Query psy18202
Match_columns 357
No_of_seqs 161 out of 1381
Neff 8.9
Searched_HMMs 46136
Date Sat Aug 17 01:28:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2273|consensus 100.0 3E-40 6.4E-45 326.6 35.6 338 1-357 140-495 (503)
2 cd07666 BAR_SNX7 The Bin/Amphi 100.0 2.5E-38 5.3E-43 277.8 26.6 240 71-356 1-240 (243)
3 cd07667 BAR_SNX30 The Bin/Amph 100.0 3.2E-36 7E-41 262.4 27.3 237 71-356 1-237 (240)
4 cd07664 BAR_SNX2 The Bin/Amphi 100.0 2E-33 4.4E-38 247.3 29.5 226 101-356 2-229 (234)
5 cd07665 BAR_SNX1 The Bin/Amphi 100.0 3E-33 6.5E-38 245.0 29.5 226 101-356 2-229 (234)
6 PF09325 Vps5: Vps5 C terminal 100.0 2.8E-33 6.1E-38 251.2 28.7 229 100-356 3-233 (236)
7 cd07627 BAR_Vps5p The Bin/Amph 100.0 1.8E-32 3.9E-37 241.3 29.3 211 123-356 1-213 (216)
8 cd07623 BAR_SNX1_2 The Bin/Amp 100.0 1.7E-31 3.6E-36 236.1 29.6 211 121-356 7-219 (224)
9 cd07624 BAR_SNX7_30 The Bin/Am 100.0 3.7E-31 7.9E-36 229.9 25.7 189 121-356 9-197 (200)
10 KOG1660|consensus 100.0 1.6E-32 3.5E-37 243.3 16.4 307 1-353 51-389 (399)
11 cd07596 BAR_SNX The Bin/Amphip 100.0 3.7E-29 8E-34 221.6 29.4 210 123-355 1-214 (218)
12 cd07662 BAR_SNX6 The Bin/Amphi 100.0 5.5E-29 1.2E-33 212.4 26.7 210 100-354 1-211 (218)
13 cd07621 BAR_SNX5_6 The Bin/Amp 100.0 5.4E-29 1.2E-33 215.2 27.0 210 100-354 1-212 (219)
14 cd07663 BAR_SNX5 The Bin/Amphi 100.0 1.6E-28 3.5E-33 211.1 27.6 210 100-354 1-211 (218)
15 cd07622 BAR_SNX4 The Bin/Amphi 100.0 6E-28 1.3E-32 208.5 26.5 187 121-355 9-195 (201)
16 cd07625 BAR_Vps17p The Bin/Amp 100.0 3.5E-27 7.7E-32 206.0 29.7 212 121-355 13-226 (230)
17 cd07628 BAR_Atg24p The Bin/Amp 100.0 9.3E-28 2E-32 205.6 24.5 181 123-356 1-182 (185)
18 cd07630 BAR_SNX_like The Bin/A 100.0 5E-27 1.1E-31 201.9 27.1 189 123-354 1-193 (198)
19 COG5391 Phox homology (PX) dom 100.0 5.1E-25 1.1E-29 213.6 33.0 332 1-354 163-515 (524)
20 cd07284 PX_SNX7 The phosphoino 99.9 3.3E-28 7.2E-33 191.5 8.5 86 1-86 30-115 (116)
21 cd07283 PX_SNX30 The phosphoin 99.9 8.5E-28 1.9E-32 189.3 8.6 86 1-86 30-115 (116)
22 KOG2528|consensus 99.9 1.5E-26 3.1E-31 211.9 16.7 218 6-233 215-445 (490)
23 cd07286 PX_SNX18 The phosphoin 99.9 3.4E-27 7.4E-32 187.0 7.9 79 6-88 30-108 (127)
24 cd06891 PX_Vps17p The phosphoi 99.9 7.1E-27 1.5E-31 187.3 7.9 84 1-87 56-140 (140)
25 cd06860 PX_SNX7_30_like The ph 99.9 1.4E-26 3E-31 183.3 8.9 87 1-87 30-116 (116)
26 cd07629 BAR_Atg20p The Bin/Amp 99.9 4.1E-24 8.9E-29 183.1 24.1 179 123-355 1-183 (187)
27 cd07291 PX_SNX5 The phosphoino 99.9 8.6E-27 1.9E-31 183.4 6.6 87 1-87 28-141 (141)
28 cd07292 PX_SNX6 The phosphoino 99.9 3.3E-26 7.2E-31 179.7 7.1 87 1-87 28-141 (141)
29 cd07285 PX_SNX9 The phosphoino 99.9 6E-26 1.3E-30 179.4 8.3 85 5-93 29-115 (126)
30 cd07282 PX_SNX2 The phosphoino 99.9 1.6E-25 3.4E-30 178.9 8.5 87 1-87 30-124 (124)
31 cd07293 PX_SNX3 The phosphoino 99.9 2.1E-25 4.6E-30 177.6 8.5 86 1-87 31-121 (123)
32 cd06861 PX_Vps5p The phosphoin 99.9 2.6E-25 5.7E-30 175.2 8.9 83 1-87 30-112 (112)
33 cd06892 PX_SNX5_like The phosp 99.9 1.9E-25 4.1E-30 178.2 6.8 86 1-86 28-140 (141)
34 cd07294 PX_SNX12 The phosphoin 99.9 9.1E-25 2E-29 175.4 8.4 87 1-88 33-124 (132)
35 cd07295 PX_Grd19 The phosphoin 99.9 1.3E-24 2.7E-29 171.6 8.4 85 1-89 31-116 (116)
36 cd06894 PX_SNX3_like The phosp 99.9 1.5E-24 3.3E-29 173.0 8.2 86 1-87 31-121 (123)
37 cd06865 PX_SNX_like The phosph 99.9 1.9E-24 4.2E-29 172.2 8.6 85 1-86 35-119 (120)
38 cd06863 PX_Atg24p The phosphoi 99.9 2.5E-24 5.5E-29 171.5 9.0 87 1-87 31-118 (118)
39 cd06864 PX_SNX4 The phosphoino 99.9 9.6E-24 2.1E-28 169.8 8.5 86 2-87 40-129 (129)
40 cd07281 PX_SNX1 The phosphoino 99.9 2E-23 4.3E-28 167.4 8.3 86 1-86 30-123 (124)
41 cd06898 PX_SNX10 The phosphoin 99.9 3.6E-23 7.9E-28 162.8 8.9 82 1-86 30-112 (113)
42 cd06866 PX_SNX8_Mvp1p_like The 99.9 5.4E-23 1.2E-27 159.7 8.4 77 6-86 28-104 (105)
43 cd07598 BAR_FAM92 The Bin/Amph 99.9 3.8E-20 8.2E-25 160.7 26.5 194 125-355 3-197 (211)
44 cd07288 PX_SNX15 The phosphoin 99.9 5.9E-23 1.3E-27 162.1 7.9 80 3-86 33-117 (118)
45 cd06867 PX_SNX41_42 The phosph 99.9 5.9E-23 1.3E-27 162.0 7.9 81 7-87 27-112 (112)
46 cd06862 PX_SNX9_18_like The ph 99.9 7.9E-23 1.7E-27 163.1 8.1 79 6-88 30-108 (125)
47 cd06868 PX_HS1BP3 The phosphoi 99.9 9.3E-23 2E-27 161.7 8.0 74 7-86 46-119 (120)
48 cd06859 PX_SNX1_2_like The pho 99.9 3.7E-22 8E-27 158.4 7.8 83 1-87 30-114 (114)
49 cd06877 PX_SNX14 The phosphoin 99.9 9.4E-22 2E-26 156.0 9.2 81 3-87 39-119 (119)
50 cd07287 PX_RPK118_like The pho 99.9 7.2E-22 1.6E-26 155.7 8.2 77 6-86 36-117 (118)
51 cd07300 PX_SNX20 The phosphoin 99.9 1.1E-21 2.3E-26 154.3 7.9 83 2-88 30-113 (114)
52 cd06879 PX_UP1_plant The phosp 99.8 2.4E-21 5.2E-26 154.4 8.4 79 4-86 59-137 (138)
53 cd07280 PX_YPT35 The phosphoin 99.8 2.4E-21 5.1E-26 154.7 8.0 82 5-86 36-120 (120)
54 cd07279 PX_SNX20_21_like The p 99.8 2.7E-21 5.9E-26 152.5 8.1 81 3-87 31-112 (112)
55 cd07301 PX_SNX21 The phosphoin 99.8 3.1E-21 6.6E-26 151.5 8.3 81 2-86 30-111 (112)
56 cd06881 PX_SNX15_like The phos 99.8 4.7E-21 1E-25 152.0 7.4 77 6-86 36-116 (117)
57 KOG2527|consensus 99.8 2.3E-21 5E-26 149.5 3.8 85 1-88 47-131 (144)
58 cd07276 PX_SNX16 The phosphoin 99.8 2.9E-20 6.3E-25 146.1 7.9 78 5-86 32-109 (110)
59 cd07597 BAR_SNX8 The Bin/Amphi 99.8 1.5E-17 3.2E-22 149.1 25.5 212 121-356 17-242 (246)
60 cd06893 PX_SNX19 The phosphoin 99.8 4.5E-20 9.9E-25 148.5 7.6 86 1-86 44-131 (132)
61 cd06870 PX_CISK The phosphoino 99.8 5.3E-20 1.1E-24 144.4 7.6 78 5-87 31-109 (109)
62 cd06886 PX_SNX27 The phosphoin 99.8 8.1E-20 1.8E-24 142.0 8.5 76 6-86 30-105 (106)
63 cd06897 PX_SNARE The phosphoin 99.8 1.4E-19 3E-24 142.2 8.6 81 4-86 25-107 (108)
64 cd06871 PX_MONaKA The phosphoi 99.8 7.2E-19 1.6E-23 139.8 8.4 80 3-89 33-112 (120)
65 cd06869 PX_UP2_fungi The phosp 99.8 5.5E-19 1.2E-23 139.7 7.6 73 5-87 47-119 (119)
66 cd06872 PX_SNX19_like_plant Th 99.8 6.9E-19 1.5E-23 136.9 7.7 77 5-86 30-106 (107)
67 cd06873 PX_SNX13 The phosphoin 99.8 1.7E-18 3.6E-23 138.0 8.5 79 4-86 37-119 (120)
68 cd06885 PX_SNX17_31 The phosph 99.8 1.4E-18 3.1E-23 134.6 7.7 76 6-86 27-102 (104)
69 cd06876 PX_MDM1p The phosphoin 99.8 2.9E-18 6.3E-23 139.3 8.8 78 5-86 54-133 (133)
70 cd06875 PX_IRAS The phosphoino 99.8 2.2E-18 4.8E-23 136.1 7.9 83 4-91 27-109 (116)
71 cd06878 PX_SNX25 The phosphoin 99.7 5.1E-18 1.1E-22 136.2 8.7 79 5-87 47-127 (127)
72 cd07626 BAR_SNX9_like The Bin/ 99.7 3E-15 6.5E-20 128.4 23.9 183 124-354 2-193 (199)
73 smart00312 PX PhoX homologous 99.7 1.1E-17 2.5E-22 130.7 7.8 79 6-85 26-105 (105)
74 cd06882 PX_p40phox The phospho 99.7 1.1E-17 2.5E-22 133.3 7.6 82 5-91 32-122 (123)
75 cd07277 PX_RUN The phosphoinos 99.7 6.5E-17 1.4E-21 127.7 7.1 79 4-87 28-106 (118)
76 cd06880 PX_SNX22 The phosphoin 99.7 1.3E-16 2.9E-21 125.0 8.3 74 5-88 30-103 (110)
77 cd06093 PX_domain The Phox Hom 99.7 2.6E-16 5.7E-21 122.9 8.4 77 6-86 30-106 (106)
78 cd06883 PX_PI3K_C2 The phospho 99.7 2.8E-16 6.2E-21 122.8 7.8 78 6-86 30-108 (109)
79 PF00787 PX: PX domain; Inter 99.6 4.3E-16 9.2E-21 123.1 6.2 82 5-87 32-113 (113)
80 cd06884 PX_PI3K_C2_68D The pho 99.5 1.4E-14 3E-19 113.1 7.6 79 5-86 31-110 (111)
81 cd06890 PX_Bem1p The phosphoin 99.5 3.1E-14 6.7E-19 112.0 8.0 78 4-86 25-111 (112)
82 cd06874 PX_KIF16B_SNX23 The ph 99.5 2.9E-14 6.3E-19 114.0 7.7 73 4-80 28-101 (127)
83 PF10456 BAR_3_WASP_bdg: WASP- 99.5 1.2E-12 2.6E-17 115.3 18.1 186 121-354 36-230 (237)
84 cd06895 PX_PLD The phosphoinos 99.5 5.5E-14 1.2E-18 114.1 7.4 78 4-86 33-139 (140)
85 cd07307 BAR The Bin/Amphiphysi 99.5 3.8E-11 8.2E-16 103.5 24.0 182 136-355 3-190 (194)
86 cd06887 PX_p47phox The phospho 99.5 2E-13 4.4E-18 107.3 7.8 78 4-87 29-116 (118)
87 cd07670 BAR_SNX18 The Bin/Amph 99.5 8.6E-12 1.9E-16 105.1 18.0 183 121-351 7-198 (207)
88 cd07669 BAR_SNX33 The Bin/Amph 99.5 1.1E-11 2.4E-16 104.8 18.4 184 121-352 7-199 (207)
89 cd07668 BAR_SNX9 The Bin/Amphi 99.4 1.4E-11 2.9E-16 104.3 18.0 184 121-352 7-199 (210)
90 cd06888 PX_FISH The phosphoino 99.4 6.6E-13 1.4E-17 104.7 8.0 78 5-86 30-118 (119)
91 cd07590 BAR_Bin3 The Bin/Amphi 99.4 3.8E-10 8.2E-15 99.0 24.9 197 121-352 6-204 (225)
92 cd07290 PX_PI3K_C2_beta The ph 99.4 1.5E-12 3.4E-17 100.4 7.7 75 8-86 32-108 (109)
93 cd07588 BAR_Amphiphysin The Bi 99.4 8.6E-10 1.9E-14 95.9 25.5 192 121-352 7-198 (211)
94 cd07611 BAR_Amphiphysin_I_II T 99.3 1.4E-09 3.1E-14 93.7 23.6 192 121-352 7-198 (211)
95 PF06730 FAM92: FAM92 protein; 99.3 2.8E-09 6.2E-14 91.5 25.1 195 124-355 9-204 (219)
96 PF03114 BAR: BAR domain; Int 99.3 9.9E-10 2.1E-14 97.4 22.7 189 124-354 24-222 (229)
97 cd07591 BAR_Rvs161p The Bin/Am 99.3 8.9E-09 1.9E-13 90.9 25.8 195 121-351 6-202 (224)
98 cd07289 PX_PI3K_C2_alpha The p 99.3 1.7E-11 3.7E-16 94.5 7.4 75 8-86 32-108 (109)
99 cd07612 BAR_Bin2 The Bin/Amphi 99.2 8.9E-09 1.9E-13 88.8 23.0 192 121-352 7-198 (211)
100 cd07599 BAR_Rvs167p The Bin/Am 99.2 2.1E-08 4.6E-13 88.6 25.0 195 125-352 1-208 (216)
101 cd07296 PX_PLD1 The phosphoino 99.2 6.7E-11 1.4E-15 94.2 6.3 80 6-86 37-134 (135)
102 smart00721 BAR BAR domain. 99.1 9.1E-08 2E-12 85.8 26.8 194 124-354 25-231 (239)
103 cd07589 BAR_DNMBP The Bin/Amph 99.1 1.7E-07 3.8E-12 81.1 24.7 181 124-351 3-184 (195)
104 cd06889 PX_NoxO1 The phosphoin 99.0 1.8E-09 4E-14 84.7 7.7 79 4-86 30-120 (121)
105 KOG3771|consensus 98.9 5.7E-07 1.2E-11 84.9 21.7 192 121-352 25-216 (460)
106 cd06896 PX_PI3K_C2_gamma The p 98.8 2.4E-08 5.3E-13 74.2 6.8 76 5-86 24-100 (101)
107 cd07603 BAR_ACAPs The Bin/Amph 98.6 7.3E-05 1.6E-09 64.8 25.8 188 128-355 4-195 (200)
108 cd07593 BAR_MUG137_fungi The B 98.6 1.7E-05 3.7E-10 69.3 21.9 185 123-352 4-200 (215)
109 cd07604 BAR_ASAPs The Bin/Amph 98.6 0.00014 3E-09 63.7 25.9 193 130-353 6-205 (215)
110 cd07601 BAR_APPL The Bin/Amphi 98.5 0.00014 3E-09 63.5 24.2 186 130-353 6-199 (215)
111 cd07602 BAR_RhoGAP_OPHN1-like 98.5 0.00028 6.1E-09 61.1 25.4 187 128-353 4-200 (207)
112 cd07606 BAR_SFC_plant The Bin/ 98.5 0.00032 7E-09 60.8 25.8 187 128-353 3-196 (202)
113 cd07637 BAR_ACAP3 The Bin/Amph 98.5 0.00027 5.9E-09 61.2 24.6 186 128-353 4-193 (200)
114 cd07595 BAR_RhoGAP_Rich-like T 98.5 0.00015 3.3E-09 64.8 23.4 193 124-353 13-217 (244)
115 cd07638 BAR_ACAP2 The Bin/Amph 98.5 0.00042 9.1E-09 59.8 25.2 185 128-352 4-192 (200)
116 cd07639 BAR_ACAP1 The Bin/Amph 98.4 0.00045 9.7E-09 59.6 24.7 186 128-353 4-193 (200)
117 cd07297 PX_PLD2 The phosphoino 98.4 4.8E-07 1E-11 70.6 5.6 80 7-86 36-129 (130)
118 cd07594 BAR_Endophilin_B The B 98.4 0.00044 9.5E-09 61.1 23.4 190 121-353 12-222 (229)
119 cd07619 BAR_Rich2 The Bin/Amph 98.3 0.00054 1.2E-08 60.9 23.4 197 122-353 10-221 (248)
120 KOG1259|consensus 98.3 8.3E-07 1.8E-11 79.8 5.3 62 5-71 38-99 (490)
121 cd07620 BAR_SH3BP1 The Bin/Amp 98.3 0.00089 1.9E-08 59.3 23.6 205 125-354 14-231 (257)
122 KOG3784|consensus 98.3 1.6E-06 3.4E-11 80.2 6.6 78 6-88 26-103 (407)
123 cd07615 BAR_Endophilin_A3 The 98.2 0.00057 1.2E-08 59.9 21.2 141 164-354 67-210 (223)
124 cd07618 BAR_Rich1 The Bin/Amph 98.2 0.00092 2E-08 59.6 22.4 194 125-353 14-219 (246)
125 cd07592 BAR_Endophilin_A The B 98.1 0.0014 3E-08 57.8 21.8 140 164-353 67-209 (223)
126 PF06456 Arfaptin: Arfaptin-li 98.1 0.0034 7.5E-08 55.6 24.4 194 124-351 31-227 (229)
127 cd07660 BAR_Arfaptin The Bin/A 98.1 0.0043 9.3E-08 53.3 25.3 192 126-353 2-194 (201)
128 cd07614 BAR_Endophilin_A2 The 98.1 0.00053 1.1E-08 60.2 18.7 181 123-353 4-209 (223)
129 cd07635 BAR_GRAF2 The Bin/Amph 98.1 0.0054 1.2E-07 53.1 25.3 183 132-353 8-200 (207)
130 cd07636 BAR_GRAF The Bin/Amphi 98.1 0.0063 1.4E-07 52.7 25.8 185 130-353 6-200 (207)
131 cd07613 BAR_Endophilin_A1 The 98.1 0.0035 7.6E-08 55.0 22.4 125 179-353 85-209 (223)
132 cd07642 BAR_ASAP2 The Bin/Amph 98.0 0.0068 1.5E-07 52.4 23.9 189 135-354 11-206 (215)
133 cd00011 BAR_Arfaptin_like The 98.0 0.008 1.7E-07 51.8 24.9 193 126-352 2-196 (203)
134 PF08397 IMD: IRSp53/MIM homol 98.0 0.0099 2.1E-07 52.5 28.8 199 135-357 5-212 (219)
135 cd07600 BAR_Gvp36 The Bin/Amph 98.0 0.0013 2.8E-08 58.7 18.3 134 177-353 102-235 (242)
136 cd07616 BAR_Endophilin_B1 The 97.9 0.0094 2E-07 52.6 23.1 191 121-353 12-222 (229)
137 cd07641 BAR_ASAP1 The Bin/Amph 97.9 0.011 2.4E-07 50.9 23.9 191 131-352 7-204 (215)
138 cd07634 BAR_GAP10-like The Bin 97.9 0.014 3E-07 50.6 24.1 179 136-353 12-200 (207)
139 cd07617 BAR_Endophilin_B2 The 97.7 0.026 5.7E-07 49.3 24.2 182 121-353 12-213 (220)
140 cd07605 I-BAR_IMD Inverse (I)- 97.6 0.042 9.1E-07 48.4 24.5 193 138-357 18-223 (223)
141 PF13805 Pil1: Eisosome compon 97.4 0.082 1.8E-06 47.6 24.2 141 141-320 58-199 (271)
142 cd07645 I-BAR_IMD_BAIAP2L1 Inv 97.4 0.079 1.7E-06 45.8 25.4 199 135-357 15-224 (226)
143 cd07632 BAR_APPL2 The Bin/Amph 97.3 0.083 1.8E-06 45.5 22.4 173 140-352 16-198 (215)
144 cd07653 F-BAR_CIP4-like The F- 97.3 0.13 2.8E-06 46.4 28.1 176 156-351 35-241 (251)
145 KOG2101|consensus 97.3 0.00048 1E-08 65.8 6.0 75 6-81 152-232 (362)
146 cd07646 I-BAR_IMD_IRSp53 Inver 97.3 0.11 2.4E-06 45.3 24.9 201 135-357 17-226 (232)
147 cd07633 BAR_OPHN1 The Bin/Amph 97.3 0.1 2.3E-06 44.8 25.8 184 131-353 7-200 (207)
148 cd07649 F-BAR_GAS7 The F-BAR ( 97.2 0.14 3.1E-06 45.6 25.8 151 175-347 52-222 (233)
149 cd07659 BAR_PICK1 The Bin/Amph 97.0 0.17 3.7E-06 43.5 24.9 196 133-352 9-206 (215)
150 cd07655 F-BAR_PACSIN The F-BAR 97.0 0.24 5.3E-06 44.9 26.5 57 285-341 167-237 (258)
151 cd07631 BAR_APPL1 The Bin/Amph 97.0 0.2 4.4E-06 43.4 25.6 172 142-351 18-197 (215)
152 cd07640 BAR_ASAP3 The Bin/Amph 97.0 0.2 4.3E-06 42.8 22.1 180 140-352 16-202 (213)
153 KOG1118|consensus 96.9 0.14 3.1E-06 46.4 17.3 95 122-217 22-141 (366)
154 cd07658 F-BAR_NOSTRIN The F-BA 96.8 0.36 7.8E-06 43.2 29.0 64 157-221 36-100 (239)
155 cd07298 PX_RICS The phosphoino 96.8 0.0048 1E-07 47.1 6.2 57 4-70 37-98 (115)
156 PF10455 BAR_2: Bin/amphiphysi 96.5 0.27 5.9E-06 44.9 16.9 134 178-354 148-281 (289)
157 KOG4773|consensus 96.4 0.0047 1E-07 56.6 4.9 79 3-86 48-136 (386)
158 cd07651 F-BAR_PombeCdc15_like 96.3 0.72 1.6E-05 41.2 26.1 71 180-251 58-129 (236)
159 cd07648 F-BAR_FCHO The F-BAR ( 96.2 0.94 2E-05 41.1 26.3 60 286-345 157-216 (261)
160 KOG3876|consensus 96.1 0.94 2E-05 40.2 22.5 129 121-258 120-249 (341)
161 KOG0521|consensus 95.6 1.2 2.7E-05 46.6 18.8 182 129-349 24-209 (785)
162 cd07674 F-BAR_FCHO1 The F-BAR 95.4 2 4.4E-05 38.9 26.6 57 286-342 150-213 (261)
163 KOG3651|consensus 95.3 1.9 4E-05 39.3 16.2 193 133-353 139-337 (429)
164 cd07661 BAR_ICA69 The Bin/Amph 95.3 1.6 3.5E-05 37.3 24.9 186 133-353 9-197 (204)
165 PF09325 Vps5: Vps5 C terminal 95.3 2 4.3E-05 38.1 22.9 70 126-195 31-102 (236)
166 cd07596 BAR_SNX The Bin/Amphip 95.1 2 4.3E-05 37.4 25.5 71 127-197 12-86 (218)
167 cd07299 PX_TCGAP The phosphoin 95.1 0.061 1.3E-06 40.8 5.4 59 4-70 35-96 (113)
168 KOG0905|consensus 95.1 0.032 6.9E-07 58.9 5.1 74 9-86 1409-1484(1639)
169 cd07676 F-BAR_FBP17 The F-BAR 94.9 2.7 5.9E-05 37.9 28.4 65 285-349 162-241 (253)
170 cd07650 F-BAR_Syp1p_like The F 94.9 2.7 5.7E-05 37.4 24.1 51 301-351 147-197 (228)
171 cd07680 F-BAR_PACSIN1 The F-BA 94.8 2.9 6.3E-05 37.8 28.0 39 285-323 167-205 (258)
172 cd07681 F-BAR_PACSIN3 The F-BA 94.8 3 6.5E-05 37.7 27.8 56 285-340 167-236 (258)
173 cd07643 I-BAR_IMD_MIM Inverse 94.7 2.7 5.8E-05 36.9 21.7 128 121-258 17-144 (231)
174 cd07278 PX_RICS_like The phosp 94.7 0.1 2.2E-06 39.8 5.7 59 4-70 36-97 (114)
175 cd07672 F-BAR_PSTPIP2 The F-BA 94.4 3.6 7.8E-05 36.8 27.2 55 286-340 154-222 (240)
176 cd07679 F-BAR_PACSIN2 The F-BA 94.4 3.7 8.1E-05 37.0 27.8 56 285-340 167-236 (258)
177 cd07673 F-BAR_FCHO2 The F-BAR 94.2 4.3 9.4E-05 37.0 27.0 58 285-342 156-220 (269)
178 KOG3725|consensus 93.0 6.3 0.00014 35.1 17.9 137 180-351 111-253 (375)
179 cd07686 F-BAR_Fer The F-BAR (F 92.8 6.6 0.00014 34.9 25.5 95 156-251 35-135 (234)
180 cd07647 F-BAR_PSTPIP The F-BAR 92.2 8.3 0.00018 34.5 27.3 56 286-341 153-222 (239)
181 PF11559 ADIP: Afadin- and alp 91.9 6.2 0.00013 32.5 15.8 81 215-324 31-111 (151)
182 COG5391 Phox homology (PX) dom 91.6 16 0.00035 36.6 21.8 77 3-80 87-171 (524)
183 cd07657 F-BAR_Fes_Fer The F-BA 91.1 11 0.00024 33.7 25.8 141 181-341 64-231 (237)
184 PF10168 Nup88: Nuclear pore c 90.9 17 0.00036 38.1 17.2 37 313-351 634-670 (717)
185 KOG1451|consensus 90.7 20 0.00043 36.0 23.6 171 139-348 33-212 (812)
186 cd07651 F-BAR_PombeCdc15_like 90.5 12 0.00027 33.2 22.0 23 318-340 196-218 (236)
187 PF12128 DUF3584: Protein of u 90.1 36 0.00078 38.1 25.6 49 286-334 359-407 (1201)
188 cd07671 F-BAR_PSTPIP1 The F-BA 89.8 14 0.00031 33.0 28.0 56 285-340 152-221 (242)
189 KOG2273|consensus 88.9 27 0.00058 34.9 25.1 196 132-353 273-476 (503)
190 PRK11546 zraP zinc resistance 88.0 6.2 0.00013 32.1 9.2 50 236-307 61-110 (143)
191 cd07610 FCH_F-BAR The Extended 86.3 20 0.00042 30.5 25.0 66 157-223 31-97 (191)
192 cd07307 BAR The Bin/Amphiphysi 86.0 19 0.00041 30.0 21.0 69 128-196 2-75 (194)
193 PF04048 Sec8_exocyst: Sec8 ex 85.8 18 0.00038 29.5 11.9 97 161-258 19-115 (142)
194 cd07598 BAR_FAM92 The Bin/Amph 85.7 24 0.00052 30.9 23.5 115 126-244 11-126 (211)
195 cd07655 F-BAR_PACSIN The F-BAR 85.5 28 0.0006 31.5 20.4 60 293-352 168-230 (258)
196 KOG4460|consensus 81.7 59 0.0013 32.4 14.5 63 287-350 610-678 (741)
197 cd07627 BAR_Vps5p The Bin/Amph 81.7 35 0.00077 29.9 27.2 67 127-193 12-80 (216)
198 PF15642 Tox-ODYAM1: Toxin in 80.9 43 0.00092 30.2 19.9 89 229-344 120-210 (385)
199 PRK04778 septation ring format 79.0 79 0.0017 32.2 19.7 8 30-37 164-171 (569)
200 cd07623 BAR_SNX1_2 The Bin/Amp 78.5 47 0.001 29.3 24.2 43 126-168 19-61 (224)
201 PF13805 Pil1: Eisosome compon 76.3 61 0.0013 29.5 21.2 148 144-350 54-215 (271)
202 PRK10869 recombination and rep 74.6 1E+02 0.0022 31.3 20.8 15 287-301 342-356 (553)
203 cd07644 I-BAR_IMD_BAIAP2L2 Inv 73.4 61 0.0013 28.1 24.1 120 135-258 15-141 (215)
204 cd07685 F-BAR_Fes The F-BAR (F 73.1 68 0.0015 28.5 24.1 85 144-229 23-115 (237)
205 cd07675 F-BAR_FNBP1L The F-BAR 72.8 73 0.0016 28.7 27.5 63 286-348 162-239 (252)
206 cd07630 BAR_SNX_like The Bin/A 72.3 64 0.0014 27.9 22.9 105 127-236 12-135 (198)
207 PRK14155 heat shock protein Gr 71.6 31 0.00067 30.1 8.6 54 286-339 20-73 (208)
208 KOG0996|consensus 69.5 1.8E+02 0.004 32.0 20.5 26 288-313 937-962 (1293)
209 cd07680 F-BAR_PACSIN1 The F-BA 68.5 93 0.002 28.2 20.2 56 286-341 175-237 (258)
210 TIGR03545 conserved hypothetic 67.4 1.3E+02 0.0029 30.5 13.2 55 286-340 219-273 (555)
211 KOG0994|consensus 67.3 2E+02 0.0044 31.7 18.4 190 105-326 1561-1750(1758)
212 cd07663 BAR_SNX5 The Bin/Amphi 67.2 89 0.0019 27.5 21.1 105 128-232 32-147 (218)
213 cd07652 F-BAR_Rgd1 The F-BAR ( 66.7 94 0.002 27.6 27.3 70 180-251 63-133 (234)
214 PRK14141 heat shock protein Gr 66.2 48 0.001 29.0 8.6 56 285-340 37-92 (209)
215 PRK14140 heat shock protein Gr 65.5 60 0.0013 27.9 9.0 54 286-339 44-97 (191)
216 PRK14161 heat shock protein Gr 65.4 56 0.0012 27.8 8.7 54 285-338 25-78 (178)
217 PRK14151 heat shock protein Gr 65.3 54 0.0012 27.8 8.6 53 286-338 27-79 (176)
218 PF15066 CAGE1: Cancer-associa 64.9 1.5E+02 0.0032 29.2 23.5 79 180-258 388-468 (527)
219 PF04108 APG17: Autophagy prot 64.6 1.4E+02 0.0031 29.0 17.2 20 209-228 333-352 (412)
220 PRK14154 heat shock protein Gr 64.2 59 0.0013 28.4 8.7 54 286-339 59-112 (208)
221 PRK14139 heat shock protein Gr 64.2 59 0.0013 27.8 8.6 53 286-338 39-91 (185)
222 PRK14147 heat shock protein Gr 63.9 57 0.0012 27.6 8.4 53 286-338 25-77 (172)
223 PRK14157 heat shock protein Gr 63.4 55 0.0012 29.0 8.5 52 286-337 84-135 (227)
224 COG0497 RecN ATPase involved i 63.3 1.8E+02 0.0038 29.6 21.0 21 238-258 320-340 (557)
225 cd07657 F-BAR_Fes_Fer The F-BA 63.1 1.1E+02 0.0024 27.2 24.6 10 242-251 118-127 (237)
226 PF04108 APG17: Autophagy prot 62.9 1.5E+02 0.0033 28.8 24.7 32 168-199 196-227 (412)
227 PRK14163 heat shock protein Gr 62.8 61 0.0013 28.4 8.6 53 286-338 47-99 (214)
228 PF07889 DUF1664: Protein of u 62.6 78 0.0017 25.3 10.7 48 180-229 66-113 (126)
229 COG0576 GrpE Molecular chapero 62.6 72 0.0016 27.5 9.0 54 286-339 43-96 (193)
230 PRK14149 heat shock protein Gr 62.3 66 0.0014 27.7 8.6 55 285-339 42-96 (191)
231 cd00890 Prefoldin Prefoldin is 62.1 75 0.0016 24.9 11.4 31 286-316 94-124 (129)
232 PF10498 IFT57: Intra-flagella 61.4 1.5E+02 0.0033 28.2 17.2 46 208-253 266-311 (359)
233 PRK14158 heat shock protein Gr 61.3 73 0.0016 27.5 8.7 52 286-337 47-98 (194)
234 cd07605 I-BAR_IMD Inverse (I)- 61.3 1.2E+02 0.0025 26.9 19.8 116 124-250 18-140 (223)
235 PF04728 LPP: Lipoprotein leuc 60.3 47 0.001 22.3 5.8 31 286-316 17-47 (56)
236 PF05667 DUF812: Protein of un 60.1 2.1E+02 0.0045 29.4 26.8 62 286-348 505-566 (594)
237 PRK14153 heat shock protein Gr 59.7 77 0.0017 27.4 8.6 52 286-337 40-91 (194)
238 PRK14144 heat shock protein Gr 59.6 77 0.0017 27.5 8.6 54 286-339 52-105 (199)
239 PF09425 CCT_2: Divergent CCT 59.4 7.5 0.00016 21.9 1.6 11 57-67 4-14 (27)
240 KOG4571|consensus 59.1 77 0.0017 29.0 8.7 18 240-257 238-255 (294)
241 PRK14143 heat shock protein Gr 59.0 79 0.0017 28.3 8.8 49 287-335 75-123 (238)
242 TIGR00634 recN DNA repair prot 58.9 2.1E+02 0.0046 29.1 20.0 17 287-303 347-363 (563)
243 PF14389 Lzipper-MIP1: Leucine 58.6 73 0.0016 23.6 10.1 32 285-316 53-84 (88)
244 KOG0250|consensus 57.9 2.9E+02 0.0062 30.3 25.0 32 286-317 401-432 (1074)
245 cd07664 BAR_SNX2 The Bin/Amphi 57.8 1.4E+02 0.003 26.6 22.2 108 126-233 29-148 (234)
246 PRK14159 heat shock protein Gr 57.5 93 0.002 26.4 8.6 53 286-338 30-82 (176)
247 PRK14156 heat shock protein Gr 57.3 90 0.002 26.5 8.5 54 285-338 33-86 (177)
248 cd07647 F-BAR_PSTPIP The F-BAR 56.9 1.4E+02 0.0031 26.5 23.2 52 294-345 154-208 (239)
249 PRK14148 heat shock protein Gr 56.8 94 0.002 26.9 8.6 51 286-336 47-97 (195)
250 PF02403 Seryl_tRNA_N: Seryl-t 56.3 88 0.0019 23.8 11.0 27 286-312 74-100 (108)
251 PF07139 DUF1387: Protein of u 56.3 1.7E+02 0.0037 27.1 12.9 18 180-197 180-197 (302)
252 PF01920 Prefoldin_2: Prefoldi 55.5 86 0.0019 23.5 10.6 42 272-313 48-89 (106)
253 KOG0933|consensus 55.3 3.1E+02 0.0067 29.9 25.7 56 123-178 681-736 (1174)
254 PHA02562 46 endonuclease subun 55.2 2.4E+02 0.0051 28.4 23.0 9 5-13 83-91 (562)
255 PRK14145 heat shock protein Gr 54.9 1.1E+02 0.0024 26.5 8.7 53 286-338 52-104 (196)
256 PRK14164 heat shock protein Gr 53.3 1E+02 0.0022 27.1 8.5 53 286-338 77-129 (218)
257 PRK14162 heat shock protein Gr 53.0 1.2E+02 0.0026 26.2 8.7 41 286-326 46-86 (194)
258 PRK14160 heat shock protein Gr 52.8 1.6E+02 0.0035 25.8 10.3 37 288-324 70-106 (211)
259 PRK14146 heat shock protein Gr 52.5 1.1E+02 0.0024 26.8 8.6 54 286-339 61-114 (215)
260 cd07621 BAR_SNX5_6 The Bin/Amp 52.2 1.7E+02 0.0036 25.8 22.3 107 127-233 32-149 (219)
261 PRK14160 heat shock protein Gr 51.5 1.2E+02 0.0027 26.5 8.6 48 286-333 54-104 (211)
262 PRK14162 heat shock protein Gr 51.1 1.6E+02 0.0035 25.4 9.2 44 285-332 38-81 (194)
263 PF01025 GrpE: GrpE; InterPro 50.4 61 0.0013 26.8 6.5 54 286-339 18-71 (165)
264 PF12325 TMF_TATA_bd: TATA ele 50.1 1.3E+02 0.0027 23.8 14.9 54 286-340 61-117 (120)
265 PF08537 NBP1: Fungal Nap bind 50.0 2.2E+02 0.0048 26.6 13.7 45 286-335 175-219 (323)
266 KOG3691|consensus 49.0 2.6E+02 0.0057 29.8 11.6 44 157-200 53-97 (982)
267 PF08898 DUF1843: Domain of un 48.4 50 0.0011 21.9 4.3 40 218-257 13-52 (53)
268 PF00140 Sigma70_r1_2: Sigma-7 47.2 14 0.0003 22.5 1.5 22 60-81 3-24 (37)
269 PF07295 DUF1451: Protein of u 46.6 1.3E+02 0.0027 24.8 7.5 50 291-340 9-58 (146)
270 PRK14143 heat shock protein Gr 46.3 2E+02 0.0044 25.7 9.4 45 286-334 67-111 (238)
271 PF05377 FlaC_arch: Flagella a 45.8 49 0.0011 22.2 4.0 32 286-317 7-38 (55)
272 PF04728 LPP: Lipoprotein leuc 45.8 92 0.002 21.0 6.1 39 286-324 3-44 (56)
273 KOG4796|consensus 44.7 2.6E+02 0.0056 28.1 10.3 29 328-356 576-604 (604)
274 PF08317 Spc7: Spc7 kinetochor 44.5 2.7E+02 0.0059 26.0 20.0 39 286-324 244-282 (325)
275 PF07352 Phage_Mu_Gam: Bacteri 44.3 1.2E+02 0.0025 24.8 7.1 57 286-346 10-66 (149)
276 PF11887 DUF3407: Protein of u 44.1 2.5E+02 0.0054 25.5 12.6 68 133-200 49-116 (267)
277 PLN02866 phospholipase D 43.8 19 0.00041 38.9 2.8 38 51-88 135-172 (1068)
278 KOG2856|consensus 43.7 3E+02 0.0064 26.3 24.9 56 285-340 176-245 (472)
279 PRK14139 heat shock protein Gr 43.5 2.1E+02 0.0046 24.5 9.1 54 286-343 32-89 (185)
280 PF15233 SYCE1: Synaptonemal c 43.5 1.7E+02 0.0037 23.4 7.4 49 286-335 6-57 (134)
281 KOG2398|consensus 42.8 4E+02 0.0086 27.5 23.0 60 286-345 139-205 (611)
282 PRK10698 phage shock protein P 42.3 2.4E+02 0.0052 24.8 19.0 71 100-174 2-72 (222)
283 PRK05849 hypothetical protein; 40.8 65 0.0014 34.1 6.2 89 27-115 296-400 (783)
284 cd07607 BAR_SH3P_plant The Bin 40.7 2.3E+02 0.0051 24.2 22.1 142 180-353 59-203 (209)
285 PF09726 Macoilin: Transmembra 40.5 4.6E+02 0.01 27.6 23.1 57 286-343 545-601 (697)
286 cd07667 BAR_SNX30 The Bin/Amph 40.5 2.7E+02 0.0059 24.9 20.4 37 138-174 84-120 (240)
287 PF01601 Corona_S2: Coronaviru 40.1 2.8E+02 0.006 28.3 10.0 59 180-258 271-329 (610)
288 PF01025 GrpE: GrpE; InterPro 40.1 92 0.002 25.7 6.1 64 285-348 10-73 (165)
289 cd07622 BAR_SNX4 The Bin/Amphi 39.8 2.5E+02 0.0054 24.3 19.9 65 129-193 24-88 (201)
290 PRK14154 heat shock protein Gr 39.6 2.6E+02 0.0056 24.4 9.1 44 286-333 52-95 (208)
291 PRK14158 heat shock protein Gr 39.5 2.5E+02 0.0054 24.2 9.7 43 286-332 40-82 (194)
292 PF06160 EzrA: Septation ring 39.5 4.3E+02 0.0093 26.9 23.7 21 57-77 26-46 (560)
293 PF04012 PspA_IM30: PspA/IM30 39.3 2.6E+02 0.0056 24.3 22.2 70 100-173 1-70 (221)
294 PRK05431 seryl-tRNA synthetase 38.9 3.5E+02 0.0076 26.4 10.6 27 286-312 73-99 (425)
295 TIGR00606 rad50 rad50. This fa 38.7 6.4E+02 0.014 28.7 25.6 44 128-171 824-867 (1311)
296 PLN02678 seryl-tRNA synthetase 38.1 4.1E+02 0.0088 26.3 10.9 26 286-311 78-103 (448)
297 PF04508 Pox_A_type_inc: Viral 37.7 54 0.0012 17.8 2.6 18 288-305 3-20 (23)
298 PF05377 FlaC_arch: Flagella a 37.5 1.3E+02 0.0028 20.2 6.2 30 287-316 1-30 (55)
299 PRK14155 heat shock protein Gr 37.1 2.9E+02 0.0062 24.2 8.7 54 286-343 13-70 (208)
300 PRK11020 hypothetical protein; 37.1 2E+02 0.0043 22.4 7.2 25 284-308 29-53 (118)
301 cd07624 BAR_SNX7_30 The Bin/Am 36.9 2.7E+02 0.0059 23.9 23.3 47 127-173 22-68 (200)
302 KOG0804|consensus 36.5 4.2E+02 0.0092 26.0 11.8 21 286-306 382-402 (493)
303 PF05278 PEARLI-4: Arabidopsis 36.4 3.3E+02 0.0072 24.8 12.0 15 27-41 8-22 (269)
304 COG1730 GIM5 Predicted prefold 36.4 2.4E+02 0.0052 23.1 10.1 39 209-247 10-48 (145)
305 cd07628 BAR_Atg24p The Bin/Amp 36.3 2.7E+02 0.0059 23.7 18.4 41 130-170 15-55 (185)
306 PF10168 Nup88: Nuclear pore c 36.1 5.5E+02 0.012 27.1 22.1 29 286-314 685-713 (717)
307 PF08172 CASP_C: CASP C termin 36.0 3.3E+02 0.0071 24.5 10.1 28 286-313 93-120 (248)
308 PHA02135 hypothetical protein 35.9 29 0.00063 26.1 2.0 22 26-48 42-63 (122)
309 PF00611 FCH: Fes/CIP4, and EF 34.7 1.7E+02 0.0037 20.9 10.6 73 128-200 11-86 (91)
310 cd07662 BAR_SNX6 The Bin/Amphi 34.3 3.3E+02 0.0071 24.0 20.5 26 208-233 123-148 (218)
311 PF07106 TBPIP: Tat binding pr 34.2 2.7E+02 0.0059 23.1 10.4 54 235-309 85-139 (169)
312 COG5185 HEC1 Protein involved 34.1 4.8E+02 0.01 25.9 17.7 202 130-351 404-615 (622)
313 PRK14163 heat shock protein Gr 33.7 3.3E+02 0.0072 23.9 8.9 54 286-343 40-97 (214)
314 KOG0972|consensus 33.7 3.9E+02 0.0084 24.7 16.4 15 58-72 61-75 (384)
315 KOG4403|consensus 33.5 4.7E+02 0.01 25.6 19.4 68 238-326 356-423 (575)
316 PRK14153 heat shock protein Gr 33.3 3.1E+02 0.0067 23.7 8.2 43 286-332 33-75 (194)
317 PF11932 DUF3450: Protein of u 33.1 3.6E+02 0.0077 24.1 15.5 11 327-337 132-142 (251)
318 KOG0996|consensus 33.1 7.3E+02 0.016 27.7 22.9 21 57-77 140-160 (1293)
319 KOG3003|consensus 32.6 3.6E+02 0.0078 24.0 8.9 58 287-344 78-135 (236)
320 PRK14151 heat shock protein Gr 32.3 3.1E+02 0.0068 23.2 8.8 43 286-332 20-62 (176)
321 PF09006 Surfac_D-trimer: Lung 32.3 1.4E+02 0.003 19.2 4.9 24 288-311 1-24 (46)
322 KOG3614|consensus 32.0 1.7E+02 0.0037 32.7 7.6 63 15-88 1049-1112(1381)
323 KOG0979|consensus 31.3 7.3E+02 0.016 27.2 21.8 32 286-317 276-307 (1072)
324 TIGR00996 Mtu_fam_mce virulenc 31.2 4E+02 0.0087 24.1 12.4 10 244-253 270-279 (291)
325 PF01166 TSC22: TSC-22/dip/bun 31.2 1.1E+02 0.0025 20.7 4.0 31 285-315 13-43 (59)
326 PRK14147 heat shock protein Gr 31.1 3.2E+02 0.007 23.0 8.6 43 287-333 19-61 (172)
327 PF06008 Laminin_I: Laminin Do 31.0 3.9E+02 0.0086 24.0 24.5 22 286-307 192-213 (264)
328 PRK15396 murein lipoprotein; P 30.9 1.6E+02 0.0034 21.4 5.0 22 287-308 26-47 (78)
329 PF10264 Stork_head: Winged he 30.5 55 0.0012 23.8 2.7 18 17-34 32-49 (80)
330 PF15079 DUF4546: Domain of un 30.5 3.2E+02 0.0069 22.9 7.3 37 289-325 50-86 (205)
331 cd07665 BAR_SNX1 The Bin/Amphi 30.1 4E+02 0.0086 23.7 21.7 108 126-233 29-148 (234)
