: 137 EF 138
E+
Sbjct: 244 EY 245
Score = 31.7 bits (72), Expect = 0.060
Identities = 16/119 (13%), Positives = 30/119 (25%), Gaps = 32/119 (26%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSE 108
+D G +LS E+ + ++ F DL+ +
Sbjct: 101 DDASGYNRLRPSKPMLS---EEDTNILRQ--LFLSSAVSGSGKFSFQDLKQVLAKYA-DT 154
Query: 109 LSVQELTQVSEKV----------------------IEEA----DVDGDGKLSFMEFEHV 141
+ L ++ V + D + +G LS EF
Sbjct: 155 IPEGPLKKLFVMVENDTKGRMSYITLVAVANDLAALVADFRKIDTNSNGTLSRKEFREH 213
Score = 29.8 bits (67), Expect = 0.33
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 11/98 (11%)
Query: 47 FSEDGQGNLNFEEFLELLSVFS--EQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL 104
+ + Q + E E + + A+ ++ K + D G + L +L
Sbjct: 60 YDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDAS---GYNRLRPSKPML 116
Query: 105 TRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142
+ + L Q+ V G GK SF + + V+
Sbjct: 117 SEED--TNILRQLFLSS----AVSGSGKFSFQDLKQVL 148
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 60.2 bits (146), Expect = 4e-12
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 24/139 (17%)
Query: 17 ITIAELRTMY----LWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVFS- 68
+ + E+ Q + F + L E+++E VF+
Sbjct: 53 MEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAE 112
Query: 69 ---------EQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSE 119
E + + + + D D D + + +L+ ++ ++ +
Sbjct: 113 AERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELK---TMMKAFDVPQEAA----Y 165
Query: 120 KVIEEADVDGDGKLSFMEF 138
E+AD D GKL E
Sbjct: 166 TFFEKADTDKSGKLERTEL 184
Score = 30.2 bits (68), Expect = 0.20
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 14/107 (13%)
Query: 50 DGQGNLNFEEFLEL-------LSVFSEQASRDIKVFYA-FKIYDFDNDQYIGMSDLEIGI 101
D G + +E L ++ EQ + F + + D
Sbjct: 48 DSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLREDWVEAN 107
Query: 102 RLLTRSELSVQELTQ--VSEKVIEEA----DVDGDGKLSFMEFEHVI 142
R+ +E + + + + D DGDG + E + ++
Sbjct: 108 RVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMM 154
Score = 26.7 bits (59), Expect = 2.4
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 102 RLLTRSELSVQELTQVSEKVIEEA----DVDGDGKLSFMEFEHVILR 144
+ + + +V++L + + D+D DGK+ E + R
Sbjct: 18 SVGNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDR 64
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 58.8 bits (143), Expect = 4e-12
Identities = 21/112 (18%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 43 ICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFY-----AFKIYDFDNDQYIGMSDL 97
I S +L ++ L+ V ++ K AF+++D ++ + + DL
Sbjct: 46 INADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDL 105
Query: 98 -----EIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144
+G +L T +E+ +++++ +VD +G++ + +F +LR
Sbjct: 106 RYMLTGLGEKL-TDAEV---------DELLKGVEVDSNGEIDYKKFIEDVLR 147
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLL----TRSELSVQELTQVSEKVIEEADVDGDGKLSF 135
F ++D I L +R + T VQ++ ++ + L+
Sbjct: 9 IFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQL--VQDIIN------ADSSLRDASSLTL 60
Query: 136 MEF 138
+
Sbjct: 61 DQI 63
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 61.2 bits (149), Expect = 5e-12
Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 17/131 (12%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFG---------QRICQVFSEDGQGNLNFEEFLELLSVF 67
+ AEL Y Q+ ++ D G + + EF+ + ++
Sbjct: 352 LDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTV-AMD 410
Query: 68 SEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADV 127
+ ++ AF+++D DN I ++L + + + V+ E D
Sbjct: 411 RKTLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKS-------VLSEVDK 463
Query: 128 DGDGKLSFMEF 138
+ DG++ F EF
Sbjct: 464 NNDGEVDFDEF 474
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVS------EKVIEEADVDGDGKL 133
F D + D + ++L G + L R + + S ++V++ D D +G +
Sbjct: 340 IFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYI 399
Query: 134 SFMEF 138
+ EF
Sbjct: 400 EYSEF 404
Score = 26.2 bits (58), Expect = 5.5
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 90 QYIGMSDL-EIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPDS 148
Q+ G L + + + S E +++ + + D +GDG+L E
Sbjct: 309 QFQGTQKLAQAALLYMGSKLTSQDETKELTA-IFHKMDKNGDGQLDRAELIEGYKELMRM 367
Query: 149 S 149
Sbjct: 368 K 368
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 58.6 bits (143), Expect = 5e-12
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 15/95 (15%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDL-----EIGIRL 103
++G G +NF +FL +++ + ++ AFK++D D I +L E+G L
Sbjct: 53 KEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENL 112
Query: 104 LTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
T EL +++I+EAD DGDG++S EF
Sbjct: 113 -TDEEL---------QEMIDEADRDGDGEVSEQEF 137
Score = 45.5 bits (109), Expect = 4e-07
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
AF ++D D I + +L++ +R L E +E+ +K+I E D +G GK++F +F
Sbjct: 11 AFDLFDADGTGTIDVKELKVAMRAL-GFEPKKEEI----KKMISEIDKEGTGKMNFGDFL 65
Query: 140 HVILR 144
V+ +
Sbjct: 66 TVMTQ 70
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 58.7 bits (143), Expect = 6e-12
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDL-----EIGIRL 103
+G+ + +++F ++ + ++ AF+++D D+ I + +L E+G L
Sbjct: 70 SEGRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETL 129
Query: 104 LTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
T EL +IEE D+DGDG+++ EF
Sbjct: 130 -TDEEL---------RAMIEEFDLDGDGEINENEF 154
Score = 45.2 bits (108), Expect = 6e-07
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
AF ++D +ND ++ +L++ ++ L EL +E+ +I+E D +G + + +F
Sbjct: 28 AFSLFDMNNDGFLDYHELKVAMKAL-GFELPKREI----LDLIDEYDSEGRHLMKYDDFY 82
Query: 140 HVILR 144
V+
Sbjct: 83 IVMGE 87
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 60.7 bits (147), Expect = 8e-12
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 15/103 (14%)
Query: 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDL--- 97
Q + DG G ++F EFL +++ + + ++ AF+++D D + YI ++L
Sbjct: 351 QDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHV 410
Query: 98 --EIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
+G +L T E+ +++I EAD+DGDG++++ EF
Sbjct: 411 MTNLGEKL-TDEEV---------DEMIREADIDGDGQVNYEEF 443
Score = 48.7 bits (116), Expect = 1e-07
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 24/109 (22%)
Query: 49 EDGQGNLNFEEFLELLS---------VFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEI 99
++F+E +L +E+ + K AF ++D D D I +L
Sbjct: 279 RIELKGIDFKEDGNILGHKLEYNTRDQLTEEQIAEFK--EAFSLFDKDGDGTITTKELGT 336
Query: 100 GIRLL----TRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144
+R L T +EL + +I E D DG+G + F EF ++ R
Sbjct: 337 VMRSLGQNPTEAEL---------QDMINEVDADGNGTIDFPEFLTMMAR 376
Score = 26.0 bits (57), Expect = 5.5
Identities = 7/16 (43%), Positives = 14/16 (87%)
Query: 50 DGQGNLNFEEFLELLS 65
DG G +N+EEF+++++
Sbjct: 433 DGDGQVNYEEFVQMMT 448
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 58.3 bits (142), Expect = 8e-12
Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIKV----FYAFKIYDFDNDQYIGMSDLEIGIRLL 104
+ G+++F++F+EL+ + D+ AF+ +D + D I S+L +R L
Sbjct: 58 MNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRAL 117
Query: 105 TRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
++ +++ E++I + D++GDG++ F EF
Sbjct: 118 LGHQVGHRDI----EEIIRDVDLNGDGRVDFEEF 147
Score = 45.2 bits (108), Expect = 6e-07
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
AF+ +D D D YI DL +R + + EL ++ ++ +++ G + F +F
Sbjct: 16 AFREFDKDKDGYINCRDLGNCMRTM-GYMPTEMEL----IELSQQINMNLGGHVDFDDFV 70
Query: 140 HVILR 144
++
Sbjct: 71 ELMGP 75
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 58.4 bits (142), Expect = 1e-11
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDL-----EIGIRL 103
+DG G ++FEEFL +++ + ++ AF+++D DN I + DL E+G L
Sbjct: 75 KDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENL 134
Query: 104 LTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
T EL +++I EAD + D ++ EF
Sbjct: 135 -TEEEL---------QEMIAEADRNDDNEIDEDEF 159
Score = 45.3 bits (108), Expect = 8e-07
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
AF ++D D I +L++ +R L E +E+ +K+I E D DG G + F EF
Sbjct: 33 AFDLFDTDGSGTIDAKELKVAMRAL-GFEPKKEEI----KKMISEIDKDGSGTIDFEEFL 87
Query: 140 HVILR 144
++
Sbjct: 88 TMMTA 92
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 59.7 bits (145), Expect = 2e-11
Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFG------------QRICQVFSEDGQGNLNFEEFLELL 64
+ EL Y ++ + + DG G++ + EF+
Sbjct: 348 LDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIAS- 406
Query: 65 SVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEE 124
++ ++ AFK++D D I +L +L ++++ S+Q + E +IE+
Sbjct: 407 AIDRTILLSRERMERAFKMFDKDGSGKISTKELF---KLFSQADSSIQM--EELESIIEQ 461
Query: 125 ADVDGDGKLSFMEF 138
D + DG++ F EF
Sbjct: 462 VDNNKDGEVDFNEF 475
Score = 34.3 bits (79), Expect = 0.009
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVS---------EKVIEEADVDGD 130
F+ D +ND + +L G R + + + ++ D+DG
Sbjct: 336 IFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGS 395
Query: 131 GKLSFMEF 138
G + + EF
Sbjct: 396 GSIEYSEF 403
Score = 27.0 bits (60), Expect = 2.6
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVFSEQ 70
I+ EL + + + + + + + G ++F EF+E+L F
Sbjct: 434 ISTKELFKL-----FSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNFVRN 485
Score = 26.2 bits (58), Expect = 5.8
Identities = 24/116 (20%), Positives = 36/116 (31%), Gaps = 26/116 (22%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYA-------------FKIYDFDNDQYIGMSD 96
+ G L+ +E + F D + D D I S
Sbjct: 343 NNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYS- 401
Query: 97 LEIGIRLLTRSELSVQELTQVSEKVIEEA----DVDGDGKLSFMEFEHVILRAPDS 148
E + R+ L S + +E A D DG GK+S E + +A S
Sbjct: 402 -EFIASAIDRTILL-------SRERMERAFKMFDKDGSGKISTKELFKLFSQADSS 449
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 58.3 bits (141), Expect = 2e-11
Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 23/140 (16%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQG-----NLNFEEFLELLSVF- 67
I++ E+ + + P + + E G G ++ ++E
