BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18202
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IQ2|A Chain A, Human Sorting Nexin 7, Phox Homology (Px) Domain
pdb|3IQ2|B Chain B, Human Sorting Nexin 7, Phox Homology (Px) Domain
Length = 138
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF +E VRRRY DF+WL KL E P+ IIPPLPEK + + R++ +FI R K L
Sbjct: 39 EFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKAL 98
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFS 92
+FL R+ HP L+ N IFLTA+ E S
Sbjct: 99 HKFLNRIADHPTLTFNEDFKIFLTAQAWELS 129
>pdb|2CSK|A Chain A, Solution Structure Of Px Domain From Human Snx12
Length = 146
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL------NRYSKEFI 54
P F E VRRRY+DF WL N+L E ++PPLP K +L L + + FI
Sbjct: 40 PIFKLKESCVRRRYSDFEWLKNEL-ERDSKIVVPPLPGK-ALKRQLPFRGDEGIFEESFI 97
Query: 55 LCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPG 100
R + L+QF+ ++ HP L+ N + L E ++ + + PG
Sbjct: 98 EERRQGLEQFINKIAGHP-LAQNERCLHMF---LQEEAIDRNYVPG 139
>pdb|4AKV|A Chain A, Crystal Structure Of Human Sorting Nexin 33 (Snx33)
pdb|4AKV|B Chain B, Crystal Structure Of Human Sorting Nexin 33 (Snx33)
Length = 386
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVT 69
V RRY F WL+N+L+ +P LPEK + R+ ++FI R + L ++ +T
Sbjct: 75 VYRRYKHFDWLYNRLLHKFTVISVPHLPEKQA----TGRFEEDFIEKRKRRLILWMDHMT 130
Query: 70 SHPVLS 75
SHPVLS
Sbjct: 131 SHPVLS 136
>pdb|3DYU|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|B Chain B, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|C Chain C, Crystal Structure Of Snx9px-Bar (230-595), H32
Length = 366
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHI-IPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRV 68
V RY F WL+ +L+ S I IP LP+K R+ +EFI RM+ L ++ R+
Sbjct: 54 VNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT----GRFEEEFIKMRMERLQAWMTRM 109
Query: 69 TSHPVLS 75
HPV+S
Sbjct: 110 CRHPVIS 116
>pdb|2RAJ|A Chain A, So4 Bound Px-Bar Membrane Remodeling Unit Of Sorting Nexin
9
pdb|2RAK|A Chain A, Pi(3)p Bound Px-Bar Membrane Remodeling Unit Of Sorting
Nexin 9
Length = 392
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHI-IPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRV 68
V RY F WL+ +L+ S I IP LP+K R+ +EFI RM+ L ++ R+
Sbjct: 80 VNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT----GRFEEEFIKMRMERLQAWMTRM 135
Query: 69 TSHPVLS 75
HPV+S
Sbjct: 136 CRHPVIS 142
>pdb|3HPC|X Chain X, Crystal Structure Of Snx5-Px Domain In P21 Space Group
Length = 161
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 27/111 (24%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETL--PSHIIPPLPEK----------HSLLEHLNR 48
P F E V R++ DFVWLH+ L ET IIPP P K L E
Sbjct: 37 PTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGS 96
Query: 49 YSK-EFILCRMKLLDQ--------------FLRRVTSHPVLSVNSHAIIFL 84
+K EF + +L + FL+R++SHPVLS + + +FL
Sbjct: 97 MTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFL 147
>pdb|3HPB|A Chain A, Crystal Structure Of Snx5-Px Domain In P212121 Space Group
Length = 161
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 27/111 (24%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETL--PSHIIPPLPEK----------HSLLEHLNR 48
P F E V R++ DFVWLH+ L ET IIPP P K L E
Sbjct: 37 PTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKXQKLGEGEGS 96
Query: 49 YSK-EFILCRMKLLDQ--------------FLRRVTSHPVLSVNSHAIIFL 84
+K EF + +L + FL+R++SHPVLS + + +FL
Sbjct: 97 XTKEEFAKXKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFL 147
>pdb|2I4K|A Chain A, Solution Structure Of The Px Domain Of Sorting Nexin 1
Length = 128
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVE--TLPSHIIPPLPEKHSL------LEHLNRYSKE 52
P F + V+RR++DF+ L+ KL E + I+PP PEK + + + S E
Sbjct: 33 PLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAE 92
Query: 53 FILCRMKLLDQFLRRVTSHPVL 74
F+ R L+++L+R+ +HP +
Sbjct: 93 FLEKRRAALERYLQRIVNHPTM 114
>pdb|1OCS|A Chain A, Crystal Structure Of The Yeast Px-Doamin Protein Grd19p
(Sorting Nexin3) Complexed To
Phosphatidylinosytol-3-Phosphate.