332 PRK14142 heat shock protein Gr 30.0 3.1E+02 0.0067 24.2 7.7 51 287-337 41-91 (223)
333 TIGR00606 rad50 rad50. This fa 29.9 8.8E+02 0.019 27.7 25.5 9 60-68 664-672 (1311)
334 KOG4797|consensus 29.9 1.7E+02 0.0037 22.5 5.2 39 285-323 66-105 (123)
335 PRK14148 heat shock protein Gr 29.5 3.7E+02 0.0081 23.2 9.3 44 286-333 40-83 (195)
336 PF11953 DUF3470: Domain of un 29.5 35 0.00075 21.6 1.3 34 15-48 2-37 (43)
337 PRK00409 recombination and DNA 29.4 6.5E+02 0.014 26.9 11.5 13 328-340 606-618 (782)
338 KOG2264|consensus 29.3 6.3E+02 0.014 25.8 10.4 6 218-223 85-90 (907)
339 cd00584 Prefoldin_alpha Prefol 28.6 2.9E+02 0.0063 21.7 10.8 30 286-315 94-123 (129)
340 PF04782 DUF632: Protein of un 28.4 4.9E+02 0.011 24.3 12.5 53 284-343 127-179 (312)
341 PF15397 DUF4618: Domain of un 27.5 4.7E+02 0.01 23.7 23.5 60 286-348 120-179 (258)
342 PF04799 Fzo_mitofusin: fzo-li 27.5 2.7E+02 0.0059 23.5 6.6 39 287-326 128-166 (171)
343 PF11471 Sugarporin_N: Maltopo 27.4 1.3E+02 0.0028 20.6 3.9 26 285-310 31-56 (60)
344 KOG0976|consensus 27.4 7.9E+02 0.017 26.3 22.2 102 213-337 236-341 (1265)
345 KOG2150|consensus 27.2 6.7E+02 0.015 25.4 17.3 22 286-307 122-143 (575)
346 KOG3990|consensus 27.2 3.2E+02 0.0069 24.6 7.2 32 214-245 227-258 (305)
347 PRK14161 heat shock protein Gr 27.1 3.9E+02 0.0085 22.7 8.7 40 288-331 21-60 (178)
348 PRK14150 heat shock protein Gr 26.7 3.8E+02 0.0082 23.1 7.7 50 286-335 41-94 (193)
349 KOG2391|consensus 26.6 5.5E+02 0.012 24.2 11.3 20 61-80 22-41 (365)
350 cd07601 BAR_APPL The Bin/Amphi 26.3 4.5E+02 0.0097 23.1 12.7 41 127-167 10-50 (215)
351 PF14257 DUF4349: Domain of un 26.2 3.4E+02 0.0073 24.4 7.8 30 286-315 162-191 (262)
352 PRK09039 hypothetical protein; 26.1 5.6E+02 0.012 24.2 23.1 7 319-325 191-197 (343)
353 PF15400 TEX33: Testis-express 26.0 40 0.00088 27.0 1.4 57 5-67 48-105 (140)
354 PF10018 Med4: Vitamin-D-recep 25.7 4.2E+02 0.0091 22.5 8.8 32 286-317 29-60 (188)
355 PRK14145 heat shock protein Gr 25.2 4.5E+02 0.0098 22.7 9.4 42 286-331 45-86 (196)
356 cd07672 F-BAR_PSTPIP2 The F-BA 24.9 5E+02 0.011 23.1 22.5 48 157-206 36-84 (240)
357 PF08946 Osmo_CC: Osmosensory 24.9 1.7E+02 0.0036 18.8 3.7 20 286-305 19-38 (46)
358 PF05276 SH3BP5: SH3 domain-bi 24.8 5.1E+02 0.011 23.2 22.2 36 221-256 127-162 (239)
359 KOG4848|consensus 24.8 4.5E+02 0.0097 22.6 8.5 37 317-354 124-160 (225)
360 PRK11637 AmiB activator; Provi 24.6 6.6E+02 0.014 24.4 26.4 20 288-307 221-240 (428)
361 cd07666 BAR_SNX7 The Bin/Amphi 24.5 5.2E+02 0.011 23.2 22.5 54 290-350 188-241 (243)
362 PRK03947 prefoldin subunit alp 24.1 3.7E+02 0.0081 21.4 11.9 31 286-316 101-131 (140)
363 PF12443 AKNA: AT-hook-contain 23.7 82 0.0018 24.2 2.6 32 286-317 45-76 (106)
364 PRK06665 flgK flagellar hook-a 23.6 8.3E+02 0.018 25.3 11.2 20 157-176 115-134 (627)
365 PRK04778 septation ring format 23.6 7.9E+02 0.017 25.0 28.1 102 127-228 106-221 (569)
366 cd07673 F-BAR_FCHO2 The F-BAR 23.5 5.6E+02 0.012 23.2 23.2 142 180-350 65-213 (269)
367 PHA02047 phage lambda Rz1-like 23.2 3.3E+02 0.0072 20.5 5.7 37 288-324 43-79 (101)
368 PF04977 DivIC: Septum formati 23.2 2.5E+02 0.0055 19.5 5.2 20 288-307 26-45 (80)
369 TIGR02169 SMC_prok_A chromosom 23.1 1E+03 0.023 26.2 27.3 6 8-13 93-98 (1164)
370 COG1422 Predicted membrane pro 22.6 4.2E+02 0.0092 22.9 7.0 25 284-308 70-94 (201)
371 PF13871 Helicase_C_4: Helicas 22.5 94 0.002 28.5 3.3 29 60-88 232-260 (278)
372 PF11887 DUF3407: Protein of u 22.3 5.9E+02 0.013 23.1 13.9 50 146-195 41-90 (267)
373 PRK09343 prefoldin subunit bet 22.3 3.9E+02 0.0084 21.0 12.0 26 211-236 10-35 (121)
374 PF00157 Pou: Pou domain - N-t 22.3 2.4E+02 0.0052 20.3 4.6 36 142-177 6-41 (75)
375 smart00787 Spc7 Spc7 kinetocho 22.2 6.5E+02 0.014 23.5 20.3 37 287-323 240-276 (312)
376 TIGR02894 DNA_bind_RsfA transc 22.0 4.7E+02 0.01 21.8 12.8 31 286-316 118-148 (161)
377 PRK11637 AmiB activator; Provi 21.9 7.4E+02 0.016 24.0 26.8 20 231-250 168-187 (428)
378 PRK15396 murein lipoprotein; P 21.9 3.2E+02 0.0069 19.8 5.7 32 286-317 39-70 (78)
379 PRK15178 Vi polysaccharide exp 21.7 7.8E+02 0.017 24.2 21.5 86 241-349 291-385 (434)
380 PF10805 DUF2730: Protein of u 21.6 3.7E+02 0.0081 20.5 9.4 33 283-315 62-94 (106)
381 KOG0971|consensus 21.6 1.1E+03 0.023 25.8 26.8 37 286-323 462-502 (1243)
382 PF07439 DUF1515: Protein of u 21.4 3.9E+02 0.0085 20.7 8.0 46 286-332 40-85 (112)
383 PRK00409 recombination and DNA 21.0 1E+03 0.022 25.4 12.5 42 298-339 553-594 (782)
384 PF10372 YojJ: Bacterial membr 21.0 2E+02 0.0043 20.4 3.9 47 289-336 13-59 (70)
385 PRK14150 heat shock protein Gr 20.8 5.4E+02 0.012 22.1 8.8 48 286-333 34-81 (193)
386 TIGR00414 serS seryl-tRNA synt 20.5 8E+02 0.017 23.9 10.9 27 286-312 76-102 (418)
387 KOG0161|consensus 20.4 1.5E+03 0.033 27.1 24.2 178 127-334 958-1137(1930)
388 COG1382 GimC Prefoldin, chaper 20.3 4.4E+02 0.0095 20.8 11.0 29 286-314 77-105 (119)
389 PHA00489 scaffolding protein 20.1 3.7E+02 0.0081 19.9 6.1 50 209-258 14-63 (101)
390 PF06785 UPF0242: Uncharacteri 20.0 7.4E+02 0.016 23.4 14.3 43 216-258 184-226 (401)
No 1
>KOG2273|consensus
Probab=100.00 E-value=3e-40 Score=326.64 Aligned_cols=338 Identities=27% Similarity=0.449 Sum_probs=278.7
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccch-hhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLE-HLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSH 79 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~-~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~ 79 (357)
|.|....+.|+|||+||.|||+.|...|||++|||+|+|....+ .++.++++|+++||++|++||++|+.||+|++++.
T Consensus 140 ~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~ 219 (503)
T KOG2273|consen 140 PIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDSFSDEFIEKRRKALERFLNRLSLHPVLSNDED 219 (503)
T ss_pred CcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCCCCHHHHHHHHHHHHHHHHHHhcCcccccCHH
Confidence 67888899999999999999999999999999999999999855 44678999999999999999999999999999999
Q ss_pred hhccccccc----cchhhcccCCCCc-----cccch-hhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 80 AIIFLTAKL----AEFSMHKKHSPGL-----LNKMS-ESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIG 149 (357)
Q Consensus 80 ~~~FL~~~~----~~~~~~~k~~~~~-----~~~~~-~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~ 149 (357)
|..||+.+. ++...+.+++.+. ++... .....+...+.. +.+.+++|.+..+++++++..+..+.+.+
T Consensus 220 ~~~FL~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~e~~~~i~~l~~~l~~l~~~~ 297 (503)
T KOG2273|consen 220 FRLFLESDSKELPTDVNSRFKSGADLLSKQFFGETSSTDAVSLLPSFKK--FKESDKEFTEKKEKIDKLEQQLKKLSKQV 297 (503)
T ss_pred HHHHhcccccccchhhHHHHhcchhhccccccCcccchhhhhccccccc--cccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999994 2333334443332 22222 111111112222 67789999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhCCch---hHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhcchhHHHHHHHHHHHH
Q psy18202 150 TRLYKERKDYVSEAHQFAIVLNTWAGYEP---QLSSVIRQVSKAVDTTASLHKNLL-IEPFHEHNSHPMKDYLMYIDAVK 225 (357)
Q Consensus 150 ~~l~k~~~~l~~~~~~~~~~~~~l~~~E~---~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~a~k 225 (357)
.+++..+..++..+.++|.++..|+.++. .++..+..++.+...++...++ . .......+.+.+++|++++++++
T Consensus 298 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~l~~~i~~~~~~k 376 (503)
T KOG2273|consen 298 QRLVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSKLLEK-LTAEKDSKKLAEQLREYIRYLESVK 376 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765 6889999999999999988877 5 55556799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc-c--HHHHHHHHhhHhHHHHHH
Q psy18202 226 QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST-S--EDRLEKLSTAIPKLTSQL 302 (357)
Q Consensus 226 ~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~--~~ki~~l~~~i~~le~~~ 302 (357)
.++..|..++..++.++..+.+++....++...+. .+++... + ..++.+++.++..+++.+
T Consensus 377 ~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~----------------~~~~~~k~~~~~~e~~~~~~~~~~~~~~~ 440 (503)
T KOG2273|consen 377 SLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNR----------------SSFGFDKIDLAEKEIEKLEEKVNELEELL 440 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh----------------hhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988886620 0000000 1 155555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy18202 303 EICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCNC 357 (357)
Q Consensus 303 ~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~~ 357 (357)
...+..+..|++.+..|+.+|...+..||+.++..|++.+++++++++++|...+
T Consensus 441 ~~~~~~~~~i~~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~ 495 (503)
T KOG2273|consen 441 ALKELELDEISERIRAELERFEESRRQDFKESLKKYADLHVEYAEQILKAWEKFL 495 (503)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6555566699999999999999999999999999999999999999999998653
No 2
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=2.5e-38 Score=277.77 Aligned_cols=240 Identities=30% Similarity=0.557 Sum_probs=216.3
Q ss_pred CccccCChhhhccccccccchhhcccCCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 71 HPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGT 150 (357)
Q Consensus 71 hp~L~~~~~~~~FL~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~ 150 (357)
||+|+.++.|+.||++++|+...++++++|+++++++++.++.++|.+ ++.+|++|.++++|+++++.+|..+.+++.
T Consensus 1 HPvLs~~~~~~~FL~s~~W~~~~~~~~~~g~~~~~~d~~~~~~s~~~~--v~~~~~eF~Emkey~d~L~~~L~~ieki~~ 78 (243)
T cd07666 1 HPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSRMGQTVKAVASSVRG--VKNRPEEFTEMNEYVEAFSQKINVLDKISQ 78 (243)
T ss_pred CCccccChHHHHHHcCchHHHHHHHhcchhhhhhhHHHHHHHHHhccc--cCCCCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999988888999999999999999999998876 799999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy18202 151 RLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLAR 230 (357)
Q Consensus 151 ~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~ 230 (357)
||+++..++...+.+||.++..||++|++|..+|..+|.+++.++..+.. +...+...|.++|++|++|+.++|.+|+.
T Consensus 79 Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~-~~~~l~~~f~~~Lkeyv~y~~slK~vlk~ 157 (243)
T cd07666 79 RIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDK-RMKGLSEQLLPVIHEYVLYSETLMGVIKR 157 (243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777 55556679999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy18202 231 RDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQ 310 (357)
Q Consensus 231 R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~ 310 (357)
|+.++.+++...+++.++++++ +.++.+|.+++.+++
T Consensus 158 R~~~Q~~le~k~e~l~k~~~dr------------------------------------~~~~~ev~~~e~kve------- 194 (243)
T cd07666 158 RDQIQAELDSKVEALANKKADR------------------------------------DLLKEEIEKLEDKVE------- 194 (243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH------------------------------------HHHHHHHHHHHHHHH-------
Confidence 9999998888888877754433 244455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 311 TANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 311 ~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
..++.++.|++||+.+|..||+.+|.+|++.+|.+|++++..|+.+
T Consensus 195 ~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~f 240 (243)
T cd07666 195 CANNALKADWERWKQNMQTDLRSAFTDMAENNISYYEECLATWESF 240 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477799999999999999999999999999999999999999864
No 3
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=3.2e-36 Score=262.38 Aligned_cols=237 Identities=31% Similarity=0.544 Sum_probs=216.1
Q ss_pred CccccCChhhhccccccccchhhcccCCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 71 HPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGT 150 (357)
Q Consensus 71 hp~L~~~~~~~~FL~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~ 150 (357)
||+|+.++.|+.||+++ +|..++++++|..++++++...+++.+. ++.+|++|.++++|+++++..|..+.++..
T Consensus 1 HPvLs~~~~f~~FLts~--dw~a~~kq~~~~~~~~~~~~~~lna~~k---v~~~d~eF~e~~ey~d~l~~~l~~ieki~~ 75 (240)
T cd07667 1 HPVLSFNEHFNVFLTAK--DLNAYKKQGIALLSKMGESVKYVTGGYK---LRSRPLEFAAIGDYLDTFALKLGTIDRIAQ 75 (240)
T ss_pred CCccccChHHHHHHcch--hHHHHhhcccccccccchHHHHHHHHhc---cCCCChHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999 5688899998888888888877777664 899999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy18202 151 RLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLAR 230 (357)
Q Consensus 151 ~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~ 230 (357)
|++++..++..++.++|.+|..|+.+|+.|..+|..++.+++.++..+.+ +.+..+..|.++|++|..|+.++|.+|+.
T Consensus 76 Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~-l~~~~~~~yl~~Lke~~~Y~~slk~vlK~ 154 (240)
T cd07667 76 RIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEE-LTEDMTEDFLPVLREYILYSESMKNVLKK 154 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 87777779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy18202 231 RDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQ 310 (357)
Q Consensus 231 R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~ 310 (357)
|++++.+|+.+.+++.-+ ++++++|+.+|++++++ ++
T Consensus 155 RdqkQ~d~E~l~E~l~~r------------------------------------re~~~kLe~~ie~~~~~-------ve 191 (240)
T cd07667 155 RDQVQAEYEAKLEAVALR------------------------------------KEERPKVPTDVEKCQDR-------VE 191 (240)
T ss_pred HHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHH-------HH
Confidence 999999999998887321 35666666666555554 48
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 311 TANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 311 ~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
.|++.++.|+.+|+..|..||+..|.+||+.||+||++++++|+-+
T Consensus 192 ~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~ 237 (240)
T cd07667 192 CFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKCLTAWESI 237 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999864
No 4
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=100.00 E-value=2e-33 Score=247.31 Aligned_cols=226 Identities=19% Similarity=0.260 Sum_probs=210.8
Q ss_pred ccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-
Q psy18202 101 LLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ- 179 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~- 179 (357)
+++++++++.+++.. +.|+|+||.+.+.|++.|+.+|+.+.+.++.|+++|++|+.++.+||.++..||.+|.+
T Consensus 2 ~~~~~~~~~~~~~~k-----~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~ 76 (234)
T cd07664 2 MVNKAADAVNKMTIK-----MNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHT 76 (234)
T ss_pred hhhHHHHHHHhcccc-----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 456777777776544 78999999999999999999999999999999999999999999999999999999864
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 180 -LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 180 -l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
|+.+|..+|++.++++.++.+ .+.....+|+++|++|++.++|+|.+|.+|.+++..|++++.+|.++++.+.||..+
T Consensus 77 ~ls~~l~~laev~~ki~~~~~~-qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~ 155 (234)
T cd07664 77 ALSRALSQLAEVEEKIDQLHQD-QAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYA 155 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999888 776777899999999999999999999999999999999999999999999999654
Q ss_pred CCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 259 DSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
+ .++|++.++.+|.+++.++..++.+|+.|++.++.|+.||+.+|..||+.+|..|
T Consensus 156 --~----------------------k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~f 211 (234)
T cd07664 156 --N----------------------KPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKY 211 (234)
T ss_pred --C----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccc
Q psy18202 339 ADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 339 a~~qi~~~~~~~~~W~~~ 356 (357)
++.+|++.+++++.|+.+
T Consensus 212 les~ie~qke~ie~We~f 229 (234)
T cd07664 212 LESLVQTQQQLIKYWEAF 229 (234)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999865
No 5
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=100.00 E-value=3e-33 Score=245.01 Aligned_cols=226 Identities=18% Similarity=0.236 Sum_probs=210.9
Q ss_pred ccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-
Q psy18202 101 LLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ- 179 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~- 179 (357)
+++++++++..++.. +.|+|+||.+.+.|++.|+.+|+++.+.+..|+++|++|+..+.+||.++..||.+|.+
T Consensus 2 ~~~~~~d~~~~~~~k-----~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~ 76 (234)
T cd07665 2 MFNKATDAVSKMTIK-----MNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNT 76 (234)
T ss_pred hhhHHHHHHhccccC-----cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 356777777776544 78999999999999999999999999999999999999999999999999999999965
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 180 -LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 180 -l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
|+.+|..+|++.++++..++. .+.....+|+++|++|++.++|||.+|..|.+++..|++++.+|.+|+..+.+|..+
T Consensus 77 ~Ls~als~laev~~~i~~~~~~-qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~ 155 (234)
T cd07665 77 ALSRALSQLAEVEEKIEQLHQE-QANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWA 155 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888 776777899999999999999999999999999999999999999999999999643
Q ss_pred CCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 259 DSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
+ .++|+..++.+|.+++.+++.++.+|+.|++.|+.|+.||+.+|..||+.++..|
T Consensus 156 --~----------------------~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~f 211 (234)
T cd07665 156 --N----------------------KPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKY 211 (234)
T ss_pred --C----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccc
Q psy18202 339 ADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 339 a~~qi~~~~~~~~~W~~~ 356 (357)
++.+|+..+++++.|+.+
T Consensus 212 les~ie~qke~ie~We~f 229 (234)
T cd07665 212 LETLLHSQQQLVKYWEAF 229 (234)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 6
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=100.00 E-value=2.8e-33 Score=251.21 Aligned_cols=229 Identities=27% Similarity=0.423 Sum_probs=210.7
Q ss_pred CccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh
Q psy18202 100 GLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ 179 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~ 179 (357)
|+++++..++.+... + ++++|++|.+.++|++.|+.+|+.+.+.+.+|++++++++.++.+||.+|..||.+|.+
T Consensus 3 ~~~~~~~~s~~~~~~---~--~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~ 77 (236)
T PF09325_consen 3 GLFGKLFDSVSNSSP---K--MKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEE 77 (236)
T ss_pred hHHHHHHHHHHccCC---C--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 455566665555422 2 88999999999999999999999999999999999999999999999999999999977
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 180 --LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 180 --l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
++.++..+|++++.++.++.. ++......|+++|++|++|+.++|++|.+|..++.+|+++..+|++++++++++..
T Consensus 78 ~~l~~~l~~l~~~~~~~~~~~~~-~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~ 156 (236)
T PF09325_consen 78 KSLSEALSQLAEAFEKISELLEE-QANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKA 156 (236)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999887 77777789999999999999999999999999999999999999999999999886
Q ss_pred cCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 258 KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
.. + ..++|++.++.+|.+++..++.++.+++.|++.++.|+.||+..|..||+.+|..
T Consensus 157 ~~--~--------------------~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~ 214 (236)
T PF09325_consen 157 SG--K--------------------NRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEE 214 (236)
T ss_pred cc--h--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 51 0 1259999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc
Q psy18202 338 IADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 338 ~a~~qi~~~~~~~~~W~~~ 356 (357)
|++.||.++++++++|+.+
T Consensus 215 ~~~~~i~~~~~~~~~We~~ 233 (236)
T PF09325_consen 215 YAESQIEYQKKMLEAWETF 233 (236)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999865
No 7
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=100.00 E-value=1.8e-32 Score=241.32 Aligned_cols=211 Identities=17% Similarity=0.234 Sum_probs=199.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCc--hhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYE--PQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E--~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
|+|+||.+.+.|++.|+.+|+.+.+.++.++++|++++.++.+||.++..|+.+| ++|+.+|.++|++.++++..+..
T Consensus 1 e~D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 1 EPDEWFIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999998 45999999999999999999887
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
.+.....+|+++|++|++++.|+|++|.+|.+++..|++++.+|.+++++++||..+ ++
T Consensus 81 -~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~--~~------------------ 139 (216)
T cd07627 81 -QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQ--GK------------------ 139 (216)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC------------------
Confidence 777777899999999999999999999999999999999999999999999999754 11
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
..++|++.++.+|.+++.+++.++.+++.|++.++.|+.+|+..|..+|+.+|..|++.+|++++++++.|+.|
T Consensus 140 --s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 140 --TQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12599999999999999999999999999999999999999999999999999999999999999999999865
No 8
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=100.00 E-value=1.7e-31 Score=236.12 Aligned_cols=211 Identities=19% Similarity=0.280 Sum_probs=200.9
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~ 198 (357)
+.|+|+||.+.+.|++.|+.+|+.+.+.++.++++|++++..+.+||.++..||.+|.+ |+.+|.++|++.++++.+.
T Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~ 86 (224)
T cd07623 7 MDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLH 86 (224)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999999999999853 9999999999999999998
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
.. ++......|+++|++|++.+.++|++|..|..++..|++++.+|.++++.++||... +
T Consensus 87 ~~-qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~--~----------------- 146 (224)
T cd07623 87 GE-QADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELS--G----------------- 146 (224)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-----------------
Confidence 88 666777899999999999999999999999999999999999999999999999754 1
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
..+|+..++.+|.+++.++..++.+|+.|+..++.|+.||+..|..||+.+|..|++.+|++.+++++.|+.+
T Consensus 147 -----~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~ 219 (224)
T cd07623 147 -----RTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAF 219 (224)
T ss_pred -----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1489999999999999999999999999999999999999999999999999999999999999999999865
No 9
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=3.7e-31 Score=229.94 Aligned_cols=189 Identities=37% Similarity=0.617 Sum_probs=178.7
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
++.+|++|.++++|+++|+.+|..+.+++.++++++.+++.++.+||.+|+.|+.+|++|+.+|..+|.+.+.++..+..
T Consensus 9 ~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~ 88 (200)
T cd07624 9 LKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEV 88 (200)
T ss_pred hcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+.+.....|.+||++|.+|+.++|.+|+.|++++.+|+.+.++|.+|+.+
T Consensus 89 -l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~----------------------------- 138 (200)
T cd07624 89 -LLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE----------------------------- 138 (200)
T ss_pred -HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 77777779999999999999999999999999999999999999988765
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
++.+++.++++++.++..++.|+.||+..|..||+.+|.+||+.||+||+++++.|+.+
T Consensus 139 -----------------l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~ 197 (200)
T cd07624 139 -----------------LLKEVEKLQDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEV 197 (200)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23446778889999999999999999999999999999999999999999999999864
No 10
>KOG1660|consensus
Probab=100.00 E-value=1.6e-32 Score=243.30 Aligned_cols=307 Identities=19% Similarity=0.295 Sum_probs=255.1
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHH--hCCCCCCCCCCCccccchh---h-------hc------------CCHHHHH-
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVE--TLPSHIIPPLPEKHSLLEH---L-------NR------------YSKEFIL- 55 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~--~~p~~~iPplP~K~~~~~~---~-------~~------------~~~~fie- 55 (357)
|.|. .++.|.|.+.+|+|||..+.. +|.|+||||-|+++.+... + +. ...+|++
T Consensus 51 p~~~-~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~KmK~elEaeyLA~ 129 (399)
T KOG1660|consen 51 PLFM-PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFLKMKQELEAEYLAR 129 (399)
T ss_pred cCCC-CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHHHHHHHhhhHHHHH
Confidence 7888 899999999999999999886 7889999999999987321 0 11 1234443
Q ss_pred --HHHHHHHHHHHHHHcCccccCChhhhccccccccchhhcccCC----CCccccchhhhhhhhhhhccccccCCChhHH
Q psy18202 56 --CRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHS----PGLLNKMSESFYNLTNIYTTMSLRHHHSEFE 129 (357)
Q Consensus 56 --~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~~~~~~~~~~~k~~----~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~ 129 (357)
+-..+.+.||+||+.||+|+.+..|+.||+.+. ++....|+. +|+++++..+...+..+-. +++.|.+|.
T Consensus 130 fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~q-dLsvr~KNkkE~~~~f~k~~~kSAdeillSg~---lkdVddFfe 205 (399)
T KOG1660|consen 130 FKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYDQ-DLSVRGKNKKESFGGFLKRFVKSADEILLSGK---LKDVDDFFE 205 (399)
T ss_pred HHHhhccHHHHHHHHhcCCeeecccchhhhhhhcc-cccccccchhhhhhHHHHHHhhhhhheeeecc---eeehhHHHH
Confidence 446788999999999999999999999999984 677766653 5566666655554433211 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
..+.|+..|...++...-.++++...++..+.++..+|..++.++.-+.. +...+-..+..++.++.+... ...+.+.
T Consensus 206 ~ek~fl~ey~~~ikdas~kadKmt~~hK~~~ddy~~i~~~~~~lg~ed~~~v~~~~l~~~e~f~~~~k~e~R-vs~dedl 284 (399)
T KOG1660|consen 206 TEKNFLKEYHFRIKDASLKADKLTRAHKSVGDDYDQIGNRLNRLGEEDAANVKKFQLKEAEYFEEESKVERR-VSSDEDL 284 (399)
T ss_pred hhhHHHHHHhhHHhhhccchHHhhhhcccccccHHHHHHHHHHhhhhhhcccceeeecchhHHHHHHhHhhh-hchHHHH
Confidence 99999999999999999999999999999999999999999998766543 556666778888888887655 6666778
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHH
Q psy18202 209 HNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRL 288 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki 288 (357)
.|.+.|++|.+...+.++++.+|.+.+.+|++++++|+|++++-.
T Consensus 285 kL~d~l~yy~r~~~aakdllyRr~Rcl~~ye~ank~l~kar~knk----------------------------------- 329 (399)
T KOG1660|consen 285 KLGDTLRYYDRDSCAAKDLLYRRERCLADYEAANKNLEKARAKNK----------------------------------- 329 (399)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccc-----------------------------------
Confidence 999999999999999999999999999999999999998876422
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 289 EKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 289 ~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
+|..+|.....+..+|+.|++..++|+..|+..|.+.|+..|.+.++++|.+++..++.-
T Consensus 330 -----dv~~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~knl~el~eleikhak~~~~ll 389 (399)
T KOG1660|consen 330 -----DVHAAEAAQQEACQKFESISESAKEELIGFKTRRVAAFKKNLVELSELEIKHAKTNYSLL 389 (399)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHH
Confidence 233456667788899999999999999999999999999999999999999998877653
No 11
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.97 E-value=3.7e-29 Score=221.64 Aligned_cols=210 Identities=25% Similarity=0.364 Sum_probs=198.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh----HHHHHHHHHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ----LSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~----l~~~l~~~~~~~~~~~~~~ 198 (357)
++|++|.++++|++.++.+++.+.+.+.++++++.+++.++.+||.+|..|+..|.. |+.++..+|++++.++...