Sbjct: 33 ISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLA 92
Query: 68 ---------SEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVS 118
+E I F I D D + I + + + + S ++
Sbjct: 93 TDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGI-IQSSEDC---- 147
Query: 119 EKVIEEADVDGDGKLSFMEF 138
E+ D+D G+L E
Sbjct: 148 EETFRVCDIDESGQLDVDEM 167
Score = 30.2 bits (68), Expect = 0.20
Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 13/68 (19%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGI-RLLTRS---ELSVQELTQVSEKVIEEADVDGDG---- 131
F D +++ I + ++ ++ + + K EA G G
Sbjct: 21 MFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKR----HKDAVEAFFGGAGMKYG 76
Query: 132 -KLSFMEF 138
+ + +
Sbjct: 77 VETDWPAY 84
Score = 27.8 bits (62), Expect = 1.2
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVF 67
IT+ E + G+ + E+ + F D G L+ +E F
Sbjct: 126 ITLDEWKAYTKAAGIIQSSED-----CEETFRVCDIDESGQLDVDEMTRQHLGF 174
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 58.2 bits (141), Expect = 2e-11
Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 33/151 (21%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE--------DGQGNLNFEEFLELLSVFS 68
IT+ E+ + + P + QV E + + F +FL+ +
Sbjct: 37 ITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLA 96
Query: 69 ----------EQASRDIKVFYAFKIYDFDNDQYIGMSDL-----EIGIRLLTRSELSVQE 113
E F I+D D I + + GI ++ +
Sbjct: 97 TSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISP-SQEDC---- 151
Query: 114 LTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144
E D+D G L E L
Sbjct: 152 -----EATFRHCDLDNAGDLDVDEMTRQHLG 177
Score = 28.6 bits (64), Expect = 0.63
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 13/75 (17%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGI-RLLTRS---ELSVQELTQVSEKVIEEADVDGDG---- 131
F D + + I + ++ + + +V EA G G
Sbjct: 25 MFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKR----HQVCVEAFFRGCGMEYG 80
Query: 132 -KLSFMEFEHVILRA 145
+++F +F +
Sbjct: 81 KEIAFPQFLDGWKQL 95
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 57.9 bits (141), Expect = 2e-11
Identities = 28/100 (28%), Positives = 58/100 (58%), Gaps = 9/100 (9%)
Query: 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIG 100
Q + DG G ++F EFL +++ + + ++ AF+++D D + YI ++L
Sbjct: 50 QDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELR-- 107
Query: 101 IRLLTRS--ELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
++T +L+ +E+ +++I EAD+DGDG++++ EF
Sbjct: 108 -HVMTNLGEKLTDEEV----DEMIREADIDGDGQVNYEEF 142
Score = 44.4 bits (106), Expect = 1e-06
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
AF ++D D D I +L +R L + EL + +I E D DG+G + F EF
Sbjct: 16 AFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAEL----QDMINEVDADGNGTIDFPEFL 70
Query: 140 HVILR 144
++ R
Sbjct: 71 TMMAR 75
Score = 31.7 bits (73), Expect = 0.049
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 50 DGQGNLNFEEFLELLSVF-SEQASRDIK--VFYAFKIYDFDNDQYI 92
DG G +N+EEF+++++ + K + + +
Sbjct: 132 DGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFS 177
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 57.2 bits (139), Expect = 2e-11
Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 14/128 (10%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
I +LR + G + N + + ++ G +NF FL + + A +
Sbjct: 42 IDKDDLRETFAAMG----RLNVKNEEL-DAMIKEASGPINFTVFLTMFGEKLKGADPEDV 96
Query: 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS--ELSVQELTQVSEKVIEEADVDGDGKLS 134
+ AFK+ D D I S LE LLT + +E+ + + D G +
Sbjct: 97 IMGAFKVLDPDGKGSIKKSFLE---ELLTTGGGRFTPEEI----KNMWAAFPPDVAGNVD 149
Query: 135 FMEFEHVI 142
+ +VI
Sbjct: 150 YKNICYVI 157
Score = 37.6 bits (88), Expect = 4e-04
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
AF + D + D I DL + R V + ++ + G ++F F
Sbjct: 30 AFTVIDQNADGIIDKDDLRETFAAMGRLN--------VKNEELDAMIKEASGPINFTVF 80
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 56.7 bits (138), Expect = 2e-11
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
I +L M G T E + + G +NF FL + +
Sbjct: 24 IDKEDLHDMLASMGKNPTDE------YLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDV 77
Query: 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS--ELSVQELTQVSEKVIEEADVDGDGKLS 134
+ AF +D + +I L LLT + +E+ +++ EA +D G +
Sbjct: 78 IRNAFACFDEEASGFIHEDHLR---ELLTTMGDRFTDEEV----DEMYREAPIDKKGNFN 130
Query: 135 FMEFEHVI 142
++EF ++
Sbjct: 131 YVEFTRIL 138
Score = 32.8 bits (76), Expect = 0.015
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
AF + D + D +I DL + + ++ +++ +E + G ++F F
Sbjct: 12 AFNMIDQNRDGFIDKEDLHDMLASMGKN---------PTDEYLEGMMSEAPGPINFTMF 61
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 55.3 bits (134), Expect = 4e-11
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS-- 107
+G+ N ++F L+ + + A+ D+K FK D D +I +L+ ++
Sbjct: 20 KAEGSFNHKKFFALVGLKAMSAN-DVKK--VFKAIDADASGFIEEEELKFVLKSFAADGR 76
Query: 108 ELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
+L+ E + ++ AD DGDGK+ EF
Sbjct: 77 DLTDAET----KAFLKAADKDGDGKIGIDEF 103
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 56.3 bits (137), Expect = 4e-11
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 15/109 (13%)
Query: 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDL--- 97
Q + DG G ++F EFL L++ ++ + ++ AFK++D D + I ++L
Sbjct: 49 QDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHV 108
Query: 98 --EIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144
+G +L T E+ +++I EAD+DGDG +++ EF +++
Sbjct: 109 MTNLGEKL-TDDEV---------DEMIREADIDGDGHINYEEFVRMMVS 147
Score = 44.0 bits (105), Expect = 1e-06
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLL----TRSELSVQELTQVSEKVIEEADVDGDGKLSF 135
AF ++D D D I +L +R L T +EL + +I E D DG+G + F
Sbjct: 15 AFALFDKDGDGTITTKELGTVMRSLGQNPTEAEL---------QDMINEVDADGNGTIDF 65
Query: 136 MEFEHVILR 144
EF ++ R
Sbjct: 66 PEFLSLMAR 74
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 55.3 bits (134), Expect = 5e-11
Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS-- 107
+ + N++ F + +++ DIK AF + D D +I +L++ +++ +
Sbjct: 20 EAADSFNYKAFFAK-VGLTAKSADDIKK--AFFVIDQDKSGFIEEDELKLFLQVFSAGAR 76
Query: 108 ELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
L+ E + ++ D DGDG + E+
Sbjct: 77 ALTDAET----KAFLKAGDSDGDGAIGVDEW 103
Score = 25.7 bits (57), Expect = 4.0
Identities = 3/35 (8%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 116 QVSEKVIEEA--DVDGDGKLSFMEFEHVILRAPDS 148
+++ + A + ++ F + S
Sbjct: 6 ILADADVAAALKACEAADSFNYKAFFAKVGLTAKS 40
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 56.0 bits (136), Expect = 7e-11
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 49 EDGQGNLNFEEFLELLSVF-SEQASRDIK--VFYAFKIYDFDNDQYIGMSDLEIGIRLLT 105
EDG G ++FEEFL ++ E A + + F+I+D + D +I + +L +L
Sbjct: 67 EDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELG---EILR 123
Query: 106 RS--ELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
+ ++ +++ E +++++D + DG++ F EF
Sbjct: 124 ATGEHVTEEDI----EDLMKDSDKNNDGRIDFDEF 154
Score = 45.6 bits (109), Expect = 5e-07
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
AF ++D D I +L +R+L + +EL + +IEE D DG G + F EF
Sbjct: 25 AFDMFDADGGGDISTKELGTVMRML-GQNPTKEEL----DAIIEEVDEDGSGTIDFEEFL 79
Query: 140 HVILR 144
+++R
Sbjct: 80 VMMVR 84
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 54.5 bits (132), Expect = 8e-11
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSEL 109
G +++ F L+ + D +V F+I D D +I +L+ +L
Sbjct: 19 KDPGTFDYKRFFHLVG---LKGKTDAQVKEVFEILDKDQSGFIEEEELK---GVLKGFSA 72
Query: 110 SVQELT-QVSEKVIEEADVDGDGKLSFMEFEHVILRA 145
++L ++ ++ D D DGK+ EF ++ +A
Sbjct: 73 HGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVAQA 109
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 54.6 bits (132), Expect = 9e-11
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS-- 107
++F + S+ ++ +K F+ D D Y+ +L+ ++
Sbjct: 19 QDPDTFEPQKFFQTSG-LSKMSASQVKD--IFRFIDNDQSGYLDGDELKYFLQKFQSDAR 75
Query: 108 ELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
EL+ E + +++ AD DGDGK+ EF
Sbjct: 76 ELTESET----KSLMDAADNDGDGKIGADEF 102
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 55.6 bits (135), Expect = 9e-11
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIK----VFYAFKIYDFDNDQYIGMSDLEIGIRLL 104
G G+++F+ F + + F + + + AF++YD + + YI + + L
Sbjct: 61 PFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAEL 120
Query: 105 TRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
LS ++L + +I+E D DG G + F EF
Sbjct: 121 -DETLSSEDL----DAMIDEIDADGSGTVDFEEF 149
Score = 42.9 bits (102), Expect = 5e-06
Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 80 AFKIYD-FDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
AF+ ++ + + + I + +L + + + ++I+E D G+G + F F
Sbjct: 18 AFRDFETPEGSGRVSTDQIGIILEVL-GIQQTKSTI----RQLIDEFDPFGNGDIDFDSF 72
Query: 139 EHVILR 144
+ + R
Sbjct: 73 KIIGAR 78
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 55.9 bits (135), Expect = 9e-11
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 14/96 (14%)
Query: 50 DGQGNLNFEEFLELLSVF-----SEQASRDIKVF--YAFKIYDFDNDQYIGMSDLEIGIR 102
G+L E+F+ + +R + + D + D I +
Sbjct: 70 GSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFA---A 126
Query: 103 LLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
LT +S E + + D +G+G+LS E
Sbjct: 127 WLTALGMSKAEA----AEAFNQVDTNGNGELSLDEL 158
Score = 44.4 bits (105), Expect = 2e-06
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 68 SEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTR------SELSVQEL----TQV 117
+ AS +K F +DFD + + +D E + + VQ L +
Sbjct: 2 TAIASDRLK--KRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGL 59
Query: 118 SEKVIEEADVDGDGKLSFMEF 138
+ + +EA V DG L+ +F
Sbjct: 60 FDYLAKEAGVGSDGSLTEEQF 80
Score = 29.0 bits (65), Expect = 0.47
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 26/124 (20%)
Query: 41 QRICQVFSE---DGQGNLNFEEFLELLSVF---------SEQASRDIKVFYAF-----KI 83
R+ + F DG G L +F + + + F K
Sbjct: 7 DRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKE 66
Query: 84 YDFDNDQYIGMSDLE------IGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFME 137
+D + E + + L V + ++ D + DG+++ E