pdb|1OCU|A Chain A, Crystal Structure Of The Yeast Px-Domain Protein Grd19p
(Sorting Nexin 3) Complexed To
Phosphatidylinosytol-3-Phospahte.
pdb|1OCU|B Chain B, Crystal Structure Of The Yeast Px-Domain Protein Grd19p
(Sorting Nexin 3) Complexed To
Phosphatidylinosytol-3-Phospahte
Length = 162
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETL-----PSHIIPPLPEKHSLLEHLNRYSKEFIL 55
P F VRRRY+DF + L++ + P ++P LP K L NR+S E I
Sbjct: 69 PSFHKRVSKVRRRYSDFEFFRKXLIKEISMLNHPKVMVPHLPGKILLS---NRFSNEVIE 125
Query: 56 CRMKLLDQFLRRVTSHPVLSVNSHAII-FLTAK 87
R + L+ +++ V HP+L S ++ F+ A+
Sbjct: 126 ERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 158
>pdb|3DYT|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), C2221
Length = 366
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHI-IPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRV 68
V RY F WL+ +L+ S I IP LP+K R+ +EFI R + L + R
Sbjct: 54 VNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT----GRFEEEFIKXRXERLQAWXTRX 109
Query: 69 TSHPVLS 75
HPV+S
Sbjct: 110 CRHPVIS 116
>pdb|2RAI|A Chain A, The Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9
pdb|2RAI|B Chain B, The Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9
Length = 392
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHI-IPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRV 68
V RY F WL+ +L+ S I IP LP+K R+ +EFI R + L + R
Sbjct: 80 VNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT----GRFEEEFIKXRXERLQAWXTRX 135
Query: 69 TSHPVLS 75
HPV+S
Sbjct: 136 CRHPVIS 142
>pdb|1SPG|B Chain B, Carbonmonoxy Hemoglobin From The Teleost Fish Leiostomus
Xanthurus
Length = 147
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 75 SVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLRH 123
+++++A I AK+AE H K G L++ ++ N+ N+Y +S++H
Sbjct: 47 NISTNAAILGNAKVAE---HGKTVMGGLDRAVQNMDNIKNVYKQLSIKH 92
>pdb|3V5X|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
pdb|3V5X|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
pdb|3V5Y|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|C Chain C, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|D Chain D, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Z|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
Anaerobically
pdb|3V5Z|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
Anaerobically
Length = 161
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 84 LTAKLAEFSMHKK----HSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLY 139
L A EF MH++ + GLL + S++ YN +++ L S FE+ + + N Y
Sbjct: 47 LYATFKEFKMHEQIENEYIIGLLQQRSQTIYN---VHSDNKLSEMLSLFEKGLKNVKNEY 103
Query: 140 EKISAFEKIGTRLYKERKDYV----SEAHQFAIVLNTWAGYEPQLSSVIRQV 187
E+++ +++ RL +D++ E F +L + YE +L + ++V
Sbjct: 104 EQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYE-ELKDIKKKV 154
>pdb|3U9M|A Chain A, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|C Chain C, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|E Chain E, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|G Chain G, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
Length = 160
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 84 LTAKLAEFSMHKK----HSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLY 139
L A EF MH++ + GLL + S++ YN +++ L S FE+ + + N Y
Sbjct: 47 LYATFKEFKMHEQIENEYIIGLLQQRSQTIYN---VHSDNKLSEMLSLFEKGLKNVKNEY 103
Query: 140 EKISAFEKIGTRLYKERKDYV----SEAHQFAIVLNTWAGYEPQLSSVIRQV 187
E+++ +++ RL +D++ E F +L + YE +L + ++V
Sbjct: 104 EQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYE-ELKDIKKKV 154
>pdb|1XTE|A Chain A, Crystal Structure Of Cisk-Px Domain
Length = 154
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFL 65
+E V RRY +F L+N L + P+ + +P K ++ + +FI R L++F+
Sbjct: 37 SEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFGDN---FDPDFIKQRRAGLNEFI 92