T Consensus 1 e~d~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (218)
T cd07596 1 EEDQEFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLS 80 (218)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999998854 9999999999999999998
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
.. ++......|+++|++|.+++.++|++|.+|+.++.+|+.+.+.+.++++++++|..++
T Consensus 81 ~~-~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~------------------- 140 (218)
T cd07596 81 EA-QANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAP------------------- 140 (218)
T ss_pred HH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------------------
Confidence 87 7777778999999999999999999999999999999999999999999999998751
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
...++||+.++.+|.+++.+++.++.+++.|+..+..|+.+|+..+..+|+.+|..|++.||+|+++++++|+.
T Consensus 141 ---~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~ 214 (218)
T cd07596 141 ---GIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWES 214 (218)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 02358999999999999999999999999999999999999999999999999999999999999999999975
No 12
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=99.97 E-value=5.5e-29 Score=212.35 Aligned_cols=210 Identities=14% Similarity=0.213 Sum_probs=191.8
Q ss_pred CccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh
Q psy18202 100 GLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ 179 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~ 179 (357)
||+++++.+...+.. .+ ++|.|+||++.+.|+..|+.+|+++...+++++.+|++++.++..||.++..|+.+|..
T Consensus 1 ~~~~~~~k~~de~~~--~~--~kd~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t 76 (218)
T cd07662 1 DFFKNVVKSADGVIV--SG--VKDVDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQDST 76 (218)
T ss_pred CHHHhhhhhhhHHHH--hc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 345556555554433 23 89999999999999999999999999999999999999999999999999999999866
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 180 -LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 180 -l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
|+.+|.+++++++++..+... ++.+.+.+|++.|++|++++.|+|++|.+|.+++.+|++++++|.|+|..-
T Consensus 77 ~L~~~l~~laev~eki~~l~~~-~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~------ 149 (218)
T cd07662 77 DICKFFLKVSELFDKTRKIEAR-VAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKN------ 149 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------
Confidence 999999999999999999887 777778899999999999999999999999999999999999999998861
Q ss_pred CCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 259 DSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
.+|.++|.++++++.+|+.|++.++.|+.||+..|..+|+++|.+|
T Consensus 150 ----------------------------------kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y 195 (218)
T cd07662 150 ----------------------------------KDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVEL 195 (218)
T ss_pred ----------------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q psy18202 339 ADQQIAYYQQRSDRGN 354 (357)
Q Consensus 339 a~~qi~~~~~~~~~W~ 354 (357)
++.+|.+++..++.|.
T Consensus 196 ~E~~lkhak~~~~~~~ 211 (218)
T cd07662 196 AELELKHAKGNLQLLQ 211 (218)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999983
No 13
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=99.97 E-value=5.4e-29 Score=215.19 Aligned_cols=210 Identities=17% Similarity=0.233 Sum_probs=188.5
Q ss_pred Cccccchhhhh-hhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCch
Q psy18202 100 GLLNKMSESFY-NLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEP 178 (357)
Q Consensus 100 ~~~~~~~~~~~-~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~ 178 (357)
|+++.++.+.. .+.. .+ ++|.|+||++.+.|+..|+.+|+.+...+++++.+|++++.++..||.++..||.+|.
T Consensus 1 g~~k~~~k~~D~~v~~--~~--~~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~ 76 (219)
T cd07621 1 GFLKSISKSADEELLL--SG--QKDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEP 76 (219)
T ss_pred CHHHHhHHhhhHHHHc--CC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44555554444 2221 13 8999999999999999999999999999999999999999999999999999999987
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 179 Q-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 179 ~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
. |+.++.++|+.++++..+... ++.+.+.+|+++|++|+++++|+|++|.+|.+++.+|++++++|+|+++.-
T Consensus 77 t~L~~~ls~lae~~ek~~~l~~r-~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k~----- 150 (219)
T cd07621 77 TPLDKFLLKVAETFEKLRKLEGR-VASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARAKN----- 150 (219)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhch-----
Confidence 6 999999999999999999887 777777899999999999999999999999999999999999999998621
Q ss_pred cCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 258 KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
.+|.++|.++++++.+|+.|++.++.|+.||+..|..+|+..|.+
T Consensus 151 -----------------------------------~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve 195 (219)
T cd07621 151 -----------------------------------KDVHAAEAAQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVE 195 (219)
T ss_pred -----------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245567778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q psy18202 338 IADQQIAYYQQRSDRGN 354 (357)
Q Consensus 338 ~a~~qi~~~~~~~~~W~ 354 (357)
|++.+|.+++..+++|.
T Consensus 196 ~aE~~ik~Ak~~~~~l~ 212 (219)
T cd07621 196 LAELEIKHAKAQIQLLK 212 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999983
No 14
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=99.97 E-value=1.6e-28 Score=211.13 Aligned_cols=210 Identities=15% Similarity=0.270 Sum_probs=189.3
Q ss_pred CccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh
Q psy18202 100 GLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ 179 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~ 179 (357)
|++++++.++..+.- .| ++|.|+||++.+.|+..|+.+|+.+...+++++++|++++.++..||.++..++..|+.
T Consensus 1 ~~~~~~~k~~~e~~~--~~--~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t 76 (218)
T cd07663 1 GFFKNMVKSADEVLF--SG--VKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPT 76 (218)
T ss_pred CHHHHHHHhHHHHHH--hc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 466777777766543 34 89999999999999999999999999999999999999999999999999988644443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 180 -LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 180 -l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
|+.+|.++|+.++++..+... ++.+.+.+|+++|++|+++++|+|++|.+|.+++.+|++++.+|.|++...
T Consensus 77 ~L~kals~lae~~Ek~~~l~~r-~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k~------ 149 (218)
T cd07663 77 VIKKYLLKVAELFEKLRKVEDR-VASDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNKALDKARLKS------ 149 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------
Confidence 999999999999999999877 777777899999999999999999999999999999999999999998421
Q ss_pred CCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 259 DSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
.+|.++|.++..++.+|+.|++.++.|+.||+..|..+|+..|.+|
T Consensus 150 ----------------------------------kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~ 195 (218)
T cd07663 150 ----------------------------------KDVKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEM 195 (218)
T ss_pred ----------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356678888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q psy18202 339 ADQQIAYYQQRSDRGN 354 (357)
Q Consensus 339 a~~qi~~~~~~~~~W~ 354 (357)
++.+|.+++..++.|.
T Consensus 196 ~E~~ik~ak~~~~~~~ 211 (218)
T cd07663 196 TELEIKHAKNNVSLLQ 211 (218)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999883
No 15
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=99.97 E-value=6e-28 Score=208.48 Aligned_cols=187 Identities=20% Similarity=0.349 Sum_probs=174.9
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
++.+|++|.++++|++.++.+|..+.+++.|++++..++..++.+||.+|+.|+.+|+.|..+|..+|++++.++..++.
T Consensus 9 ~~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~ 88 (201)
T cd07622 9 LRNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDN 88 (201)
T ss_pred CCCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
..+. +..|.+||++|..|+.++|.+|+.|+.++.+++.+.+.|.+++++
T Consensus 89 -~~~~-~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~----------------------------- 137 (201)
T cd07622 89 -GLED-EELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ----------------------------- 137 (201)
T ss_pred -HHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 4443 368999999999999999999999999999999999888877443
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
++.+++.++..++.+++.++.|+.||+..|..||+.+|.+||..||+||++++++|+-
T Consensus 138 -----------------l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~ 195 (201)
T cd07622 138 -----------------GEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTN 195 (201)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999999999999999964
No 16
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.96 E-value=3.5e-27 Score=205.95 Aligned_cols=212 Identities=14% Similarity=0.141 Sum_probs=200.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEP--QLSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~--~l~~~l~~~~~~~~~~~~~~ 198 (357)
|.|+.+++.+++.-++.++...+++...++++++++++|+.+..+||.++..|+.+|. +|+.++..+|+..+.++++.
T Consensus 13 p~d~~~el~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl~ 92 (230)
T cd07625 13 PYDEYTELAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDID 92 (230)
T ss_pred CCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhHH
Confidence 7789999999999999999999999999999999999999999999999999999995 49999999999999999997
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
.. .+......|+++|.+|++.+.++|++|..|..++.+|++++.++.+|+...++|..++
T Consensus 93 ~~-QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~------------------- 152 (230)
T cd07625 93 SI-QATVDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKR------------------- 152 (230)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------
Confidence 76 6666778999999999999999999999999999999999999999999999998651
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
..+++|++.+..++++++..++.+..+++.|+.+|..|+.||..++..||+.+|.+|+..+|++.++.+..|+.
T Consensus 153 ---~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~ 226 (230)
T cd07625 153 ---DINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLER 226 (230)
T ss_pred ---CCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12368999999999999999999999999999999999999999999999999999999999999999999975
No 17
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.96 E-value=9.3e-28 Score=205.57 Aligned_cols=181 Identities=20% Similarity=0.272 Sum_probs=170.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~ 201 (357)
++|++|.++++|+++|+.+|..+.+++.|++++..+++.++.+||.+|+.|+.+|++ |+.+|..+|.+++.++..+.+
T Consensus 1 ~~d~~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~- 79 (185)
T cd07628 1 KPDKEFLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRV- 79 (185)
T ss_pred CCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHH-
Confidence 478999999999999999999999999999999999999999999999999999999 999999999999999999888
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 202 LIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
+++.++..|.+||++|..|+.++|.+|+.|++++.+|+.+.++|
T Consensus 80 l~~~~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~e~l------------------------------------ 123 (185)
T cd07628 80 LNKYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELSDYL------------------------------------ 123 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------------------------------
Confidence 88877789999999999999999999999999999999988777
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
++.+++.++..++.+++.+..|+.||++.|..||+.+|.+||..||+||+++++.|+-+
T Consensus 124 ----------------l~~~ve~a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~ 182 (185)
T cd07628 124 ----------------LTDEVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKV 182 (185)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12346788889999999999999999999999999999999999999999999999753
No 18
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.96 E-value=5e-27 Score=201.89 Aligned_cols=189 Identities=13% Similarity=0.177 Sum_probs=175.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCch----hHHHHHHHHHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEP----QLSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~----~l~~~l~~~~~~~~~~~~~~ 198 (357)
|.|+||.+.+.|+..|+.+|+.+.+.++.|+++|++++.++.+||.++..|+.+|. .|+.+|..++++++.+..+.
T Consensus 1 d~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~ 80 (198)
T cd07630 1 DVDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENI 80 (198)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999983 47999999999999999998
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
.. ++.+...+|+++|++|+++++++|++|.+|.+++.+|++++++|.|++.++
T Consensus 81 ~~-~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~k-------------------------- 133 (198)
T cd07630 81 EV-VAGNNENTLGLTLDLYSRYSESEKDMLFRRTCKLIEFENASKALEKAKPQK-------------------------- 133 (198)
T ss_pred HH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh--------------------------
Confidence 87 777788899999999999999999999999999999999999999865432
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
++.+|.+++.++.+|+.|+..++.||.||+..|..+|+..|..|++.+|.+.+..+++|.
T Consensus 134 ----------------~~~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~ 193 (198)
T cd07630 134 ----------------KEQAEEAKKKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLT 193 (198)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123567778899999999999999999999999999999999999999999999999994
No 19
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=99.95 E-value=5.1e-25 Score=213.60 Aligned_cols=332 Identities=23% Similarity=0.310 Sum_probs=201.2
Q ss_pred CCCCCCcc---eeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchh-hhcCCHHHHHHHHHHHHHHHHHHHcCccccC
Q psy18202 1 PEFPDTEC---IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEH-LNRYSKEFILCRMKLLDQFLRRVTSHPVLSV 76 (357)
Q Consensus 1 p~f~~~~~---~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~ 76 (357)
|-|..... +|.||||||.|||..|...||+|+|||+|+|+....+ .++|+++|++.|+.+|+.|+++++.||.|.+
T Consensus 163 ~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~~~~~~~~~~~i~~r~~~L~~~~~~~~~hp~lsn 242 (524)
T COG5391 163 PSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYYGDRFSDEFIEERRQSLQNFLRRVSTHPLLSN 242 (524)
T ss_pred ccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhccccccccchHHHHHHHHHHHHHHHHHhcCccccc
Confidence 55677777 9999999999999999999999999999999987432 3689999999999999999999999999999
Q ss_pred Chhhhccccccccchhhccc-------CCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 77 NSHAIIFLTAKLAEFSMHKK-------HSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIG 149 (357)
Q Consensus 77 ~~~~~~FL~~~~~~~~~~~k-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~ 149 (357)
+. ...+| ..+.+ +.....+.+... .... ....+.+..++.....+....+.+.....
T Consensus 243 ~~------~~~~~--~~~~~~~~~~~~~~~s~~~~~~~d---~~~t-----~~~~~~~~~el~~~~s~~~~~~~s~~~~~ 306 (524)
T COG5391 243 YK------NSKSW--ESHSTLLSSFIENRKSVPTPLSLD---LTST-----TQELDMERKELNESTSKAIHNILSIFSLF 306 (524)
T ss_pred cc------ccccH--hhhhHHHHHhhhcccccCcccccc---hhhh-----hhhchhhhhhhhhhHHHHHHhhhhHHHHH
Confidence 77 22222 21111 111011111110 0001 22333344444444444444444444444
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhCCchh----HHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhcchhHHHHHHHH
Q psy18202 150 TRLYKERKDYVSEAHQFAIVLNTWAGYEPQ----LSSVIRQVSKAVDTTA----SLHKNLLIEPFHEHNSHPMKDYLMYI 221 (357)
Q Consensus 150 ~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~----l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~ 221 (357)
+.+..........+..+...+..+.....+ ....+.......-... ..... .....+..+...++..-.+.
T Consensus 307 ~~i~~~~~~~~e~~t~l~~~~~~l~~~~~~~~~~~~k~~~~~~n~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~e~~~ 385 (524)
T COG5391 307 EKILIQLESEEESLTRLLESLNNLLLLVLNFSGVFAKRLEQNQNSILNEGVVQAETLRS-SLKELLTQLQDEIKSRESLI 385 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhh
Confidence 444444444444444444444333222211 1111111111000000 00000 11112234444555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC-cccCCCcccccCCccH-HHHHHHHhhHhHHH
Q psy18202 222 DAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSST-ATSSTNSYSLWKSTSE-DRLEKLSTAIPKLT 299 (357)
Q Consensus 222 ~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~-~ki~~l~~~i~~le 299 (357)
.....++..++..+...+.....+.+...+......+ .+..++.+ .+..+.++. .-.++ .++..|+.++..++
T Consensus 386 ~t~~~l~k~~~~~~~~~~~~~~~~~~~s~~~~~~~~~---~~~~t~~~~~~~~~~~~~--~e~sr~k~~~~Lqq~~~~l~ 460 (524)
T COG5391 386 LTDSNLEKLTDQNLEDVEELSRSLRKNSSQRAVVSQQ---PEGLTSFSKLSYKLRDFV--QEKSRSKSIESLQQDKEKLE 460 (524)
T ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhhhhhhhhhhcc---cccccccccccccccccc--cchhHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555554444433222211 11111111 111222222 12233 88999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 300 SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 300 ~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
+.+..+..++..|++.+..|++.|...+..++..++..|+++++++++..+++|.
T Consensus 461 ~~L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~~hie~~~~~Le~W~ 515 (524)
T COG5391 461 EQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEENLEIWK 515 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999996
No 20
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.95 E-value=3.3e-28 Score=191.46 Aligned_cols=86 Identities=48% Similarity=0.851 Sum_probs=81.6
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|+.+++.|+|||+||+|||+.|...|||++|||||+|..+.++.++++++||++|+++|+.||++|+.||+|+.|++|
T Consensus 30 ~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~ri~~hp~L~~s~~~ 109 (116)
T cd07284 30 SEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNEDFIETRRKALHKFLNRIADHPTLTFNEDF 109 (116)
T ss_pred CCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCHHHHHHHHHHHHHHHHHHHcCcccccChHH
Confidence 67899999999999999999999999999999999999998766567789999999999999999999999999999999
Q ss_pred hccccc
Q psy18202 81 IIFLTA 86 (357)
Q Consensus 81 ~~FL~~ 86 (357)
+.||+.
T Consensus 110 ~~FL~~ 115 (116)
T cd07284 110 KIFLTA 115 (116)
T ss_pred HHhhcC
Confidence 999986
No 21
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.95 E-value=8.5e-28 Score=189.31 Aligned_cols=86 Identities=55% Similarity=0.920 Sum_probs=81.4
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|+..+|.|+|||+||+|||+.|...||+++|||||+|..+.+..++++++||++||++|+.||++|+.||+|+.|++|
T Consensus 30 ~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp~L~~s~~~ 109 (116)
T cd07283 30 TEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHF 109 (116)
T ss_pred CCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHH
Confidence 67889999999999999999999999999999999999998765567889999999999999999999999999999999
Q ss_pred hccccc
Q psy18202 81 IIFLTA 86 (357)
Q Consensus 81 ~~FL~~ 86 (357)
+.||+.
T Consensus 110 ~~FLt~ 115 (116)
T cd07283 110 NVFLTA 115 (116)
T ss_pred HHhhcC
Confidence 999986
No 22
>KOG2528|consensus
Probab=99.94 E-value=1.5e-26 Score=211.94 Aligned_cols=218 Identities=20% Similarity=0.328 Sum_probs=169.2
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+...|.|||.+|.|||++|..+||.+.|||||+|++. ++|.++||++||+.|+-|++++++||+|++++.|+.||+
T Consensus 215 t~~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~----gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~ 290 (490)
T KOG2528|consen 215 TNISVSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVT----GRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLT 290 (490)
T ss_pred cCcchhhcccccHHHHHHHHhhcccccCCCCCccccc----cchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHc
Confidence 4567999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cc-c-cchhhccc--CCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHH
Q psy18202 86 AK-L-AEFSMHKK--HSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERK-DYV 160 (357)
Q Consensus 86 ~~-~-~~~~~~~k--~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~-~l~ 160 (357)
++ + ..|...++ .+..+.+.+--++. + . .+.+.+.+...+.++.+++..++.+..|......+.++.- .+-
T Consensus 291 c~~dek~Wk~GKRkAEkDe~~g~~~~~~~-p-~---~ld~~~ve~~ve~~~~f~k~md~~~~~l~~~~~~~~k~~~~~~k 365 (490)
T KOG2528|consen 291 CPTDEKAWKQGKRKAEKDELVGNFLLTIS-P-A---PLDLQEVEMQVERFKRFTKKMDDAVRQLNTTANEFWKRKVGGFK 365 (490)
T ss_pred CCcccccccccccccccCCcccceeeccC-C-c---ccchHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHhcccch
Confidence 96 4 23554433 22222222211111 1 1 1226677778888899999999999888887777775552 244
Q ss_pred HHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy18202 161 SEAHQFAIVLNTWAGY--------EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRD 232 (357)
Q Consensus 161 ~~~~~~~~~~~~l~~~--------E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~ 232 (357)
..+..+|.+|..|+.. +..|+.++...|+.+..+++++.++-..++ ..+++.|..|.+.+..+-+++....
T Consensus 366 ke~qk~g~a~~~l~~~f~~d~~~~s~~L~~ai~~~g~~y~~Ig~lfa~qpk~Dl-~p~~d~l~~y~G~l~nfpDII~~hK 444 (490)
T KOG2528|consen 366 KEYQKMGSAFQTLAQAFEIDPTVDSRPLNEAIGLTGDAYHEIGELFAEQPKQDL-DPVMDLLVLYQGHLQNFPDIIHVHK 444 (490)
T ss_pred HHHHHHHHHHHHHHHhhhcCccccccchhhhhhhhhHHHHHHHHHhhcccccch-hHHHHHHHHhhcccccccchhhhhH
Confidence 5556666666666542 345999999999999999999877333333 5899999999999999999998775
Q ss_pred H
Q psy18202 233 V 233 (357)
Q Consensus 233 ~ 233 (357)
.
T Consensus 445 ~ 445 (490)
T KOG2528|consen 445 G 445 (490)
T ss_pred H
Confidence 4
No 23
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.94 E-value=3.4e-27 Score=187.01 Aligned_cols=79 Identities=37% Similarity=0.574 Sum_probs=76.0
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+++.|+||||||.|||+.|...|||++|||||+|..+ ++|+++||++|+++|+.||++|+.||+|+.|+.|+.||+
T Consensus 30 ~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~----g~f~~~FIe~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~ 105 (127)
T cd07286 30 TGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQAT----GRFEEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFLT 105 (127)
T ss_pred CceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcC----CCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHHhc
Confidence 6789999999999999999999999999999999987 789999999999999999999999999999999999999
Q ss_pred ccc
Q psy18202 86 AKL 88 (357)
Q Consensus 86 ~~~ 88 (357)
.+.
T Consensus 106 ~~~ 108 (127)
T cd07286 106 CPS 108 (127)
T ss_pred CCc
Confidence 873
No 24
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.94 E-value=7.1e-27 Score=187.30 Aligned_cols=84 Identities=25% Similarity=0.388 Sum_probs=79.4
Q ss_pred CCCCCCcc-eeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChh
Q psy18202 1 PEFPDTEC-IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSH 79 (357)
Q Consensus 1 p~f~~~~~-~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~ 79 (357)
|.|+++++ .|+|||+||+|||++|..++|||+|||||+|.+.. +.++.+|+++|+.+||+||+||+.||+|..|++
T Consensus 56 p~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~~---~~~~~E~~~~rr~~LqrfL~RV~~hP~L~~d~~ 132 (140)
T cd06891 56 PTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPSTSY---GSNNEEDARKLKANLQRWFNRVCSDPILIRDEE 132 (140)
T ss_pred cccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCccccC---CCCCHHHHHHHHHHHHHHHHHHhCChhhccCHH
Confidence 78999999 79999999999999999999999999999999763 677899999999999999999999999999999
Q ss_pred hhcccccc
Q psy18202 80 AIIFLTAK 87 (357)
Q Consensus 80 ~~~FL~~~ 87 (357)
|+.||+++
T Consensus 133 l~~FLEsd 140 (140)
T cd06891 133 LRFFIESD 140 (140)
T ss_pred HHHHhccC
Confidence 99999864
No 25
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.94 E-value=1.4e-26 Score=183.35 Aligned_cols=87 Identities=57% Similarity=0.997 Sum_probs=81.3
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|+.+.|.|+|||+||.|||+.|...|||++|||||+|..+.+..++++++||++||++||.||++|+.||.|++|+.|
T Consensus 30 ~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~hp~l~~s~~l 109 (116)
T cd06860 30 SEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSPEFVATRMRALHKFLNRIVEHPVLSFNEHL 109 (116)
T ss_pred CCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCHHHHHHHHHHHHHHHHHHHcCcccccCcHH
Confidence 56888999999999999999999999999999999999998655557899999999999999999999999999999999
Q ss_pred hcccccc
Q psy18202 81 IIFLTAK 87 (357)
Q Consensus 81 ~~FL~~~ 87 (357)
+.||++.
T Consensus 110 ~~FLt~~ 116 (116)
T cd06860 110 KVFLTAK 116 (116)
T ss_pred HHhhcCC
Confidence 9999863
No 26
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.93 E-value=4.1e-24 Score=183.10 Aligned_cols=179 Identities=18% Similarity=0.278 Sum_probs=160.4
Q ss_pred CCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKIS-AFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLHK 199 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~-~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~~ 199 (357)
++|++|.+++.++++|+..|. .+.++..++.++..+++.++.+||.+|+.||..|++ |+.+|..+|.+++.++...+
T Consensus 1 ~~d~~F~~~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~ 80 (187)
T cd07629 1 EPDDEFTDIEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATE 80 (187)
T ss_pred CcchHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999995 899999999999999999999999999999999964 89999999999999999988
Q ss_pred HHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccc
Q psy18202 200 NLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSL 279 (357)
Q Consensus 200 ~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~ 279 (357)
. +.+.+...|.+||++|+.|+.+++.+|+.|+.++.+|+.+.+.| .+.
T Consensus 81 ~-l~~~l~~~f~EpL~E~~~y~~s~k~vlk~R~~K~~Q~e~l~~~L------~e~------------------------- 128 (187)
T cd07629 81 A-LVGSLYYNINEPLSESAQFAGVVRELLKYRKLKHVQYEMTKDSL------LES------------------------- 128 (187)
T ss_pred H-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-------------------------
Confidence 8 77888889999999999999999999999999999999888877 110
Q ss_pred cCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 280 WKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTA-NNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 280 ~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i-~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
..+ +..++..+ +..+..|++||+++|..||+.+|.+||..|++|+++++++|..
T Consensus 129 ---------------------~~~-~~~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~~~~~W~~ 183 (187)
T cd07629 129 ---------------------ALV-AASDDLVISSTIKQKDLPRFQREREADLREILKNYSKYHKDWAKQNLEAWKE 183 (187)
T ss_pred ---------------------HHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012 22345556 5888899999999999999999999999999999999999964
No 27
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.93 E-value=8.6e-27 Score=183.35 Aligned_cols=87 Identities=34% Similarity=0.636 Sum_probs=74.0
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHH--hCCCCCCCCCCCccccchhh----------hcC-CHHHHHHH----------
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVE--TLPSHIIPPLPEKHSLLEHL----------NRY-SKEFILCR---------- 57 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~--~~p~~~iPplP~K~~~~~~~----------~~~-~~~fie~R---------- 57 (357)
|.|++.+++|+|||+||.|||++|.. +||||||||+|+|+.+.+.. +.+ ..+|++.|
T Consensus 28 ~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k~~kl~~~~~~~~~eef~~~r~~~~~~~~~~ 107 (141)
T cd07291 28 PSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAV 107 (141)
T ss_pred ccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHhhhhcccCcccccHHHHHHHHHHhhhhhhhH
Confidence 78999999999999999999999997 78999999999999873311 111 35777744
Q ss_pred ----HHHHHHHHHHHHcCccccCChhhhcccccc
Q psy18202 58 ----MKLLDQFLRRVTSHPVLSVNSHAIIFLTAK 87 (357)
Q Consensus 58 ----~~~L~~fL~~i~~hp~L~~~~~~~~FL~~~ 87 (357)
+++||+||+||++||+|++|+.|+.||+.+
T Consensus 108 ~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~ 141 (141)
T cd07291 108 FKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD 141 (141)
T ss_pred HHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence 577999999999999999999999999863
No 28
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.93 E-value=3.3e-26 Score=179.71 Aligned_cols=87 Identities=32% Similarity=0.624 Sum_probs=73.0
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHh--CCCCCCCCCCCccccch---hhh-------cCC-HHHH-------------
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVET--LPSHIIPPLPEKHSLLE---HLN-------RYS-KEFI------------- 54 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~--~p~~~iPplP~K~~~~~---~~~-------~~~-~~fi------------- 54 (357)
|.|++++++|+|||+||.|||++|..+ |||+||||+|+|+.+.. .++ .+. .+|.
T Consensus 28 p~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k~~klg~~~~~~~~ee~~~~~~~l~~~~~~~ 107 (141)
T cd07292 28 PNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAI 107 (141)
T ss_pred cccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHHHHhhccccccchHHHHHHHHHHhHHHHHHH
Confidence 789999999999999999999999965 89999999999997621 111 122 2343
Q ss_pred -HHHHHHHHHHHHHHHcCccccCChhhhcccccc
Q psy18202 55 -LCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAK 87 (357)
Q Consensus 55 -e~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~~~ 87 (357)
.+|+++||+||+||++||+|++|..|+.||+.+
T Consensus 108 ~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~~ 141 (141)
T cd07292 108 FKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYN 141 (141)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCcchhheeccC
Confidence 277899999999999999999999999999853
No 29
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.93 E-value=6e-26 Score=179.42 Aligned_cols=85 Identities=33% Similarity=0.568 Sum_probs=76.9
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCC-CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPS-HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~-~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
.++++|+||||||.|||+.|...||+ ++|||||+|..+ ++|+++||++|+++|++||++|++||+|+.|+.|+.|
T Consensus 29 ~~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~----g~f~~~FIe~Rr~~Le~FL~ri~~hP~L~~~~~l~~F 104 (126)
T cd07285 29 NTNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVT----GRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQF 104 (126)
T ss_pred cCCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCcccc----CCCCHHHHHHHHHHHHHHHHHHHcCcCcCCCcHHHHH
Confidence 46789999999999999999999975 459999999987 7899999999999999999999999999999999999
Q ss_pred cccccc-chhh
Q psy18202 84 LTAKLA-EFSM 93 (357)
Q Consensus 84 L~~~~~-~~~~ 93 (357)
|+.++. +|..
T Consensus 105 L~~~~~~~w~~ 115 (126)
T cd07285 105 LNFRDEKEWKT 115 (126)
T ss_pred hCCCCHHHHHh
Confidence 998752 3443
No 30
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.92 E-value=1.6e-25 Score=178.89 Aligned_cols=87 Identities=34% Similarity=0.542 Sum_probs=78.2
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCC--CCCCCCCCCccccch------hhhcCCHHHHHHHHHHHHHHHHHHHcCc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLP--SHIIPPLPEKHSLLE------HLNRYSKEFILCRMKLLDQFLRRVTSHP 72 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p--~~~iPplP~K~~~~~------~~~~~~~~fie~R~~~L~~fL~~i~~hp 72 (357)
|.|+.++|.|+|||+||+|||+.|...|| |++|||+|+|..+.. ..+.++++||++||++|+.||++|++||
T Consensus 30 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p 109 (124)
T cd07282 30 SMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHP 109 (124)
T ss_pred CccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCc
Confidence 57889999999999999999999999987 899999999997621 1134689999999999999999999999
Q ss_pred cccCChhhhcccccc
Q psy18202 73 VLSVNSHAIIFLTAK 87 (357)
Q Consensus 73 ~L~~~~~~~~FL~~~ 87 (357)
.|++|+.|+.||++.
T Consensus 110 ~l~~s~~~~~FL~~~ 124 (124)
T cd07282 110 TLLQDPDLRQFLESS 124 (124)
T ss_pred ccccChHHHHhhcCC
Confidence 999999999999863
No 31
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.92 E-value=2.1e-25 Score=177.56 Aligned_cols=86 Identities=35% Similarity=0.597 Sum_probs=78.1
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchh-----hhcCCHHHHHHHHHHHHHHHHHHHcCcccc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEH-----LNRYSKEFILCRMKLLDQFLRRVTSHPVLS 75 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-----~~~~~~~fie~R~~~L~~fL~~i~~hp~L~ 75 (357)
|.|...++.|+|||+||.|||+.|.. +||++|||||+|..+... .++++++|+++||++|+.||++|++||+|+
T Consensus 31 p~~~~~~~~V~RRYsDF~~L~~~L~~-~~~~~iPpLP~K~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hP~l~ 109 (123)
T cd07293 31 PIFKLKESTVRRRYSDFEWLRSELER-ESKVVVPPLPGKALFRQLPFRGDDGIFDDSFIEERKQGLEQFLNKVAGHPLAQ 109 (123)
T ss_pred CccccCceEEECCchHHHHHHHHHHh-ccCCccCCCCCCchhhhcccccccCCCCHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 67888999999999999999999975 589999999999986321 257899999999999999999999999999
Q ss_pred CChhhhcccccc
Q psy18202 76 VNSHAIIFLTAK 87 (357)
Q Consensus 76 ~~~~~~~FL~~~ 87 (357)
+|+.|+.||+.+
T Consensus 110 ~~~~l~~FL~~~ 121 (123)
T cd07293 110 NERCLHMFLQDE 121 (123)
T ss_pred cCcHHHhhcCCC
Confidence 999999999875
No 32
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.92 E-value=2.6e-25 Score=175.19 Aligned_cols=83 Identities=37% Similarity=0.735 Sum_probs=78.9
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|....|.|+|||+||.|||+.|...|||+++||+|+|..+ ++++++|+++||++|+.||++|+.||+|++|+.|
T Consensus 30 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~----~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~ 105 (112)
T cd06861 30 PNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSV----GRFDDNFVEQRRAALEKMLRKIANHPVLQKDPDF 105 (112)
T ss_pred CCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccc----cCCCHHHHHHHHHHHHHHHHHHHCCcccccCcHH
Confidence 467888999999999999999999999999999999999987 7889999999999999999999999999999999
Q ss_pred hcccccc
Q psy18202 81 IIFLTAK 87 (357)
Q Consensus 81 ~~FL~~~ 87 (357)
+.||+++
T Consensus 106 ~~FL~~~ 112 (112)
T cd06861 106 RLFLESE 112 (112)
T ss_pred HHhcCCC
Confidence 9999864
No 33
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.92 E-value=1.9e-25 Score=178.24 Aligned_cols=86 Identities=38% Similarity=0.600 Sum_probs=76.9
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHh--CCCCCCCCCCCccccc---------hhh-hcCCHHHHHHHHHHH-------
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVET--LPSHIIPPLPEKHSLL---------EHL-NRYSKEFILCRMKLL------- 61 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~--~p~~~iPplP~K~~~~---------~~~-~~~~~~fie~R~~~L------- 61 (357)
|+|++++++|+|||+||+|||+.|..+ |||+||||+|+|+.+. |.. +.++.+|+++|+..|
T Consensus 28 ~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~~klg~~d~~~~~ef~~~r~~~Le~~y~~~ 107 (141)
T cd06892 28 PTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQKLGEGEGSMTKEEFEKMKQELEAEYLAI 107 (141)
T ss_pred ccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccceeeecccCccccchHHHHHHHHHHhHHHHHH
Confidence 789999999999999999999999976 8999999999998651 111 347899999999988
Q ss_pred --------HHHHHHHHcCccccCChhhhccccc
Q psy18202 62 --------DQFLRRVTSHPVLSVNSHAIIFLTA 86 (357)
Q Consensus 62 --------~~fL~~i~~hp~L~~~~~~~~FL~~ 86 (357)
++||+||+.||+|+++..|+.||+.
T Consensus 108 ~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 108 FKKTVAMHEVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred HHHHHHHHHHHHHHhccCCeeecCHhHHhhhcC
Confidence 5899999999999999999999985
No 34
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.91 E-value=9.1e-25 Score=175.37 Aligned_cols=87 Identities=33% Similarity=0.572 Sum_probs=78.3
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccc-----hhhhcCCHHHHHHHHHHHHHHHHHHHcCcccc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLL-----EHLNRYSKEFILCRMKLLDQFLRRVTSHPVLS 75 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~-----~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~ 75 (357)
|.|+..++.|+||||||.|||+.|.. .||++|||||+|.... +..++++++||++|+++|+.||++|++||.|+
T Consensus 33 ~~~~~~~~~V~RRYsDF~~L~~~L~~-~~g~~iPpLP~K~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~ 111 (132)
T cd07294 33 PIFKLKESCVRRRYSDFEWLKNELER-DSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQ 111 (132)
T ss_pred CCcccceeEEeCCccHHHHHHHHHHH-cCCCccCCCCCCceeccccccccccCCCHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 56888999999999999999999975 5899999999999742 12257899999999999999999999999999
Q ss_pred CChhhhccccccc
Q psy18202 76 VNSHAIIFLTAKL 88 (357)
Q Consensus 76 ~~~~~~~FL~~~~ 88 (357)
+|+.|+.||+.+.
T Consensus 112 ~~~~l~~FL~~~~ 124 (132)
T cd07294 112 NERCLHMFLQDET 124 (132)
T ss_pred cChHHHHhcCCCC
Confidence 9999999999884
No 35
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.91 E-value=1.3e-24 Score=171.62 Aligned_cols=85 Identities=38% Similarity=0.565 Sum_probs=79.9
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcccc-CChh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLS-VNSH 79 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~-~~~~ 79 (357)
|.|....+.|+|||+||.|||+.|...||++.|||+|+|..+ ++++++||++|+++|+.||++|++||+|+ .++.
T Consensus 31 ~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~----~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~~s~~ 106 (116)
T cd07295 31 PAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFT----NRFSDEVIEERRQGLETFLQSVAGHPLLQTGSKV 106 (116)
T ss_pred ccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccc----cCCCHHHHHHHHHHHHHHHHHHhcCHhhhhCCHH
Confidence 568888999999999999999999999999999999999976 67899999999999999999999999999 5899
Q ss_pred hhcccccccc
Q psy18202 80 AIIFLTAKLA 89 (357)
Q Consensus 80 ~~~FL~~~~~ 89 (357)
|..||+.++|
T Consensus 107 ~~~FL~~~~~ 116 (116)
T cd07295 107 LAAFLQDPKF 116 (116)
T ss_pred HHHhcCCCCC
Confidence 9999999864
No 36
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.91 E-value=1.5e-24 Score=172.96 Aligned_cols=86 Identities=35% Similarity=0.615 Sum_probs=78.0
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchh-----hhcCCHHHHHHHHHHHHHHHHHHHcCcccc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEH-----LNRYSKEFILCRMKLLDQFLRRVTSHPVLS 75 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-----~~~~~~~fie~R~~~L~~fL~~i~~hp~L~ 75 (357)
|.|+..++.|+||||||+|||+.|... ||++|||||+|..+... .++++++||++|+++|+.||++|++||.|+
T Consensus 31 ~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~~~~~~~~fie~Rr~~L~~fL~~i~~hp~l~ 109 (123)
T cd06894 31 PVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALKRQLPFRGDDGIFEEEFIEERRKGLETFINKVAGHPLAQ 109 (123)
T ss_pred cccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCceecccccccccCCCCHHHHHHHHHHHHHHHHHHHcChhhc
Confidence 567888999999999999999999866 99999999999986321 267899999999999999999999999999
Q ss_pred CChhhhcccccc
Q psy18202 76 VNSHAIIFLTAK 87 (357)
Q Consensus 76 ~~~~~~~FL~~~ 87 (357)
+|+.|+.||+.+
T Consensus 110 ~s~~~~~FL~~~ 121 (123)
T cd06894 110 NEKCLHMFLQEE 121 (123)
T ss_pred cCCHHHHhcCCC
Confidence 999999999976
No 37
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.91 E-value=1.9e-24 Score=172.17 Aligned_cols=85 Identities=34% Similarity=0.604 Sum_probs=78.4
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|....|.|+|||+||.|||+.|...|||++|||||+|..+.+. .+++++||++||++|+.||++|+.||.|++|+.|
T Consensus 35 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~ 113 (120)
T cd06865 35 PSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQ-VMQSAEFIEQRRVALEKYLNRLAAHPVIGLSDEL 113 (120)
T ss_pred CCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCcccccc-ccCCHHHHHHHHHHHHHHHHHHHcCceeecCcHH
Confidence 568889999999999999999999999999999999999987321 2469999999999999999999999999999999
Q ss_pred hccccc
Q psy18202 81 IIFLTA 86 (357)
Q Consensus 81 ~~FL~~ 86 (357)
+.||+.