Sbjct: 67 AGVGSDGSL---TEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADE 123
Query: 138 FEHV 141
F
Sbjct: 124 FAAW 127
Score = 26.3 bits (58), Expect = 3.7
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELL 64
I E L ++ + F++ +G G L+ +E L +
Sbjct: 119 INADEFAAWL--TALGMSKAE-----AAEAFNQVDTNGNGELSLDELLTAV 162
Score = 25.9 bits (57), Expect = 5.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 115 TQVSEKVIEEA----DVDGDGKLSFMEFEHVILR 144
T ++ +++ D DG+G L +FE
Sbjct: 2 TAIASDRLKKRFDRWDFDGNGALERADFEKEAQH 35
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 56.2 bits (136), Expect = 1e-10
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 6/126 (4%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
+ E R GL Q + +C+ + +G G L+ EEFL L QA +
Sbjct: 54 LDADEFRQGLAKLGLVLDQAE--AEGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREAV- 110
Query: 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELT--QVSEKVIEEAD-VDGDGKL 133
+ AF D D + + DL ++ E T +V + ++ D + DG++
Sbjct: 111 IAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQV 170
Query: 134 SFMEFE 139
+ EF+
Sbjct: 171 TLAEFQ 176
Score = 44.6 bits (106), Expect = 2e-06
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 62 ELLSVFSEQASRDIKVFY-AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEK 120
+ LS + I+ F+ D D + + + G+ L L E E
Sbjct: 27 QCLSRGASG----IQGLARFFRQLDRDGSRSLDADEFRQGLAKL-GLVLDQAEA----EG 77
Query: 121 VIEEADVDGDGKLSFMEFEHVILR 144
V + D +G G L EF +
Sbjct: 78 VCRKWDRNGSGTLDLEEFLRALRP 101
Score = 31.2 bits (71), Expect = 0.092
Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 16/105 (15%)
Query: 42 RICQVFSEDGQGNLNFEEFLELLSVFSEQASR-DIKVFYAFKIYDFDNDQYIGMSDLEIG 100
R + DG +L+ +EF + L+ + + + + +D + + + +
Sbjct: 41 RFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGV--CRKWDRNGSGTLDLEEFLRA 98
Query: 101 IRLLTRSELSVQELTQVSEKVIEEA----DVDGDGKLSFMEFEHV 141
+R ++Q E VI A D GDG ++ + V
Sbjct: 99 LR---------PPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGV 134
Score = 26.5 bits (59), Expect = 2.7
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 17 ITIAELRTMYLWKGLFSTQ------ENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQ 70
+T+ +LR +Y + + + + + S + G + EF + S S
Sbjct: 126 VTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSAS 185
Query: 71 ASRD 74
+ D
Sbjct: 186 MNTD 189
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 54.2 bits (131), Expect = 1e-10
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS-- 107
+ + ++F ++ + + +S +K F+I D D +I +L+ ++
Sbjct: 19 QAPDSFSPKKFFQISGMSKKSSS-QLKE--IFRILDNDQSGFIEEDELKYFLQRFESGAR 75
Query: 108 ELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
L+ E + + AD DGDGK+ EF
Sbjct: 76 VLTASET----KTFLAAADHDGDGKIGAEEF 102
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 54.2 bits (131), Expect = 1e-10
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSEL 109
+ N++ F + + S+ IK F I D D +I +L+ L
Sbjct: 20 QAADSFNYKSFFSTVGLSSKTPD-QIKK--VFGILDQDKSGFIEEEELQ---LFLKNFSS 73
Query: 110 SVQELT-QVSEKVIEEADVDGDGKLSFMEF 138
S + LT ++ + D DGDGK+ EF
Sbjct: 74 SARVLTSAETKAFLAAGDTDGDGKIGVEEF 103
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 55.5 bits (134), Expect = 1e-10
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 50 DGQGNLNFEEFLEL----LSVFSEQASRDIKVF--YAFKIYDFDNDQYIGMSDLEIGIRL 103
DG + EEF+ L ++ + + F A + D D D + ++D R
Sbjct: 67 DGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTA---RA 123
Query: 104 LTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144
LT + + D DGDGK+ E R
Sbjct: 124 LTAFGVPEDLA----RQAAAALDTDGDGKVGETEIVPAFAR 160
Score = 42.8 bits (101), Expect = 6e-06
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRS----------ELSVQELTQVSEKVIEEADVDG 129
F +D D + +I SD + + + + + + AD DG
Sbjct: 9 RFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDG 68
Query: 130 DGKLSFMEF 138
D +++ EF
Sbjct: 69 DQRITREEF 77
Score = 26.2 bits (58), Expect = 3.8
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 10/54 (18%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVF 67
+T+A+ ++ Q + DG G + E + + +
Sbjct: 115 VTVADTARAL--TAFGVPEDL-----ARQAAAALDTDGDGKVGETEIVPAFARY 161
Score = 25.5 bits (56), Expect = 6.9
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 126 DVDGDGKLSFMEFEHVILR 144
D DG+G + +F
Sbjct: 14 DQDGNGHIDRSDFSGAAKA 32
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 55.5 bits (134), Expect = 2e-10
Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 20/135 (14%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---------DGQGNLNFEEFLELLS-- 65
IT + +M S + + + + G ++ F+ +
Sbjct: 23 ITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEM 82
Query: 66 VFSEQASRDIKVF--YAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIE 123
V + +A ++ F+ D + D I + L +
Sbjct: 83 VKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYG---IFFGMLGLDKTMA----PASFD 135
Query: 124 EADVDGDGKLSFMEF 138
D + DG LS EF
Sbjct: 136 AIDTNNDGLLSLEEF 150
Score = 35.1 bits (81), Expect = 0.004
Identities = 11/115 (9%), Positives = 36/115 (31%), Gaps = 13/115 (11%)
Query: 41 QRICQVFSE---DGQGNLNFEEFLELLSVFSEQASRD----------IKVFYAFKIYDFD 87
Q++ F+ D G + +F + F++++ + + +
Sbjct: 6 QKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA 65
Query: 88 NDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142
+ I + ++ + ++ + + D + D +S E+
Sbjct: 66 GGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFF 120
Score = 26.6 bits (59), Expect = 2.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 126 DVDGDGKLSFMEFEHVILR 144
D D DG ++ M+FE + R
Sbjct: 16 DFDKDGAITRMDFESMAER 34
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 53.8 bits (130), Expect = 2e-10
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTR--S 107
+ + ++F +++ + + A D+K F I D D +I +L ++ +
Sbjct: 19 TAADSFDHKKFFQMVGLKKKSAD-DVKK--VFHILDKDKSGFIEEDELGSILKGFSSDAR 75
Query: 108 ELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
+LS +E + ++ D DGDGK+ EF
Sbjct: 76 DLSAKET----KTLMAAGDKDGDGKIGVEEF 102
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 53.3 bits (129), Expect = 3e-10
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSEL 109
+ +EF + + S+ D+K AF + D D +I +L+ L
Sbjct: 19 SAADSFKHKEFFAKVGLASKSLD-DVKK--AFYVIDQDKSGFIEEDELK---LFLQNFSP 72
Query: 110 SVQELT-QVSEKVIEEADVDGDGKLSFMEF 138
S + LT ++ + + D DGDG + EF
Sbjct: 73 SARALTDAETKAFLADGDKDGDGMIGVDEF 102
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 54.5 bits (132), Expect = 3e-10
Identities = 22/95 (23%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIK---VFYAFKIYDFDNDQYIGMSDLEIGIRLLT 105
EDG G ++F+EFL ++ + S+ + F+++D + D YI + +L+ +L
Sbjct: 66 EDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELK---IMLQ 122
Query: 106 RS--ELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
+ ++ ++ E+++++ D + DG++ + EF
Sbjct: 123 ATGETITEDDI----EELMKDGDKNNDGRIDYDEF 153
Score = 40.6 bits (96), Expect = 3e-05
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 80 AFKIYDFD-NDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
AF I+ D I +L +R+L + +EL +++I+E D DG G + F EF
Sbjct: 23 AFDIFVLGAEDGSISTKELGKVMRML-GQNPTPEEL----QEMIDEVDEDGSGTVDFDEF 77
Query: 139 EHVILR 144
+++R
Sbjct: 78 LVMMVR 83
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 55.3 bits (133), Expect = 4e-10
Identities = 21/143 (14%), Positives = 52/143 (36%), Gaps = 15/143 (10%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFG----QRICQVFSEDGQGNLNFEEFLELLS------- 65
+ EL+ + + + + + G + E +L
Sbjct: 33 LEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLL 92
Query: 66 VFSEQASRDIKVFY-AFKIYDFDNDQYIGMSDLEIGIRLL---TRSELSVQELTQVSEKV 121
+F Q + + F ++ YD D+ +I +L+ ++ L + +L + ++ +
Sbjct: 93 LFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLM 152
Query: 122 IEEADVDGDGKLSFMEFEHVILR 144
++ D + DGKL E ++
Sbjct: 153 LKLFDSNNDGKLELTEMARLLPV 175
Score = 52.6 bits (126), Expect = 4e-09
Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 19/146 (13%)
Query: 17 ITIAELRTMY------LWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSV---- 66
I EL+ K + T+ + + ++F + G L E LL V
Sbjct: 120 IETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENF 179
Query: 67 ---FSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL---TRSELSVQELTQVSEK 120
F + AF++YD D + YI ++L+ ++ L + EL + ++ +
Sbjct: 180 LLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKN 239
Query: 121 VIEEADVDGDGKLSFMEFEHVILRAP 146
++ + GKL + ++
Sbjct: 240 IM---ALSDGGKLYRTDLALILSAGD 262
Score = 43.3 bits (102), Expect = 7e-06
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIR-LLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
+ +D D Y+ +L+ I+ LL + + EL+ + +++ DGK+ +E
Sbjct: 21 IWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVEL 80
Query: 139 EHVILRAPD 147
HV+ +
Sbjct: 81 AHVLPTEEN 89
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 54.2 bits (131), Expect = 4e-10
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 21/135 (15%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
++ E+ T+ G+ RI Q + +GN+ + EF+ +
Sbjct: 56 LSHREIYTVLASVGIKKWDI----NRILQALDINDRGNITYTEFMAGCY--RWKNIESTF 109
Query: 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDG----- 131
+ AF D D D YI SD+ L+ L ++ + G
Sbjct: 110 LKAAFNKIDKDEDGYISKSDIV---SLVHDKVLDNNDI----DNFFLSVHSIKKGIPREH 162
Query: 132 ---KLSFMEFEHVIL 143
K+SF EF+ +L
Sbjct: 163 IINKISFQEFKDYML 177
Score = 41.5 bits (98), Expect = 2e-05
Identities = 6/59 (10%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F D +++ + ++ + + + + + ++ D++ G +++ EF
Sbjct: 44 LFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRI-------LQALDINDRGNITYTEF 95
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 52.9 bits (128), Expect = 8e-10
Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
++I EL + L S +NP + + + + F + + + K
Sbjct: 22 VSIEELGSA-----LRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKPIKTPTEQSK 76
Query: 77 VFY-AFKIYDFDNDQYIGMSDLEIGIRLLTRS--ELSVQELTQVSEKVIEEADVDGDGKL 133
AF+ D + + I ++L +LL L+ E+ E++++E V GDG +
Sbjct: 77 EMLDAFRALDKEGNGTIQEAELR---QLLLNLGDALTSSEV----EELMKEVSVSGDGAI 129
Query: 134 SFMEFEHVIL 143
++ F +++
Sbjct: 130 NYESFVDMLV 139
Score = 32.5 bits (75), Expect = 0.020