Query: 66 RRVTSHPVLSVNSHAIIFL 84
+ + +P L + FL
Sbjct: 93 QNLVRYPELYNHPDVRAFL 111
>pdb|3FHF|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
8-Oxoguanine Dna Glycosylase (Mjogg)
Length = 214
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 148 IGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSS---VIRQVSKAVDTTASLH--KNLL 202
+G R Y++R +Y+ A +F + + +E + + ++R + K + + H +N+
Sbjct: 88 LGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNI-KGIGYKEASHFLRNVG 146
Query: 203 IEPFHEHNSHPMKDYL--MYIDAVKQVLARRDVIQAEHDM--CGEELQKKTAE 251
+ + H +++ YID + + L+RR ++ E+ + GEE+ K +E
Sbjct: 147 YDDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIGEEVNLKLSE 199
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
pdb|3QX3|B Chain B, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
Length = 803
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 103 NKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYE-KISAFEKIGTRLYKERKDYVS 161
NK SFY++ EF+++ ++I N KI ++ +GT KE K+Y +
Sbjct: 181 NKQELSFYSI-------------PEFDEWKKHIENQKAWKIKYYKGLGTSTAKEAKEYFA 227
Query: 162 EAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYI 221
+ + I+ +AG E + + K +D N + E + H + + +Y
Sbjct: 228 DMERHRILFR-YAGPEDDAAITLAFSKKKIDDRKEWLTNFM-EDRRQRRLHGLPEQFLYG 285
Query: 222 DAVKQVLARRDVIQAE 237
A K L D I E
Sbjct: 286 TATKH-LTYNDFINKE 300
>pdb|3KNT|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii 8-
Oxoguanine GlycosylaseLYASE IN COMPLEX WITH 15MER DNA
Containing 8-Oxoguanine
pdb|3KNT|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii 8-
Oxoguanine GlycosylaseLYASE IN COMPLEX WITH 15MER DNA
Containing 8-Oxoguanine
pdb|3KNT|C Chain C, Crystal Structure Of Methanocaldococcus Jannaschii 8-
Oxoguanine GlycosylaseLYASE IN COMPLEX WITH 15MER DNA
Containing 8-Oxoguanine
pdb|3KNT|D Chain D, Crystal Structure Of Methanocaldococcus Jannaschii 8-
Oxoguanine GlycosylaseLYASE IN COMPLEX WITH 15MER DNA
Containing 8-Oxoguanine
Length = 207
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 148 IGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSS---VIRQVSKAVDTTASLH--KNLL 202
+G R Y++R +Y+ A +F + + +E + + ++R + K + + H +N+
Sbjct: 81 LGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNI-KGIGYQEASHFLRNVG 139
Query: 203 IEPFHEHNSHPMKDYL--MYIDAVKQVLARRDVIQAEHDM--CGEELQKKTAE 251
+ + H +++ YID + + L+RR ++ E+ + GEE+ K +E
Sbjct: 140 YDDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIGEEVNLKLSE 192
>pdb|1XTN|A Chain A, Crystal Structure Of Cisk-Px Domain With Sulfates
pdb|1XTN|B Chain B, Crystal Structure Of Cisk-Px Domain With Sulfates
Length = 120
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFL 65
+E V RRY +F L+N L + P+ + +P K ++ + +FI R L++F+
Sbjct: 37 SEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFGDN---FDPDFIKQRRAGLNEFI 92
Query: 66 RRVTSHPVLSVNSHAIIFL 84
+ + +P L + FL
Sbjct: 93 QNLVRYPELYNHPDVRAFL 111
>pdb|3U9J|A Chain A, Crystal Structure Of Oxidized Human Fbxl5 Hemerythrin Like
Domain
pdb|3U9J|B Chain B, Crystal Structure Of Oxidized Human Fbxl5 Hemerythrin Like
Domain
Length = 160
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 84 LTAKLAEFSMHKK----HSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLY 139
L A EF H++ + GLL + S++ YN +++ L S FE+ + + N Y
Sbjct: 47 LYATFKEFKXHEQIENEYIIGLLQQRSQTIYN---VHSDNKLSEXLSLFEKGLKNVKNEY 103
Query: 140 EKISAFEKIGTRLYKERKDYV----SEAHQFAIVLNTWAGYEPQLSSVIRQV 187
E+++ +++ RL +D++ E F L + YE +L + ++V
Sbjct: 104 EQLNYAKQLKERLEAFTRDFLPHXKEEEEVFQPXLXEYFTYE-ELKDIKKKV 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,107,822
Number of Sequences: 62578
Number of extensions: 315886
Number of successful extensions: 1046
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1026
Number of HSP's gapped (non-prelim): 26
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)