T Consensus 114 ~~FL~~ 119 (120)
T cd06865 114 RVFLTL 119 (120)
T ss_pred HHhccC
Confidence 999986
No 38
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.91 E-value=2.5e-24 Score=171.49 Aligned_cols=87 Identities=46% Similarity=0.786 Sum_probs=79.1
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccch-hhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLE-HLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSH 79 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~-~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~ 79 (357)
|.|+...|.|+|||+||.|||+.|...||+++|||||+|..+.. ..++++++||++|+++|+.||++|+.||.|+.|+.
T Consensus 31 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~ 110 (118)
T cd06863 31 PSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDRFSPEFITRRAQSLQRFLRRISLHPVLSQSKI 110 (118)
T ss_pred CCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccCCCHHHHHHHHHHHHHHHHHHhcCcccccCcH
Confidence 56788899999999999999999999999999999999997621 12568999999999999999999999999999999
Q ss_pred hhcccccc
Q psy18202 80 AIIFLTAK 87 (357)
Q Consensus 80 ~~~FL~~~ 87 (357)
|+.||++.
T Consensus 111 l~~FL~s~ 118 (118)
T cd06863 111 LHQFLESS 118 (118)
T ss_pred HHhhcCCC
Confidence 99999863
No 39
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.90 E-value=9.6e-24 Score=169.79 Aligned_cols=86 Identities=35% Similarity=0.576 Sum_probs=77.4
Q ss_pred CCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccch----hhhcCCHHHHHHHHHHHHHHHHHHHcCccccCC
Q psy18202 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLE----HLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVN 77 (357)
Q Consensus 2 ~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~----~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~ 77 (357)
.|....|.|+|||+||+|||+.|...||++++||||+|..+.. ..++++++||++||++|+.||++|++||+|+.|
T Consensus 40 ~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s 119 (129)
T cd06864 40 GLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAMFMWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQD 119 (129)
T ss_pred ccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCcceecccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcC
Confidence 3567889999999999999999999999999999999997421 125789999999999999999999999999999
Q ss_pred hhhhcccccc
Q psy18202 78 SHAIIFLTAK 87 (357)
Q Consensus 78 ~~~~~FL~~~ 87 (357)
++|+.||+.+
T Consensus 120 ~~l~~FL~~~ 129 (129)
T cd06864 120 KIFLEFLTHE 129 (129)
T ss_pred cHHHHhcCCC
Confidence 9999999863
No 40
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.89 E-value=2e-23 Score=167.43 Aligned_cols=86 Identities=34% Similarity=0.513 Sum_probs=76.6
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCC--CCCCCCCCCccccch------hhhcCCHHHHHHHHHHHHHHHHHHHcCc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLP--SHIIPPLPEKHSLLE------HLNRYSKEFILCRMKLLDQFLRRVTSHP 72 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p--~~~iPplP~K~~~~~------~~~~~~~~fie~R~~~L~~fL~~i~~hp 72 (357)
|.|+.+.|.|.||||||+|||+.|...|| |+++||+|+|..+.. ..++++++||++||++|+.||++|++||
T Consensus 30 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~l~~~p 109 (124)
T cd07281 30 LMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLERRRAALERYLQRIVSHP 109 (124)
T ss_pred CccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhhccccccccHHHHHHHHHHHHHHHHHHhcCc
Confidence 56888999999999999999999999986 789999999987521 1135689999999999999999999999
Q ss_pred cccCChhhhccccc
Q psy18202 73 VLSVNSHAIIFLTA 86 (357)
Q Consensus 73 ~L~~~~~~~~FL~~ 86 (357)
+|++|+.|+.||+.
T Consensus 110 ~l~~s~~~~~FL~~ 123 (124)
T cd07281 110 SLLQDPDVREFLEK 123 (124)
T ss_pred ccccChHHHHHhCC
Confidence 99999999999975
No 41
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.89 E-value=3.6e-23 Score=162.79 Aligned_cols=82 Identities=35% Similarity=0.601 Sum_probs=76.2
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCC-HHHHHHHHHHHHHHHHHHHcCccccCChh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYS-KEFILCRMKLLDQFLRRVTSHPVLSVNSH 79 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~-~~fie~R~~~L~~fL~~i~~hp~L~~~~~ 79 (357)
|.|....+.|+|||+||.|||..|...+|++.+||||+|..+ ++++ ++||++||++|+.||++|+.||.|..++.
T Consensus 30 ~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~----~~~~~~~fie~Rr~~L~~fL~~i~~~p~l~~s~~ 105 (113)
T cd06898 30 MCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLF----GRFNNEGFIEERQQGLQDFLEKVLQTPLLLSDSR 105 (113)
T ss_pred CccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccc----cCCCCHHHHHHHHHHHHHHHHHHHcChhhccChH
Confidence 356677889999999999999999999999999999999987 5566 99999999999999999999999999999
Q ss_pred hhccccc
Q psy18202 80 AIIFLTA 86 (357)
Q Consensus 80 ~~~FL~~ 86 (357)
|+.||+.
T Consensus 106 l~~FL~~ 112 (113)
T cd06898 106 LHLFLQT 112 (113)
T ss_pred HHHhccC
Confidence 9999975
No 42
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.88 E-value=5.4e-23 Score=159.65 Aligned_cols=77 Identities=40% Similarity=0.678 Sum_probs=74.0
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
.++.|.||||||.|||+.|...||++++||||+|..+ ++++++|+++|+++|+.||++|+.||.|++|+.|+.||+
T Consensus 28 ~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~----~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~ 103 (105)
T cd06866 28 FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIG----GSADREFLEARRRGLSRFLNLVARHPVLSEDELVRTFLT 103 (105)
T ss_pred CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccc----cCCCHHHHHHHHHHHHHHHHHHhcChhhccChHHHhhcC
Confidence 5789999999999999999999999999999999987 578999999999999999999999999999999999998
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
.
T Consensus 104 ~ 104 (105)
T cd06866 104 E 104 (105)
T ss_pred C
Confidence 6
No 43
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.88 E-value=3.8e-20 Score=160.69 Aligned_cols=194 Identities=13% Similarity=0.190 Sum_probs=171.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhh
Q psy18202 125 HSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLI 203 (357)
Q Consensus 125 d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~ 203 (357)
|....-+.+||..++.++..++..+..+++++.+|+....+||.++..++.+|.. |+.+|..+++++..+.+..+. .+
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~~q~-qv 81 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQDYRQA-EV 81 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3445567899999999999999999999999999999999999999999999965 999999999999999988777 67
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 204 EPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 204 ~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
+.+..+|.+||++|.+.|.++++.++. |..+...+-+++.+++++... ++
T Consensus 82 ~~l~~~v~epLk~Y~~l~k~~k~~~K~-------~~~ar~~~~~~~~~leklk~~----~~------------------- 131 (211)
T cd07598 82 ERLEAKVVQPLALYGTICKHARDDLKN-------TFTARNKELKQLKQLEKLRQK----NP------------------- 131 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhc----CC-------------------
Confidence 777789999999999999999999942 667777777888888888643 11
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
+++. +|.++|.++..+..+++.++..|.+|+.+|+..|..||+.+|.+|+..++.+|.+.+++|+.
T Consensus 132 -~d~~-----~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~ 197 (211)
T cd07598 132 -SDRQ-----IISQAESELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTA 197 (211)
T ss_pred -chhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 67788999999999999999999999999999999999999999999999999999999964
No 44
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.88 E-value=5.9e-23 Score=162.14 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=74.1
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCCCC-----CCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCC
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHI-----IPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVN 77 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~~~-----iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~ 77 (357)
++..++.|+||||||.|||+.|...|++.+ +||+|+|..+ ++|+++||++||.+|++||++|++||.|++|
T Consensus 33 ~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~----g~f~~~fIeeRR~~Le~fL~~i~~~p~l~~s 108 (118)
T cd07288 33 EDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVF----GRFEAAVIEERRNAAEAMLLFTVNIPALYNS 108 (118)
T ss_pred ccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceee----ccCCHHHHHHHHHHHHHHHHHHhCChhhcCC
Confidence 445689999999999999999999887654 9999999987 7899999999999999999999999999999
Q ss_pred hhhhccccc
Q psy18202 78 SHAIIFLTA 86 (357)
Q Consensus 78 ~~~~~FL~~ 86 (357)
++|+.||+.
T Consensus 109 ~~~~~FL~~ 117 (118)
T cd07288 109 PQLKEFFRD 117 (118)
T ss_pred hHHHHHHhc
Confidence 999999975
No 45
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.88 E-value=5.9e-23 Score=161.99 Aligned_cols=81 Identities=36% Similarity=0.600 Sum_probs=74.1
Q ss_pred cceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchh-----hhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhh
Q psy18202 7 ECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEH-----LNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAI 81 (357)
Q Consensus 7 ~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-----~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~ 81 (357)
.|.|.||||||.|||+.|...||++++||||+|..+... .++++++||++||++|+.||++|+.||+|+.|+.|+
T Consensus 27 ~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~ 106 (112)
T cd06867 27 GSEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKAKNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQ 106 (112)
T ss_pred eEEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccccCcHHHHHHHHHHHHHHHHHHhcChhhccCcHHH
Confidence 489999999999999999999999999999999976432 135799999999999999999999999999999999
Q ss_pred cccccc
Q psy18202 82 IFLTAK 87 (357)
Q Consensus 82 ~FL~~~ 87 (357)
.||+++
T Consensus 107 ~FL~~~ 112 (112)
T cd06867 107 KFLDPN 112 (112)
T ss_pred HhcCCC
Confidence 999874
No 46
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.88 E-value=7.9e-23 Score=163.11 Aligned_cols=79 Identities=41% Similarity=0.665 Sum_probs=75.4
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
..+.|.||||||.|||+.|...||+++|||||+|..+ ++++++||++|+++|+.||++|+.||.|++|+.|+.||+
T Consensus 30 ~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~----~~~~~~fie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~ 105 (125)
T cd06862 30 TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVT----GRFEEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFLT 105 (125)
T ss_pred CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccc----cCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHcC
Confidence 4789999999999999999999999999999999986 678999999999999999999999999999999999999
Q ss_pred ccc
Q psy18202 86 AKL 88 (357)
Q Consensus 86 ~~~ 88 (357)
.++
T Consensus 106 ~~~ 108 (125)
T cd06862 106 CTD 108 (125)
T ss_pred Ccc
Confidence 875
No 47
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.88 E-value=9.3e-23 Score=161.68 Aligned_cols=74 Identities=30% Similarity=0.487 Sum_probs=70.8
Q ss_pred cceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccccc
Q psy18202 7 ECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTA 86 (357)
Q Consensus 7 ~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~~ 86 (357)
+|.|.||||||.|||+.|...||++++||||+|..+ + +++||++||++|+.||++|++||.|++|+.|+.||..
T Consensus 46 ~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~----~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 46 QFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF----V--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGV 119 (120)
T ss_pred eEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc----C--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence 689999999999999999999999999999999987 3 7999999999999999999999999999999999974
No 48
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.86 E-value=3.7e-22 Score=158.38 Aligned_cols=83 Identities=45% Similarity=0.865 Sum_probs=76.2
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCH--HHHHHHHHHHHHHHHHHHcCccccCCh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSK--EFILCRMKLLDQFLRRVTSHPVLSVNS 78 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~--~fie~R~~~L~~fL~~i~~hp~L~~~~ 78 (357)
|.|....|.|+|||+||.|||+.|...+|+.++||||+|..+ ++++. +||++|+.+|+.||++|+.||.|+.|+
T Consensus 30 ~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~----~~~~~~~~~ie~Rr~~L~~fL~~i~~~p~l~~s~ 105 (114)
T cd06859 30 PDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAV----GRFKVKFEFIEKRRAALERFLRRIAAHPVLRKDP 105 (114)
T ss_pred CCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCccc----CccCccHHHHHHHHHHHHHHHHHHhcChhhccCc
Confidence 457788999999999999999999999999999999999987 55554 499999999999999999999999999
Q ss_pred hhhcccccc
Q psy18202 79 HAIIFLTAK 87 (357)
Q Consensus 79 ~~~~FL~~~ 87 (357)
.|+.||+++
T Consensus 106 ~~~~Fl~~~ 114 (114)
T cd06859 106 DFRLFLESD 114 (114)
T ss_pred HHHhhcCCC
Confidence 999999764
No 49
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.86 E-value=9.4e-22 Score=155.97 Aligned_cols=81 Identities=27% Similarity=0.418 Sum_probs=76.1
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhc
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAII 82 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~ 82 (357)
.....|.|.||||||.|||..|...||++.+||||+|..+ ++++++||++||.+||.||+.|+.||.|+.|+.|+.
T Consensus 39 ~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~----~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~ 114 (119)
T cd06877 39 HEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIF----GPKSYEFLESKREIFEEFLQKLLQKPELRGSELLYD 114 (119)
T ss_pred CCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCccc----CCCCHHHHHHHHHHHHHHHHHHhCCcccccCHHHHH
Confidence 4567899999999999999999999999999999999987 668999999999999999999999999999999999
Q ss_pred ccccc
Q psy18202 83 FLTAK 87 (357)
Q Consensus 83 FL~~~ 87 (357)
||+.+
T Consensus 115 FL~~~ 119 (119)
T cd06877 115 FLSPN 119 (119)
T ss_pred hCCCC
Confidence 99864
No 50
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.86 E-value=7.2e-22 Score=155.67 Aligned_cols=77 Identities=26% Similarity=0.433 Sum_probs=71.9
Q ss_pred CcceeecchhhHHHHHHHHHHhCC-----CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLP-----SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p-----~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
..++|+||||||.|||+.|...|| +.++||+|+|..+ ++++++||++||++|+.||++|++||.|++|++|
T Consensus 36 ~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~----g~~d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~ 111 (118)
T cd07287 36 QEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVF----GRFDESVIEERRQCAEDLLQFSANIPALYNSSQL 111 (118)
T ss_pred eeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceee----cCCCHHHHHHHHHHHHHHHHHHhcCccccCChHH
Confidence 579999999999999999999887 4578999988887 7899999999999999999999999999999999
Q ss_pred hccccc
Q psy18202 81 IIFLTA 86 (357)
Q Consensus 81 ~~FL~~ 86 (357)
+.||..
T Consensus 112 ~~Fl~~ 117 (118)
T cd07287 112 EDFFKG 117 (118)
T ss_pred HHHhcC
Confidence 999975
No 51
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.86 E-value=1.1e-21 Score=154.28 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=77.6
Q ss_pred CCCCCcceeecchhhHHHHHHHHHHhCCCCC-CCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHI-IPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 2 ~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~-iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
.|+.+.|+|.||||||.|||..|...+++++ .||+|+|..+ ++++++||++|+.+|+.||++|++||.|+.++.|
T Consensus 30 ~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~----~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~ 105 (114)
T cd07300 30 SFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLT----GNFSEEIIAERRVALRDYLTLLYSLRFVRRSQAF 105 (114)
T ss_pred CccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCccc----CCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHH
Confidence 3778899999999999999999999999876 7899999987 7899999999999999999999999999999999
Q ss_pred hccccccc
Q psy18202 81 IIFLTAKL 88 (357)
Q Consensus 81 ~~FL~~~~ 88 (357)
+.||+.++
T Consensus 106 ~~FL~~~~ 113 (114)
T cd07300 106 QDFLTHPE 113 (114)
T ss_pred HHHhCCcc
Confidence 99999873
No 52
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.85 E-value=2.4e-21 Score=154.38 Aligned_cols=79 Identities=28% Similarity=0.370 Sum_probs=74.5
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
....|.|.||||||.+||+.|...+|++.+||+|+|..+ +.++++|+++||++||.||++|++||.+++++.|+.|
T Consensus 59 ~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l----~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~F 134 (138)
T cd06879 59 ITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLL----RMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASF 134 (138)
T ss_pred cceeeeeecCchHHHHHHHHHHHHCCCCcCCCCCCcccc----cCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHH
Confidence 345889999999999999999999999999999999987 5789999999999999999999999999999999999
Q ss_pred ccc
Q psy18202 84 LTA 86 (357)
Q Consensus 84 L~~ 86 (357)
|+.
T Consensus 135 Lel 137 (138)
T cd06879 135 LEL 137 (138)
T ss_pred hCC
Confidence 975
No 53
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.85 E-value=2.4e-21 Score=154.68 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=74.8
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCC---CCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhh
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSH---IIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAI 81 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~---~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~ 81 (357)
.++|.|+||||||.|||+.|...||+. +|||||+|..+.....+++++||++|+++|+.||++|+.||.|+.|+.|+
T Consensus 36 ~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~ 115 (120)
T cd07280 36 GSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRVNLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVK 115 (120)
T ss_pred CCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccccccccCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHH
Confidence 478999999999999999999999987 89999999987322237899999999999999999999999999999999
Q ss_pred ccccc
Q psy18202 82 IFLTA 86 (357)
Q Consensus 82 ~FL~~ 86 (357)
.||++
T Consensus 116 ~FL~~ 120 (120)
T cd07280 116 EFLLP 120 (120)
T ss_pred HhhCC
Confidence 99974
No 54
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.85 E-value=2.7e-21 Score=152.51 Aligned_cols=81 Identities=27% Similarity=0.420 Sum_probs=74.3
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCCCCC-CCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhh
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHII-PPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAI 81 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~~~i-PplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~ 81 (357)
+....|.|+||||||.|||+.|...||+.++ ||+|+|..+ ++++++||++|+.+|+.||++|++||.|++|+.|+
T Consensus 31 ~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~----~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~ 106 (112)
T cd07279 31 PDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLM----GNFSSELIAERSRAFEQFLGHILSIPNLRDSKAFL 106 (112)
T ss_pred CCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeec----ccCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHH
Confidence 3456799999999999999999999999874 789999887 67899999999999999999999999999999999
Q ss_pred cccccc
Q psy18202 82 IFLTAK 87 (357)
Q Consensus 82 ~FL~~~ 87 (357)
.||+.+
T Consensus 107 ~FL~~~ 112 (112)
T cd07279 107 DFLQGP 112 (112)
T ss_pred HHhCCC
Confidence 999863
No 55
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.85 E-value=3.1e-21 Score=151.49 Aligned_cols=81 Identities=25% Similarity=0.439 Sum_probs=74.9
Q ss_pred CCCCCcceeecchhhHHHHHHHHHHhCCCCCC-CCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHII-PPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 2 ~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~i-PplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
.|....|.|.||||||.|||+.|...||+.+. ||+|+|..+ ++++++||++|+++|+.||++|++||.|+.++.|
T Consensus 30 ~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~----~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~ 105 (112)
T cd07301 30 QYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLR----KNFTAETIAKRSRAFEQFLCHLHSLPELRASPAF 105 (112)
T ss_pred CCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCccc----CCCCHHHHHHHHHHHHHHHHHHhcCHHHhcChHH
Confidence 46778899999999999999999999998765 699999987 6799999999999999999999999999999999
Q ss_pred hccccc
Q psy18202 81 IIFLTA 86 (357)
Q Consensus 81 ~~FL~~ 86 (357)
+.||.-
T Consensus 106 ~~FL~l 111 (112)
T cd07301 106 LEFFYL 111 (112)
T ss_pred HHHhCC
Confidence 999964
No 56
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.84 E-value=4.7e-21 Score=151.98 Aligned_cols=77 Identities=29% Similarity=0.455 Sum_probs=71.7
Q ss_pred CcceeecchhhHHHHHHHHHHhCCC----CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhh
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPS----HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAI 81 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~----~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~ 81 (357)
+.+.|+||||||.|||+.|...||+ ..+||+|+|..+ ++++++||++|+.+|+.||++|++||.|+.++.|+
T Consensus 36 ~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~----g~~~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~ 111 (117)
T cd06881 36 SEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYF----GRFDAAVIEERRQAILELLDFVGNHPALYQSSAFQ 111 (117)
T ss_pred ceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCccc----CCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHH
Confidence 5899999999999999999999974 457999999987 78999999999999999999999999999999999
Q ss_pred ccccc
Q psy18202 82 IFLTA 86 (357)
Q Consensus 82 ~FL~~ 86 (357)
.||+-
T Consensus 112 ~Fl~~ 116 (117)
T cd06881 112 QFFEE 116 (117)
T ss_pred HHhcc
Confidence 99973
No 57
>KOG2527|consensus
Probab=99.83 E-value=2.3e-21 Score=149.47 Aligned_cols=85 Identities=38% Similarity=0.651 Sum_probs=76.9
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|+..+.+|+||||||+|||.+|...-.-++|||||.|..+.+. + ..+|||+||++|+.||+.|+.||.+.++..+
T Consensus 47 p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~--~-fre~IEeRrqgLe~fl~kVaghpL~q~~~~L 123 (144)
T KOG2527|consen 47 PSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQL--P-FREFIEERRQGLEVFLRKVAGHPLLQNERCL 123 (144)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcC--c-hHHHHHHHHHHHHHHHHHHhCchhhhccHHH
Confidence 678999999999999999999999999988999999999987432 1 2299999999999999999999999999999
Q ss_pred hccccccc
Q psy18202 81 IIFLTAKL 88 (357)
Q Consensus 81 ~~FL~~~~ 88 (357)
+.||.+.-
T Consensus 124 h~Flq~~~ 131 (144)
T KOG2527|consen 124 HLFLQSEL 131 (144)
T ss_pred HHHHHhhh
Confidence 99998873
No 58
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.82 E-value=2.9e-20 Score=146.07 Aligned_cols=78 Identities=26% Similarity=0.413 Sum_probs=72.2
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
+..|.|.||||||.|||..|...+|+ ++||||+|..+. ++++++||++|+.+|+.||++|++||.|++++.|+.||
T Consensus 32 ~~~~~v~RRYsdF~~L~~~L~~~~~~-~~~~lP~K~~~~---~~~~~~fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL 107 (110)
T cd07276 32 GDSWFVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWFK---DNFDPDFLEERQLGLQAFVNNIMAHKDIAKCKLVREFF 107 (110)
T ss_pred CCEEEEEEehHHHHHHHHHHHHHCCC-CCCCCCCcceec---ccCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHh
Confidence 36899999999999999999999998 789999999762 35899999999999999999999999999999999999
Q ss_pred cc
Q psy18202 85 TA 86 (357)
Q Consensus 85 ~~ 86 (357)
..
T Consensus 108 ~~ 109 (110)
T cd07276 108 CL 109 (110)
T ss_pred cc
Confidence 75
No 59
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.81 E-value=1.5e-17 Score=149.07 Aligned_cols=212 Identities=13% Similarity=0.152 Sum_probs=184.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCch-------------hHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEP-------------QLSSVIRQV 187 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~-------------~l~~~l~~~ 187 (357)
+.+....|...+.+|..+...+.++...+++++++.+.++.++..||..++.|+..+. .+..+|..+
T Consensus 17 p~~~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 96 (246)
T cd07597 17 PPDFQEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSL 96 (246)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHH
Confidence 4556678999999999999999999999999999999999999999999999998653 388999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy18202 188 SKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRD-VIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPT 266 (357)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~-~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~ 266 (357)
|.++..++....+ .+..+...+.++|+.|..++.|+|++|.||+ ....++..+.+........+..+....
T Consensus 97 s~~~~~~s~~~~~-~a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~------- 168 (246)
T cd07597 97 SKHFQLLSDLSED-EARAEEDGVLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKP------- 168 (246)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCC-------
Confidence 9999999999887 7777788999999999999999999999999 555577777777766666666655330
Q ss_pred CCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 267 SSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYY 346 (357)
Q Consensus 267 ~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~ 346 (357)
......+++++..|..-++.+.+...+...|..|++.|+..|+.... .+..++.+|+..|+.+|
T Consensus 169 ---------------~~~~~e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~ 232 (246)
T cd07597 169 ---------------DVKGAEVDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYH 232 (246)
T ss_pred ---------------CCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 01235788899999999999998888899999999999999999876 99999999999999999
Q ss_pred HHHHhccccc
Q psy18202 347 QQRSDRGNCN 356 (357)
Q Consensus 347 ~~~~~~W~~~ 356 (357)
.++.++|...
T Consensus 233 ~~l~~~W~~L 242 (246)
T cd07597 233 SELANVWERL 242 (246)
T ss_pred HHHHHHHHHh
Confidence 9999999753
No 60
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.81 E-value=4.5e-20 Score=148.51 Aligned_cols=86 Identities=28% Similarity=0.346 Sum_probs=69.3
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCC--CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCCh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLP--SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNS 78 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p--~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~ 78 (357)
|.|+..+|.|.||||||.|||+.|....+ +++.+++|+|....-..++++++||++||.+|+.||++|++||.|+.|+
T Consensus 44 ~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P~k~~p~lp~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~ 123 (132)
T cd06893 44 SEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPKRLFDLPFGNMDKDKIEARRGLLETFLRQLCSIPEISNSE 123 (132)
T ss_pred cccccCeEEEECchHHHHHHHHHHHHccCcccccccCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCH
Confidence 57888999999999999999999997532 2333445555431000267899999999999999999999999999999
Q ss_pred hhhccccc
Q psy18202 79 HAIIFLTA 86 (357)
Q Consensus 79 ~~~~FL~~ 86 (357)
+|+.||.-
T Consensus 124 ~l~~FL~~ 131 (132)
T cd06893 124 EVQEFLAY 131 (132)
T ss_pred HHHHHHcc
Confidence 99999964
No 61
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.81 E-value=5.3e-20 Score=144.35 Aligned_cols=78 Identities=28% Similarity=0.473 Sum_probs=72.3
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhh-cCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLN-RYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~-~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
...|.|.||||||.|||+.|...||+..+ |+|+|..+ + +++++||++|+.+|+.||+.|++||.|.+++.|+.|
T Consensus 31 ~~~~~v~RRYseF~~L~~~L~~~~~~~~~-~lP~K~~~----~~~~~~~~ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~F 105 (109)
T cd06870 31 RSSWFVFRRYAEFDKLYESLKKQFPASNL-KIPGKRLF----GNNFDPDFIKQRRAGLDEFIQRLVSDPKLLNHPDVRAF 105 (109)
T ss_pred CeEEEEEeehHHHHHHHHHHHHHCcccCc-CCCCCccc----ccCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHH
Confidence 56899999999999999999999999854 79999987 5 789999999999999999999999999999999999
Q ss_pred cccc
Q psy18202 84 LTAK 87 (357)
Q Consensus 84 L~~~ 87 (357)
|+.+
T Consensus 106 L~~~ 109 (109)
T cd06870 106 LQMD 109 (109)
T ss_pred hCcC
Confidence 9753
No 62
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.81 E-value=8.1e-20 Score=141.98 Aligned_cols=76 Identities=29% Similarity=0.466 Sum_probs=71.5
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+.+.|.||||||.+||+.|...+|++.+||+|+|..+ .++++|+++||++|+.||+.|++||+|+.|+.|+.||+
T Consensus 30 ~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~-----~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 104 (106)
T cd06886 30 GRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPF-----SLSEQQLDARRRGLEQYLEKVCSIRVIGESDIMQDFLS 104 (106)
T ss_pred CCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcC-----CCCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhc
Confidence 4689999999999999999999999999999999986 26889999999999999999999999999999999997
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
.
T Consensus 105 ~ 105 (106)
T cd06886 105 D 105 (106)
T ss_pred c
Confidence 5
No 63
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.80 E-value=1.4e-19 Score=142.17 Aligned_cols=81 Identities=27% Similarity=0.342 Sum_probs=74.9
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCc--cccCChhhh
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHP--VLSVNSHAI 81 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp--~L~~~~~~~ 81 (357)
....|.|.||||||.+||+.|...+|+..+||+|+|..+.. ++++++||++|+++|+.||+.|+.|| .+++|+.|+
T Consensus 25 ~~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~--~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~ 102 (108)
T cd06897 25 PLRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLS--TSSNPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVK 102 (108)
T ss_pred CCceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecc--cCCCHHHHHHHHHHHHHHHHHHHcCCccchhcCHHHH
Confidence 35789999999999999999999999999999999998721 37899999999999999999999999 999999999
Q ss_pred ccccc
Q psy18202 82 IFLTA 86 (357)
Q Consensus 82 ~FL~~ 86 (357)
.||+.
T Consensus 103 ~FL~~ 107 (108)
T cd06897 103 EFLNL 107 (108)
T ss_pred HHhCC
Confidence 99975
No 64
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.78 E-value=7.2e-19 Score=139.80 Aligned_cols=80 Identities=30% Similarity=0.422 Sum_probs=71.5
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhc
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAII 82 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~ 82 (357)
|....|.|.||||||.+||+.|... +. .||+|+|..+ ++++++||++|+.+|+.||++|+.||.++.++.|..
T Consensus 33 ~~~~~w~V~RRYsdF~~Lh~~L~~~--~~-~~plP~K~~~----g~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~ 105 (120)
T cd06871 33 SPENSWQVIRRYNDFDLLNASLQIS--GI-SLPLPPKKLI----GNMDREFIAERQQGLQNYLNVILMNPILASCLPVKK 105 (120)
T ss_pred cCCceeEEEeeHHHHHHHHHHHHHc--CC-CCCCCCcccc----CCCCHHHHHHHHHHHHHHHHHHHcChhhccCHHHHH
Confidence 5567899999999999999999863 33 3579999987 678999999999999999999999999999999999
Q ss_pred ccccccc
Q psy18202 83 FLTAKLA 89 (357)
Q Consensus 83 FL~~~~~ 89 (357)
||+.+++
T Consensus 106 FL~~~~~ 112 (120)
T cd06871 106 FLDPNNY 112 (120)
T ss_pred hcCcccC
Confidence 9997754
No 65
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.77 E-value=5.5e-19 Score=139.66 Aligned_cols=73 Identities=32% Similarity=0.397 Sum_probs=68.1
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
.+.|.|.|||+||.|||..|...||++.+||||+|.. .++|+|+.+|+.||++|+.||.|++|+.|..||
T Consensus 47 ~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~----------~~~E~Rr~~Le~yL~~Ll~~p~l~~s~~~~~FL 116 (119)
T cd06869 47 YRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK----------LPREKLRLSLRQYLRSLLKDPEVAHSSILQEFL 116 (119)
T ss_pred CCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch----------hHHHHHHHHHHHHHHHHhcChhhhcChHHHHhh
Confidence 3589999999999999999999999999999999986 367899999999999999999999999999999
Q ss_pred ccc
Q psy18202 85 TAK 87 (357)
Q Consensus 85 ~~~ 87 (357)
.++
T Consensus 117 ~~~ 119 (119)
T cd06869 117 TSD 119 (119)
T ss_pred CCC
Confidence 864
No 66
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.77 E-value=6.9e-19 Score=136.89 Aligned_cols=77 Identities=31% Similarity=0.477 Sum_probs=69.7
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
...|.|.||||||.+||+.|.. +|+. .||+|+|..+. ++++++||++|+.+|+.||+.|++||.+..|+.|+.||
T Consensus 30 ~~~w~v~RRYsdF~~L~~~L~~-~~~~-~~~lP~K~~~~---~~~~~~fie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL 104 (107)
T cd06872 30 NETWVVKRRFRNFETLHRRLKE-VPKY-NLELPPKRFLS---SSLDGAFIEERCKLLDKYLKDLLVIEKVAESHEVWSFL 104 (107)
T ss_pred CceEEEEehHHHHHHHHHHHHh-ccCC-CCCCCCccccC---CCCCHHHHHHHHHHHHHHHHHHhcChhhhcCHHHHHHh
Confidence 4689999999999999999986 6765 77999999873 46799999999999999999999999999999999999
Q ss_pred cc
Q psy18202 85 TA 86 (357)
Q Consensus 85 ~~ 86 (357)
..
T Consensus 105 ~~ 106 (107)
T cd06872 105 SA 106 (107)
T ss_pred cc
Confidence 64
No 67
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.76 E-value=1.7e-18 Score=137.99 Aligned_cols=79 Identities=32% Similarity=0.503 Sum_probs=72.4
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCCh----h
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNS----H 79 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~----~ 79 (357)
....|.|.||||||.+||+.|...+|+..+||+|+|..+ ++++++||++|+.+|+.||+.|+++|.|++++ .
T Consensus 37 ~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~----~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~ 112 (120)
T cd06873 37 QEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTF----NNLDRAFLEKRRKMLNQYLQSLLNPEVLDANPGLQEI 112 (120)
T ss_pred CccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCccc----CCCCHHHHHHHHHHHHHHHHHHhCCHhhccCHHHHHH
Confidence 456899999999999999999999999999999999987 67899999999999999999999999999995 6
Q ss_pred hhccccc
Q psy18202 80 AIIFLTA 86 (357)
Q Consensus 80 ~~~FL~~ 86 (357)
+..||++
T Consensus 113 l~~FL~~ 119 (120)
T cd06873 113 VLDFLEP 119 (120)
T ss_pred HHHHcCC
Confidence 6777764
No 68
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.76 E-value=1.4e-18 Score=134.60 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=71.0
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+.+.|.||||||.+||..|...+|++.+||+|+|..+ +++++||++||.+|+.||+.|+.||.|+.|+.|+.||.
T Consensus 27 ~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~-----~~~~~~ie~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~ 101 (104)
T cd06885 27 GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLL-----PLTPAQLEERRLQLEKYLQAVVQDPRIANSDIFNSFLL 101 (104)
T ss_pred CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCccc-----cCCHHHHHHHHHHHHHHHHHHhcChhhccCHHHHHHHH
Confidence 4678999999999999999999999999999999986 25789999999999999999999999999999999996
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
.
T Consensus 102 ~ 102 (104)
T cd06885 102 N 102 (104)
T ss_pred h
Confidence 4
No 69
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.75 E-value=2.9e-18 Score=139.32 Aligned_cols=78 Identities=23% Similarity=0.407 Sum_probs=72.5
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcC--CHHHHHHHHHHHHHHHHHHHcCccccCChhhhc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRY--SKEFILCRMKLLDQFLRRVTSHPVLSVNSHAII 82 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~--~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~ 82 (357)
...|.|.|||+||.+||+.|...+|+..+||+|+|..+ +.. +++|+++|+.+|+.||+.|+.+|.+++++.|..
T Consensus 54 ~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~----~~~~~~~~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~ 129 (133)
T cd06876 54 SSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKI----SLKYSKTLLVEERRKALEKYLQELLKIPEVCEDEEFRK 129 (133)
T ss_pred cccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccc----cCccCCHHHHHHHHHHHHHHHHHHHcCccccCChHHHH
Confidence 35799999999999999999999999999999999987 333 799999999999999999999999999999999
Q ss_pred cccc
Q psy18202 83 FLTA 86 (357)
Q Consensus 83 FL~~ 86 (357)
||+.
T Consensus 130 FLs~ 133 (133)
T cd06876 130 FLSQ 133 (133)
T ss_pred hhcC
Confidence 9963
No 70
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.75 E-value=2.2e-18 Score=136.14 Aligned_cols=83 Identities=29% Similarity=0.325 Sum_probs=76.6
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
....|.|.||||||.+||..|...+ ++..|++|+|..+ ++++++||++|+.+|+.||+.|++||.+..+++|..|
T Consensus 27 ~~~~w~V~RRYseF~~L~~~L~~~~-~~~~~~~P~Kk~~----~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~F 101 (116)
T cd06875 27 GSVEWTVKHRYSDFAELHDKLVAEH-KVDKDLLPPKKLI----GNKSPSFVEKRRKELEIYLQTLLSFFQKTMPRELAHF 101 (116)
T ss_pred CCeEEEEEecHHHHHHHHHHHHHHc-CcccCcCCCcccc----CCCCHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHH
Confidence 3568999999999999999999999 6788999999988 6789999999999999999999999999999999999
Q ss_pred ccccccch
Q psy18202 84 LTAKLAEF 91 (357)
Q Consensus 84 L~~~~~~~ 91 (357)
|..++++.
T Consensus 102 L~~~~~~~ 109 (116)
T cd06875 102 LDFHKYEI 109 (116)
T ss_pred hCCCceeE
Confidence 99987653
No 71
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.74 E-value=5.1e-18 Score=136.17 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=69.8
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCC--CCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSH--IIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAII 82 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~--~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~ 82 (357)
...|.|.|||+||.+||+.|...||+. +.+|+|+|..+ ++++++|+++||.+|+.||+.|+.+|.|+.++.|..