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLL----TRSELSVQELTQVSEKVIEEADVDGDGKLSF 135
F+I+D DND + + +L +R L T +EL + + + +F
Sbjct: 10 CFQIFDKDNDGKVSIEELGSALRSLGKNPTNAEL---------NTIKGQLNAKEFDLATF 60
Query: 136 MEFEHVILRAPDSS 149
++ P
Sbjct: 61 KTVYRKPIKTPTEQ 74
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 53.5 bits (129), Expect = 9e-10
Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 16/101 (15%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDL-----EIGIRL 103
+ G +NF FL + + + AF ++D + D L G +
Sbjct: 100 AEAPGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKF 158
Query: 104 LTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144
++ E+ ++ + EA +DG+G + +F ++ +
Sbjct: 159 -SQDEV---------DQALSEAPIDGNGLIDIKKFAQILTK 189
Score = 32.3 bits (74), Expect = 0.032
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
AF++ D D D +I +D+ L R +E+ ++ + G ++F F
Sbjct: 62 AFQLIDQDKDGFISKNDIRATFDSLGRL---------CTEQELDSMVAEAPGPINFTMF 111
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 52.1 bits (126), Expect = 1e-09
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 12/124 (9%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
IT L+T+ G+ + G G + F EFL ++ +Q + +
Sbjct: 23 ITKEGLQTVLKQFGVRVEPAAF--NEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDI 80
Query: 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS--ELSVQELTQVSEKVIEEADVDGDGKLS 134
+ AF+ +D + YI + L+ L L E + + + + G++
Sbjct: 81 LRQAFRTFDPEGTGYIPKAALQ---DALLNLGDRLKPHEF----AEFLGITETE-KGQIR 132
Query: 135 FMEF 138
+ F
Sbjct: 133 YDNF 136
Score = 44.0 bits (105), Expect = 1e-06
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
AF+++D + +I L+ ++ + ++ EAD G+GK+ F EF
Sbjct: 11 AFELFDSERTGFITKEGLQTVLKQF-GVRVEPAAF----NEMFNEADATGNGKIQFPEF 64
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 52.2 bits (126), Expect = 2e-09
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIK--VFYAFKIYDFDNDQYIGMSDLEIGIRLLTR 106
+ G+ EE L + S + + AFK +D + I +++ +L
Sbjct: 57 KMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIR---NVLKM 113
Query: 107 S--ELSVQELTQVSEKVIEEADV--DGDGKLSFMEFEHVILRAP 146
++ + + D+ D DG + + + ++ P
Sbjct: 114 LGERITEDQC----NDIFTFCDIREDIDGNIKYEDLMKKVMAGP 153
Score = 31.0 bits (71), Expect = 0.072
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 16/71 (22%)
Query: 80 AFKIYDF--DNDQYIGMSDLEIGIRLL----TRSELSVQELTQVSEKVIEEADVDGDGKL 133
F ++DF D + + + +R L T +++ + G+
Sbjct: 14 VFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQV---------HQHGGT-KKMGEKAY 63
Query: 134 SFMEFEHVILR 144
E +
Sbjct: 64 KLEEILPIYEE 74
Score = 24.8 bits (55), Expect = 8.7
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 48 SEDGQGNLNFEEFLELL 64
ED GN+ +E+ ++ +
Sbjct: 133 REDIDGNIKYEDLMKKV 149
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 52.5 bits (126), Expect = 2e-09
Identities = 10/112 (8%), Positives = 32/112 (28%), Gaps = 15/112 (13%)
Query: 39 FGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRD--------IKVFYAFKIYDFDNDQ 90
+ + E+ + EE+L++ + + + + + F + D D
Sbjct: 65 IWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDN 124
Query: 91 YIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142
I + + + + + + G ++ F +
Sbjct: 125 IIDKHEYS---TVYMSYGIPKSDC----DAAFDTLSDGGKTMVTREIFARLW 169
Score = 39.8 bits (93), Expect = 9e-05
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 69 EQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS----------ELSVQELTQVS 118
Q ++ ++VF F YD ++D I D E+ I+ + + L +
Sbjct: 9 FQRNKILRVFNTF--YDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIW 66
Query: 119 EKVIEEADVDGDGKLSFMEF 138
+ + + AD + D +++ E+
Sbjct: 67 DGLRKYADENEDEQVTKEEW 86
Score = 27.5 bits (61), Expect = 1.6
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 109 LSVQELTQVSEKVIEEA-----DVDGDGKLSFMEFEHVILR 144
++ +L+ I D + DG + + +FE I +
Sbjct: 1 MAAHQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKK 41
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 51.8 bits (124), Expect = 2e-09
Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 9/108 (8%)
Query: 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIG 100
+ + + L+ ++ KV + +D + + I + L+
Sbjct: 18 AQQEERLEGINKQFLDDPKYSN--DEDLPSKLEAFKV--KYMEFDLNGNGDIDIMSLKRM 73
Query: 101 IRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILRAPDS 148
+ L + EL +++I E + S+ +F ++L +
Sbjct: 74 LEKL-GVPKTHLEL----KRLIREVSSGSEETFSYSDFLRMMLGKRSA 116
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 51.7 bits (125), Expect = 2e-09
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDL--- 97
+ DG + F EFL L+S + + ++ AFK++D + D I ++L
Sbjct: 50 ADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHV 109
Query: 98 --EIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
IG + LT +E+ ++++ E DG G+++ +F
Sbjct: 110 LTSIGEK-LTDAEV---------DEMLREVS-DGSGEINIKQF 141
Score = 43.6 bits (104), Expect = 2e-06
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
AF ++D DN I S+L +R L S E+ ++ E DVDG+ + F EF
Sbjct: 16 AFALFDKDNSGSISASELATVMRSL-GLSPSEAEV----ADLMNEIDVDGNHAIEFSEFL 70
Query: 140 HVILR 144
++ R
Sbjct: 71 ALMSR 75
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 51.4 bits (124), Expect = 3e-09
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 49 EDGQGNLNFEEFLELLSVF--SEQASR-DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLT 105
+ G+ +L FEEFL EQ + D AFK +D + +I ++L +LT
Sbjct: 57 KMGEKSLPFEEFLPAYEGLMDCEQGTFADYM--EAFKTFDREGQGFISGAELR---HVLT 111
Query: 106 RS--ELSVQELTQVSEKVIEEADV--DGDGKLSFMEFEHVILRAP 146
LS +++ +++I+ D+ D +G + + +F ++ P
Sbjct: 112 ALGERLSDEDV----DEIIKLTDLQEDLEGNVKYEDFVKKVMAGP 152
Score = 33.7 bits (78), Expect = 0.009
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 16/65 (24%)
Query: 80 AFKIYDF--DNDQYIGMSDLEIGIRLL----TRSELSVQELTQVSEKVIEEADVDGDGKL 133
F+++DF D + L R L ++ + G+ L
Sbjct: 14 VFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV----------FAVGGTHKMGEKSL 63
Query: 134 SFMEF 138
F EF
Sbjct: 64 PFEEF 68
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 50.0 bits (120), Expect = 4e-09
Identities = 25/92 (27%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 56 NFEEFLELLSVFSEQASR-DIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTR--SELSVQ 112
+ E L S+ + S +I+ AF++ D D + YI ++L ++T +L+ +
Sbjct: 11 SSGENLYFQSLMKDTDSEEEIRE--AFRVEDKDGNGYISAAELR---HVMTNLGEKLTDE 65
Query: 113 ELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144
E+ +++I EAD+DGDG++++ EF ++
Sbjct: 66 EV----DEMIREADIDGDGQVNYEEFVQMMTA 93
Score = 25.7 bits (57), Expect = 2.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLS 65
I+ AELR + G T E + + DG G +N+EEF+++++
Sbjct: 46 ISAAELRHVMTNLGEKLTDEE--VDEMIREADIDGDGQVNYEEFVQMMT 92
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 51.5 bits (124), Expect = 4e-09
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 31/131 (23%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQ----VFSEDGQGNLNFEEFLELLSVFSEQAS 72
I+ EL+ L + PF + +F + + +NF EF + +
Sbjct: 24 ISDTELQQ-----ALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYIT---- 74
Query: 73 RDIKVFYAFKIYDFDNDQYIGMSDL-----EIGIRLLTRSELSVQELTQVSEKVIEEADV 127
F+ YD DN I ++L G RL S Q + +I + D
Sbjct: 75 ---DWQNVFRTYDRDNSGMIDKNELKQALSGFGYRL------SDQFH----DILIRKFDR 121
Query: 128 DGDGKLSFMEF 138
G G+++F +F
Sbjct: 122 QGRGQIAFDDF 132
Score = 39.9 bits (94), Expect = 6e-05
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F+ D D I ++L+ + T + + + +I D + ++F EF
Sbjct: 12 VFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTV----RSIISMFDRENKAGVNFSEF 66
Score = 34.5 bits (80), Expect = 0.004
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 37 NPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSD 96
+ F + + F G+G + F++F++ ++ F+ YD D D +I +S
Sbjct: 109 DQFHDILIRKFDRQGRGQIAFDDFIQGC-------IVLQRLTDIFRRYDTDQDGWIQVSY 161
Query: 97 LE 98
+
Sbjct: 162 EQ 163
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 51.5 bits (124), Expect = 5e-09
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 47 FSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDL-----EIGI 101
+ ++ G + F+EF +L + R+ F+ D D + +++ G
Sbjct: 72 YDKNHSGEITFDEFKDLHH--FILSMRE-----GFRKRDSSGDGRLDSNEVRAALLSSGY 124
Query: 102 RLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
++ S Q + ++ + D G L F ++
Sbjct: 125 QV------SEQTF----QALMRKFDRQRRGSLGFDDY 151
Score = 38.8 bits (91), Expect = 2e-04
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 65 SVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEE 124
S ++++ F+ D D I + +L + S+ EK++
Sbjct: 19 SARHMNDNQELME--WFRAVDTDGSGAISVPELNAALSSAG-VPFSLATT----EKLLHM 71
Query: 125 ADVDGDGKLSFMEFEHV 141
D + G+++F EF+ +
Sbjct: 72 YDKNHSGEITFDEFKDL 88
Score = 34.2 bits (79), Expect = 0.008
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMS 95
Q + + F +G+L F++++EL R+ F YD + + +
Sbjct: 132 QALMRKFDRQRRGSLGFDDYVELSI--FVCRVRN-----VFAFYDRERTGQVTFT 179
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 48.8 bits (117), Expect = 7e-09
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 80 AFKIYDFDNDQYIGMSDL-EIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
AFK D + D Y+ +L + L LS ++ + S K+I+ AD + DGK+S EF
Sbjct: 12 AFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEF 71
Query: 139 EHVI 142
+
Sbjct: 72 LNAN 75
Score = 26.0 bits (58), Expect = 2.2
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 17 ITIAELRT-MYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLS 65
+T EL+T M + ++ + ++ + G ++ EEFL +
Sbjct: 24 VTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANA 76
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 49.1 bits (118), Expect = 7e-09
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSEL 109
G+++ ++ + SE+ +K FK+ D DN I +L+ G++ + SEL
Sbjct: 1 HSSGHIDDDDKH-MAERLSEEEIGGLKE--LFKMIDTDNSGTITFDELKDGLKRV-GSEL 56
Query: 110 SVQELTQVSEKVIEEADVDGDGKLSFMEF 138
E+ + +++ AD+D G + + EF
Sbjct: 57 MESEI----KDLMDAADIDKSGTIDYGEF 81
Score = 29.4 bits (67), Expect = 0.15
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFL 61
IT EL+ GL I + D G +++ EF+
Sbjct: 40 ITFDELKD-----GLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFI 82