T Consensus 47 ~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~~----~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~ 122 (127)
T cd06878 47 SSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWF----KSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYS 122 (127)
T ss_pred cceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCCCcccc----ccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHH
Confidence 456999999999999999999999975 44555667766 557999999999999999999999999999999999
Q ss_pred ccccc
Q psy18202 83 FLTAK 87 (357)
Q Consensus 83 FL~~~ 87 (357)
||+++
T Consensus 123 FLsp~ 127 (127)
T cd06878 123 FLSPS 127 (127)
T ss_pred HcCCC
Confidence 99863
No 72
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=99.73 E-value=3e-15 Score=128.39 Aligned_cols=183 Identities=13% Similarity=0.254 Sum_probs=145.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHHHHH
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKD-YVSEAHQFAIVLNTWAGY--------EPQLSSVIRQVSKAVDTT 194 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~-l~~~~~~~~~~~~~l~~~--------E~~l~~~l~~~~~~~~~~ 194 (357)
.+...+.+..++..+++.++.+...+...+++... +-.++..+|.+|..||.+ ...|+.++..+|++++.+
T Consensus 2 ve~~~d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~I 81 (199)
T cd07626 2 VEQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEI 81 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999998888877744 447778888888888732 123999999999999999
Q ss_pred HHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCC
Q psy18202 195 ASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSST 274 (357)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~ 274 (357)
++++.+ +.......|.+.|++|.+.+.++++++..|..+ |.|++... ++... |+
T Consensus 82 g~l~~e-Qa~~D~~~l~E~L~eY~gll~~~pdi~~~~k~a----------l~K~kE~~-r~~~e--gk------------ 135 (199)
T cd07626 82 GELFAE-QPKHDLIPLLDGLHEYKGLLSTFPDIIGVHKGA----------VQKVKECE-RLVDE--GK------------ 135 (199)
T ss_pred HHHHHH-hhHhhHHHHHHHHHHHHhHHHhhhHHHHHHHHH----------HHHHHHHH-HHHHh--cc------------
Confidence 999988 555555699999999999999999999888775 44444432 33221 11
Q ss_pred CcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 275 NSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 275 ~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
+ ...+++.++.+++.|+..++.|+.+|+.+|..||+.+|.+|.+.||.+|++...-++
T Consensus 136 -------------~---------~~~e~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~ 193 (199)
T cd07626 136 -------------M---------SSAELEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIAAKLE 193 (199)
T ss_pred -------------c---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112344577899999999999999999999999999999999999999999887653
No 73
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.72 E-value=1.1e-17 Score=130.68 Aligned_cols=79 Identities=41% Similarity=0.685 Sum_probs=72.1
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccC-Chhhhccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSV-NSHAIIFL 84 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~-~~~~~~FL 84 (357)
..|.|.|||+||.+||+.|...+|+..+||+|+|..+.. .+..+++++++|+.+|+.||+.|+.||.++. |+.|..||
T Consensus 26 ~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~-~~~~~~~~i~~R~~~L~~yL~~l~~~~~~~~~s~~~~~Fl 104 (105)
T smart00312 26 EEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGR-LNNFSEEFIEKRRRGLERYLQSLLNHPELINESEVVLSFL 104 (105)
T ss_pred ceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhccc-CCcCCHHHHHHHHHHHHHHHHHHHcCHhhhccChHHHHhc
Confidence 579999999999999999999999999999999997621 1356899999999999999999999999999 99999998
Q ss_pred c
Q psy18202 85 T 85 (357)
Q Consensus 85 ~ 85 (357)
+
T Consensus 105 ~ 105 (105)
T smart00312 105 E 105 (105)
T ss_pred C
Confidence 5
No 74
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.72 E-value=1.1e-17 Score=133.27 Aligned_cols=82 Identities=26% Similarity=0.481 Sum_probs=72.9
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCC--------CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcc-cc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPS--------HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPV-LS 75 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~--------~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~-L~ 75 (357)
+..|.|.|||+||.+||..|...||. ++||+||+|..+ ++.+ +|+++|+.+|+.||+.|+++|. +.
T Consensus 32 ~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~----~~~~-~~~e~Rr~~Le~yl~~Ll~~p~~i~ 106 (123)
T cd06882 32 GSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYV----GRKA-EIAERRIPLLNRYMKELLSLPVWVL 106 (123)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeec----CccH-HHHHHHHHHHHHHHHHHHcCCHHhc
Confidence 45799999999999999999999995 689999999986 4444 9999999999999999999985 99
Q ss_pred CChhhhccccccccch
Q psy18202 76 VNSHAIIFLTAKLAEF 91 (357)
Q Consensus 76 ~~~~~~~FL~~~~~~~ 91 (357)
.|+.|+.||...+.|+
T Consensus 107 ~~~~v~~Fl~~~~~d~ 122 (123)
T cd06882 107 MDEDVRLFFYQTESDS 122 (123)
T ss_pred CCHHHHHHhCCCcccc
Confidence 9999999999876443
No 75
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.68 E-value=6.5e-17 Score=127.66 Aligned_cols=79 Identities=28% Similarity=0.411 Sum_probs=71.7
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
....|.|.||||||.|||..|...+|+...|++|+|..+ ++++++|+++||.+||.||+.|+.| .+..++.|..|
T Consensus 28 ~~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~----g~~~~~~ie~Rr~~Le~yL~~ll~~-~~~~~~~~~~~ 102 (118)
T cd07277 28 RDDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAI----GNKDAKFVEERRKRLQVYLRRVVNT-LIQTSPELTAC 102 (118)
T ss_pred CCCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCcc----CCCCHHHHHHHHHHHHHHHHHHHHH-HHHhCchhhcC
Confidence 356899999999999999999999999889999999987 6789999999999999999999998 77788888888
Q ss_pred cccc
Q psy18202 84 LTAK 87 (357)
Q Consensus 84 L~~~ 87 (357)
|+-.
T Consensus 103 ~~~~ 106 (118)
T cd07277 103 PSKE 106 (118)
T ss_pred CCHH
Confidence 8755
No 76
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.68 E-value=1.3e-16 Score=124.95 Aligned_cols=74 Identities=22% Similarity=0.399 Sum_probs=68.0
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
+..|+|.||||||.+||..|...++ +|++|+|.. ++++++||++|+.+|+.||+.|+.+|. .++.|..||
T Consensus 30 ~~~~~v~RRYseF~~Lh~~L~~~~~---~p~~P~K~~-----~~~~~~~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL 99 (110)
T cd06880 30 GRRHTVEKRYSEFHALHKKLKKSIK---TPDFPPKRV-----RNWNPKVLEQRRQGLEAYLQGLLKINE--LPKQLLDFL 99 (110)
T ss_pred CeEEEEEccHHHHHHHHHHHHHHCC---CCCCCCCCc-----cCCCHHHHHHHHHHHHHHHHHHHcCcc--ccHHHHHHh
Confidence 4579999999999999999999998 899999985 357899999999999999999999999 699999999
Q ss_pred cccc
Q psy18202 85 TAKL 88 (357)
Q Consensus 85 ~~~~ 88 (357)
+.+.
T Consensus 100 ~~~~ 103 (110)
T cd06880 100 GVRH 103 (110)
T ss_pred CCCC
Confidence 9884
No 77
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.66 E-value=2.6e-16 Score=122.88 Aligned_cols=77 Identities=40% Similarity=0.621 Sum_probs=72.4
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
..|.|+|||+||.|||+.|...+|+..+|++|+|..+ +..+.+++++|+..|+.||+.|+.||.+..++.|..||+
T Consensus 30 ~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~----~~~~~~~~~~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 30 EEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLF----GNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLE 105 (106)
T ss_pred CeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCccc----ccCCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhC
Confidence 6799999999999999999999999999999999987 446789999999999999999999999999999999986
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
.
T Consensus 106 ~ 106 (106)
T cd06093 106 L 106 (106)
T ss_pred C
Confidence 3
No 78
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.66 E-value=2.8e-16 Score=122.82 Aligned_cols=78 Identities=24% Similarity=0.360 Sum_probs=70.4
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC-ccccCChhhhccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIFL 84 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~FL 84 (357)
..|.|.|||+||.+||..|...||++.+|++|+|..+. ...+.+++++|+.+|+.||+.|+++ |.+++|+.|..||
T Consensus 30 ~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~---~~~~~~~~e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~ 106 (109)
T cd06883 30 EPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLG---RSHIKQVAERRKIELNSYLKSLFNASPEVAESDLVYTFF 106 (109)
T ss_pred CeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccC---ccchhHHHHHHHHHHHHHHHHHHcCCHHHhcCHHHHHhc
Confidence 45899999999999999999999999999999998762 2345789999999999999999998 5999999999999
Q ss_pred cc
Q psy18202 85 TA 86 (357)
Q Consensus 85 ~~ 86 (357)
.+
T Consensus 107 ~~ 108 (109)
T cd06883 107 HP 108 (109)
T ss_pred CC
Confidence 75
No 79
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.63 E-value=4.3e-16 Score=123.13 Aligned_cols=82 Identities=34% Similarity=0.547 Sum_probs=74.0
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
...|.|.|||+||.+||..|...+|+..+||+|++..+... +..+.+++++|+..|+.||+.|+.||.+..++.+..||
T Consensus 32 ~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~-~~~~~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL 110 (113)
T PF00787_consen 32 KESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNS-RNLDPEFIEERRQALEKYLQSLLSHPELRSSEALKEFL 110 (113)
T ss_dssp SSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSS-STTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHH
T ss_pred CEEEEEEEEHHHHHHHHHHHhhhhcccccccCCcccccccc-ccccHHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhc
Confidence 36899999999999999999999999999999999987311 24689999999999999999999999999999999999
Q ss_pred ccc
Q psy18202 85 TAK 87 (357)
Q Consensus 85 ~~~ 87 (357)
+.+
T Consensus 111 ~~~ 113 (113)
T PF00787_consen 111 ESS 113 (113)
T ss_dssp CT-
T ss_pred CCC
Confidence 863
No 80
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.55 E-value=1.4e-14 Score=113.07 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=70.5
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC-ccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~F 83 (357)
..++.|.|||+||.+||..|...||+..+||||+|..+ | ...++++.|+|+..|+.||+.|++. |.+++|+.+..|
T Consensus 31 ~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~-~--~~~~~~v~e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~F 107 (111)
T cd06884 31 ASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHV-G--RSNIKSVAEKRKQDIQQFLNSLFKMAEEVSHSDLVYTF 107 (111)
T ss_pred CceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceee-c--CCcchHHHHHHHHHHHHHHHHHHcCCHHHhcChHHHHh
Confidence 36789999999999999999999999999999999665 1 2346899999999999999999985 999999999999
Q ss_pred ccc
Q psy18202 84 LTA 86 (357)
Q Consensus 84 L~~ 86 (357)
+.+
T Consensus 108 F~p 110 (111)
T cd06884 108 FHP 110 (111)
T ss_pred cCc
Confidence 864
No 81
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.53 E-value=3.1e-14 Score=111.97 Aligned_cols=78 Identities=23% Similarity=0.381 Sum_probs=69.9
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCC--------CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCc-cc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLP--------SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHP-VL 74 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p--------~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp-~L 74 (357)
.++.+.|.|||+||.+||..|...|| ..++|+||++... ..+.+++++|+..|+.||+.++.+| .+
T Consensus 25 ~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~-----~~~~~~~e~R~~~L~~Yl~~Ll~~p~~i 99 (112)
T cd06890 25 DGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD-----VVNDSISLKRLNDLNEYLNELINLPAYI 99 (112)
T ss_pred CCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC-----cchhHHHHHHHHHHHHHHHHHHcCCHHh
Confidence 35788999999999999999999999 4579999987764 2468999999999999999999999 99
Q ss_pred cCChhhhccccc
Q psy18202 75 SVNSHAIIFLTA 86 (357)
Q Consensus 75 ~~~~~~~~FL~~ 86 (357)
.+|+.|..|+..
T Consensus 100 ~~s~~v~~Ff~~ 111 (112)
T cd06890 100 QTSEVVRDFFAN 111 (112)
T ss_pred ccCHHHHHHcCc
Confidence 999999999864
No 82
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.52 E-value=2.9e-14 Score=113.98 Aligned_cols=73 Identities=25% Similarity=0.264 Sum_probs=64.4
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC-ccccCChhh
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSH-PVLSVNSHA 80 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~ 80 (357)
....|.|.|||+||.+||+.|...||+...||+|+|..+ ++.+++|+++|+.+|+.||+.|+.- +.+..++.+
T Consensus 28 ~~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~----g~~~~~~ie~Rr~~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 28 LDETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLF----GNKSERVAKERRRQLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred CCcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceec----CCCCHHHHHHHHHHHHHHHHHHHHhchhccCCccc
Confidence 356799999999999999999999999889999999988 6678999999999999999999974 666666643
No 83
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=99.52 E-value=1.2e-12 Score=115.26 Aligned_cols=186 Identities=12% Similarity=0.257 Sum_probs=146.6
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhhCC----c----hhHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKER-KDYVSEAHQFAIVLNTWAGY----E----PQLSSVIRQVSKAV 191 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~-~~l~~~~~~~~~~~~~l~~~----E----~~l~~~l~~~~~~~ 191 (357)
+.+.+..++.+..++..++..++.+...+....++. ..+..++..+|.+|..||.+ + ..|+.++...|+++
T Consensus 36 ~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y 115 (237)
T PF10456_consen 36 PQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTY 115 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHH
Confidence 334556788889999999999999988888887655 44567777777777777642 1 23999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
..+++++.+ ....-...+.+.|+.|.+.+..+.++++....++..+..+ ++|... +|
T Consensus 116 ~~Ig~l~~~-Qpk~D~~pl~d~L~~Y~GlL~~~pdii~~hk~A~~k~ke~-----------~kl~~e--~K--------- 172 (237)
T PF10456_consen 116 EEIGDLFAE-QPKNDLIPLLDCLKEYRGLLSNFPDIISVHKGALQKVKEC-----------EKLSDE--GK--------- 172 (237)
T ss_dssp HHHHHHHHT-SGGGTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTCH-----------HHHHHT--TS---------
T ss_pred HHHHHHHHh-ccccchHHHHHHHHHHhhhHhhCccHHHHHHHHHHHHHHH-----------HHHHhc--cC---------
Confidence 999999887 4443335899999999999999999999887766544332 333322 11
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
+ ...+.+.+..+++.|+..+..|+..|+.+|..||+.+|..|...||.||++.++
T Consensus 173 -----------------------~--~~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~ 227 (237)
T PF10456_consen 173 -----------------------M--SQQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAE 227 (237)
T ss_dssp -----------------------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 023456677899999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy18202 352 RGN 354 (357)
Q Consensus 352 ~W~ 354 (357)
.|+
T Consensus 228 kLe 230 (237)
T PF10456_consen 228 KLE 230 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 985
No 84
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.49 E-value=5.5e-14 Score=114.10 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=66.8
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCC-----------------------------CCCCCCCCCccccchhhhcCCHHHH
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLP-----------------------------SHIIPPLPEKHSLLEHLNRYSKEFI 54 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p-----------------------------~~~iPplP~K~~~~~~~~~~~~~fi 54 (357)
....|.|.|||+||.+||..|...++ .+.+|+||.|..+ ...++++
T Consensus 33 g~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~~~~~~~~~~~~lP~lP~~~~~-----~~~~~~i 107 (140)
T cd06895 33 GQFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRSRKPEREKKNRRLPSLPALPDI-----LVSEEQL 107 (140)
T ss_pred CCEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccccccccccccccccCCCCCCcccc-----ccCHHHH
Confidence 34589999999999999999998643 2457777777754 2378999
Q ss_pred HHHHHHHHHHHHHHHcCccccCChhhhccccc
Q psy18202 55 LCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTA 86 (357)
Q Consensus 55 e~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~~ 86 (357)
++|+.+||.||+.|+.+|.+++++.+..||+-
T Consensus 108 e~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeV 139 (140)
T cd06895 108 DSRKKQLENYLQNLLKIPDYRNHPETLEFLEV 139 (140)
T ss_pred HHHHHHHHHHHHHHHcChhhhcCHHHHhhhcc
Confidence 99999999999999999999999999999974
No 85
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.47 E-value=3.8e-11 Score=103.46 Aligned_cols=182 Identities=18% Similarity=0.262 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy18202 136 SNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-----LSSVIRQVSKAVDTTASLHKNLLIEPFHEHN 210 (357)
Q Consensus 136 ~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-----l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (357)
+.++..++++.+.+..+......+......||.++..++....+ ++.++..++.++..+...... +.+.+...+
T Consensus 3 ~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~-~~~~~~~~v 81 (194)
T cd07307 3 DELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQ-LEQKLENKV 81 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34455567777777777777777888888888888888876532 688999999999999988777 777777899
Q ss_pred chhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHH
Q psy18202 211 SHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLE 289 (357)
Q Consensus 211 ~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~ 289 (357)
.+||..|. .++..++++.+.++.+..+|+.+...+.+.+....
T Consensus 82 ~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~------------------------------------ 125 (194)
T cd07307 82 IEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKK------------------------------------ 125 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------------------------------------
Confidence 99999999 99999999999999999998887666543322100
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 290 KLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 290 ~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
...++.+++.+++.++..++..+..+..++..|+..+..++...|..|+..|+.|++++.++|+.
T Consensus 126 -~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~ 190 (194)
T cd07307 126 -DSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQ 190 (194)
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 11245667778888999999999999999999999999999999999999999999999999974
No 86
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.46 E-value=2e-13 Score=107.28 Aligned_cols=78 Identities=24% Similarity=0.386 Sum_probs=69.4
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCC---------CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHH-cCcc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPS---------HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVT-SHPV 73 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~-~hp~ 73 (357)
+++++.|.|||+||..||..|...||. +++|+||+|..+ ++ .++.++|+..|+.||+.|+ ..|.
T Consensus 29 ~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~----~~--~~v~e~Rr~~L~~Yl~~Ll~lp~~ 102 (118)
T cd06887 29 DLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWF----DG--QRAAENRQGTLTEYCSTLLSLPPK 102 (118)
T ss_pred CCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCccc----Cc--chHHHHHHHHHHHHHHHHHhCCch
Confidence 356789999999999999999999996 899999999987 32 3899999999999999995 5679
Q ss_pred ccCChhhhcccccc
Q psy18202 74 LSVNSHAIIFLTAK 87 (357)
Q Consensus 74 L~~~~~~~~FL~~~ 87 (357)
+++|+.+..|+...
T Consensus 103 i~~s~~v~~Ff~~~ 116 (118)
T cd06887 103 ISRCPHVLDFFKVR 116 (118)
T ss_pred hhCCHHHHHHhCcC
Confidence 99999999999865
No 87
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.46 E-value=8.6e-12 Score=105.07 Aligned_cols=183 Identities=10% Similarity=0.187 Sum_probs=140.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERK-DYVSEAHQFAIVLNTWAGY--------EPQLSSVIRQVSKAV 191 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~-~l~~~~~~~~~~~~~l~~~--------E~~l~~~l~~~~~~~ 191 (357)
+.+.+...+.+..++...++.++.+...+....++.. .+-..+..+|.+|..|+.+ ...|++++...|+++
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~~L~~Av~~tg~~y 86 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAIAFTGEAY 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHccCCcccchHHHHHHHHHHHHH
Confidence 4566778889999999999999999888877776653 2456666777777766642 223999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
+.+++.+.++-..++ ..+.|.|+.|.+.+..+.+++.-...++. |..+.+++... ||
T Consensus 87 ~~IG~~faeQpk~Dl-~Pl~d~L~~Y~G~L~~fPDii~v~KgA~~-----------KvKE~~k~~~e--gk--------- 143 (207)
T cd07670 87 EAIGELFAEQPRQDL-DPVMDLLALYQGHLANFPDIIHVQKGALT-----------KVKESKKHVEE--GK--------- 143 (207)
T ss_pred HHHHHHHHhcchhhh-HHHHHHHHHHhCccccCCchHHHhHHHHH-----------HHHHHHHHHHh--hc---------
Confidence 999999888333333 58999999999999999999987755443 33334444322 11
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
++ ..+.+....+++.|+-.+..|+..|+..|..||+.+|..|.+.||.||++...
T Consensus 144 ----------------m~---------~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~~QI~Fyq~v~~ 198 (207)
T cd07670 144 ----------------ME---------LQKADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQIRFFQKVTQ 198 (207)
T ss_pred ----------------cc---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11245567889999999999999999999999999999999999999998765
No 88
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=99.45 E-value=1.1e-11 Score=104.79 Aligned_cols=184 Identities=11% Similarity=0.247 Sum_probs=140.1
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERK-DYVSEAHQFAIVLNTWAGY--------EPQLSSVIRQVSKAV 191 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~-~l~~~~~~~~~~~~~l~~~--------E~~l~~~l~~~~~~~ 191 (357)
+.+.+...+.+..++..+++.++.|...+....++.. .+-..+..+|.+|..||.+ +..|++++...|+++
T Consensus 7 ~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~~y 86 (207)
T cd07669 7 LQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHSFQLDPPYSSEALNNAISHTGRTY 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Confidence 4456778888999999999999998888777775553 2456667777777777642 234999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
+.+++++.+ +.......|.|.|++|.+.+..+.+++.-...+.. |..+.+++...
T Consensus 87 ~~IG~~fae-Qpk~D~~pl~d~L~~Y~GlL~~fPDii~v~K~A~~-----------KvkE~~k~~~e------------- 141 (207)
T cd07669 87 EAVGEMFAE-QPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFA-----------KVKESQRMSDE------------- 141 (207)
T ss_pred HHHHHHHHh-cchhhhhHHHHHHHHHhCcccCCccHHHHHHHHHH-----------HHHHHHHhhHH-------------
Confidence 999999887 43333358999999999999999999987655443 23333444321
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.|+. ..+++....+++.|+-.+..|+..|+..|..|++++|..|.+.||.||++...
T Consensus 142 --------------~Km~---------~~~~~~v~~R~~~isya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~ 198 (207)
T cd07669 142 --------------GRMD---------QDEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQHYLRQQIIFYQRVSQ 198 (207)
T ss_pred --------------hhhh---------hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12345677889999999999999999999999999999999999999999765
Q ss_pred c
Q psy18202 352 R 352 (357)
Q Consensus 352 ~ 352 (357)
-
T Consensus 199 k 199 (207)
T cd07669 199 Q 199 (207)
T ss_pred H
Confidence 3
No 89
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=99.44 E-value=1.4e-11 Score=104.28 Aligned_cols=184 Identities=13% Similarity=0.244 Sum_probs=140.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERK-DYVSEAHQFAIVLNTWAGY--------EPQLSSVIRQVSKAV 191 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~-~l~~~~~~~~~~~~~l~~~--------E~~l~~~l~~~~~~~ 191 (357)
+.+++...+.+..++..+++.++.+...+....++.. .+-..+..+|.+|..|+.. +..|++++...|+++
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~~L~~Ai~~tg~~y 86 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSTSGYQGETDLNDAITEAGKTY 86 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 4456677888999999999999988887777765553 2455666677777666532 234999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
+.+++++.+ +.......+.|.|+.|.+.+..+.+++.-...+.. |..+.+++... +
T Consensus 87 ~~IG~~fae-Qpk~Dl~pl~d~L~~Y~G~L~~fPDIi~v~KgA~~-----------KvkE~~k~~~e--g---------- 142 (210)
T cd07668 87 EEIASLVAE-QPKKDLHFLMETNHEYKGFLGCFPDIIGAHKGAIE-----------KVKESDKLVAT--S---------- 142 (210)
T ss_pred HHHHHHHHh-cchhhhHHHHHHHHHHhCccccCccHHHHHHHHHH-----------HHHHHHHHhhh--c----------
Confidence 999999888 44333358999999999999999999987755443 33344444432 1
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
|+. ..+++....+++.|+-.+..|+.+|+..|..||+++|..|.+.||.||++...
T Consensus 143 ---------------km~---------~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~ 198 (210)
T cd07668 143 ---------------KIT---------LQDKQNMVKRVSTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAE 198 (210)
T ss_pred ---------------cch---------hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12355667889999999999999999999999999999999999999998765
Q ss_pred c
Q psy18202 352 R 352 (357)
Q Consensus 352 ~ 352 (357)
-
T Consensus 199 k 199 (210)
T cd07668 199 K 199 (210)
T ss_pred H
Confidence 3
No 90
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.41 E-value=6.6e-13 Score=104.73 Aligned_cols=78 Identities=27% Similarity=0.505 Sum_probs=67.8
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCC---------CCCCCCCCccccchhhhcC-CHHHHHHHHHHHHHHHHHHHcC-cc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPS---------HIIPPLPEKHSLLEHLNRY-SKEFILCRMKLLDQFLRRVTSH-PV 73 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~-~~~fie~R~~~L~~fL~~i~~h-p~ 73 (357)
++.|.|.|||+||..||..|...||. ++||+||+|..+ ++. ..++.++|+..|+.||+.+++. |.
T Consensus 30 g~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~----g~s~~~~~~e~R~~~L~~Yl~~Ll~lp~~ 105 (119)
T cd06888 30 GSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILF----RRSHIRDVAVKRLKPIDEYCKALVRLPPH 105 (119)
T ss_pred CCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCccc----CcchhHHHHHHHHHHHHHHHHHHHcCCce
Confidence 45689999999999999999999996 489999999987 332 3568999999999999999987 56
Q ss_pred ccCChhhhccccc
Q psy18202 74 LSVNSHAIIFLTA 86 (357)
Q Consensus 74 L~~~~~~~~FL~~ 86 (357)
++.|+.+..|..+
T Consensus 106 Is~~~~v~~FF~p 118 (119)
T cd06888 106 ISQCDEVLRFFEA 118 (119)
T ss_pred eecCHHHHHhcCC
Confidence 7799999999865
No 91
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.40 E-value=3.8e-10 Score=98.99 Aligned_cols=197 Identities=14% Similarity=0.185 Sum_probs=150.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~ 198 (357)
-+..|+.|+.....+..++...++|.+-++.-...-+.|..+...++..+..+...+.+ +..+....-.+...+...+
T Consensus 6 ~~T~D~~fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~~~~~~~~~~~~~~e~y~~~~~~l~~~~ 85 (225)
T cd07590 6 SKTVDRELEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASGPLCEDNDELRNLVEALDSVTTQLDKTV 85 (225)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 35578999988888888888888888888888888888888888888888876655543 2233333333333333333
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
.+ +...+..++.+|+..|..+...+++++..|+.++.+|..+...+ ++|... ..
T Consensus 86 ~~-~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~-------~kl~~K----~~-------------- 139 (225)
T cd07590 86 QE-LVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKV-------EKLAEK----EK-------------- 139 (225)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHhC----cc--------------
Confidence 33 44445568999999999999999999999999999987655554 444432 00
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
.+ .+ +.++...+++++.++..|+.++..++.||+.|..-+..-+...|..|+.+|..||..+..+
T Consensus 140 ----k~----~~-~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~ 204 (225)
T cd07590 140 ----TG----PN-LAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKI 204 (225)
T ss_pred ----CC----hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11 3456677888899999999999999999999999999999999999999999999987665
No 92
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.38 E-value=1.5e-12 Score=100.37 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=66.9
Q ss_pred ceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCC-HHHHHHHHHHHHHHHHH-HHcCccccCChhhhcccc
Q psy18202 8 CIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYS-KEFILCRMKLLDQFLRR-VTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 8 ~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~-~~fie~R~~~L~~fL~~-i~~hp~L~~~~~~~~FL~ 85 (357)
+.|.|||+||..||..|...||+.++|+||+|..+ ++.+ .+..|+|+..|+.||+. +...|.+.+|+.+..|+.
T Consensus 32 ~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~----g~s~~~~vae~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~ 107 (109)
T cd07290 32 TFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVI----GRSRGEAVAERRKEELNGYIWHLIHAPPEVAECDLVYTFFH 107 (109)
T ss_pred EEEEeeHHHHHHHHHHHHHHCccccCCCCCCCccc----CccccHHHHHHHHHHHHHHHHHHHcCChheecCHHHHHhcc
Confidence 68999999999999999999999999999999876 5543 68899999999999966 567799999999999986
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
+
T Consensus 108 p 108 (109)
T cd07290 108 P 108 (109)
T ss_pred c
Confidence 4
No 93
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=99.37 E-value=8.6e-10 Score=95.90 Aligned_cols=192 Identities=13% Similarity=0.127 Sum_probs=151.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....|+.|++...-+..++...++|.+-+..-..+-+.|..+-..|+.++..+..........+.. +++.....+.+
T Consensus 7 ~~T~D~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY~p~~~~~~~~~~---v~e~~d~~~~~ 83 (211)
T cd07588 7 DETRDEVFDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKELYEPDWPGREHLAS---IFEQLDLLWND 83 (211)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHHHHHH---HHHHHHHHHHH
Confidence 445789999999999999999999999988888888889888889999998775444323333333 34444444444
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+...+...+..|+..|..++..++..+..|..++.+|..+...+ ++|... .
T Consensus 84 -l~~~l~~~Vl~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~-------~kL~~K----~----------------- 134 (211)
T cd07588 84 -LEEKLSDQVLGPLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNL-------EALKAK----K----------------- 134 (211)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH-------HHHHhc----c-----------------
Confidence 44455678999999999999999999999999999987765555 444432 0
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
..+ +.++..+|++++.++..|+.++..++.||+.|..-|..-+...|..++..|..||..+..+
T Consensus 135 -~kd-------e~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~ 198 (211)
T cd07588 135 -KVD-------DQKLTKAEEELQQAKKVYEELNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKV 198 (211)
T ss_pred -ccc-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 2345567788899999999999999999999999999999999999999999999998765
No 94
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=99.32 E-value=1.4e-09 Score=93.72 Aligned_cols=192 Identities=11% Similarity=0.131 Sum_probs=148.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....|+.|++.......++...++|.+-+..-..+-+.|..+-..|+.++..+.....+.......+++..+. ++++
T Consensus 7 e~T~D~~Fe~~errf~~lE~~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~Y~p~~~g~~~~~~~~~~~d~---~~~d 83 (211)
T cd07611 7 DETKDEQFEEYVQNFKRQETEGTRLQRELRAYLAAIKGMQEASKKLTESLHEVYEPDWYGRDDVKTIGEKCDL---LWED 83 (211)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchHHHHHhhHHH---HHHH
Confidence 4557899999888889999999999888888888888888888899999887764442222223344444443 3333
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+.+.+...+.+|+..|..+...++.++..|+.++.+|..+...+ ++|... ..
T Consensus 84 -l~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~-------~kL~~k----~~---------------- 135 (211)
T cd07611 84 -FHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHL-------EALQTS----KR---------------- 135 (211)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHhcc----cc----------------
Confidence 33334456899999999999999999999999999987755554 555432 00
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
.+ +.++..+|++++.|+..|+.++..++.||+.+..-|..-+...|..++..|..||..+..+
T Consensus 136 --kD-------e~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~ 198 (211)
T cd07611 136 --KD-------EGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVL 198 (211)
T ss_pred --cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 11 3345566777889999999999999999999999999999999999999999999998765
No 95
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=99.32 E-value=2.8e-09 Score=91.49 Aligned_cols=195 Identities=13% Similarity=0.220 Sum_probs=147.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.|....-+.+-|...+.++..++.....+...-..|-+-...|+..+...++.|.. +..+|..+|+++..+.+..+- .
T Consensus 9 rd~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa-~ 87 (219)
T PF06730_consen 9 RDSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQA-E 87 (219)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHH-H
Confidence 34445556667777777887777777776655555555556778888888888865 888999999999999877555 6
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCC
Q psy18202 203 IEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKS 282 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (357)
.+.++.++..||..|...|...++=++....+.. .--++..+++++...+ |+
T Consensus 88 v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~-------kEikq~~~Leklr~k~----ps----------------- 139 (219)
T PF06730_consen 88 VERLEAKVVEPLSQYGTICKHARDELKKFNKARN-------KEIKQLKQLEKLRQKN----PS----------------- 139 (219)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHccC----Cc-----------------
Confidence 6777889999999999999988887776654332 2234455566766542 21
Q ss_pred ccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 283 TSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 283 ~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
++. .|.+.+.++..+..+....+..+.+-+..|.++|..|++.+|.+|+..+..||-+.+++|+.
T Consensus 140 -dr~-------~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~ 204 (219)
T PF06730_consen 140 -DRQ-------IISQAESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTA 204 (219)
T ss_pred -cch-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 24455666777788888889999999999999999999999999999999999999999953
No 96
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.31 E-value=9.9e-10 Score=97.45 Aligned_cols=189 Identities=19% Similarity=0.309 Sum_probs=154.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHhhCCch---hHHHHHHHHHHHHHH
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAH-------QFAIVLNTWAGYEP---QLSSVIRQVSKAVDT 193 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~-------~~~~~~~~l~~~E~---~l~~~l~~~~~~~~~ 193 (357)
.|++|+.....+..++..+..+.+.+......-..+..... .+|.++..++.... .++..+..++.++..
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 103 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLGNALEKFGEAMQE 103 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHH
Confidence 47889999888899988888888888888877777776666 88988888765422 278899999999999
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccC
Q psy18202 194 TASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSS 273 (357)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~ 273 (357)
+...... +...+...+.+||..+..++..++.++..|+.+..+|+.+...+. ++... ++.
T Consensus 104 i~~~~~~-~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~-------k~~~~---~~~--------- 163 (229)
T PF03114_consen 104 IEEARKE-LESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLE-------KLRKK---KSK--------- 163 (229)
T ss_dssp HHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCHTT---SSB---------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhh---hcc---------
Confidence 9887766 666677789999999999999999999999999999877555543 33322 000
Q ss_pred CCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 274 TNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 274 ~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..+ +++++.++..|+.++..+..+|+.|...+...+...|..|+..|..||+.+.++|
T Consensus 164 -----------~~~-----------~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l 221 (229)
T PF03114_consen 164 -----------SSK-----------EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQIL 221 (229)
T ss_dssp -----------THH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ccc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 6678888899999999999999999988888888999999999999999999988
Q ss_pred c
Q psy18202 354 N 354 (357)
Q Consensus 354 ~ 354 (357)
.
T Consensus 222 ~ 222 (229)
T PF03114_consen 222 E 222 (229)
T ss_dssp H
T ss_pred H
Confidence 5
No 97
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=99.26 E-value=8.9e-09 Score=90.95 Aligned_cols=195 Identities=15% Similarity=0.243 Sum_probs=149.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~ 198 (357)
.+..|+.|++....+..++...++|.+.+.......+.|..+...++..|..+.....+ ..........+++.+...+
T Consensus 6 e~T~D~~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~~~~~~~~~y~~~v~~l~~~~ 85 (224)
T cd07591 6 ERTVDREFEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDKDGAMLSQEYKQAVEELDAET 85 (224)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999887654332 2122233333344443221
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
..-+...+...+..|+..+..++..++.++..|+.++.+|+.+...+.+ |... +.
T Consensus 86 ~~el~~~~~~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~k~~k-------l~~K----~~-------------- 140 (224)
T cd07591 86 VKELDGPYRQTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAARAKVRK-------LIDK----PS-------------- 140 (224)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHHHHHH-------HHhc----cc--------------
Confidence 1102222456889999999999999999999999999999887665543 3322 00
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.+ +.++..++.+.+.++..|+.++..++.||+.|..-+..-+...+..++..|..++.....
T Consensus 141 ----kd-------~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~ 202 (224)
T cd07591 141 ----ED-------PTKLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYE 202 (224)
T ss_pred ----CC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 145667778888999999999999999999999999999999999999999999876544
No 98
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.26 E-value=1.7e-11 Score=94.50 Aligned_cols=75 Identities=24% Similarity=0.377 Sum_probs=66.0
Q ss_pred ceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcC-CHHHHHHHHHHHHHHHHHHHcC-ccccCChhhhcccc
Q psy18202 8 CIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRY-SKEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIFLT 85 (357)
Q Consensus 8 ~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~-~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~FL~ 85 (357)
..|.|||++|..||..|...||.+.+|+||.|..+ |+. ..+..++|+..|+.||+.|++- |.+.+|+.+..|+.
T Consensus 32 ~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~----grs~~~~vae~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~ 107 (109)
T cd07289 32 SFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVL----GRTHIKDVAAKRKVELNSYIQSLMNSSTEVAECDLVYTFFH 107 (109)
T ss_pred EEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeee----CCCcchHHHHHHHHHHHHHHHHHHcCChhhhcChHHHHhcc
Confidence 55999999999999999999999999999999876 432 2578999999999999999865 67889999999975
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
+
T Consensus 108 p 108 (109)
T cd07289 108 P 108 (109)
T ss_pred c
Confidence 3
No 99
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=99.22 E-value=8.9e-09 Score=88.81 Aligned_cols=192 Identities=15% Similarity=0.163 Sum_probs=144.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....|+.|++...-...++...++|.+-+..-..+-+.|..+...|+.++..+.....+-...+..+.+..+... ++
T Consensus 7 e~T~D~~Fe~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~~~~~~~~v~e~~d~~~---~~ 83 (211)
T cd07612 7 VETKDEQFEQCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWDGHEDLGAIVEGEDLLW---ND 83 (211)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcccHHHHHHhccHHHH---HH
Confidence 345688898888888888888888888887777777778777778888887765433222223333444333333 33
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+...+...+.+||..|..+...++..+..|..++.+|..+...+ .+|... +
T Consensus 84 -~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~-------~kl~~k---~------------------ 134 (211)
T cd07612 84 -YEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHL-------EALQNA---K------------------ 134 (211)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHhc---c------------------
Confidence 33334457899999999999999999999999999987755544 444432 0
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
..+ +.++..++++++.|+..|+.++..++.||+.+..-|..-+...|..++..|..||..+..+
T Consensus 135 -~kD-------~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~ 198 (211)
T cd07612 135 -KKD-------DAKIAKAEEEFNRAQVVFEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKL 198 (211)
T ss_pred -ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 3456667788899999999999999999999999999999999999999999999998765
No 100
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=99.19 E-value=2.1e-08 Score=88.57 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=147.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-------------HHHHHHHHHHHH
Q psy18202 125 HSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-------------LSSVIRQVSKAV 191 (357)
Q Consensus 125 d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-------------l~~~l~~~~~~~ 191 (357)
|+.|+....-+...+..++.|.+-+.........|......|+..|..+.....+ ....+......+
T Consensus 1 D~~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 80 (216)
T cd07599 1 DEQFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKAL 80 (216)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHH
Confidence 5678888888888888889998888888888888888888999988887643211 113344455555
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
+.+...... ..+.+...+..|+..+..++..++.++..|+.++.+|+.+...+++. +... +.
T Consensus 81 ~~l~~~~~~-~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~------~~~k----~~------- 142 (216)
T cd07599 81 EELKKELLE-ELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKL------LQKK----KE------- 142 (216)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------HhcC----CC-------
Confidence 555443333 22345678999999999999999999999999999998877777551 2211 00
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.+ .+=+.++..++.+.+.++..|+.++..++.||+.|-.-...-+..++..|...|..+|..+..
T Consensus 143 -----------~~----~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~ 207 (216)
T cd07599 143 -----------LS----LKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHE 207 (216)
T ss_pred -----------CC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011344556677788899999999999999999999999999999999999999999987654
Q ss_pred c
Q psy18202 352 R 352 (357)
Q Consensus 352 ~ 352 (357)
.
T Consensus 208 ~ 208 (216)
T cd07599 208 Y 208 (216)
T ss_pred H
Confidence 3
No 101
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.15 E-value=6.7e-11 Score=94.19 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=59.6
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccc-------h---h---hh-cCCHHHHH----HHHHHHHHHHHH
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLL-------E---H---LN-RYSKEFIL----CRMKLLDQFLRR 67 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~-------~---~---~~-~~~~~fie----~R~~~L~~fL~~ 67 (357)
-.|.|.|||+||..||..|.. |...+--|||+|..-. + . +. ..+....+ .|+++|+.||+.
T Consensus 37 ~~w~V~rRy~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~~~~~~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~ 115 (135)
T cd07296 37 FTWQVKRKFKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQTIKRGEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSK 115 (135)
T ss_pred EEEEEEeehHHHHHHHHHHHh-cCCCCCCCCCcccchhhccccccccccccccCCCCCCccccccchHHHHHHHHHHHHH
Confidence 479999999999999999998 5544333567766410 0 0 00 11222333 899999999999
Q ss_pred HHcCccccCChhhhccccc
Q psy18202 68 VTSHPVLSVNSHAIIFLTA 86 (357)
Q Consensus 68 i~~hp~L~~~~~~~~FL~~ 86 (357)
|++.|..++++.+..||+.
T Consensus 116 LL~~~~~Rn~~a~~eFLeV 134 (135)
T cd07296 116 LLKMPMYRNYHATMEFIDV 134 (135)
T ss_pred HhcChhhcCCHHHHhheec
Confidence 9999999999999999974
No 102
>smart00721 BAR BAR domain.
Probab=99.14 E-value=9.1e-08 Score=85.77 Aligned_cols=194 Identities=11% Similarity=0.151 Sum_probs=147.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhhC-------Cch--hHHHHHHHHHHHH
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLY---KERKDYVSEAHQFAIVLNTWAG-------YEP--QLSSVIRQVSKAV 191 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~---k~~~~l~~~~~~~~~~~~~l~~-------~E~--~l~~~l~~~~~~~ 191 (357)
.|+.|++...-++.++..+.++.+.+.... ...+.+......|+..+..+.. .+. .+..++..++..+
T Consensus 25 ~D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (239)
T smart00721 25 LDEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEAL 104 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHH
Confidence 399999999999999999999988888887 5666666666666776666522 122 2677788888888
Q ss_pred HHHHHHHHHHhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q psy18202 192 DTTASLHKNLLIEPFHEH-NSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTA 270 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~ 270 (357)
..+...... + ...... +.+++..+...+..++..++.|+.+..+|+.+...+.+.+....+
T Consensus 105 ~~~~~~~~~-~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~---------------- 166 (239)
T smart00721 105 KKLLQVEES-L-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEK---------------- 166 (239)
T ss_pred HHHHhhHHH-H-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC----------------
Confidence 888776554 4 333334 444555777999999999999999999998876666544321100
Q ss_pred ccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 271 TSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRS 350 (357)
Q Consensus 271 ~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~ 350 (357)
+ . .+ ++.+++++++.++..|+.++..+..|+..|...+...+...|..|+..|..||+++.
T Consensus 167 ------------~--~----~~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~ 227 (239)
T smart00721 167 ------------K--K----DE-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESY 227 (239)
T ss_pred ------------C--h----hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 12 566788888999999999999999999999988888899999999999999999999
Q ss_pred hccc
Q psy18202 351 DRGN 354 (357)
Q Consensus 351 ~~W~ 354 (357)
++|+
T Consensus 228 ~~l~ 231 (239)
T smart00721 228 KLLQ 231 (239)
T ss_pred HHHH
Confidence 8875
No 103
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=99.08 E-value=1.7e-07 Score=81.14 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=138.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.|+.|++....+..++..++.+.+-+..-..+-+.+......++..+..+.....+ ....+..+..+...+....-...
T Consensus 3 ~D~~fd~~e~rF~~~e~~~~~l~kd~k~Y~~~~~~~~~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (195)
T cd07589 3 KDKEFDELEKKFGSLEKQVQLVVRNVELYLQHVQESVLVKVLALEVVLDLYPSNHPRLESKWERFRRVVRGISSKALPEF 82 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889888888888888888888888777777777766666777777666554322 22233444455544443322214
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCC
Q psy18202 203 IEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKS 282 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (357)
...+...+..|+..+..+...++.++..|..++.+|+.....+.+ +.
T Consensus 83 ~~~i~~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~~~~~k-------~~-------------------------- 129 (195)
T cd07589 83 KSRVRKLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYKEKKER-------GG-------------------------- 129 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHHHHHHh-------hc--------------------------
Confidence 555667899999999999999999999999999999886654432 11
Q ss_pred ccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 283 TSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 283 ~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
..+.+.+.+...|+.++..++.||++|..-+..-+...|..|+..|..++....+
T Consensus 130 --------------k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~ 184 (195)
T cd07589 130 --------------KVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLK 184 (195)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1355678888999999999999999999999999999999999999999987765
No 104
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=98.98 E-value=1.8e-09 Score=84.67 Aligned_cols=79 Identities=27% Similarity=0.446 Sum_probs=66.6
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCC---------CCCCCCCCccccchhhhcC--CHHHHHHHHHHHHHHHHHHHcC-
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPS---------HIIPPLPEKHSLLEHLNRY--SKEFILCRMKLLDQFLRRVTSH- 71 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~--~~~fie~R~~~L~~fL~~i~~h- 71 (357)
+++++.|.|||+||..||..|...||- ++||.||.+..+ ++. ..+--++|+..|+.|++.+++-
T Consensus 30 dgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~----~~~~~~~~~a~~R~~~L~~Y~~~Ll~lp 105 (121)
T cd06889 30 DGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSL----GSLKGSTSRSLARLKLLETYCQELLRLD 105 (121)
T ss_pred CCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCccc----CCcccccchHHHHHHHHHHHHHHHHcCC
Confidence 457789999999999999999999992 799999999886 332 2234578999999999999976
Q ss_pred ccccCChhhhccccc
Q psy18202 72 PVLSVNSHAIIFLTA 86 (357)
Q Consensus 72 p~L~~~~~~~~FL~~ 86 (357)
|.+.+|+.+..|...
T Consensus 106 ~~Is~~~~V~~FF~p 120 (121)
T cd06889 106 EKVSRSPEVIQFFAP 120 (121)
T ss_pred cceecCHHHHHhcCC
Confidence 678899999999764
No 105
>KOG3771|consensus
Probab=98.88 E-value=5.7e-07 Score=84.91 Aligned_cols=192 Identities=15% Similarity=0.167 Sum_probs=141.7
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....|+.|++...-+..++..-++|.+-+..-...-+.|..+...|...+......+-.....+..+.+..+.+- .+
T Consensus 25 ~~TkD~~FE~~~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~g~~~l~~v~~~~d~l~---~d 101 (460)
T KOG3771|consen 25 DETKDEQFEQEERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWPGRDYLQAVADNDDLLW---KD 101 (460)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHH---HH
Confidence 456688898887777777777777777666666666666666666776665544332223444555555444443 33
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+...+..++..+|..|..+...++..+..|..++++|..+...+++....+++
T Consensus 102 -~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~k-------------------------- 154 (460)
T KOG3771|consen 102 -LDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKK-------------------------- 154 (460)
T ss_pred -HHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCC--------------------------
Confidence 44445568999999999999999999999999999998776555444333311
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
+ +.++...|.+++.++..|+.++..+++||..+-.-|.--+...|..+..+|+.||+.+..+
T Consensus 155 ---d-------~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl 216 (460)
T KOG3771|consen 155 ---D-------EAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKL 216 (460)
T ss_pred ---C-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 1 1233347788899999999999999999999999999999999999999999999998554
No 106
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=98.77 E-value=2.4e-08 Score=74.22 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=63.6
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC-ccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~F 83 (357)
+....|.|+|.+|..||..|...||..++|-+|.+-.+ +..+. -++|.+.|+.||..+++- |.+.+|+.+..|
T Consensus 24 ~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~----~~~~~--~~~R~~~L~~Yl~~Ll~~~~eVa~sd~v~sF 97 (101)
T cd06896 24 NLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHL----PFTDS--DHKRVRDLNHYLEQLLSGSREVANSDCVLSF 97 (101)
T ss_pred CCcceeeecHHHHHHHHHHHHHHCccccccCCCCcccc----CcccH--HHHHHHHHHHHHHHHHccCHHHhcchHHHHH
Confidence 45668999999999999999999999999999999654 22233 367999999999998865 789999999888
Q ss_pred ccc
Q psy18202 84 LTA 86 (357)
Q Consensus 84 L~~ 86 (357)
..+
T Consensus 98 F~~ 100 (101)
T cd06896 98 FLS 100 (101)
T ss_pred hhc
Confidence 643
No 107
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.64 E-value=7.3e-05 Score=64.85 Aligned_cols=188 Identities=16% Similarity=0.239 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCc---hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYE---PQLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E---~~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
+......++.++..+.++.+....++..-+.+..+...|+.++..++..- +.++.++.+++..+..+...... +.+
T Consensus 4 l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~-L~~ 82 (200)
T cd07603 4 LEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTI-LLD 82 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 45677788999999999999999999888888888889999999988542 23889999999999999887665 666
Q ss_pred hhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 205 PFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 205 ~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
..+..+.+||..++ ..+..+|++=+.=++...+|+.+ ....-.+...
T Consensus 83 q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~a-------l~k~~~~~K~------------------------- 130 (200)
T cd07603 83 QAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNA-------LVKNAQAPRS------------------------- 130 (200)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHhccCCC-------------------------
Confidence 66678888877553 45566666555555555444442 2221111111
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
+ ..++.+...++..+...+...+=.....+...+..|..++-+.|..|...|..|+++..+.|+-
T Consensus 131 ------K-~~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~d 195 (200)
T cd07603 131 ------K-PQEAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLED 195 (200)
T ss_pred ------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 0 1244555566677777776666666667777778888899999999999999999999998863
No 108
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=98.64 E-value=1.7e-05 Score=69.34 Aligned_cols=185 Identities=14% Similarity=0.203 Sum_probs=121.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhH-----HHHHHHHHHHHHHHHhhC---CchhHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTR----LYKERK-----DYVSEAHQFAIVLNTWAG---YEPQLSSVIRQVSKA 190 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~----l~k~~~-----~l~~~~~~~~~~~~~l~~---~E~~l~~~l~~~~~~ 190 (357)
+.+..|.++...++.....+..+.+.... |.+.+- +-......+|.++..-|. .+..++.+|..+|++
T Consensus 4 ~l~ddf~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~a 83 (215)
T cd07593 4 TLSEEFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSEYGSCLSKLGRA 83 (215)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCChHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Confidence 34667877777777666666655544433 333320 011133455555544432 233499999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q psy18202 191 VDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTA 270 (357)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~ 270 (357)
..+++.+... +...+...|.+||..++. .+|++.+.|.++. ...-.++.+++.+.+-.
T Consensus 84 ~~kia~~q~~-f~~~~~~~~l~pL~~~l~---~~k~i~k~RKkLe----~rRLdyD~~ksk~~kak-------------- 141 (215)
T cd07593 84 HCKIGTLQEE-FADRLSDTFLANIERSLA---EMKEYHSARKKLE----SRRLAYDAALTKSQKAK-------------- 141 (215)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHhcc--------------
Confidence 9999998665 666666788999887764 4566666664422 22223333333332211
Q ss_pred ccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 271 TSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRS 350 (357)
Q Consensus 271 ~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~ 350 (357)
..-..++.+++.++.+|+..++.+...+..|. ....+...-|..|++.|++||+++.
T Consensus 142 ----------------------~~~~~~eeElr~Ae~kfees~E~a~~~M~~i~-~~e~e~~~~L~~lv~AQl~Yh~q~~ 198 (215)
T cd07593 142 ----------------------KEDSRLEEELRRAKAKYEESSEDVEARMVAIK-ESEADQYRDLTDLLDAELDYHQQSL 198 (215)
T ss_pred ----------------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHH
Confidence 11124677788899999999999999999996 4468899999999999999999988
Q ss_pred hc
Q psy18202 351 DR 352 (357)
Q Consensus 351 ~~ 352 (357)
++
T Consensus 199 e~ 200 (215)
T cd07593 199 DV 200 (215)
T ss_pred HH
Confidence 76
No 109
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=98.58 E-value=0.00014 Score=63.75 Aligned_cols=193 Identities=14% Similarity=0.137 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCc-----hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYE-----PQLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E-----~~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
.+.+-++.+...+.++.+....++..-..+..+...|+.++..++..- +.++.+|..++.++..+...... +..
T Consensus 6 ~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~-L~~ 84 (215)
T cd07604 6 ALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKN-LMQ 84 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 345566777778888888888888888888888888999999888642 23889999999999999988776 777
Q ss_pred hhhhhcchhHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCC
Q psy18202 205 PFHEHNSHPMKDYLMY-IDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKS 282 (357)
Q Consensus 205 ~~~~~l~~~l~~~~~~-~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (357)
+....+..||..+... +..++ ++=+.=+++..+|+.+...+.+.|....+.. |
T Consensus 85 ~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~-------------------~------ 139 (215)
T cd07604 85 NLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEA-------------------G------ 139 (215)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh-------------------h------
Confidence 7777889998888776 66666 6555556666566554322222111111000 0
Q ss_pred ccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 283 TSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 283 ~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
+-..+....++.++++.....|....-...--|...+..|..+|-+.|..|...|..|+++..++-
T Consensus 140 -----~~r~e~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll 205 (215)
T cd07604 140 -----MIRTEITGAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVI 205 (215)
T ss_pred -----hcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111224556667777777777665555666777888999999999999999999999987753
No 110
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.52 E-value=0.00014 Score=63.49 Aligned_cols=186 Identities=16% Similarity=0.272 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-------CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-------GYEPQLSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-------~~E~~l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.+..-+..++..+++|.+....++...++++.+...|+..+..++ ..++-+..++.+++..+..+...... +
T Consensus 6 ~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~-L 84 (215)
T cd07601 6 VFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHST-L 84 (215)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 445556777777888888888888888888888888888888883 12222567999999999999988776 7
Q ss_pred hhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 203 IEPFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
.+.....+..||..+. ..+..+|++=+.=++...+|+. +....-+|... +
T Consensus 85 ~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~-------al~K~~~l~k~---k------------------- 135 (215)
T cd07601 85 SSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDG-------VLSKYSRLSKK---R------------------- 135 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH-------HHHHHhhCCcC---C-------------------
Confidence 7777778999998887 7777777666555555544444 22222333221 0
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..+++ ..+++.++......+....-...--|...+..|.-++-+.|..|...|+.|+++..+.-
T Consensus 136 --~~~~~------~~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell 199 (215)
T cd07601 136 --ENTKV------KIEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMF 199 (215)
T ss_pred --CchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 12566677777777777777777778888889999999999999999999999877653
No 111
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=98.50 E-value=0.00028 Score=61.09 Aligned_cols=187 Identities=14% Similarity=0.221 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-----CCch----hHHHHHHHHHHHHHHHHHHH
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-----GYEP----QLSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-----~~E~----~l~~~l~~~~~~~~~~~~~~ 198 (357)
+.+...-++.+...+++|.+....++...++++.+...|+..+..++ ..++ .++.+|..++..+..+....
T Consensus 4 l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r 83 (207)
T cd07602 4 LHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDER 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667888888888888888888888888888888888888886 2222 27899999999999998876
Q ss_pred HHHhhhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSY 277 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~ 277 (357)
.. +.+.....+..||..+.. .+..+|+.-++=++.-..|.. .....-.|... +
T Consensus 84 ~~-L~~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~-------al~k~~~lsk~---k--------------- 137 (207)
T cd07602 84 DR-MLENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCS-------SLEKHLNLSTK---K--------------- 137 (207)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhccCCC---C---------------
Confidence 65 666666778888887755 455555554444443333322 22221222111 1
Q ss_pred cccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 278 SLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 278 ~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
. ..++.+++..+..+...+...+-...--|...+..|.-+|-+.|..|...++.|+++..++-
T Consensus 138 ------k-------~~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~ 200 (207)
T cd07602 138 ------K-------ENQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVA 200 (207)
T ss_pred ------C-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 0 12344556667777777777776666778888888999999999999999999999877653
No 112
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.50 E-value=0.00032 Score=60.80 Aligned_cols=187 Identities=14% Similarity=0.165 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HH-----HHHHHHHHHHHHHHHHHHHH
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LS-----SVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~-----~~l~~~~~~~~~~~~~~~~~ 201 (357)
+..+..-++.++..+.++.+....++.....++.+-..|+..+..++....+ +. .+|..++..+..+......
T Consensus 3 i~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~- 81 (202)
T cd07606 3 LQELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEV- 81 (202)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHH-
Confidence 3456666788888888888888888888888888888899999988765433 33 4799999999999887666
Q ss_pred hhhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 202 LIEPFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+.+.....+..||..+. .++..+|++=++=++...+|+. .....-++...
T Consensus 82 L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~-------al~K~~~l~k~---------------------- 132 (202)
T cd07606 82 LRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQ-------ARSKFLSLTKD---------------------- 132 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcccc----------------------
Confidence 76666678888888776 4455555554444444444433 22222222211
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..+. ++.+++.++..+...+....-....-|...+..|.-++-+.|..|...|+.|+++..++-
T Consensus 133 --~k~~-------~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell 196 (202)
T cd07606 133 --AKPE-------ILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELL 196 (202)
T ss_pred --CchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112 234666677777777777777777777778888899999999999999999999987753
No 113
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.47 E-value=0.00027 Score=61.21 Aligned_cols=186 Identities=12% Similarity=0.215 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY---EPQLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~---E~~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
+.++..-+..++..|.++.+....+++.-+.+.++...|+..+..+... ++-++.+|..+++++..+...... +.+
T Consensus 4 ~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~-l~~ 82 (200)
T cd07637 4 IDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMI-LFD 82 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4566677888899999998888888888888888899999888887643 223889999999999998877655 666
Q ss_pred hhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 205 PFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 205 ~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
..+..+.+||..+. ..+..+|++=++=++...+|+.+ |.+ ...+.. +
T Consensus 83 q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~a---l~k----~~~~k~----k--------------------- 130 (200)
T cd07637 83 QAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIA---LVK----NAQAPR----H--------------------- 130 (200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHH----HhhcCC----C---------------------
Confidence 66667888887553 45566666555555554444332 211 111110 1
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
.+ .++.+...++..+...|...+=.....+...+..|.-+|-+.|..|...|+.|+++..++-
T Consensus 131 k~-------~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~ 193 (200)
T cd07637 131 KP-------HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLL 193 (200)
T ss_pred Ch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 01 2345666677777777777777777888888889999999999999999999999887653
No 114
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=98.46 E-value=0.00015 Score=64.85 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=116.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhHHHHHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHH
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGT---------RLYKERKDYVSEAHQFAIVLNTWAG---YEPQLSSVIRQVSKAV 191 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~---------~l~k~~~~l~~~~~~~~~~~~~l~~---~E~~l~~~l~~~~~~~ 191 (357)
.|+.|..+...++.+...+..+.+.+. +.-++.+ ......+|.++..-|. .+..++.+|..+|++.
T Consensus 13 l~d~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~r--k~p~~~Lg~~M~~~g~~l~~~s~lg~~L~~~g~a~ 90 (244)
T cd07595 13 LSDELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLK--KLPEYGLAQSMLESSKELPDDSLLGKVLKLCGEAQ 90 (244)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhc--cCcHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 567787777777666666655554222 2222111 1123345555443332 2334999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
.+++..... +...+...|.+||...+. ..++++.+.|.++. ...-.++.++..+.+-...+ +
T Consensus 91 ~~ia~~~~~-~d~~i~~~fl~pL~~~le--~dik~i~k~RKkLe----~~RLd~D~~k~r~~ka~k~~-~---------- 152 (244)
T cd07595 91 NTLARELVD-HEMNVEEDVLSPLQNILE--VEIPNIQKQKKRLS----KLVLDMDSARSRYNAAHKSS-G---------- 152 (244)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh----hhhHHHHHHHHHHHhccccc-c----------
Confidence 999988665 444566789999998774 34445555444322 22223333333332211110 0
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
+.....|++.+ +.+++.++.+|+..++.+..+|..|- .+..++-.-|.+|+..|++||+++++
T Consensus 153 ---------~~~~~~K~~~l-------~eE~e~ae~k~e~~~e~~~~~M~~~l-~~E~e~~~~l~~lv~aQl~YH~~a~e 215 (244)
T cd07595 153 ---------GQGAAAKVDAL-------KDEYEEAELKLEQCRDALATDMYEFL-AKEAEIASYLIDLIEAQREYHRTALS 215 (244)
T ss_pred ---------ccccccccchH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112344444 44556666777777777788888875 55899999999999999999999987
Q ss_pred cc
Q psy18202 352 RG 353 (357)
Q Consensus 352 ~W 353 (357)
+-
T Consensus 216 ~L 217 (244)
T cd07595 216 VL 217 (244)
T ss_pred HH
Confidence 64
No 115
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.45 E-value=0.00042 Score=59.80 Aligned_cols=185 Identities=12% Similarity=0.208 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC--ch-hHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY--EP-QLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~--E~-~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
+.++...+..++..+.++.+....++....+++.+...|+..+..++.. .. -++.++.+++.++..+...... +.+
T Consensus 4 i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~-L~~ 82 (200)
T cd07638 4 LEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTI-LFD 82 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4567788899999999999999999999999999999999999888532 22 2789999999999999887665 666
Q ss_pred hhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 205 PFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 205 ~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
.....+..||..+. ..+..+|+.=++=++ +.+ +.-..+.|....+
T Consensus 83 q~~~~l~~~L~~F~k~dl~~vke~kk~FdK-------~s~---~~~~aL~K~~~~~------------------------ 128 (200)
T cd07638 83 QAQRSIKAQLQTFVKEDLRKFKDAKKQFDK-------VSE---EKENALVKNAQVQ------------------------ 128 (200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HhH---HHHHHHHHhccCC------------------------
Confidence 66667777777653 233444443332222 221 1222223322110
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
..| ..+++++..++..+...+....-....-|...+..|.-+|-+.|..|...|+.|+++..+.
T Consensus 129 -k~k----~~e~eEa~~~l~~~r~~F~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el 192 (200)
T cd07638 129 -RNK----QHEVEEATNILTATRKCFRHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDL 192 (200)
T ss_pred -cCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 011 2455677777888888888777777778888889999999999999999999999987765
No 116
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.43 E-value=0.00045 Score=59.59 Aligned_cols=186 Identities=12% Similarity=0.195 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-Cch--hHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-YEP--QLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-~E~--~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
+.++..-++.++..|+++.+....++..-++++.+-..|+..+..++. +.. .++.+|.+++..+..+...... +.+
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~-Ll~ 82 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAE-LLE 82 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 456667788899999999999999999999999999999999999886 322 2889999999999988777655 555
Q ss_pred hhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 205 PFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 205 ~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
+....+..+|..+. ..+..+|++=++=++....|+.+ |.|. .++..
T Consensus 83 ~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~a---l~K~----~~~~k-------------------------- 129 (200)
T cd07639 83 ATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAA---LQHN----AETPR-------------------------- 129 (200)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHH---HHHH----hhccc--------------------------
Confidence 55567777777554 35566776666656655555543 2111 11110
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
.| ..+++++..++.....-|....-....-|...+..|..++-+.|..|...+..|+++..++-
T Consensus 130 --~k----~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell 193 (200)
T cd07639 130 --RK----AQEVEEAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEAL 193 (200)
T ss_pred --cc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 12556777777877777777777777788888889999999999999999999999887654
No 117
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=98.42 E-value=4.8e-07 Score=70.64 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=57.5
Q ss_pred cceeecchhhHHHHHHHHHHhCCCCCCCCCCCcccc-----ch------hhhcCC---HHHHHHHHHHHHHHHHHHHcCc
Q psy18202 7 ECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSL-----LE------HLNRYS---KEFILCRMKLLDQFLRRVTSHP 72 (357)
Q Consensus 7 ~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~-----~~------~~~~~~---~~fie~R~~~L~~fL~~i~~hp 72 (357)
.|.|.|||.+|..||..|...=...-|||+|..... .+ .+.+-+ .+=+..|++.||.||++|+..|
T Consensus 36 ~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~~~~~~mP~LP~~~~~~~~~~~sr~kqLE~YLn~LL~~~ 115 (130)
T cd07297 36 TWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLEGLTEEMPSLPGTDREASRRTASKPKYLENYLNNLLENS 115 (130)
T ss_pred EEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccccccCcCCCCCCCCchhhhhhhhHHHHHHHHHHHHhcch
Confidence 689999999999999999874434444555522210 00 011111 2335678999999999999999
Q ss_pred cccCChhhhccccc
Q psy18202 73 VLSVNSHAIIFLTA 86 (357)
Q Consensus 73 ~L~~~~~~~~FL~~ 86 (357)
.-++.+....||+.
T Consensus 116 ~YRn~~atleFLeV 129 (130)
T cd07297 116 FYRNYHAMMEFLAV 129 (130)
T ss_pred hhcCChhheeeeec
Confidence 99999999999974
No 118
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=98.35 E-value=0.00044 Score=61.09 Aligned_cols=190 Identities=13% Similarity=0.163 Sum_probs=116.1
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hh--------------HHHHHHHHHHHHHHHHhhCC---chh
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYK----ER--------------KDYVSEAHQFAIVLNTWAGY---EPQ 179 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k----~~--------------~~l~~~~~~~~~~~~~l~~~---E~~ 179 (357)
..+.|+.|.++...++.....+..+.+......+ .| ..+. ....+|.++..-|.. +..
T Consensus 12 kTe~d~df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~-~~e~Lg~~M~~~g~~lg~~S~ 90 (229)
T cd07594 12 KTEYDAHFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLS-NLEQLGQAMIEAGNDFGPGTA 90 (229)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCC-cHHHHHHHHHHHHhhCCCCCc
Confidence 3456777877777666666655555444433331 00 0011 123455555554421 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKD 259 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~ 259 (357)
++.+|..+|++..+++.+... +...+...|.+||+.++. ..++++.+.|.++ +...-.++.++..+.+-..
T Consensus 91 ~g~aL~~~g~a~~kia~~~~~-~~~~i~~~fl~pL~~~l~--~dik~i~k~RKkL----e~rRLd~D~~k~r~~kAk~-- 161 (229)
T cd07594 91 YGSALIKVGQAQKKLGQAERE-FIQTSSSNFLQPLRNFLE--GDMKTISKERKLL----ENKRLDLDACKTRVKKAKS-- 161 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCC--
Confidence 999999999999999988655 555566789999998765 3445555555432 2222233333333322111
Q ss_pred CCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 260 SDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
.++ +..++.+++.++.+|+.-++.+..=+..+... ..+-..-|.+|+
T Consensus 162 -------------------------~~~-------~~~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~-~~~~~~~L~~lv 208 (229)
T cd07594 162 -------------------------AEA-------IEQAEQDLRVAQSEFDRQAEITKLLLEGISST-HANHLRCLRDFV 208 (229)
T ss_pred -------------------------ccc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHH
Confidence 111 23456667777888888887777777777533 467788899999
Q ss_pred HHHHHHHHHHHhcc
Q psy18202 340 DQQIAYYQQRSDRG 353 (357)
Q Consensus 340 ~~qi~~~~~~~~~W 353 (357)
..|++||+++.++-
T Consensus 209 ~AQl~Yh~q~~e~L 222 (229)
T cd07594 209 EAQMTYYAQCYQYM 222 (229)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
No 119
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.32 E-value=0.00054 Score=60.91 Aligned_cols=197 Identities=13% Similarity=0.125 Sum_probs=112.8
Q ss_pred cC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhH-----HHHHHHHHHHHHHHHhhCCchhHHHHHHH
Q psy18202 122 RH-HHSEFEQFSQYISNLYEKISAFEKIGTRLY---------KERK-----DYVSEAHQFAIVLNTWAGYEPQLSSVIRQ 186 (357)
Q Consensus 122 ~e-~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~---------k~~~-----~l~~~~~~~~~~~~~l~~~E~~l~~~l~~ 186 (357)
.+ .|+.|.++...++.....+..+.+.+.... ++.+ -|+..|.+.|..| +.+..++.+|..
T Consensus 10 Te~ld~~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~el----g~~s~lg~aL~~ 85 (248)
T cd07619 10 TEVLSEDLLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVL----GDDSLLGKMLKL 85 (248)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhc----CCCchHHHHHHH
Confidence 45 377888887777766665555544333221 1111 1444444444433 123449999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy18202 187 VSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPT 266 (357)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~ 266 (357)
+|.+..+++..... +-..+...|.+||+.+.. ..++++.+.|.++ +...-.++.+|..+..-... ++
T Consensus 86 ~gea~~kla~a~~~-~d~~i~~~fl~PL~~~le--~dlk~I~k~RK~L----e~~RLD~D~~K~r~~~a~~~----~~-- 152 (248)
T cd07619 86 CGETEDKLAQELIL-FELQIERDVVEPLYVLAE--VEIPNIQKQRKHL----AKLVLDMDSSRTRWQQSSKS----SG-- 152 (248)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHH----HhhHhhHHHHHHHHHhcccc----cc--
Confidence 99999999987655 444556789999997765 4556666666542 22333444444433221110 00
Q ss_pred CCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 267 SSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYY 346 (357)
Q Consensus 267 ~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~ 346 (357)
+ +.+ ..+...+.+.++. +++.++++++...+....++-.|- .+..+.-+-|.+|+..|++||
T Consensus 153 --~------~~~--~~~~~~k~e~lr~-------e~E~ae~~~e~~kd~~~~~m~~~l-~~e~e~~~~l~~Lv~AQleYH 214 (248)
T cd07619 153 --L------SSN--LQPTGAKADALRE-------EMEEAANRMEICRDQLSADMYSFV-AKEIDYANYFQTLIEVQAEYH 214 (248)
T ss_pred --c------ccc--ccCCCCccHHHHH-------HHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 0011123344444 445555555555455556666664 446777777999999999999
Q ss_pred HHHHhcc
Q psy18202 347 QQRSDRG 353 (357)
Q Consensus 347 ~~~~~~W 353 (357)
++.+++-
T Consensus 215 r~A~eiL 221 (248)
T cd07619 215 RKSLELL 221 (248)
T ss_pred HHHHHHH
Confidence 9988764
No 120
>KOG1259|consensus
Probab=98.31 E-value=8.3e-07 Score=79.75 Aligned_cols=62 Identities=31% Similarity=0.446 Sum_probs=51.5
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSH 71 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~h 71 (357)
.-+|.|.|||+||..||+.|...-. +----||||..+ |+..+.|+|+|+..|+.||+.++..
T Consensus 38 ~~ew~v~~ry~df~~lheklv~e~~-i~k~llppkk~i----g~~~~s~~e~r~~~leiylq~ll~~ 99 (490)
T KOG1259|consen 38 KVEWLVERRYRDFANLHEKLVGEIS-ISKKLLPPKKLV----GNKQPSFLEQRREQLEIYLQELLIY 99 (490)
T ss_pred ceeeeehhhhhHHHHHHHHhhhhhe-eccccCCchhhc----CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999986542 222347889887 7789999999999999999998754
No 121
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.29 E-value=0.00089 Score=59.29 Aligned_cols=205 Identities=11% Similarity=0.151 Sum_probs=112.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHH-
Q psy18202 125 HSEFEQFSQYISNLYEKISAFEKIGTRLY---------KERKDYVSEAHQFAIVLNTWAGY---EPQLSSVIRQVSKAV- 191 (357)
Q Consensus 125 d~~f~~~~~~~~~l~~~l~~l~~~~~~l~---------k~~~~l~~~~~~~~~~~~~l~~~---E~~l~~~l~~~~~~~- 191 (357)
++.|.++...++.+...+..+.+.+.... ++.+.+ ....+|.++..-+.- +..++.+| .++..+
T Consensus 14 ~edl~~iEkrvD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKl--pe~~Ls~~M~es~keLg~dS~lg~aL-e~~~~~e 90 (257)
T cd07620 14 TEDLVLVEQRVEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKL--PLMALSISMAESFKDFDAESSIRRVL-EMCCFMQ 90 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhc--cHhHHHHHHHHHHhhCCCcchHHHHH-HHHHHHH
Confidence 55677776666665555544433322111 111111 123344444333221 22388888 777777
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
..++..... +-..+...|.+||..... .-++++.+.|.++.. ..-+++.+|....+-... ++. |++...+
T Consensus 91 ~~LA~~l~~-~E~~Ve~~vl~PL~~L~e--~dL~~I~k~rKkL~k----~~LD~D~~K~R~~~a~k~-s~~--~~~~~~~ 160 (257)
T cd07620 91 NMLANILAD-FEMKVEKDVLQPLNKLSE--EDLPEILKNKKQFAK----LTTDWNSAKSRSPQAAGR-SPR--SGGRSEE 160 (257)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhHH--hhHHHHHHHHHHHHh----HHhhHHHHHHHHHHhhcc-ccC--Ccccccc
Confidence 777777555 444556789999987765 567788887766433 333444444433322111 011 1100000
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
..+ ..+.....|++.++.+ ++.+..+++...+....++=.|- .+..++.+-|..|++.|.+||++.+.
T Consensus 161 ~~~----~~~~~~~~K~~~lkeE-------~eea~~K~E~~kd~~~a~Mynfl-~kE~e~a~~l~~lveaQ~~YHrqsl~ 228 (257)
T cd07620 161 VGE----HQGIRRANKGEPLKEE-------EEECWRKLEQCKDQYSADLYHFA-TKEDSYANYFIRLLELQAEYHKNSLE 228 (257)
T ss_pred ccc----cccccccccccccHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0011112454455544 44555556555566667888885 66899999999999999999999988
Q ss_pred ccc
Q psy18202 352 RGN 354 (357)
Q Consensus 352 ~W~ 354 (357)
+-+
T Consensus 229 ~Le 231 (257)
T cd07620 229 FLD 231 (257)
T ss_pred HHH
Confidence 753
No 122
>KOG3784|consensus
Probab=98.28 E-value=1.6e-06 Score=80.20 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=71.5
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+.+.+.+||+.+..||+.|..++-+..+|+.|+|..+ .+++.-++.||..|+.||+.+++||.++.+..+..||.
T Consensus 26 G~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f-----~L~~~~~~~rr~~leqylqa~~q~~~l~~s~~~~~fL~ 100 (407)
T KOG3784|consen 26 GRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLF-----KLTPQQLDSRRRGLEQYLQAVCQDPVLARSELVQKFLM 100 (407)
T ss_pred ceeEEEEehHHHHhHHHHHHHHhhcccCCCCCccccc-----CCChhhhHHHHHHHHHHHHHHhcCccccchhhhhHHHH
Confidence 4567889999999999999999999999999999987 46788899999999999999999999999999999997
Q ss_pred ccc
Q psy18202 86 AKL 88 (357)
Q Consensus 86 ~~~ 88 (357)
...