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 50.7 bits (121), Expect = 9e-09
Identities = 10/112 (8%), Positives = 30/112 (26%), Gaps = 15/112 (13%)
Query: 39 FGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK--------VFYAFKIYDFDNDQ 90
+ + + +++EE+L + + + FK D D
Sbjct: 61 EWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDG 120
Query: 91 YIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142
+ + + + +L ++ V G ++ +
Sbjct: 121 IVDLEEFQ---NYCKNFQLQCADV----PAVYNVITDGGKVTFDLNRYKELY 165
Score = 36.1 bits (83), Expect = 0.002
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 76 KVFYAFK-IYDFDNDQYIGMSDLEIGIRLLT----------RSELSVQELTQVSEKVIEE 124
K+ + F D ++D I +D E + + L +
Sbjct: 9 KIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGR 68
Query: 125 ADVDGDGKLSFMEF 138
AD++ D +S+ E+
Sbjct: 69 ADINKDDVVSWEEY 82
Score = 26.8 bits (59), Expect = 2.7
Identities = 7/38 (18%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 107 SELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144
++ Q++ + + D++ DG + +FE ++ R
Sbjct: 3 NDFQKQKIKFTFDFFL---DMNHDGSIQDNDFEDMMTR 37
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 47.5 bits (114), Expect = 2e-08
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
AF ++D + I +L++ +R L ++ E+ +++ E D +G+G + F +F
Sbjct: 12 AFDLFDTNKTGSIDYHELKVAMRAL-GFDVKKPEI----LELMNEYDREGNGYIGFDDFL 66
Query: 140 HVILR 144
++
Sbjct: 67 DIMTE 71
Score = 24.4 bits (54), Expect = 7.5
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLS 65
I EL+ + + + I ++ +E +G G + F++FL++++
Sbjct: 24 IDYHELKV-----AMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMT 70
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 48.7 bits (117), Expect = 3e-08
Identities = 17/99 (17%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIK--VFYAFKIYDFDNDQYIGMSDLEIGIRLLTR 106
E ++FE FL +L ++ + F+++D + + + ++L +LT
Sbjct: 59 ELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELR---HVLTT 115
Query: 107 S--ELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143
+++ +E+ + D +G +++ F IL
Sbjct: 116 LGEKMTEEEVET-----VLAGHEDSNGCINYEAFLKHIL 149
Score = 36.4 bits (85), Expect = 0.001
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 15/65 (23%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLL----TRSELSVQELTQVSEKVIEEADVD--GDGKL 133
AF+++D D I S +R L T +E+ KV+ D ++
Sbjct: 15 AFELFDRVGDGKILYSQCGDVMRALGQNPTNAEV---------LKVLGNPKSDELKSRRV 65
Query: 134 SFMEF 138
F F
Sbjct: 66 DFETF 70
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 47.3 bits (113), Expect = 3e-08
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
FK +D + D I S+L ++ L ++ E+ +++ E D DGDG +SF EF
Sbjct: 16 IFKRFDTNGDGKISSSELGDALKTL--GSVTPDEV----RRMMAEIDTDGDGFISFDEF 68
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 49.0 bits (118), Expect = 3e-08
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS- 107
++ G LNF FL + S + + AF ++D + + + ++ LL
Sbjct: 61 KEAPGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIK---DLLENMG 117
Query: 108 -ELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVI 142
+ E+ +EA V+G GK +++F +I
Sbjct: 118 DNFNKDEM----RMTFKEAPVEG-GKFDYVKFTAMI 148
Score = 32.5 bits (75), Expect = 0.022
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
AF + D D D ++ D++ L +EL +++E G L+F F
Sbjct: 23 AFSMIDVDRDGFVSKEDIKAISEQL-GRAPDDKEL----TAMLKE----APGPLNFTMF 72
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 46.4 bits (111), Expect = 6e-08
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
AFK++D + D I + + ++ + L+ E+ E+ ++EAD DG+G + EF
Sbjct: 13 AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEV----EEAMKEADEDGNGVIDIPEF 67
Score = 24.0 bits (53), Expect = 9.8
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQ-VFSE---DGQGNLNFEEFLELLS 65
I E + + + E P + E DG G ++ EF++L+
Sbjct: 25 IDFDEFKFI-----MQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLIK 72
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 45.9 bits (110), Expect = 7e-08
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
F+ +D + D + + + + +++ K EE DVDG+G+L+ EF
Sbjct: 6 VFEKFDKNKDGKLSLDEFREVALAF-SPYFTQEDI----VKFFEEIDVDGNGELNADEFT 60
Query: 140 HVILR 144
I +
Sbjct: 61 SCIEK 65
Score = 27.5 bits (62), Expect = 0.51
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLS 65
+++ E R + + + I + F E DG G LN +EF +
Sbjct: 18 LSLDEFREV-----ALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIE 64
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 45.6 bits (109), Expect = 1e-07
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
FK +D + D I +S+L +R L S E+ ++++ E D DGDG + F EF
Sbjct: 8 IFKRFDTNGDGKISLSELTDALRTL--GSTSADEV----QRMMAEIDTDGDGFIDFNEF 60
Score = 27.1 bits (61), Expect = 0.76
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
I+++EL G S E QR+ DG G ++F EF+ + K
Sbjct: 20 ISLSELTDALRTLGSTSADEV---QRMMAEIDTDGDGFIDFNEFISFCNANPGLMKDVAK 76
Query: 77 VF 78
VF
Sbjct: 77 VF 78
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 47.1 bits (113), Expect = 1e-07
Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 22/136 (16%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIK 76
I + +L+ M+ G + ++ G LNF FL L +
Sbjct: 33 IGMEDLKDMFSSLGRVPPDD------ELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDA 86
Query: 77 VFYAFKIYDFDNDQYIGMSDL-----EIGIRLLTRSELSVQELTQVSEKVIEEADVDGDG 131
+ AF ++D D +I L +G ++ E+ + V ++A + +
Sbjct: 87 LRNAFSMFDEDGQGFIPEDYLKDLLENMGDN-FSKEEI---------KNVWKDAPLK-NK 135
Query: 132 KLSFMEFEHVILRAPD 147
+ ++ + + +A D
Sbjct: 136 QFNYNKMVDIKGKAED 151
Score = 31.0 bits (71), Expect = 0.083
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 17/63 (26%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLL----TRSELSVQELTQVSEKVIEEADVDGDGKLSF 135
AF + D D D +IGM DL+ L EL +++E G+L+F
Sbjct: 21 AFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDEL---------NAMLKEC----PGQLNF 67
Query: 136 MEF 138
F
Sbjct: 68 TAF 70
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 45.9 bits (109), Expect = 2e-07
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 81 FKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F +D ++ +L +S L +L + +D+D DGKL+ EF
Sbjct: 20 FNSHDKTMSGHLTGPQA---RTILMQSSLPQAQL----ASIWNLSDIDQDGKLTAEEF 70
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 45.9 bits (109), Expect = 2e-07
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 81 FKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F+ D +I S T+S+LS+ EL + E +D D DG L+ EF
Sbjct: 28 FRSLQPDPSSFISGSVA---KNFFTKSKLSIPEL----SYIWELSDADCDGALTLPEF 78
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 45.4 bits (108), Expect = 3e-07
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
+ +D + + I + L+ + L + EL +K+I E S+ +F
Sbjct: 37 KYMEFDLNGNGDIDIMSLKRMLEKLGV-PKTHLEL----KKLIGEVSSGSGETFSYPDFL 91
Query: 140 HVILRA 145
++L
Sbjct: 92 RMMLGK 97
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 46.7 bits (111), Expect = 3e-07
Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 33/131 (25%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQ----VFSEDGQGNLNFEEFLELLSVFSEQAS 72
+ I EL + G + +F D G+++F EF+ +
Sbjct: 68 LEINELMMG-QFPGGI-----RLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFME---- 117
Query: 73 RDIKVFYAFKIYDFDNDQYIGMSDL-----EIGIRLLTRSELSVQELTQVSEKVIEEADV 127
+ F + + ++ ++G + Q + ++
Sbjct: 118 ---LAYNLFVMNARARSGTLEPHEILPALQQLGFYI-----------NQRTSLLLHRLFA 163
Query: 128 DGDGKLSFMEF 138
G +
Sbjct: 164 RGMAFCDLNCW 174
Score = 37.1 bits (86), Expect = 7e-04
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
F D D + +++L +G LS Q +++ D D +G +SF EF
Sbjct: 56 WFMGVDRDRSGTLEINELMMGQFPGG-IRLSPQTA----LRMMRIFDTDFNGHISFYEFM 110
Query: 140 HV 141
+
Sbjct: 111 AM 112
Score = 26.3 bits (58), Expect = 4.5
Identities = 5/59 (8%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 37 NPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMS 95
+ ++F+ G + ++ + + +R Y + M
Sbjct: 152 QRTSLLLHRLFA-RGMAFCDLNCWIAICAFA--AQTRSAYQMIFMNPYYGPMKPFNPME 207
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 44.7 bits (106), Expect = 3e-07
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F D + + + L T + + E V + D D DG ++F EF
Sbjct: 32 VFAACDANRSGRLEREEFR---ALCTELRVRPADA----EAVFQRLDADRDGAITFQEF 83
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 44.0 bits (105), Expect = 3e-07
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
AF+ +D D D +I + +L + L L +EL + +I EADVD DG++++ EF
Sbjct: 11 AFRAFDQDGDGHITVDELRRAMAGL-GQPLPQEEL----DAMIREADVDQDGRVNYEEF 64
Score = 24.0 bits (53), Expect = 8.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 50 DGQGNLNFEEFLELLS 65
D G +N+EEF +L+
Sbjct: 54 DQDGRVNYEEFARMLA 69
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 44.7 bits (106), Expect = 4e-07
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 81 FKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F D D D ++ ++ + ++ L L + D GKLS +F
Sbjct: 16 FLKTDKDMDGFVSGLEV---REIFLKTGLPSTLL----AHIWSLCDTKDCGKLSKDQF 66
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 44.5 bits (106), Expect = 4e-07
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
AF ++D D I +L +R+L + + +EL + +IEE D DG G + F EF
Sbjct: 25 AFDMFDADGGGDISTKELGTVMRMLGQ-NPTKEEL----DAIIEEVDEDGSGTIDFEEFL 79
Query: 140 HVILR 144
+++R
Sbjct: 80 VMMVR 84
Score = 26.4 bits (59), Expect = 1.9
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVFSEQAS 72
I+ EL T+ + +NP + + + E DG G ++FEEFL ++ ++ +
Sbjct: 37 ISTKELGTV-----MRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDA 90
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 44.8 bits (107), Expect = 6e-07
Identities = 21/99 (21%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIKVFY--AFKIYDFDNDQYIGMSDLEIGIRLLTR 106
++ E+FL++L+ + + F+++D D IG+ +L +LT
Sbjct: 48 STLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELR---YVLTS 104
Query: 107 S--ELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143
+LS +E+ +++++ V DG +++ +F +IL
Sbjct: 105 LGEKLSNEEM----DELLKGVPVK-DGMVNYHDFVQMIL 138
Score = 34.4 bits (80), Expect = 0.005
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
AF ++D I + + +R Q T I E + ++ +F