T Consensus 101 ~~q 103 (407)
T KOG3784|consen 101 RAQ 103 (407)
T ss_pred hcc
Confidence 653
No 123
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=98.23 E-value=0.00057 Score=59.90 Aligned_cols=141 Identities=9% Similarity=0.123 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 164 HQFAIVLNTWAG---YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240 (357)
Q Consensus 164 ~~~~~~~~~l~~---~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~ 240 (357)
..+|.++..-|. .+..++.+|..+|.+..+++..... +.......|.+||.... -..++++.+.|.+
T Consensus 67 ~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~A~~kla~~~~~-~~~~v~~~fl~pL~~~l--~~dik~i~k~RKk------- 136 (223)
T cd07615 67 GLLGDCMLRYGRELGEESTFGNALLDVGESMKQMAEVKDS-LDINVKQNFIDPLQLLQ--DKDLKEIGHHLKK------- 136 (223)
T ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------
Confidence 345555544432 1334999999999999999988665 55566678999998552 2444555554433
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDL 320 (357)
Q Consensus 241 ~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El 320 (357)
|+.+|-..+-..... ++ ..+.+++.++.+|+..++.+...+
T Consensus 137 ----Le~rRLd~D~~K~r~-~k----------------------------------~~~eE~~~A~~kfees~E~a~~~M 177 (223)
T cd07615 137 ----LEGRRLDFDYKKKRQ-GK----------------------------------IPDEEIRQAVEKFEESKELAERSM 177 (223)
T ss_pred ----HHHHHHHHHHHHHcC-CC----------------------------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222111110 00 015567888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 321 ERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 321 ~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
..|. +...+.-.-|..|++.|++||++++++-+
T Consensus 178 ~n~l-e~e~e~~~~L~~lv~AQl~Yh~~a~eiL~ 210 (223)
T cd07615 178 FNFL-ENDVEQVSQLSVLIEAALDYHRQSTEILE 210 (223)
T ss_pred HHHH-HcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 45789999999999999999999988743
No 124
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=98.21 E-value=0.00092 Score=59.58 Aligned_cols=194 Identities=11% Similarity=0.131 Sum_probs=117.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhHHHHHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHH
Q psy18202 125 HSEFEQFSQYISNLYEKISAFEKIGTRL---------YKERKDYVSEAHQFAIVLNTWAG---YEPQLSSVIRQVSKAVD 192 (357)
Q Consensus 125 d~~f~~~~~~~~~l~~~l~~l~~~~~~l---------~k~~~~l~~~~~~~~~~~~~l~~---~E~~l~~~l~~~~~~~~ 192 (357)
++.|.++...++.....+..+.+.+... -+.++.+ ....+|..+..-+. .+..++.+|...|.+..
T Consensus 14 ~~~~~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~--p~~~Lgq~M~e~~~~lg~~s~~g~aL~~~gea~~ 91 (246)
T cd07618 14 SEDLLQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKL--PLTALAQNMQEGSAQLGEESLIGKMLDTCGDAEN 91 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 4477777777666655555444333222 1222222 13344444443322 13338899999999999
Q ss_pred HHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccc
Q psy18202 193 TTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATS 272 (357)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~ 272 (357)
++++.... .-..+...|.+||..++. ..++++.+.|.++ +...-.++.+|..+.+-... .
T Consensus 92 kla~~~~~-~d~~ie~~fl~PL~~~le--~dlk~I~K~RkkL----e~~RLD~D~~K~r~~~a~~~-----~-------- 151 (246)
T cd07618 92 KLAFELSQ-HEVLLEKDILDPLNQLAE--VEIPNIQKQRKQL----AKLVLDWDSARGRYNQAHKS-----S-------- 151 (246)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHH----HhHHhhHHHHHHHHHhcccc-----C--------
Confidence 99966433 222344589999988765 5566777766553 23334455555444322111 0
Q ss_pred CCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 273 STNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 273 ~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
|.+ ..+...|+..|+.++++++.+++.+++.+.. ++-.|- .+..++-+.|.+|+..|++||++.+++
T Consensus 152 ---~~~--~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~-------dm~~~l-~~e~e~~~~l~~lv~aQ~eYHr~a~e~ 218 (246)
T cd07618 152 ---GTN--FQAMPSKIDMLKEEMDEAGNKVEQCKDQLAA-------DMYNFA-SKEGEYAKFFVLLLEAQADYHRKALAV 218 (246)
T ss_pred ---ccc--cccccchhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0122367777787777777777777766533 666663 778999999999999999999998876
Q ss_pred c
Q psy18202 353 G 353 (357)
Q Consensus 353 W 353 (357)
-
T Consensus 219 L 219 (246)
T cd07618 219 I 219 (246)
T ss_pred H
Confidence 4
No 125
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=98.14 E-value=0.0014 Score=57.83 Aligned_cols=140 Identities=11% Similarity=0.178 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 164 HQFAIVLNTWAG---YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240 (357)
Q Consensus 164 ~~~~~~~~~l~~---~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~ 240 (357)
..+|.++..-|. .+..++.+|..+|++..+++.+... +...+...|.+||+... -..++++.+.|.++..
T Consensus 67 ~~Lg~~M~~~g~elg~~S~~G~aL~~~g~a~~kIa~~~~~-~d~~v~~~fl~pL~~~l--~~dik~i~k~RKkLe~---- 139 (223)
T cd07592 67 GLLGEVMLKYGRELGEDSNFGQALVEVGEALKQLAEVKDS-LDDNVKQNFLDPLQQLQ--DKDLKEINHHRKKLEG---- 139 (223)
T ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----
Confidence 345555544432 1234999999999999999988655 55556678999988652 2445555555544221
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDL 320 (357)
Q Consensus 241 ~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El 320 (357)
..-.++.++... . + ..+.+++.++.+|+..++.+...+
T Consensus 140 rRLdyD~~k~k~---~-----k----------------------------------~~eeEl~~Ae~kfe~s~E~a~~~M 177 (223)
T cd07592 140 RRLDYDYKKRKQ---G-----K----------------------------------GPDEELKQAEEKFEESKELAENSM 177 (223)
T ss_pred HHHHHHHHHHhc---c-----c----------------------------------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222111 0 0 024667888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 321 ERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 321 ~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..|-. ...+..+.|..|++.|++||+++.++-
T Consensus 178 ~~il~-~e~e~~~~L~~lveAQl~Yh~~~~e~L 209 (223)
T cd07592 178 FNLLE-NDVEQVSQLSALVEAQLDYHRQSAEIL 209 (223)
T ss_pred HHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99974 468999999999999999999998763
No 126
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=98.14 E-value=0.0034 Score=55.61 Aligned_cols=194 Identities=9% Similarity=0.113 Sum_probs=126.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHHHHH
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~~~~ 201 (357)
.|++++.--+-+.........+.+.++.+..+-..++.....||..|..+|.-|++ ++..+..+|++...++..-..
T Consensus 31 ~D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~~~~~~~~~~~~- 109 (229)
T PF06456_consen 31 VDDELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGEAQRSLAKQGET- 109 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 46677766677777788888899999999999999999999999999999986654 899999999888777654222
Q ss_pred hhhhhhhhcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 202 LIEPFHEHNSHPMKDY-LMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~-~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+...+. .|...+.-+ -+-+.-.+.++++-+.+-.+| ...+..++.+.... + | . .
T Consensus 110 L~~~l~-~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY-------~ay~~~lke~~~e~-~--~-~-------~------ 164 (229)
T PF06456_consen 110 LLKALK-RFLSDLNTFRNKAIPDTLLTIKKYEDARFEY-------DAYRLWLKEMSDEL-D--P-D-------T------ 164 (229)
T ss_dssp HHHHHH-HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH--T-S--T-S-------S------
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccc-C--c-h-------h------
Confidence 222221 222222222 112222333344444444444 44444444443210 0 0 0 0
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.....+.+ ..+..+..++.+|+.....+..=++-....|..+|...|.-|...-..|+.++.+
T Consensus 165 -~~~~~~~r-------~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~ 227 (229)
T PF06456_consen 165 -AKQEPKFR-------VAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQ 227 (229)
T ss_dssp -TTCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hcccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 00013333 3344567888899999999999999999999999999999999999999988765
No 127
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=98.13 E-value=0.0043 Score=53.32 Aligned_cols=192 Identities=11% Similarity=0.125 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy18202 126 SEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEP 205 (357)
Q Consensus 126 ~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 205 (357)
.+++.--+.+.........+.+.++++..+-..++.+...||..|..+|.-+++++..+..+++....++..-.
T Consensus 2 ~eLeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p~l~~af~~~aet~k~l~kng~------ 75 (201)
T cd07660 2 LELEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQKSPELQEEFTYNAETQKLLCKNGE------ 75 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHH------
Confidence 34444455566777777888888999999999999999999999999999888888888877777666554322
Q ss_pred hhhhcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCcc
Q psy18202 206 FHEHNSHPMKDYLMYIDAVKQ-VLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTS 284 (357)
Q Consensus 206 ~~~~l~~~l~~~~~~~~a~k~-~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 284 (357)
.+..+|..+...+.-+.+ ++..-..-...|+.+.-+....+...+.+..+.. + ...
T Consensus 76 ---~Ll~al~~f~s~l~T~~~kai~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~---------------~-----~~~ 132 (201)
T cd07660 76 ---TLLGALNFFVSSLNTLVNKTMEDTLMTVKQYESARIEYDAYRNDLEALNLGPR---------------D-----AAT 132 (201)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhHhHHHHhccHHHcccCCC---------------c-----cch
Confidence 233333333333322220 1111111222344444444444444454443300 0 001
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..|++. ++.++..++++|+.....+..=++-....|..+|..-|.-|......|+..+.+.-
T Consensus 133 l~r~~~-------~q~~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L 194 (201)
T cd07660 133 SARLEE-------AQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQL 194 (201)
T ss_pred HhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 134443 55667888899999999999999999999999999999999999999988776653
No 128
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=98.12 E-value=0.00053 Score=60.17 Aligned_cols=181 Identities=10% Similarity=0.157 Sum_probs=109.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-------------h---H--HHHHHHHHHHHHHHHhhCC---c
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYK----E-------------R---K--DYVSEAHQFAIVLNTWAGY---E 177 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k----~-------------~---~--~l~~~~~~~~~~~~~l~~~---E 177 (357)
+-|+.|.++...++.....+..+.+.+..... . + + .+-.....+|.++..-|.. +
T Consensus 4 ~ld~~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~d 83 (223)
T cd07614 4 KLDDDFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDE 83 (223)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCC
Confidence 45667777766666665555554443332221 0 0 0 0112234455555554422 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 178 PQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 178 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
..++.+|..+|++..+++..... +...+...|.+||+.++. ..++++.+.|.++.. ..-.++-++. ++
T Consensus 84 S~~G~aL~~~G~a~~kia~~~~~-~d~~i~~~fl~pL~~~le--~dik~i~k~RKkLe~----rRLdyD~~K~---r~-- 151 (223)
T cd07614 84 SNFGDALLDAGESMKRLAEVKDS-LDIEVKQNFIDPLQNLCD--KDLKEIQHHLKKLEG----RRLDFDYKKK---RQ-- 151 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHH---cC--
Confidence 34999999999999999988665 555566789999987752 333444444433211 1111221221 11
Q ss_pred cCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 258 KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
++. .++++..+..+|+..++.+...+..|. ....+..+-|..
T Consensus 152 ---~k~----------------------------------~eeelr~a~ekFees~E~a~~~M~~il-~~e~e~~~~L~~ 193 (223)
T cd07614 152 ---GKI----------------------------------PDEELRQAMEKFEESKEVAETSMHNLL-ETDIEQVSQLSA 193 (223)
T ss_pred ---CCC----------------------------------chHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHH
Confidence 000 024455566688888888888999886 447889999999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy18202 338 IADQQIAYYQQRSDRG 353 (357)
Q Consensus 338 ~a~~qi~~~~~~~~~W 353 (357)
|++.|++||+++.++-
T Consensus 194 lveAQl~Yh~qa~eiL 209 (223)
T cd07614 194 LVDAQLDYHRQAVQIL 209 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
No 129
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=98.09 E-value=0.0054 Score=53.11 Aligned_cols=183 Identities=15% Similarity=0.164 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-----CCchh----HHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 132 SQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-----GYEPQ----LSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 132 ~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-----~~E~~----l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
..-+++....+++|.+....++..-+.++.+...|+..+..++ ..+.+ ++..|..++..+..+.+.... +
T Consensus 8 e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~-L 86 (207)
T cd07635 8 EAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREI-M 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3345555555666666666666666677777777777777776 22221 567788888888877766554 5
Q ss_pred hhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 203 IEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
.......+..||..+.. .+..+|+.-+.=++ ..+.+.......-.|... +.
T Consensus 87 ~~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK-------~se~~~~Al~K~~~ls~k---kk------------------ 138 (207)
T cd07635 87 ALNVTETLIKPLERFRKEQLGAVKEEKKKFDK-------ETEKNYSLLEKHLNLSAK---KK------------------ 138 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhccCC---CC------------------
Confidence 55555566777765532 23333333332222 222222222221122111 00
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
+.++.+++..+......+...+=...--|...+..|.-+|.+.|..|...++.|+++..++-
T Consensus 139 ----------~~e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~ 200 (207)
T cd07635 139 ----------EPQLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELA 200 (207)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 12445667777777777777777777788888899999999999999999999999877653
No 130
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=98.06 E-value=0.0063 Score=52.69 Aligned_cols=185 Identities=15% Similarity=0.180 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-----CCchh----HHHHHHHHHHHHHHHHHHHHH
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-----GYEPQ----LSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-----~~E~~----l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....-++++...++.+.+....++...++++.+...|+..+..++ ..+.+ ++.+|..++..+..+.+....
T Consensus 6 ~~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~ 85 (207)
T cd07636 6 SHEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTR 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777777777777777788888888776 33222 778999999999988877555
Q ss_pred HhhhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSL 279 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~ 279 (357)
+.+.....+..+|..+.. .+..+|+.-++=++.-..|+. . ++|....++.+.
T Consensus 86 -L~~qa~~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~-------a---l~k~~~ls~k~K---------------- 138 (207)
T cd07636 86 -MIENASEVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCA-------V---LEKHLNLSSKKK---------------- 138 (207)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHH-------H---HHHHhcCcccCC----------------
Confidence 655555567777765532 334444444433333322222 2 222222110000
Q ss_pred cCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 280 WKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 280 ~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..++++++..+......|..++-...--|...+..|.-++.+.|..|...+.-|+.+..++-
T Consensus 139 ------------~~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~ 200 (207)
T cd07636 139 ------------ESQLHEADSQVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELA 200 (207)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 12466667777777777777777777788888999999999999999999999999877653
No 131
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=98.05 E-value=0.0035 Score=54.96 Aligned_cols=125 Identities=10% Similarity=0.131 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 179 QLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 179 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
.++.+|..+|.+..+++..... +...+...|.+||..+. -..+|++.+.|.++.. ..-+++.++. ++.
T Consensus 85 ~~G~aL~~~G~A~~kla~~~~~-~~~~i~~~fl~PL~~~~--~~dik~i~k~RKkLe~----rRLd~D~~K~---r~~-- 152 (223)
T cd07613 85 NFGPALGDVGEAMRELSEVKDS-LDMEVKQNFIDPLQNLH--DKDLREIQHHLKKLEG----RRLDFDYKKK---RQG-- 152 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----HHHhHHHHHH---hCC--
Confidence 3999999999999999988665 55566678999998763 3455555555544221 1112222211 110
Q ss_pred CCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 259 DSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
+ + .+.+++.++.+|+..++.+...+..|... ..+.-+-|.+|
T Consensus 153 ---k-------------------------~---------~eeElr~A~~kFees~E~a~~~M~n~l~~-e~e~~~~L~~f 194 (223)
T cd07613 153 ---K-------------------------I---------PDEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSAL 194 (223)
T ss_pred ---C-------------------------C---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHH
Confidence 0 0 15667888888988888888888888644 45777799999
Q ss_pred HHHHHHHHHHHHhcc
Q psy18202 339 ADQQIAYYQQRSDRG 353 (357)
Q Consensus 339 a~~qi~~~~~~~~~W 353 (357)
++.|++||+++.++-
T Consensus 195 veAQl~Yh~qa~eiL 209 (223)
T cd07613 195 VQAQLEYHKQATQIL 209 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
No 132
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=98.04 E-value=0.0068 Score=52.43 Aligned_cols=189 Identities=15% Similarity=0.178 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC-----chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY-----EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEH 209 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~-----E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (357)
++.=...|.++.+.++.|..+-+....+-..|..++..||.. +++++.+|..+|.....+..+... +.++....
T Consensus 11 l~~d~~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~-L~~~~~~~ 89 (215)
T cd07642 11 LDVDRTVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKN-LVQNMNNI 89 (215)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333345667788888888888888888888888888888863 344999999999999999988776 77777778
Q ss_pred cchhHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHH
Q psy18202 210 NSHPMKDYLM-YIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDR 287 (357)
Q Consensus 210 l~~~l~~~~~-~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~k 287 (357)
+.-|+..++. .+..+| ++=+.=+++..+|+.+..... +.+...+ |. .|.+ +
T Consensus 90 I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~e-----k~~r~~~---K~-----------~~~~--------~ 142 (215)
T cd07642 90 ITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIE-----KEKKEHA---KM-----------HGMI--------R 142 (215)
T ss_pred HHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----hhhhccC---Cc-----------cccc--------h
Confidence 8889988888 888887 666556777777776532111 1111111 10 0110 0
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
. +..=+++.++.+.....|....-.-.--+.-.+..+..++-..+..|-..|..|+++.++.-+
T Consensus 143 ~---e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le 206 (215)
T cd07642 143 T---EISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVE 206 (215)
T ss_pred h---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000012223333344443333222222344466778899999999999999999999877643
No 133
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=98.00 E-value=0.008 Score=51.84 Aligned_cols=193 Identities=10% Similarity=0.103 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 126 SEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQL-SSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 126 ~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l-~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
.+++.--+.+.........+.+.++++..+-..++.....||..|..+|.-++.+ +..+..+|++...++..-.
T Consensus 2 ~eL~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~~~a~~~f~~~~~a~r~~~k~g~----- 76 (203)
T cd00011 2 LELELQLELLRETKRKYESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDPELAGEEFGYNAEAQKLLCKNGE----- 76 (203)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHH-----
Confidence 3444444555666667778888888899899999999999999999999999887 5778888887766654211
Q ss_pred hhhhhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 205 PFHEHNSHPMKDYLMYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 205 ~~~~~l~~~l~~~~~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
.+..+|..+...+.-+. .++..-..-...|+.+.-+..........+... ..|
T Consensus 77 ----~ll~~l~~~~~~l~T~~~kai~DT~lTI~~ye~aR~EY~a~~l~~ke~~~e----~~~------------------ 130 (203)
T cd00011 77 ----TLLGAVNFFVSSINTLVTKAIEDTLLTVKQYEAARLEYDAYRLDLKELSLE----PRD------------------ 130 (203)
T ss_pred ----HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhHHHHHHHHHHhccc----CCc------------------
Confidence 23333333333333222 011111111223444444444444444443221 000
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
+ +..-..++..+...++.++.+|+.....+..=|+--...|..+|...|..|...-..|+.++...
T Consensus 131 ~---~~~~~~k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~ 196 (203)
T cd00011 131 D---TAGTRGRLRSAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKV 196 (203)
T ss_pred c---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0 00011245566678889999999999999999999999999999999999999999999887654
No 134
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=97.99 E-value=0.0099 Score=52.54 Aligned_cols=199 Identities=17% Similarity=0.201 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG------YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~------~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
++++...+..|...+.+..+..+.++.+...|..++..++. ...+|+.+|.++++....+...+.. +...+..
T Consensus 5 ~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~-~~~~~~~ 83 (219)
T PF08397_consen 5 MEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEE-VFKAFHS 83 (219)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33444555556655666666666666666666666666652 2334888888888888888766555 5666666
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHH
Q psy18202 209 HNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRL 288 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki 288 (357)
.|..||...+..-... +-........++......|.|...+..++.....+ | +... .
T Consensus 84 ~li~pLe~~~e~d~k~--i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~k--------------g----k~~~---~ 140 (219)
T PF08397_consen 84 ELIQPLEKKLEEDKKY--ITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRK--------------G----KDDQ---K 140 (219)
T ss_dssp HTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--------------C----TSCH---H
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--------------C----Cccc---c
Confidence 7777777554433332 22233335668888888999888888888766211 0 1111 1
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy18202 289 EKLSTAIPKLTSQLEICDEKLQT-ANNHLRSDLERWR--LEKKNDLKKILLKIADQQIAYYQQRSDRGNCNC 357 (357)
Q Consensus 289 ~~l~~~i~~le~~~~~~~~~~~~-i~~~~~~El~rF~--~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~~ 357 (357)
..+...+..++.....++.-... ..+.+.+|=.||- -++.--+-.....|-..-+...+..++-|..-|
T Consensus 141 ~~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~~~~ 212 (219)
T PF08397_consen 141 YELKEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQELC 212 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 22222233343333333332222 3344557777775 233333333333333333445666777786443
No 135
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.96 E-value=0.0013 Score=58.69 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=81.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18202 177 EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLT 256 (357)
Q Consensus 177 E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~ 256 (357)
+..++.+|..+|.+..+++..-.. +-..+...|.++|+.++. ..++++-+.|.++. ...=.++-+|..+.+..
T Consensus 102 ~s~lg~aL~~~g~a~~kIa~ar~~-~D~~I~~~Fl~pL~~~L~--~d~k~i~k~RKkle----~~RLd~D~~K~~~~ka~ 174 (242)
T cd07600 102 EDPLSKALGKYSDAEEKIAEARLE-QDQLIQKEFNAKLRETLN--TSFQKAHKARKKVE----DKRLQLDTARAELKSAE 174 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcc
Confidence 344999999999999999986443 333444678888887755 23344444443321 11122233333222211
Q ss_pred ccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 257 NKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILL 336 (357)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~ 336 (357)
.. ++- +++..+++.++++|...++....-|..+-. ..+.-+.|.
T Consensus 175 ~~---------------------------~k~-------~~~~~e~E~aEdef~~a~E~a~~~M~~il~--~~e~i~~L~ 218 (242)
T cd07600 175 PA---------------------------EKQ-------EAARVEVETAEDEFVSATEEAVELMKEVLD--NPEPLQLLK 218 (242)
T ss_pred cc---------------------------ccc-------cchHHHHHHHHHHHHHhHHHHHHHHHHHHh--hhHHHHHHH
Confidence 10 111 123344556666776666666666666633 377899999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy18202 337 KIADQQIAYYQQRSDRG 353 (357)
Q Consensus 337 ~~a~~qi~~~~~~~~~W 353 (357)
.|+..|+.||+++.++-
T Consensus 219 ~fv~AQl~Yh~~~~e~L 235 (242)
T cd07600 219 ELVKAQLAYHKTAAELL 235 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 136
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=97.94 E-value=0.0094 Score=52.55 Aligned_cols=191 Identities=11% Similarity=0.112 Sum_probs=109.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHH-------------HHHHHHHHHHHHHHhhC---CchhH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLY----KERKD-------------YVSEAHQFAIVLNTWAG---YEPQL 180 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~----k~~~~-------------l~~~~~~~~~~~~~l~~---~E~~l 180 (357)
..+.|+.|.++...++.....+..+.+.+.... ..|.. .-.....+|.++..-|. .+..+
T Consensus 12 ~Te~d~df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~~~~Lg~~M~~~g~~~g~~S~~ 91 (229)
T cd07616 12 KTELDAHLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNNPELLGQYMIDAGNEFGPGTAY 91 (229)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCcH
Confidence 345577777776666655555444433322211 11111 11123345555444332 12349
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy18202 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDS 260 (357)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~ 260 (357)
+.+|..+|++..+++.+... +.......|..||+..+.- .++++-+.|.++. ...=.++.++..+.+-...
T Consensus 92 G~aL~~~g~a~~kia~~~~~-~i~~~~~~Fl~PL~~~le~--dik~i~k~RKkLe----~rRLdyD~~K~r~~kAk~~-- 162 (229)
T cd07616 92 GNALIKCGETQKQIGTADRE-LIQTSAINFLTPLRNFIEG--DYKTITKERKLLQ----NKRLDLDAAKTRLKKAKVA-- 162 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCcc--
Confidence 99999999999999988655 6555566899999987643 5566665554422 2222333333332221100
Q ss_pred CCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 261 DSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
+.-. ..+.+++.++++|+.-++.+..=+..+. ....+...-|.+|++
T Consensus 163 -------------------------~~~~-------~~e~elr~ae~efees~E~a~~~m~~i~-~~~~e~~~~L~~lv~ 209 (229)
T cd07616 163 -------------------------EARA-------AAEQELRITQSEFDRQAEITRLLLEGIS-STHAHHLRCLNDFVE 209 (229)
T ss_pred -------------------------hhhc-------chHHHHHHHHHHHHHHHHHHHHHHHhhh-hcChHHHHHHHHHHH
Confidence 0000 1244555666677666666655444554 346788899999999
Q ss_pred HHHHHHHHHHhcc
Q psy18202 341 QQIAYYQQRSDRG 353 (357)
Q Consensus 341 ~qi~~~~~~~~~W 353 (357)
.|++||+++.++-
T Consensus 210 AQl~Yh~~~~e~L 222 (229)
T cd07616 210 AQMTYYAQCYQYM 222 (229)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 137
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=97.92 E-value=0.011 Score=50.90 Aligned_cols=191 Identities=15% Similarity=0.195 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC-----chhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy18202 131 FSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY-----EPQLSSVIRQVSKAVDTTASLHKNLLIEP 205 (357)
Q Consensus 131 ~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~-----E~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 205 (357)
..+-++.++..|.++.+....|+.+-+.....-..|...+..||.. ++.++.+|.+++..+..+...+.. +.++
T Consensus 7 ~ee~l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd~~i~~a~~kfs~~~~El~~~~k~-L~~~ 85 (215)
T cd07641 7 LEEALDQDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDNPDLGTAFVKFSTLTKELSTLLKN-LLQG 85 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4455677778888888888888888888887778888888887643 455999999999999999988776 6666
Q ss_pred hhhhcchhHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 206 FHEHNSHPMKDYL-MYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 206 ~~~~l~~~l~~~~-~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
....+.-+|..++ +.+..+| ++=+.=++++-+|+.+.....+.+.+..|-. |.
T Consensus 86 ~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~-------------------e~------ 140 (215)
T cd07641 86 LSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQH-------------------GM------ 140 (215)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcc-------------------cc------
Confidence 6666666766553 4556666 6666666777777665443333222111100 00
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
...+..=.+..+..+....-|....=.-.--+.-.+..|..|+-..|.+|...|..|+++..+.
T Consensus 141 -----~r~e~~~~Eaa~~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~ 204 (215)
T cd07641 141 -----IRTEITGAEIAEEMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKT 204 (215)
T ss_pred -----hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000012222222222222222111123334566788999999999999999999998765
No 138
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=97.88 E-value=0.014 Score=50.58 Aligned_cols=179 Identities=13% Similarity=0.188 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-----CC--ch--hHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy18202 136 SNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-----GY--EP--QLSSVIRQVSKAVDTTASLHKNLLIEPF 206 (357)
Q Consensus 136 ~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-----~~--E~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 206 (357)
+.-...|+++.+....++...++++.+...|+.++..++ .. ++ .++.++..++..+..+.+.... +.++.
T Consensus 12 ~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~-L~~~~ 90 (207)
T cd07634 12 ERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRR-LIQNA 90 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 333344445555555555555555555566666666554 11 22 2889999999999999887655 66666
Q ss_pred hhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccH
Q psy18202 207 HEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSE 285 (357)
Q Consensus 207 ~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 285 (357)
...+..||..+. ..+..+|+.-++=++...+|.. .+.| --.+... +.
T Consensus 91 ~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~---aleK----~l~l~~~---kk---------------------- 138 (207)
T cd07634 91 NDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYS---ILEK----HLNLSAK---KK---------------------- 138 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHH---HHHH----HHhcccc---CC----------------------
Confidence 667777776554 3455666665555555555433 2211 1111111 10
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..++.+++.++......|....=...--|...+..|.-++-+.|..|...+..|+++..++-
T Consensus 139 ------~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~ 200 (207)
T cd07634 139 ------ESHLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELA 200 (207)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 12455666777777777777777777778888889999999999999999999999887653
No 139
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=97.73 E-value=0.026 Score=49.32 Aligned_cols=182 Identities=15% Similarity=0.187 Sum_probs=101.5
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHH----------H---HHHHHHHHHHHHHhhC---CchhH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLY----KERKD----------Y---VSEAHQFAIVLNTWAG---YEPQL 180 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~----k~~~~----------l---~~~~~~~~~~~~~l~~---~E~~l 180 (357)
..+.|+.|.++...++.....+.++.+.+.... ..|.. . -.....+|.++..-|. ....+
T Consensus 12 ~Teld~df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g~~s~~ 91 (220)
T cd07617 12 KTELDAHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFGPGTPY 91 (220)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCch
Confidence 345567777776666655555444433222211 01100 0 1123345555444332 12349
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy18202 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDS 260 (357)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~ 260 (357)
+.+|..+|.+..+++.+... +.......|.+||+.++. ..+|++.+.|.+ |+.+|-..+...+
T Consensus 92 G~aL~~~g~a~~~ia~~~~~-~~~~v~~~fl~pL~~~l~--~dlk~i~k~RKk-----------Le~rRLd~D~~K~--- 154 (220)
T cd07617 92 GKTLIKVGETQKRLGAAERD-FIHTSSINFLTPLRNFLE--GDWKTISKERRL-----------LQNRRLDLDACKA--- 154 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-----------HHHHHHHHHHHHH---
Confidence 99999999999999988555 545556688888887654 233444444433 2222222221111
Q ss_pred CCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 261 DSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
|+.+ .+.+++.++.+|+.-++....=+..+... ..+-...|.+|++
T Consensus 155 --------------------------r~~k-------ae~elr~A~~kf~~~~E~a~~~M~~il~~-~~e~l~~L~~lv~ 200 (220)
T cd07617 155 --------------------------RLKK-------AEHELRVAQTEFDRQAEVTRLLLEGISST-HVNHLRCLHEFVE 200 (220)
T ss_pred --------------------------HHhc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 1111 12356666677766666555555555433 4566778999999
Q ss_pred HHHHHHHHHHhcc
Q psy18202 341 QQIAYYQQRSDRG 353 (357)
Q Consensus 341 ~qi~~~~~~~~~W 353 (357)
.|++||+++.++-
T Consensus 201 AQl~Yh~q~~e~L 213 (220)
T cd07617 201 AQATYYAQCYRHM 213 (220)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 140
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=97.61 E-value=0.042 Score=48.42 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q psy18202 138 LYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY------EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNS 211 (357)
Q Consensus 138 l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~------E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (357)
..+.+.++...+....+..+.++.....|..+|..++.. -.+|+.+|.++++.+..+..-++. ....+...|.
T Consensus 18 ~~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~-~~~~~~~~li 96 (223)
T cd07605 18 FNPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASLEQ-VAKAFHGELI 96 (223)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 334444444444444444455555555555555555432 123777777777777666554443 3333344455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHH
Q psy18202 212 HPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKL 291 (357)
Q Consensus 212 ~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l 291 (357)
.||..-+.. ..|.+-........+|.....+|+|...++.++...+.++++ ...+.+..+.
T Consensus 97 ~pLe~k~e~--d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~-----------------~k~~~~l~~~ 157 (223)
T cd07605 97 LPLEKKLEL--DQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGT-----------------GKYQEKLDQA 157 (223)
T ss_pred HHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-----------------CcccHHHHHH
Confidence 555433221 122222333445667888888999988888887766322110 1112333333
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcccccC
Q psy18202 292 STAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIA-------YYQQRSDRGNCNC 357 (357)
Q Consensus 292 ~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~-------~~~~~~~~W~~~~ 357 (357)
-.++...+.+++..... ...+.+.+|-.||- -|-+.+-.++...+. ..+..+..|..-|
T Consensus 158 ~e~v~~k~~ele~~~~~--~lr~al~EERrRyc-----~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~~~~ 223 (223)
T cd07605 158 LEELNDKQKELEAFVSQ--GLRDALLEERRRYC-----FLVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQELC 223 (223)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcC
Confidence 33333333333322222 34455667777763 333444444444444 4556777787665
No 141
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=97.44 E-value=0.082 Score=47.60 Aligned_cols=141 Identities=14% Similarity=0.218 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHH
Q psy18202 141 KISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLM 219 (357)
Q Consensus 141 ~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (357)
.|..|.+.-+.++.....++.+....+..+..||..|.+ |+....++|..+..++++... |.+.+..|..
T Consensus 58 ~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~---------~a~~~d~yR~ 128 (271)
T PF13805_consen 58 KLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQ---------YADRLDQYRI 128 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 344444445555566666777777888999999988755 888888888877777766433 3333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHH
Q psy18202 220 YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLT 299 (357)
Q Consensus 220 ~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le 299 (357)
.+.+|++ ++..+..... .-.+-..+..+|.... |...|+..|+.++..+|
T Consensus 129 ~LK~IR~----~E~sl~p~R~---~r~~l~d~I~kLk~k~-----------------------P~s~kl~~LeqELvraE 178 (271)
T PF13805_consen 129 HLKSIRN----REESLQPSRD---RRRKLQDEIAKLKYKD-----------------------PQSPKLVVLEQELVRAE 178 (271)
T ss_dssp HHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHH------------------------TTTTTHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHhHHHH---HhHHHHHHHHHHHhcC-----------------------CCChHHHHHHHHHHHHH
Confidence 3333322 2221111111 1111222233343321 11257888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy18202 300 SQLEICDEKLQTANNHLRSDL 320 (357)
Q Consensus 300 ~~~~~~~~~~~~i~~~~~~El 320 (357)
.+.-.++..+..++....+|-
T Consensus 179 ae~lvaEAqL~n~kR~~lKEa 199 (271)
T PF13805_consen 179 AENLVAEAQLSNIKRQKLKEA 199 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHhhHHHHHHH
Confidence 888877777777776655443
No 142
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=97.37 E-value=0.079 Score=45.81 Aligned_cols=199 Identities=12% Similarity=0.152 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA------GYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~------~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
++++.+.+..|......-.++...+..+...+..++..+| ..-.+|+.+|-++++....+...++. ....+..
T Consensus 15 ~eqfnP~lrnLv~lGk~Y~KA~~a~~~A~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~-~lK~Fh~ 93 (226)
T cd07645 15 MEQFNPGLRNLINLGKNYEKAVNAMVLAGKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEE-NFKKFHR 93 (226)
T ss_pred HHhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3444444444444444444444444444334444444333 22344888888888888777765444 3333333
Q ss_pred hcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccH--
Q psy18202 209 HNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSE-- 285 (357)
Q Consensus 209 ~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 285 (357)
.+..+|..-.. ++.-+..++ ...+.++......|+|..+++.|+...++|. +.+..
T Consensus 94 Ell~~LE~k~elD~kyi~a~~---Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~------------------kn~~kye 152 (226)
T cd07645 94 EIIAELERKTDLDVKYMTATL---KRYQTEHKNKLDSLEKSQADLKKIRRKSQGR------------------RNASKYE 152 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC------------------CCchhhH
Confidence 44444443333 333333333 3467788888999999999999998874331 11111
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWR--LEKKNDLKKILLKIADQQIAYYQQRSDRGNCNC 357 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~--~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~~ 357 (357)
+|..+-...|...+.+++..-.+ ...+.+.+|-.||- -+|+=.+..-+..|-..-.+..+..+..|..-|
T Consensus 153 ~Ke~~~~e~~~~~q~el~~f~~~--~~k~AL~EErRRycFlvdkhC~~~~~~~~yh~k~~~lL~~klp~Wqe~c 224 (226)
T cd07645 153 HKENEYLETVTSRQSDIQKFIAD--GCREALLEEKRRFCFLVDKHCSFSNHIHYFHQQAAELLNSKLPVWQETC 224 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhh
Confidence 33333333333333333322222 23455668888864 455555555555666666666777888897655
No 143
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=97.34 E-value=0.083 Score=45.49 Aligned_cols=173 Identities=14% Similarity=0.227 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcch
Q psy18202 140 EKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-------GYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSH 212 (357)
Q Consensus 140 ~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-------~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (357)
...+.|.....||.....+|+.+...++..+-... ..+..+..+|.+++..++.+...... +.+.....+..
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~-L~dqaq~sl~~ 94 (215)
T cd07632 16 DYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSE-LAKQLADTMVL 94 (215)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444555566777777777777777777665432 22333889999999999999887665 76666667777
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHH
Q psy18202 213 PMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKL 291 (357)
Q Consensus 213 ~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l 291 (357)
||.-+.. ++..+|+.-+.=++.-.+++. + +.|....+ +.|
T Consensus 95 pL~~F~KeDl~~vKe~KK~FdK~Se~~d~-------A---L~Knaqls-------------------------kkK---- 135 (215)
T cd07632 95 PIIQFREKDLTEVSTLKDLFGIASNEHDL-------S---MAKYSRLP-------------------------KKR---- 135 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------H---HHHHhhCC-------------------------cCC----
Confidence 7776543 455555544433332222222 1 22222110 000
Q ss_pred HhhHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 292 STAIPKLT--SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 292 ~~~i~~le--~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
+.++.+.+ .++......+..++=.----|.-.+..|.-+|-+.|..|...++.|+++..++
T Consensus 136 ~~E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL 198 (215)
T cd07632 136 ENEKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFKKGAEL 198 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 12444444444444333456677778888999999999999999999887665
No 144
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=97.28 E-value=0.13 Score=46.41 Aligned_cols=176 Identities=14% Similarity=0.150 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHHhhCC----chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHH-HHHHHHH
Q psy18202 156 RKDYVSEAHQFAIVLNTWAGY----EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDA-VKQVLAR 230 (357)
Q Consensus 156 ~~~l~~~~~~~~~~~~~l~~~----E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a-~k~~l~~ 230 (357)
..+++..+..++..+...... +..+..++..+-...+.++..+.. +++.+...+.++|..+...... .|.+...