Sbjct: 10 AFSLFDRHGTGRIPKTSIGDLLRAC------GQNPT---LAEITEIESTLPAEVDMEQF 59
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 43.6 bits (103), Expect = 9e-07
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 81 FKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
FK D + +I S T+S+L + EL + E +D D DG L+ EF
Sbjct: 15 FKTIQPDLNGFIPGSAA---KEFFTKSKLPILEL----SHIWELSDFDKDGALTLDEF 65
Score = 24.3 bits (53), Expect = 10.0
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 16 LITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEF 60
I + + + L I ++ D G L +EF
Sbjct: 25 FIPGSAAKEFFTKSKL----PILELSHIWELSDFDKDGALTLDEF 65
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 43.4 bits (103), Expect = 1e-06
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 15/71 (21%)
Query: 80 AFKIYDFDNDQYIGMSDL-----EIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134
AFK++D D + YI S+L +G +L + +E+ E++I+EAD+DGDG+++
Sbjct: 14 AFKVFDKDQNGYISASELRHVMINLGEKL------TDEEV----EQMIKEADLDGDGQVN 63
Query: 135 FMEFEHVILRA 145
+ EF +++
Sbjct: 64 YEEFVKMMMTV 74
Score = 25.2 bits (56), Expect = 4.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRD 74
DG G +N+EEF++++ +
Sbjct: 57 DGDGQVNYEEFVKMMMTVRGGGGGN 81
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 42.6 bits (101), Expect = 2e-06
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFE 139
AF+++D DND + +L +R L + Q++ +++++ D D GK F
Sbjct: 19 AFQLFDKDNDNKLTAEELGTVMRALGA-NPTKQKI----SEIVKDYDKDNSGKFDQETFL 73
Query: 140 HVILR 144
++L
Sbjct: 74 TIMLE 78
Score = 28.4 bits (64), Expect = 0.35
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLS 65
+T EL T+ + + NP Q+I ++ + D G + E FL ++
Sbjct: 31 LTAEELGTV-----MRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIML 77
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 43.7 bits (104), Expect = 2e-06
Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIKVFY--AFKIYDFDNDQYIGMSDLEIGIRLLTR 106
E + FEEFL +L + + + +++D + + + ++L +L
Sbjct: 57 EMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELR---HVLAT 113
Query: 107 S--ELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVIL 143
+++ +E+ E++++ + D +G +++ F I+
Sbjct: 114 LGEKMTEEEV----EELMKGQE-DSNGCINYEAFVKHIM 147
Score = 36.0 bits (84), Expect = 0.001
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 17/78 (21%)
Query: 67 FSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL----TRSELSVQELTQVSEKVI 122
FS+ A+ D K AF ++D D I S + R L T +E+ K++
Sbjct: 2 FSKAAADDFK--EAFLLFDRTGDAKITASQVGDIARALGQNPTNAEI---------NKIL 50
Query: 123 EEADVD--GDGKLSFMEF 138
+ ++F EF
Sbjct: 51 GNPSKEEMNAAAITFEEF 68
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 43.4 bits (103), Expect = 2e-06
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 49 EDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS- 107
E NL +E++LE LS+ ++ F +D + Y+ S ++ +LT
Sbjct: 58 ELYGDNLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMK---NILTTWG 114
Query: 108 -ELSVQELTQVSEKVIEEADVDGDGKLSFMEFEHVILR 144
L+ QE + + + + F IL+
Sbjct: 115 DALTDQEA----IDALNAFS--SEDNIDYKLFCEDILQ 146
Score = 29.9 bits (68), Expect = 0.17
Identities = 7/78 (8%), Positives = 21/78 (26%), Gaps = 11/78 (14%)
Query: 67 FSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEAD 126
E+ + V + + I + + R L + S ++
Sbjct: 9 QLEEKVDESDV--RIYFNEKSSGGKISIDNASYNARKLGLA---------PSSIDEKKIK 57
Query: 127 VDGDGKLSFMEFEHVILR 144
L++ ++ +
Sbjct: 58 ELYGDNLTYEQYLEYLSI 75
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 44.0 bits (104), Expect = 3e-06
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 29/137 (21%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQ----VFSEDGQGNLNFEEFLELLSVFSEQAS 72
I EL+ L + + PF C+ + D G + F EF EL +
Sbjct: 49 IDADELQRC-LTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELW-------A 100
Query: 73 RDIKVFYAFKIYDFDNDQYIGMSDL-----EIGIRLLTRSELSVQELTQVSEKVIEEADV 127
F +D D + +L +G RL S +V + +
Sbjct: 101 VLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRL---SPQAVNSIAK---------RY 148
Query: 128 DGDGKLSFMEFEHVILR 144
+GK++F ++ ++
Sbjct: 149 STNGKITFDDYIACCVK 165
Score = 29.7 bits (67), Expect = 0.25
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 78 FYAFKIYDFDNDQYIGMSDLEIGIRLL----TRSELSVQELTQVSEKVIEEADVDGDGKL 133
Y + D I +L+ + +++ ++ D D G +
Sbjct: 35 LYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETC----RLMVSMLDRDMSGTM 90
Query: 134 SFMEF 138
F EF
Sbjct: 91 GFNEF 95
Score = 28.6 bits (64), Expect = 0.58
Identities = 4/46 (8%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMS 95
G + F++++ + + +F+ D +
Sbjct: 149 STNGKITFDDYIACCV-------KLRALTDSFRRRDTAQQGVVNFP 187
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 43.3 bits (102), Expect = 3e-06
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 67 FSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEAD 126
+ K + +D +N+ I + L+ + L + E+ +K+I E
Sbjct: 44 NLPEKLTAFK--EKYMEFDLNNEGEIDLMSLKRMMEKLGV-PKTHLEM----KKMISEVT 96
Query: 127 VDGDGKLSFMEFEHVILRA 145
+S+ +F +++L
Sbjct: 97 GGVSDTISYRDFVNMMLGK 115
Score = 27.1 bits (60), Expect = 1.7
Identities = 7/65 (10%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVFSEQASR 73
I + L+ M + + ++ SE +++ +F+ ++ +
Sbjct: 67 IDLMSLKRM-----MEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVLK 121
Query: 74 DIKVF 78
+ +F
Sbjct: 122 LVMMF 126
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 42.1 bits (99), Expect = 3e-06
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 70 QASRDIKVFYA-FKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVD 128
Q S V+ ++ + N + D L +S L L K+ + AD D
Sbjct: 5 QLSSGNPVYEKYYRQVEAGNTGRVLALDA---AAFLKKSGLPDLIL----GKIWDLADTD 57
Query: 129 GDGKLSFMEF 138
G G LS EF
Sbjct: 58 GKGVLSKQEF 67
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 42.7 bits (101), Expect = 6e-06
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 19/126 (15%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQ----VFSEDGQGNLNFEEFLELLSVFSEQAS 72
+ EL+ L + + +PF C+ + D G + F F EL + + A
Sbjct: 16 VDAEELQRC-LTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWA--ALNAW 72
Query: 73 RDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGK 132
++ F D D + +L I L+ LS Q LT + ++ +G+
Sbjct: 73 KE-----NFMTVDQDGSGTVEHHELRQAIGLM-GYRLSPQTLTTIVKR------YSKNGR 120
Query: 133 LSFMEF 138
+ F ++
Sbjct: 121 IFFDDY 126
Score = 28.9 bits (65), Expect = 0.48
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 85 DFDNDQYIGMSDLEIGIRLL----TRSELSVQELTQVSEKVIEEADVDGDGKLSFMEFEH 140
D + +L+ + T S S++ +I D D GK+ F F+
Sbjct: 9 VAGQDGEVDAEELQRCLTQSGINGTYSPFSLETC----RIMIAMLDRDHTGKMGFNAFKE 64
Query: 141 VILR 144
+
Sbjct: 65 LWAA 68
Score = 27.7 bits (62), Expect = 1.1
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 37 NPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMS 95
I + +S++G+ + F++++ V + F+ D
Sbjct: 105 PQTLTTIVKRYSKNGR--IFFDDYVACC-VKLRALTD------FFRKRDHLQQGSANFI 154
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 42.0 bits (99), Expect = 1e-05
Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 21/129 (16%)
Query: 17 ITIAELRTM---YLWKGLFSTQENPFGQRICQ----VFSEDGQGNLNFEEFLELLSVFSE 69
++ EL + + + + + FG C+ V D G L FEEF L
Sbjct: 20 VSATELMNILNKVVTRH-PDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLW----- 73
Query: 70 QASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDG 129
+ K +K +D D IG S+L L+ + +I D
Sbjct: 74 --NNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAG-FHLNEHLYS-----MIIRRYSDE 125
Query: 130 DGKLSFMEF 138
G + F F
Sbjct: 126 GGNMDFDNF 134
Score = 28.5 bits (64), Expect = 0.67
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 37 NPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMS 95
I + +S D GN++F+ F+ L R +F AFK D D I ++
Sbjct: 112 EHLYSMIIRRYS-DEGGNMDFDNFISCL-------VRLDAMFRAFKSLDKDGTGQIQVN 162
Score = 27.4 bits (61), Expect = 1.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 122 IEEADVDGDGKLSFMEFEHV 141
+ D D GKL F EF+++
Sbjct: 53 VAVMDSDTTGKLGFEEFKYL 72
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 41.6 bits (98), Expect = 2e-05
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 29/131 (22%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQ----VFSEDGQGNLNFEEFLELLSVFSEQAS 72
I EL+ L + + PF C+ + D G + F EF EL +
Sbjct: 18 IDADELQRC-LTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELW-------A 69
Query: 73 RDIKVFYAFKIYDFDNDQYIGMSDL-----EIGIRLLTRSELSVQELTQVSEKVIEEADV 127
F +D D + +L +G RL + +V + +
Sbjct: 70 VLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRL---NPQTVNSIAK---------RY 117
Query: 128 DGDGKLSFMEF 138
GK++F ++
Sbjct: 118 STSGKITFDDY 128
Score = 27.3 bits (61), Expect = 1.4
Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 7/46 (15%)
Query: 50 DGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMS 95
G + F++++ + + +F+ D + S
Sbjct: 118 STSGKITFDDYIACC-------VKLRALTDSFRRRDSAQQGMVNFS 156
Score = 26.6 bits (59), Expect = 3.0
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 122 IEEADVDGDGKLSFMEFEHV 141
+ D D G + F EF+ +
Sbjct: 48 VSMLDRDMSGTMGFNEFKEL 67
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 39.8 bits (93), Expect = 3e-05
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F+ +D I + L+ ++ +++ E V+ G+L + +F
Sbjct: 29 EFENFDTMKTNTISREEFRAICNRR-VQILTDEQF----DRLWNEMPVNAKGRLKYPDF 82
Score = 25.5 bits (56), Expect = 4.5
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSE---DGQGNLNFEEFLELLSVFSEQAS 72
I+ E R + + T E + ++++E + +G L + +FL S +
Sbjct: 41 ISREEFRAICNRRVQILTDE-----QFDRLWNEMPVNAKGRLKYPDFLSRFSSETAATP 94
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 38.7 bits (91), Expect = 4e-05
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 80 AFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
FK D + D + +++ + R+ + Q L + + + D DG+G++ EF
Sbjct: 5 LFKEIDVNGDGAVSYEEVKAFVSKK-RAIKNEQLL----QLIFKSIDADGNGEIDQNEF 58
Score = 30.6 bits (70), Expect = 0.031
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYI 92
+ + + +G G +++EE +S + + + FK D D + I
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKN-EQLLQLIFKSIDADGNGEI 53
Score = 29.8 bits (68), Expect = 0.063
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 119 EKVIEEADVDGDGKLSFMEFEHVILR 144
E + +E DV+GDG +S+ E + + +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSK 28
Score = 26.8 bits (60), Expect = 0.82
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLS 65
++ E++ K ++ Q I + DG G ++ EF +
Sbjct: 17 VSYEEVKAFVSKKRAIKNEQL--LQLIFKSIDADGNGEIDQNEFAKFYG 63
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 38.7 bits (91), Expect = 5e-05
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 80 AFKIYDFDNDQ--YIGMSDL-EIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFM 136
AF+++ I +L + L + L +++IEE D +GDG++SF
Sbjct: 10 AFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTL----DEMIEEVDKNGDGEVSFE 65
Query: 137 EF 138
EF
Sbjct: 66 EF 67
Score = 24.5 bits (54), Expect = 7.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 49 EDGQGNLNFEEFLELLS 65
++G G ++FEEFL ++
Sbjct: 56 KNGDGEVSFEEFLVMMK 72
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 38.7 bits (90), Expect = 1e-04
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 81 FKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F +I +S L L ++ AD++ DG++ +EF
Sbjct: 39 FHSLK-PISGFITGDQA---RNFFFQSGLPQPVL----AQIWALADMNNDGRMDQVEF 88
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 37.6 bits (87), Expect = 2e-04
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 53 GNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS----- 107
G+ +E E L + K F F ++D ++D + +LE
Sbjct: 1 GSHMLKEVWEELDGLDPN-RFNPKTF--FILHDINSDGVLDEQELEALFTKELEKVYDPK 57
Query: 108 ------ELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
+E ++ E V++ D + D ++ EF
Sbjct: 58 NEEDDMREMEEERLRMREHVMKNVDTNQDRLVTLEEF 94
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 38.4 bits (90), Expect = 3e-04
Identities = 11/93 (11%), Positives = 19/93 (20%), Gaps = 10/93 (10%)
Query: 48 SEDGQGN--LNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLT 105
G L+F F + D I +
Sbjct: 353 EALGNLVEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRI-------- 404
Query: 106 RSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
L + + ++ DGK + F
Sbjct: 405 TQYLDAGGIPRTAQSEETRVWHRRDGKWQIVHF 437
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 37.1 bits (86), Expect = 3e-04
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 81 FKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
F + ++ + +L S+L V L +V E +D+D DG L EF
Sbjct: 21 FDSLS-PVNGFLSGDKV---KPVLLNSKLPVDIL----GRVWELSDIDHDGMLDRDEF 70
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 36.5 bits (84), Expect = 8e-04
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 72 SRDIKVFYA-FKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGD 130
+D + F + I ++ + + +S+L L K+ + ADVD D
Sbjct: 47 GKDKPTYDEIFYTLS-PVNGKITGANA---KKEMVKSKLPNTVL----GKIWKLADVDKD 98
Query: 131 GKLSFMEF 138
G L EF
Sbjct: 99 GLLDDEEF 106
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 36.5 bits (83), Expect = 0.001
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 8/108 (7%)
Query: 39 FGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDI---KVFYAFKIYDFDNDQYIGMS 95
+ ++ D NL E+ + E R + +Y F G
Sbjct: 105 LKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPEKNYNMYIFPVHWQFGQL 164
Query: 96 DLEIGIRLLTRSEL-----SVQELTQVSEKVIEEADVDGDGKLSFMEF 138
D L+ +EL + + + + E D+D D ++ E+
Sbjct: 165 DQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEW 212
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 34.8 bits (80), Expect = 0.002
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134
++ FY + I S ++ LS + ++K+I+ D + DG++S
Sbjct: 14 VENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRIS 73
Query: 135 FMEF 138
F E+
Sbjct: 74 FDEY 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.005
Identities = 33/147 (22%), Positives = 48/147 (32%), Gaps = 58/147 (39%)
Query: 42 RICQVFSEDGQGNLN--FEEFLEL------------------LSVFSEQASRDIKVFY-A 80
++ +F GQGN + FEE +L LS KVF
Sbjct: 155 QLVAIFG--GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 81 FKIYDF--------DNDQY----------IGMSDL---EIGIRLL--TRSEL--SVQELT 115
I ++ D D Y IG+ L + +LL T EL ++ T
Sbjct: 213 LNILEWLENPSNTPDKD-YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 116 QVSEKV-----IEEADVDGDGKLSFME 137
S+ + I E D + SF
Sbjct: 272 GHSQGLVTAVAIAETD-SWE---SFFV 294
Score = 31.2 bits (70), Expect = 0.12
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 27/113 (23%)
Query: 27 LW-KGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYD 85
+W + ++ +G I + + L F + + I+ Y+ I++
Sbjct: 1645 VWNRADNHFKDT-YGFSILDIVINNPV---------NLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 86 FDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
D + ++E +E+ + S ++ G LS +F
Sbjct: 1695 TIVDGKL-------------KTEKIFKEINEHSTSYTFRSE---KGLLSATQF 1731
Score = 29.6 bits (66), Expect = 0.39
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 28/92 (30%)
Query: 58 EEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLL--TRSELSVQELT 115
E+F ++L +E + D D + E+ + L S + ++
Sbjct: 35 EQFNKILPEPTEGFAAD------------DEPT----TPAELVGKFLGYVSSLVEPSKVG 78
Query: 116 QVSEKVIEEADVDGDGKLSFMEFEHVILRAPD 147
Q + V+ L EFE+ L D
Sbjct: 79 QFDQ-VL---------NLCLTEFENCYLEGND 100
Score = 26.9 bits (59), Expect = 3.6
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 31/74 (41%)
Query: 67 FSEQASRDIKV-FYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQE---LTQVSEKVI 122
F + I V F+ IG+R E T + ++
Sbjct: 292 FFVSVRKAITVLFF-------------------IGVR--------CYEAYPNTSLPPSIL 324
Query: 123 EEADVDGDGKLSFM 136
E++ + +G S M
Sbjct: 325 EDSLENNEGVPSPM 338
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 32.1 bits (73), Expect = 0.015
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134
I V++ + + N + DL + L +E + ++ +E D++ DG ++
Sbjct: 13 IDVYHKYSLIK-GNFHAVYRDDL----KKLLETESPQYIRKKGADVWFKELDINTDGAVN 67
Query: 135 FMEF 138
F EF
Sbjct: 68 FQEF 71
Score = 25.1 bits (55), Expect = 5.6
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELL 64
+ +L+ + L + + G +NF+EFL L+
Sbjct: 29 VYRDDLKKL-LETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILV 75
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 31.8 bits (72), Expect = 0.025
Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134
+ F+ + + + + S+L+ + S L + +K++ D + D ++
Sbjct: 25 VSTFHKYSGKE-GDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVD 83
Query: 135 FMEFEHVI 142
F E+ +
Sbjct: 84 FQEYCVFL 91
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 30.9 bits (70), Expect = 0.041
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 77 VFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFM 136
+ + F + + Y+ DL + + L Q+ +K++++ D DGK+ F
Sbjct: 11 MMFTFHKFA-GDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQ 69
Query: 137 EFEHVILR 144
F +I
Sbjct: 70 SFFSLIAG 77
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 31.8 bits (72), Expect = 0.046
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 20/135 (14%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQ----VFSEDGQGNLNFEEFLELLSVFSEQAS 72
I +L+ + + L + F C+ + G L+ EEF L
Sbjct: 21 IDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWK------- 73
Query: 73 RDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRS---ELSVQELTQVSEKVIEEADVDG 129
R + + F+ + + SDL I +S + L ++ D
Sbjct: 74 RLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLH-----LVTLRYSDS 127
Query: 130 DGKLSFMEFEHVILR 144
G++SF ++R
Sbjct: 128 VGRVSFPSLVCFLMR 142
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 30.2 bits (68), Expect = 0.080
Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134
+ F+ + + + + S+L+ + S L + +K++ D + D ++
Sbjct: 16 VSTFHKYSGKE-GDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVD 74
Query: 135 FMEFEHVI 142
F E+ +
Sbjct: 75 FQEYCVFL 82
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 31.7 bits (71), Expect = 0.080
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 20/104 (19%)
Query: 12 PVHKLITIAELRTM---YLWKGLFSTQENPFGQRICQ----VFSEDGQGNLNFEEFLELL 64
I+ EL+T+ L K + + F C+ + EDG G L +EF L
Sbjct: 543 GEDAEISAFELQTILRRVLAKR-EDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILW 601
Query: 65 SVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDL-----EIGIRL 103
+ K ++ D D + ++ E G +L
Sbjct: 602 TKI-------QKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKL 638
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 29.6 bits (67), Expect = 0.098
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 119 EKVIEEADVDGDGKLSFMEF 138
+ + +E D +GDG++SF EF
Sbjct: 50 DDLFQELDKNGDGEVSFEEF 69
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 29.8 bits (67), Expect = 0.13
Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134
+ F+ + + D + S+L+ + S L + +K++ D + D ++
Sbjct: 13 VSTFHKYSGKEGDKF-KLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVD 71
Query: 135 FMEFEHVI 142
F E+ +
Sbjct: 72 FQEYCVFL 79
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 29.4 bits (66), Expect = 0.14
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134
I VF+ + + D + S+L+ I L + +V +KV+E D +GDG+
Sbjct: 12 IDVFHQYSGREGDKH-KLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECD 70
Query: 135 FMEFEHVI 142
F EF +
Sbjct: 71 FQEFMAFV 78
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 30.5 bits (68), Expect = 0.17
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 22/100 (22%)
Query: 17 ITIAELRTM---YLWKGLFSTQENPFGQRICQ----VFSEDGQGNLNFEEFLELLSVFSE 69
++ EL + + + + + FG C+ V D G L FEEF L
Sbjct: 747 VSATELMNILNKVVTRH-PDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLW----- 800
Query: 70 QASRDIKVF-YAFKIYDFDNDQYIGMSDL-----EIGIRL 103
+IK + +K ++ D IG ++L G L
Sbjct: 801 ---NNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHL 837
Score = 29.0 bits (64), Expect = 0.75
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 17/89 (19%)
Query: 24 TMYLWKGLFSTQENPFGQRICQ----VFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFY 79
+ K F C+ + DG G L EF L +
Sbjct: 560 NRIISKHKDLRTN-GFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRI-------RNYLT 611
Query: 80 AFKIYDFDNDQYIGMSDL-----EIGIRL 103
F+ +D D + ++ G +L
Sbjct: 612 IFRKFDLDKSGSMSAYEMRMAIEAAGFKL 640
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 29.5 bits (66), Expect = 0.18
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVS-----EKVIEEADVDG 129
I F+ + + + + + + L R +L + E ++E+ D +
Sbjct: 15 INTFHQYSVKL-GHPDTLNQGEF----KELVRKDLQNFLKKENKNEKVIEHIMEDLDTNA 69
Query: 130 DGKLSFMEFEHVI 142
D +LSF EF ++
Sbjct: 70 DKQLSFEEFIMLM 82
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 29.4 bits (66), Expect = 0.20
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 119 EKVIEEADVDGDGKLSFMEF 138
++ ++ DV+ D +L F E+
Sbjct: 65 DEKMKSLDVNQDSELKFNEY 84
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 29.1 bits (65), Expect = 0.20
Identities = 8/68 (11%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134
+ F + D + + ++L+ ++ + + K + D + D ++
Sbjct: 13 VCTFQEYAGRCGDKYK-LCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVD 71
Query: 135 FMEFEHVI 142
F+E+ +
Sbjct: 72 FVEYVRSL 79
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 29.0 bits (65), Expect = 0.21
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 119 EKVIEEADVDGDGKLSFMEFEHVI 142
+++ + D + D ++ F EF ++
Sbjct: 58 DEIFQGLDANQDEQVDFQEFISLV 81
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 30.1 bits (67), Expect = 0.24
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 101 IRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
+ ++L L ++ + +DVD DG L EF
Sbjct: 480 KTWMVGTKLPNSVL----GRIWKLSDVDRDGMLDDEEF 513
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 28.6 bits (64), Expect = 0.28
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 119 EKVIEEADVDGDGKLSFMEFEHVI 142
+K+++E D +GDG++ F EF ++
Sbjct: 55 DKIMKELDENGDGEVDFQEFVVLV 78
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 28.7 bits (64), Expect = 0.31
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134
I +F D N+ I ++ I + + Q+ V ++++++ D+D DG+L
Sbjct: 16 IAIFQKHAGRD-GNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLD 74
Query: 135 FMEFEHVI 142
F EF ++I
Sbjct: 75 FQEFLNLI 82
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 28.6 bits (64), Expect = 0.33
Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLS 134
I VF+ + + + + +L+ + L Q+ + EK++ + D + D ++
Sbjct: 13 ITVFHNYSGSE-GDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVD 71
Query: 135 FMEFEHVI 142
F EF ++
Sbjct: 72 FNEFVVLV 79
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 28.6 bits (64), Expect = 0.34
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 119 EKVIEEADVDGDGKLSFMEFEHVI 142
+ +++ D + D ++ F E+ +
Sbjct: 53 DDLMKSLDKNSDQEIDFKEYSVFL 76
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 29.9 bits (66), Expect = 0.35
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 41 QRICQVFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDL 97
RI + + G + F+ F++ +S + +V +FKI D + YI + +L
Sbjct: 764 ARIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASFKILAGDKN-YITVDEL 819
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 28.6 bits (64), Expect = 0.35
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 119 EKVIEEADVDGDGKLSFMEF 138
V E+ D + D K+ F EF
Sbjct: 55 ADVFEKKDKNEDKKIDFSEF 74
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 28.2 bits (63), Expect = 0.37
Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 75 IKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVS--EKVIEEADVDGDGK 132
+ +F+ + + D +S E+ + L + EL++ Q + +++E+ D + D +
Sbjct: 13 VAIFHKYSGREGDKHT---LSKKEL--KELIQKELTIGSKLQDAEIARLMEDLDRNKDQE 67
Query: 133 LSFMEFEHVI 142
++F E+ +
Sbjct: 68 VNFQEYVTFL 77
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 29.5 bits (65), Expect = 0.42
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Query: 67 FSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEAD 126
++ + + D + D + +L+ L L++Q + K+ E D
Sbjct: 3 MDQRQKLQHWIHSCLRKADKNKDNKMNFKELK---DFLKE--LNIQVDDGYARKIFRECD 57
Query: 127 VDGDGKLSFMEFEH 140
L E E
Sbjct: 58 HSQTDSLEDEEIET 71
Score = 25.6 bits (55), Expect = 8.0
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 120 KVIEEADVDGDGKLSFMEFEHVILR 144
+ +AD + D K++F E + +
Sbjct: 15 SCLRKADKNKDNKMNFKELKDFLKE 39
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 28.2 bits (63), Expect = 0.43
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 119 EKVIEEADVDGDGKLSFMEFEHVI 142
+K++++ D +GD ++ F EF +
Sbjct: 55 DKLLKDLDANGDAQVDFSEFIVFV 78
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 27.9 bits (62), Expect = 0.68
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 119 EKVIEEADVDGDGKLSFMEFEHVI 142
+K++ D + D ++ F E+ +
Sbjct: 57 KKLMGSLDENSDQQVDFQEYAVFL 80
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 28.3 bits (64), Expect = 0.99
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 93 GMSDLEIGI----RLLTRSELSVQELTQVSEKVIEEAD 126
GM DL+ L SE ++L Q+S + I+ D
Sbjct: 1 GMIDLDFRKLTIEECLKLSEEEREKLPQLSLETIKRLD 38
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
PSI, protein structu initiative; 1.70A {Escherichia
coli} SCOP: c.1.18.3 PDB: 1t8q_A
Length = 356
Score = 28.0 bits (62), Expect = 1.2
Identities = 7/45 (15%), Positives = 20/45 (44%)
Query: 57 FEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQYIGMSDLEIGI 101
FEE +E + + ++I ++ K F + + ++ + +
Sbjct: 148 FEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEV 192
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.7
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 132 KLSFMEFEHVI-LRAPDSS 149
K + + + + L A DS+
Sbjct: 19 KQALKKLQASLKLYADDSA 37
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Length = 611
Score = 27.3 bits (60), Expect = 2.1
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 85 DFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKLSFMEF 138
D + DQ + +D +L R + + SE+ AD++ DGK++ +
Sbjct: 549 DLNGDQKVTSTD----YTMLKRYLMKSIDRFNTSEQA---ADLNRDGKINSTDL 595
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid,
hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1
d.17.1.4
Length = 367
Score = 27.3 bits (59), Expect = 2.5
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 52 QGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDNDQY 91
F + + L S + ++ AFKIY F+ ++
Sbjct: 25 LAQQQFAGYAKALDKQSNAKTGKYELGEAFKIYKFNGEED 64
>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual
protein-hydrolase complex, cellulosome; 1.90A
{Bacteroides cellulosolvens}
Length = 71
Score = 25.3 bits (56), Expect = 3.2
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 85 DFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGK 132
D + D I M+D+ I + ++ + V E+AD++ DG
Sbjct: 8 DLNGDGVINMADVMILAQSFGKAIGN--------PGVNEKADLNNDGV 47
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP:
b.71.1.1 c.1.8.1
Length = 484
Score = 26.6 bits (59), Expect = 3.4
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 20/94 (21%)
Query: 46 VFSEDGQGNLNFEEFLELLSVFSEQASRDIKVFYAFKIYDFDN----------DQYIGMS 95
V G + + F + I D+DN D + +
Sbjct: 119 VPDHMGYAGNGNDVDYSVFDPFDSSSYFHPY----CLITDWDNLTMVEDCWEGDTIVSLP 174
Query: 96 DLEIGIRLLTRSELSVQELTQVSEKVIEEADVDG 129
DL+ T ++ VDG
Sbjct: 175 DLD------TTETAVRTIWYDWVADLVSNYSVDG 202
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 26.4 bits (57), Expect = 3.5
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 102 RLLTRSEL-----SVQELTQVSEKVIEEADVDGDGKLSFMEF 138
L+ +EL + + + + E D+D D ++ E+
Sbjct: 93 GYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEW 134
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome,
calcium-binding, hydrolase; NMR {Clostridium
thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Length = 71
Score = 25.2 bits (56), Expect = 3.6
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 85 DFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKL 133
D ++D + +D R + L + AD++ DG++
Sbjct: 8 DVNDDGKVNSTDAVALKRYV---------LRSGISINTDNADLNEDGRV 47
>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex,
cellulosome, cohesi dockerin, scaffolding, cellulose
degradation; 2.03A {Clostridium thermocellum} SCOP:
a.139.1.1 PDB: 1ohz_B
Length = 63
Score = 24.8 bits (55), Expect = 4.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 85 DFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKL 133
D + D I +DL +L RS L LT ++ ADVD +G +
Sbjct: 6 DVNGDGTINSTDL----TMLKRSVLRAITLTDDAKAR---ADVDKNGSI 47
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative, BSGI,
dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Length = 88
Score = 24.9 bits (55), Expect = 5.9
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 85 DFDNDQYIGMSDLEIGIRLLTRSELSVQELTQVSEKVIEEADVDGDGKL 133
D ++D + +DL L + + T S K + ADV+ DG++
Sbjct: 24 DVNDDGKVNSTDL-----TLLKRYVLKAVSTLPSSKAEKNADVNRDGRV 67
>3ia8_A THAP domain-containing protein 4; beta barrel,structural
genomics, protein structure initiativ center for
eukaryotic structural genomics, CESG; HET: HEM; 1.79A
{Homo sapiens}
Length = 163
Score = 25.6 bits (56), Expect = 6.0
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 29 KGLFSTQEN-PFGQRICQVFSEDGQGNLNFE 58
G + T + + + + S GQ LNF
Sbjct: 25 AGTYPTLQPFQYLEEV--HISHVGQPMLNFS 53
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 25.0 bits (54), Expect = 9.9
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 17 ITIAELRTMYLWKGLFSTQENPFGQRICQVFSEDGQGNLNFEEFLELLSVFSEQA----S 72
+T EL+ ++ L + + + ++ G L EE E++++ +
Sbjct: 79 LTKDELKDF--YEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKI 136
Query: 73 RDIKVFYAFKIY---DFDNDQYIGMSDLEI 99
++ Y I D N YI M DLE
Sbjct: 137 KERADEYTALIMEELDPTNLGYIEMEDLEA 166
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous
recombination, tandem repeats, three-helix bundle,
cytoplasm; 1.50A {Xanthomonas campestris PV}
Length = 162
Score = 25.0 bits (55), Expect = 10.0
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 97 LEIGIRLLTRSELSVQELTQ-VSEKVIEEADVD 128
++ + LL E S +EL + + + IE
Sbjct: 20 VQRALGLLVHREHSKKELNRKLQARGIEPEAAQ 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.387
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,281,107
Number of extensions: 129383
Number of successful extensions: 1162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 389
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)