T Consensus 35 E~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~-~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~ 113 (251)
T cd07653 35 EQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHEL-IAENLNSNVCKELKTLISELRQERKKHLSE 113 (251)
T ss_pred HHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554332211 122556666666666666665554 5555545556666555443322 2234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----------ccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHH
Q psy18202 231 RDVIQAEHDMCGEELQKKTAEKEQLT-----------NKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLT 299 (357)
Q Consensus 231 R~~~~~~~~~~~~~l~kk~~~~~kL~-----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le 299 (357)
-.+++.++......+.+.+....++- ....+ + ...+..+++++.++...+
T Consensus 114 ~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~--~-----------------~~s~~~~eK~~~k~~k~~ 174 (251)
T cd07653 114 GSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADAD--M-----------------NLTKADVEKAKANANLKT 174 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--h-----------------ccchhhHHHHHHHHHHHH
Confidence 44444445554444444444322111 11000 0 001234555555555554
Q ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 300 SQLEICDEKLQTANN---------------HLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 300 ~~~~~~~~~~~~i~~---------------~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.....++.+|...-. .+...++.+...|...|+++|..|+.........+..
T Consensus 175 ~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~~~~~~~~~~~ 241 (251)
T cd07653 175 QAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEIERKVIPIIAK 241 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444444444322221 2335677888899999999999999988877666544
No 145
>KOG2101|consensus
Probab=97.27 E-value=0.00048 Score=65.77 Aligned_cols=75 Identities=27% Similarity=0.439 Sum_probs=59.3
Q ss_pred CcceeecchhhHHHHHHHHHHhC-CCCCCCCCCCcc---ccchhhhcCCHHHHHHHHHHHHHHH--HHHHcCccccCChh
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETL-PSHIIPPLPEKH---SLLEHLNRYSKEFILCRMKLLDQFL--RRVTSHPVLSVNSH 79 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~-p~~~iPplP~K~---~~~~~~~~~~~~fie~R~~~L~~fL--~~i~~hp~L~~~~~ 79 (357)
..|.|+|||+||..||..|.+.| |...+| .|... ......++++..++..|+..++.|| +....+|.+.++..
T Consensus 152 ~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~fl~~~f~~~~~~~~~~~~ 230 (362)
T KOG2101|consen 152 STAVVSRRYSDFSRLHRRLKRQFNPALRFP-GPKFRNEIQKKKLLGNFDADVIPERSEALEEFLSLQFKDSKPSNVNCKK 230 (362)
T ss_pred cCceeeechhHHHHHHHHHHHhcCccccCC-CccchhHHHHHHhhccchhhhhhhhhhhHHHHHHhhhhhccccccchHH
Confidence 46999999999999999999999 776664 33333 1111237789999999999999999 88888888888776
Q ss_pred hh
Q psy18202 80 AI 81 (357)
Q Consensus 80 ~~ 81 (357)
+.
T Consensus 231 ~~ 232 (362)
T KOG2101|consen 231 VM 232 (362)
T ss_pred hh
Confidence 65
No 146
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=97.26 E-value=0.11 Score=45.30 Aligned_cols=201 Identities=17% Similarity=0.189 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY------EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~------E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
++++.+.+.++........++...+..+...|..+|..+|.. -.+|+.+|-++++....+..-++. +...+..
T Consensus 17 meqfnP~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~le~-~lk~Fh~ 95 (232)
T cd07646 17 MEQFNPSLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEE-MLKSFHN 95 (232)
T ss_pred HHccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 333444445554444444444444444445555555554421 234888888888888777654444 3333444
Q ss_pred hcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHH
Q psy18202 209 HNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDR 287 (357)
Q Consensus 209 ~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~k 287 (357)
.+..+|..-+. +..-+.. -..+.+.++....+.|+|.+.++.||...+.|... ...-.+|
T Consensus 96 eli~pLE~k~E~D~k~i~a---~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~k~----------------~~ky~~k 156 (232)
T cd07646 96 ELLTQLEQKVELDSRYLTA---ALKKYQTEHRSKGESLEKCQAELKKLRKKSQGSKN----------------PQKYSDK 156 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC----------------chhhHHH
Confidence 44555543333 2222222 33456677888888888888888888866332100 0000133
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWR--LEKKNDLKKILLKIADQQIAYYQQRSDRGNCNC 357 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~--~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~~ 357 (357)
.-+.-..+...+.+++....+ .....+.+|-.||- -+|.=.+..-+..|-..-.+..+..+..|..-|
T Consensus 157 e~q~~~~~~~~q~ele~f~~~--~~k~Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~kl~~Wqe~c 226 (232)
T cd07646 157 ELQYIEAISNKQGELENYVSD--GYKTALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQKLPSWQQAC 226 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHh
Confidence 322322222222233322222 23345668888764 344444555555555555566677788897665
No 147
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.25 E-value=0.1 Score=44.83 Aligned_cols=184 Identities=11% Similarity=0.122 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-----Cc----hhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 131 FSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-----YE----PQLSSVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 131 ~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-----~E----~~l~~~l~~~~~~~~~~~~~~~~~ 201 (357)
...-++.++..|+++.+....++.+.+.++.+...|+..+..+.- .+ ..++.+|..+++.+..+-+....
T Consensus 7 hE~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~- 85 (207)
T cd07633 7 YEQELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMM- 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344567777777777777778888888888888888888877742 12 22789999999998888776554
Q ss_pred hhhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 202 LIEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+.+.....+..+|..+.. .+..+|+.-+.=++.--.|. +.+++-...++.+.
T Consensus 86 l~d~aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~----------~aL~k~a~~s~k~K----------------- 138 (207)
T cd07633 86 MVQNASDLLIKPLENFRKEQIGFTKERKKKFEKDSEKFY----------SLLDRHVNLSSKKK----------------- 138 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH----------HHHHHHhcccccCC-----------------
Confidence 655555566666665532 23333333322222111111 11222221111100
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..+++++...+...+.-|..++=.-.-.|.-.+..|.-++-+.|..|...+.-||.+..++-
T Consensus 139 -----------~~e~eEA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~ 200 (207)
T cd07633 139 -----------ESQLQEADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELT 200 (207)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 12445555556666665555554444567778888899999999999999999998877653
No 148
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.22 E-value=0.14 Score=45.60 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=85.9
Q ss_pred CCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 175 GYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMY-IDAVKQVLARRDVIQAEHDMCGEELQKKTAEK 252 (357)
Q Consensus 175 ~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~ 252 (357)
..|.+ |..++..+-...+.++..+.. ++..+...+..+|..|... ....+.+=..=..++..+......+.+.+...
T Consensus 52 ~~e~Gtl~~sw~~~~~e~E~~a~~H~~-la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y 130 (233)
T cd07649 52 AQEEGTLGEAWAQVKKSLADEAEVHLK-FSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKAL 130 (233)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554 788888888888888888776 6666666666777766553 22222222222222223322222222222211
Q ss_pred -------HH----hhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHH-------H
Q psy18202 253 -------EQ----LTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTAN-------N 314 (357)
Q Consensus 253 -------~k----L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~-------~ 314 (357)
+. +... + ....++.+.+++.+....++++..+.+.++.+. .
T Consensus 131 ~~~cke~e~~~~~~~~~---k------------------~~~s~~~~~K~~~K~~Ka~~e~~~~ve~y~~~r~~we~~m~ 189 (233)
T cd07649 131 LERQKDLEGKTQQLEIK---L------------------SNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMV 189 (233)
T ss_pred HHHHHHHHHHHHHHHhh---c------------------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0011 0 011245566666666666666665555554433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 315 HLRSDLERWRLEKKNDLKKILLKIADQQIAYYQ 347 (357)
Q Consensus 315 ~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~ 347 (357)
.+-..++.+...|..-|+++|.+|+..-.+.+-
T Consensus 190 ~~~~~~Q~~Ee~Rl~~lk~~L~~y~~~~~~~~~ 222 (233)
T cd07649 190 TTSLELERLEVERIEMIRQHLCQYTQLRHETDM 222 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 345788899999999999999999988776543
No 149
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=97.05 E-value=0.17 Score=43.46 Aligned_cols=196 Identities=11% Similarity=0.084 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy18202 133 QYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEP--QLSSVIRQVSKAVDTTASLHKNLLIEPFHEHN 210 (357)
Q Consensus 133 ~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (357)
+-++........+.+.+.++..+..+|......||.+|..+|.-|+ .++..+..+|+....+...-.. +...+ ..|
T Consensus 9 e~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~-ll~ai-~~~ 86 (215)
T cd07659 9 EELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQPAASEAFTKFGEAHRSIEKFGIE-LLKTL-KPM 86 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHhHHHHHHHHHhHHH-HHHHh-HHH
Confidence 3344555566778888888999999999999999999999999876 4999998888876666543222 22222 123
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHH
Q psy18202 211 SHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEK 290 (357)
Q Consensus 211 ~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~ 290 (357)
...|.-|+. .++-+++- -+..|+.+.-+...-+.+++.+.... .+. + . -+...-+|+.
T Consensus 87 ~s~l~T~l~--KaipDT~l----TikkY~~ar~EY~ayc~kvkEmd~ee--~~~-----------~-~--~~e~l~rvet 144 (215)
T cd07659 87 LSDLGTYLN--KAIPDTKL----TIKKYADVKFEYLSYCLKVKEMDDEE--YSY-----------A-A--LDEPLYRVET 144 (215)
T ss_pred HHHHHHHHH--hhCchHHH----HHHHHHHHHHHHHHHHHHHHHhcccc--ccc-----------c-c--ccCcHHHHHh
Confidence 333333322 22333322 22234555545555555555554321 000 0 0 0011256665
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 291 LSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 291 l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
-+-+..-.=+..+.+.++++.+...+..=++--+..+.++|..-|.-|...-..|+..+.+.
T Consensus 145 gnyeyrl~lRcrq~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~ 206 (215)
T cd07659 145 GNYEYRLILRCRQEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHEL 206 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556688889999999999999999999999999999999999999998887665
No 150
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=97.03 E-value=0.24 Score=44.87 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=37.8
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNH--------------LRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~--------------~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
++.+++++.++...+..+..+..+|...-.. +...++.++..|..-|+.+|..|+.+
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~ 237 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888877777777777776555333 23455666666666666666666654
No 151
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=97.00 E-value=0.2 Score=43.44 Aligned_cols=172 Identities=16% Similarity=0.284 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhH
Q psy18202 142 ISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-------GYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPM 214 (357)
Q Consensus 142 l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-------~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 214 (357)
.+.+.....||.....+|+.+-..|+..+...- ..+.-+..+|.+++..+..+...... +.+.....+..+|
T Consensus 18 ~~~~~~~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~-L~~q~~~sl~~pL 96 (215)
T cd07631 18 FNQLFQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAV-LSTQLADAMMFPI 96 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344555566777777777777777777776643 11122889999999999999887665 6666666677777
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHh
Q psy18202 215 KDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLST 293 (357)
Q Consensus 215 ~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~ 293 (357)
.-+.. .+..+|++=+. ++.+.+.+......--.|... + ..+.+.
T Consensus 97 ~~F~kedL~~~Ke~KK~-------FdK~Se~~d~Al~K~a~lsk~---K---------------------~~E~~~---- 141 (215)
T cd07631 97 TQFKERDLKEILTLKEV-------FQIASNDHDAAINRYSRLSKR---R---------------------ENEKVK---- 141 (215)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHhcCCCC---C---------------------CchHHH----
Confidence 65532 33444443332 233333333333222222211 1 011111
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 294 AIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 294 ~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
++....+......+..+.-...--|...+..|.-+|.+.|..|.+.++.|+++..+
T Consensus 142 --eea~~~v~~tR~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e 197 (215)
T cd07631 142 --YEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSE 197 (215)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 12333344455555555555556778888889999999999999999999998777
No 152
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=96.96 E-value=0.2 Score=42.80 Aligned_cols=180 Identities=13% Similarity=0.172 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhH
Q psy18202 140 EKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-----YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPM 214 (357)
Q Consensus 140 ~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-----~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 214 (357)
..|.++.+.++.|..+-......-..+..++..||. .+++++.++-+++.....++.++.. +..++..-+.-|+
T Consensus 16 ~~L~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~-L~qn~nniv~fpl 94 (213)
T cd07640 16 ASLQRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKN-LVQNLNNIVSFPL 94 (213)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhccch
Confidence 445666666666665555555555556666666553 3456999999999999999888877 6666665566666
Q ss_pred HHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHH
Q psy18202 215 KDYL-MYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLS 292 (357)
Q Consensus 215 ~~~~-~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~ 292 (357)
..++ +.+..+| ++-+.=++++-+|+.+.....+.+..+.+ -.|.. .
T Consensus 95 dsflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~-------------------~~g~~-------------~ 142 (213)
T cd07640 95 DSLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQK-------------------QHGLI-------------R 142 (213)
T ss_pred HHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccch-------------------hcccc-------------c
Confidence 6543 4555555 55555555555555533222221111100 01111 0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 293 TAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 293 ~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
.++++..+..+....-|....=.-.--+.--+..+..|+-..|.+|-..|..|+++..+.
T Consensus 143 ~e~eEaae~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~ 202 (213)
T cd07640 143 LDMTDTAEDMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKA 202 (213)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333333333332221111122333345677899999999999999999987665
No 153
>KOG1118|consensus
Probab=96.89 E-value=0.14 Score=46.36 Aligned_cols=95 Identities=8% Similarity=0.158 Sum_probs=53.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhH-----HHHHHHHHHHHHHHHhhCC---
Q psy18202 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLY-----------------KERK-----DYVSEAHQFAIVLNTWAGY--- 176 (357)
Q Consensus 122 ~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~-----------------k~~~-----~l~~~~~~~~~~~~~l~~~--- 176 (357)
...|..|.+++..++--...+.++...+..-. |.+- .+...-..+|.++...|..
T Consensus 22 TkLdDdF~eme~~vdvt~~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~k~~~ypq~e~~Lg~~mik~gkeLg~ 101 (366)
T KOG1118|consen 22 TKLDDDFLEMEKEVDVTSKGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQVKEKGYPQTEGLLGDVMIKHGKELGD 101 (366)
T ss_pred CcCChHHHHHHHhHHHHHHHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccccCCCCccchhHHHHHHHHHHHhcCC
Confidence 34556677776666666665555543332222 1110 1112222355555555432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHH
Q psy18202 177 EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDY 217 (357)
Q Consensus 177 E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 217 (357)
+.+.+..+..+|+.+..++..... +.......|.++|..+
T Consensus 102 dSs~g~tl~~~Gesm~~i~evk~s-l~~~vkq~FldpL~~l 141 (366)
T KOG1118|consen 102 DSSFGHTLIDAGESMREIGEVKDS-LDDNVKQNFLDPLQNL 141 (366)
T ss_pred CccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHh
Confidence 222677788888888888877554 6656666888888766
No 154
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=96.80 E-value=0.36 Score=43.25 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYI 221 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 221 (357)
.+++..+..++..+...+..+++ +..++..+....+.++..+.. +++.+...+..+|..|....
T Consensus 36 ~~YAK~L~kLa~k~~k~~~~~~Gtl~~aw~~~~~e~e~~a~~H~~-la~~L~~ev~~~l~~~~~~~ 100 (239)
T cd07658 36 LNYAKGLSKLSGKLSKASKSVSGTLSSAWTCVAEEMESEADIHRN-LGSALTEEAIKPLRQVLDEQ 100 (239)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34555556666554333333334 888999999999999888877 77777667778888776654
No 155
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=96.78 E-value=0.0048 Score=47.12 Aligned_cols=57 Identities=32% Similarity=0.544 Sum_probs=42.4
Q ss_pred CCCcceeecchhhHHHHHHHHHHh-----CCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVET-----LPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTS 70 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~-----~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~ 70 (357)
++..|.|.|+|.||..|.+.|... |.+ +|+||++... +-.++.+ ..+|..||.|+..
T Consensus 37 qgrsw~VkRSyEdfr~LD~~LHrCvyDRrfS~--L~eLp~~~~l-----~~~~~~v---~~~l~~YL~RlS~ 98 (115)
T cd07298 37 QGRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQ--LPELPRSDSL-----KDSPESV---TQMLMAYLSRLSA 98 (115)
T ss_pred CCCceEEEeeHHHHHHHHHHHHHHHHhhhhhc--cccCCCcccc-----cccHHHH---HHHHHHHHHHHHH
Confidence 467899999999999998888764 555 8899987653 1134555 4578888888764
No 156
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=96.51 E-value=0.27 Score=44.95 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 178 PQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 178 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
..|+.+|..++.+..++++.--. +-..+...|..+|...+. ..+..+-+.|.++ +.+.-.++-.|..+...
T Consensus 148 ~~L~~aL~~~S~~~~~I~~aRL~-qD~~I~~~Fn~~l~~~Ln--~~~~~a~k~RkkV----~~sRL~~D~~R~~~k~~-- 218 (289)
T PF10455_consen 148 DPLSKALLKYSSAYEKIAQARLE-QDQLIQKEFNKKLQTTLN--TDFKKANKARKKV----ENSRLQFDAARANLKNK-- 218 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHhccc--
Confidence 34999999999999999876322 222233456655554432 2333333333322 12222222222222110
Q ss_pred cCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 258 KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
. ++++-+ ++..+++.++++|...++....+|+.+- ...+.-+.|..
T Consensus 219 ~-------------------------~pekee-------~~r~~lE~aEDeFv~aTeeAv~~Mk~vl--~~~e~l~~Lk~ 264 (289)
T PF10455_consen 219 A-------------------------KPEKEE-------QLRVELEQAEDEFVSATEEAVEVMKEVL--DNSEPLRLLKE 264 (289)
T ss_pred C-------------------------CcccCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHH
Confidence 0 011111 3445577788899999999999999885 34778899999
Q ss_pred HHHHHHHHHHHHHhccc
Q psy18202 338 IADQQIAYYQQRSDRGN 354 (357)
Q Consensus 338 ~a~~qi~~~~~~~~~W~ 354 (357)
|+..|..||+++++.-+
T Consensus 265 lv~AQl~Yhk~aae~L~ 281 (289)
T PF10455_consen 265 LVKAQLEYHKKAAEALS 281 (289)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987643
No 157
>KOG4773|consensus
Probab=96.43 E-value=0.0047 Score=56.56 Aligned_cols=79 Identities=24% Similarity=0.358 Sum_probs=66.7
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCC---------CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcc
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPS---------HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPV 73 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~ 73 (357)
+..++..|.|||-+|..++..|.+++++ |++|+||.+-.+ .|.++--+.|...|..|+.-+++-|+
T Consensus 48 ~~~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~f-----dfkqe~Ae~r~~~ln~y~e~LlslPi 122 (386)
T KOG4773|consen 48 YGGSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYF-----DFKQEIAEERIPALNAYCEWLLSLPI 122 (386)
T ss_pred hccccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEe-----chhhhhhhhhhHHHHHHHHHHHhcch
Confidence 4567889999999999999999999983 789999999876 25678888999999999999999998
Q ss_pred ccC-Chhhhccccc
Q psy18202 74 LSV-NSHAIIFLTA 86 (357)
Q Consensus 74 L~~-~~~~~~FL~~ 86 (357)
-+- ++.|..|.-.
T Consensus 123 ~~l~~p~l~~fffv 136 (386)
T KOG4773|consen 123 GRLGGPGLRPFFFV 136 (386)
T ss_pred hhcCCCCceeeeee
Confidence 764 6777776543
No 158
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=96.33 E-value=0.72 Score=41.16 Aligned_cols=71 Identities=7% Similarity=0.142 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAE 251 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~ 251 (357)
+..++..+-...+.++..+.. ++..+...+.++|..+......-+ .+...=.+++..+......+++.+..
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~-~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~ 129 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLK-FAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREK 129 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776665 555555566666665544333222 22222233444455555555555554
No 159
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.19 E-value=0.94 Score=41.08 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=37.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAY 345 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~ 345 (357)
.|+++++.+....-........+|..=-..+...++.++..|..-|+..|..|+...-..
T Consensus 157 ~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~ 216 (261)
T cd07648 157 AKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSEN 216 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444433333334444444333334557889999999999999999999886543
No 160
>KOG3876|consensus
Probab=96.10 E-value=0.94 Score=40.24 Aligned_cols=129 Identities=11% Similarity=0.083 Sum_probs=79.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
-+..|++|+.--+.++........+.+.+..+..+...|......+|.+|..|+.-+++|..-+.--++...-++..
T Consensus 120 ~rTVD~ElEaQie~Lrd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~K~~elq~eft~nseTqr~l~kn--- 196 (341)
T KOG3876|consen 120 SRTVDLELEAQIEVLRDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQKSPELQEEFTYNSETQRLLGKN--- 196 (341)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHhCcCHHHHHHHhhh---
Confidence 46788888877666777777777777777788888888888888999999999887776665543333332222211
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAV-KQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~-k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
- ..+...|.+++.-+..+ ..++..--.-..+|+.|.-+.+.-|..++.+..+
T Consensus 197 -----g-etLl~alnfFIsSvnTl~nkTi~DTL~Ti~qyEsARiEyDayR~Dle~~~l~ 249 (341)
T KOG3876|consen 197 -----G-ETLLGALNFFISSVNTLVNKTIEDTLMTIKQYESARIEYDAYRTDLEELTLG 249 (341)
T ss_pred -----H-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHhcCC
Confidence 0 13344444443333221 1233333334456777777777777777766543
No 161
>KOG0521|consensus
Probab=95.64 E-value=1.2 Score=46.60 Aligned_cols=182 Identities=20% Similarity=0.291 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy18202 129 EQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG---YEPQLSSVIRQVSKAVDTTASLHKNLLIEP 205 (357)
Q Consensus 129 ~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~---~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 205 (357)
..+...+..++..+.++.+...++......+..+..+||..+..+.. .+..++..+.+|+.++..+...... +...
T Consensus 24 ~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~~~~~~~~~~~~~l~~fs~~~~e~~~~~~~-L~~q 102 (785)
T KOG0521|consen 24 DVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGKGLKDLFSLGQDEEVISETLQKFSKVLRELGTYHTE-LRSQ 102 (785)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 35667788888888888888888888889999999999988887732 2333788999999999988877665 5555
Q ss_pred hhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCcc
Q psy18202 206 FHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTS 284 (357)
Q Consensus 206 ~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 284 (357)
....+..++.-+. ..+.-+++. |. .++.+.++++-+.....++....
T Consensus 103 ~~~~~~~~l~~f~k~dl~~v~~~---kk----~f~ka~~~~d~a~~k~~~l~k~~------------------------- 150 (785)
T KOG0521|consen 103 LAHTLSLPLSQFVKGDLHEVKEL---KK----LFEKASEEYDLALVKYSRLPKKR------------------------- 150 (785)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhh---hH----HHHHHHhhHHHHHHHhhhhhhcc-------------------------
Confidence 5555666655432 333444444 22 23334444444444444433220
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQR 349 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~ 349 (357)
. .....++++.+......+....-...--+---+..|..++-+.+..|...|+.|+++.
T Consensus 151 -----~-~~~~~e~~~~l~~~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g 209 (785)
T KOG0521|consen 151 -----R-SKVKTEVEEELAAARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQG 209 (785)
T ss_pred -----c-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhccc
Confidence 0 0111223334444444444333332222333334456777777788888888777665
No 162
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.39 E-value=2 Score=38.93 Aligned_cols=57 Identities=16% Similarity=0.104 Sum_probs=37.5
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTAN-------NHLRSDLERWRLEKKNDLKKILLKIADQQ 342 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~-------~~~~~El~rF~~~k~~~l~~~l~~~a~~q 342 (357)
..++++..++...++.+..+..+++... ..+...++.++..|..-|+++|..|+...
T Consensus 150 k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~ 213 (261)
T cd07674 150 KELEKAELKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSV 213 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554544444444433 33457889999999999999999998663
No 163
>KOG3651|consensus
Probab=95.31 E-value=1.9 Score=39.28 Aligned_cols=193 Identities=10% Similarity=0.062 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy18202 133 QYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLHKNLLIEPFHEHN 210 (357)
Q Consensus 133 ~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (357)
+-++.-..-.+.+.....++-+...+++..+..||..|..++.-|++ -+++|..||+....+..--.. .+ ..+
T Consensus 139 eeLE~tae~Ykglveh~~~ml~a~y~lsqt~k~FGd~F~~i~vhEpQq~AsEAF~~Fgd~HR~ieK~g~~-~~----k~i 213 (429)
T KOG3651|consen 139 EELEETAEFYKGLVEHFGDMLQAQYKLSQTQKEFGDIFCDIAVHEPQQTASEAFSSFGDKHRMIEKKGSE-SA----KPI 213 (429)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHhccc-hh----hhh
Confidence 33444555667888888999999999999999999999999988876 788999999876665432111 11 112
Q ss_pred chhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHH
Q psy18202 211 SHPMKDYLMYIDAV----KQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSED 286 (357)
Q Consensus 211 ~~~l~~~~~~~~a~----k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (357)
-..+.+..-|+.-+ +-++++--.+..+|-... |. .++ .+ |... ++.-..-|- =
T Consensus 214 kpmlsDL~tYlnkaiPDTrLTikkYlDvKfeYLSYC--LK-vKE-MD-------DEE~-----------~f~AlqEPL-Y 270 (429)
T KOG3651|consen 214 KPMLSDLQTYLNKAIPDTRLTIKKYLDVKFEYLSYC--LK-VKE-MD-------DEEV-----------EFVALQEPL-Y 270 (429)
T ss_pred hHHHHHHHHHHhccCCcchhhhHHhhhhhHHHHHHH--Hh-hhh-cc-------chhh-----------ceeeecCce-e
Confidence 22222222222211 111111111111111100 00 000 00 0000 000000000 0
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
||+.=.=+..-.-+..+.+..+|..+...++.-++.....-..|+..-|..++.....+++.++++.
T Consensus 271 RVeTGNYEYRliLRCRQeaRarF~kmR~DVleKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L 337 (429)
T KOG3651|consen 271 RVETGNYEYRLILRCRQEARARFMKMRDDVLEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEIL 337 (429)
T ss_pred EeecCCeeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000111112234556778888888888888888888889999999999999999999988764
No 164
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=95.31 E-value=1.6 Score=37.31 Aligned_cols=186 Identities=10% Similarity=0.138 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q psy18202 133 QYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS-SVIRQVSKAVDTTASLHKNLLIEPFHEHNS 211 (357)
Q Consensus 133 ~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (357)
+.+.........+.++++.....-..|+..-..+|..|..+|.-++.+. ..+...++++-..++..- ..-
T Consensus 9 elfrsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~~~~d~t~ag~~m~~t~KaL~~sg~qrl---------~~r 79 (204)
T cd07661 9 ELFRSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQGKIDKTTAGKMMAATGKALSFSSQQRL---------ALR 79 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhccHHHHHHHHHHHhHHHHH---------HHH
Confidence 3444445555566666777777777788888889999988887776544 334444444444333211 122
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCCCCcccCCCcccccCCccHHHHH
Q psy18202 212 HPMKDYLMYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTN-KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLE 289 (357)
Q Consensus 212 ~~l~~~~~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~ 289 (357)
.||..+...+..+. .++..-..-...|+.+-.+....+........ .+++- ....+|
T Consensus 80 ~pl~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~eldP~~-------------------~~~l~k-- 138 (204)
T cd07661 80 VPLLRLYQEVETFRERAIADTLQTIQRMEKCRTEYRAALLWMKSVSQELDPDT-------------------YKQLEK-- 138 (204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcCCcc-------------------chhHHH--
Confidence 23333333332222 01111111111222322222222222222111 00000 000144
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 290 KLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 290 ~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
+..++.++...+++|+.....+..=++--...|..-|...|..|-..-+.|+++.....
T Consensus 139 -----fr~aQ~qvr~~K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~ 197 (204)
T cd07661 139 -----FRKAQAQVRSAKERFDKLKMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTM 197 (204)
T ss_pred -----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556668888899999999999999999999999999999999999999998876544
No 165
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=95.29 E-value=2 Score=38.13 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hhCCchhHHHHHHHHHHHHHHHH
Q psy18202 126 SEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNT--WAGYEPQLSSVIRQVSKAVDTTA 195 (357)
Q Consensus 126 ~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~--l~~~E~~l~~~l~~~~~~~~~~~ 195 (357)
.++..+...+..+...+..+.+....+.....+++..+..+|..=.. ++..-..++.++..++...+..+
T Consensus 31 ~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a 102 (236)
T PF09325_consen 31 DYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQA 102 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777777777777777765543322 22222234444444444444433
No 166
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.14 E-value=2 Score=37.36 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hhCCchhHHHHHHHHHHHHHHHHHH
Q psy18202 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNT----WAGYEPQLSSVIRQVSKAVDTTASL 197 (357)
Q Consensus 127 ~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~----l~~~E~~l~~~l~~~~~~~~~~~~~ 197 (357)
.+..+...+..+...+..+.+....+.....+++..+..+|..... |+..-..++..+..++......+..
T Consensus 12 ~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (218)
T cd07596 12 YILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQANQ 86 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777777777777777776543 4444444666666666666655543
No 167
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=95.11 E-value=0.061 Score=40.84 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=39.0
Q ss_pred CCCcceeecchhhHHHHHHHHHHh-CC--CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVET-LP--SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTS 70 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~-~p--~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~ 70 (357)
++.+|.|.|.|.||..|.+.|... |- ..-+++||+-... +. .+ +.-..+|..||.|+..
T Consensus 35 qgrsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l----~~-~~---~~~~~~l~~YL~RlS~ 96 (113)
T cd07299 35 QGRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEI----GD-RL---QILTPLLSEYLNRLTG 96 (113)
T ss_pred cCcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCccccc----cc-hH---HHHHHHHHHHHHHHHH
Confidence 457899999999999988888752 21 2345666665432 11 12 2335688899998864
No 168
>KOG0905|consensus
Probab=95.07 E-value=0.032 Score=58.86 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=62.1
Q ss_pred eeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCC-HHHHHHHHHHHHHHHHHHHcC-ccccCChhhhccccc
Q psy18202 9 IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYS-KEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIFLTA 86 (357)
Q Consensus 9 ~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~-~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~FL~~ 86 (357)
-+.|.|.+|..||..|...||..-+|.+|..-.. ++.. ...-++|.+.|++||..+.+- +.+..++.+..|.-+
T Consensus 1409 ~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~----grsnikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhp 1484 (1639)
T KOG0905|consen 1409 FIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHL----GRSNIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHP 1484 (1639)
T ss_pred HHHHhHHHHHHHHHHHHHhCccccCCCCCceeee----cccchhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeeech
Confidence 3679999999999999999999999999977665 4433 456789999999999999854 778888888888764
No 169
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.94 E-value=2.7 Score=37.91 Aligned_cols=65 Identities=6% Similarity=-0.011 Sum_probs=43.9
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTA---------------NNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQR 349 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i---------------~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~ 349 (357)
+..+++++.....-+...+.++.+|..- --.+...++.++..|...|+++|..|+...-......
T Consensus 162 k~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~~~~i 241 (253)
T cd07676 162 KADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVDRQVIPII 241 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3556666666666666666666553222 1223467788999999999999999998887765543
No 170
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.86 E-value=2.7 Score=37.37 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 301 QLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 301 ~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.++.+..+++.=-..+.+-++.-+.+|..-|+++|..|+...-.++.+.-+
T Consensus 147 ~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~~~~ 197 (228)
T cd07650 147 DLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTE 197 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhH
Confidence 344555556555555666777778889999999999999988887765433
No 171
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=94.85 E-value=2.9 Score=37.79 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=26.6
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERW 323 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF 323 (357)
++.+++++.+++.....++.++.+|......+...-.+|
T Consensus 167 ~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y 205 (258)
T cd07680 167 PEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQY 205 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 467777888888877777777777766665554444444
No 172
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=94.80 E-value=3 Score=37.69 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=34.5
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRS--------------DLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~--------------El~rF~~~k~~~l~~~l~~~a~ 340 (357)
++.+++++.+++..+.+++.+..+|+.....+.. -.+.|..+|..-|+++|.+|-.
T Consensus 167 ~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~~EeeRi~flK~~L~~~~~ 236 (258)
T cd07681 167 QEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQEAERKRLCFFKEMLLDLHQ 236 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777776665554433 3344445555555555555544
No 173
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=94.73 E-value=2.7 Score=36.86 Aligned_cols=128 Identities=13% Similarity=0.186 Sum_probs=67.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
++...|-+.++...-.+|+..+..+.-.. ..+.+.+..+|..-....+.-.+|+.+|.+++.....+-.-...
T Consensus 17 ~k~s~P~~~d~v~ka~K~~saL~a~~~A~-------~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~ 89 (231)
T cd07643 17 MKGSYPLWEDFVSKATKLHSQLRATIVAT-------SAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQ 89 (231)
T ss_pred hccCCccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777777765543332 22333333333332222222334777887777777665444443
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
++..+...|..||..-+.+-.-.-..|+ ...-.+|..+..+|.|+...--+|+..
T Consensus 90 -f~~~L~~~lI~pLe~k~E~wkk~~~~ld--Kd~~k~~kk~R~elKk~~~dt~klqkk 144 (231)
T cd07643 90 -FTSALMDCLVNPLQEKIEEWKKVANQLD--KDHAKEYKKARQEIKKKSSDTIRLQKK 144 (231)
T ss_pred -HHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4555555556666544333222222222 223345677777777777765566543
No 174
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=94.69 E-value=0.1 Score=39.77 Aligned_cols=59 Identities=25% Similarity=0.445 Sum_probs=39.4
Q ss_pred CCCcceeecchhhHHHHHHHHHHh-CC--CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVET-LP--SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTS 70 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~-~p--~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~ 70 (357)
++..|.|.|.|.||..|-+.|... |- -.-+++||+-... .. .+ +.-..+|..||.|+..
T Consensus 36 qg~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~----~~-~~---~~~~~~l~~YL~RlS~ 97 (114)
T cd07278 36 QGKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIE----KR-EQ---QNLHQVLSDYLKRLSS 97 (114)
T ss_pred CCcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccccc----cc-hH---HHHHHHHHHHHHHHHH
Confidence 457899999999999998888762 22 2346777775432 11 11 2335678888888764
No 175
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=94.40 E-value=3.6 Score=36.85 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERW--------------RLEKKNDLKKILLKIAD 340 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF--------------~~~k~~~l~~~l~~~a~ 340 (357)
+.+++++.+++.....++.+..+|......+..--++| ..+|..-|+.+|-.||.
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~~lw~~~n 222 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEFFEKQECERINFFRNAVWTHVN 222 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777766666666655544443333333 44455555555555543
No 176
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=94.38 E-value=3.7 Score=36.95 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=32.5
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDL--------------ERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El--------------~rF~~~k~~~l~~~l~~~a~ 340 (357)
++.+++++.+++..+.+++.+...++..-..+..-- +.|..+|..-|+.+|..+..
T Consensus 167 ~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~~~ 236 (258)
T cd07679 167 PEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQK 236 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777655544443322 33444455555555555443
No 177
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.20 E-value=4.3 Score=37.01 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=36.9
Q ss_pred HHHHHHHHhhHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICD-------EKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQ 342 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~-------~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~q 342 (357)
+.++++++.++....+..+.+- .+|+.--..+...++.++..|..-|+++|..|+..-
T Consensus 156 ~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~ 220 (269)
T cd07673 156 QREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSV 220 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444333 333333334557888899999999999999999843
No 178
>KOG3725|consensus
Probab=93.00 E-value=6.3 Score=35.07 Aligned_cols=137 Identities=18% Similarity=0.347 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQ---AEHDMCGEELQKKTAEKEQLT 256 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~---~~~~~~~~~l~kk~~~~~kL~ 256 (357)
.+.++-++++.-.+++..-.+ +.......|..||+.++. ..+|.+-+.|..++ .++..+...|.|+++.- +.
T Consensus 111 YG~aLiKvaetekrlG~AeRe-li~taa~nfLtPlRnFlE--GD~KTI~KERklLqnkRLDLDAcKsRLKKAKaae--~q 185 (375)
T KOG3725|consen 111 YGSALIKVAETEKRLGQAERE-LIGTAATNFLTPLRNFLE--GDMKTIQKERKLLQNKRLDLDACKSRLKKAKAAE--LQ 185 (375)
T ss_pred chHHHHHHHHHHHHhhHHHHH-HHHHHHHHhHHHHHHHhh--ccHHHHHHHHHHHhhcccChHHHHHHHHHhhhhh--hh
Confidence 567788888888888877655 444444578888887753 34444444454333 35666766776655532 22
Q ss_pred ccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy18202 257 NKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQT---ANNHLRSDLERWRLEKKNDLKK 333 (357)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~---i~~~~~~El~rF~~~k~~~l~~ 333 (357)
...+.+ .++|+ .|+..|+++..++.+|+. |+..+.+-|.-=| ... -+
T Consensus 186 ~~rN~~----------~s~~~----------------~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH---~nh-Lr 235 (375)
T KOG3725|consen 186 TVRNSK----------TSGGF----------------TIEQAEQELRVAQAEFDRQAEITRLLLEGISSTH---NNH-LR 235 (375)
T ss_pred cccccc----------ccCcc----------------hHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh---hhH-HH
Confidence 111011 11222 344455555555555554 4444555544433 223 34
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy18202 334 ILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 334 ~l~~~a~~qi~~~~~~~~ 351 (357)
.|.+|++.|..||-++..
T Consensus 236 CL~dFVeaQmtyYAQcyq 253 (375)
T KOG3725|consen 236 CLRDFVEAQMTYYAQCYQ 253 (375)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678899999888776543
No 179
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=92.84 E-value=6.6 Score=34.93 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHhhCCchh----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy18202 156 RKDYVSEAHQFAIVLNTWAGYEPQ----LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARR 231 (357)
Q Consensus 156 ~~~l~~~~~~~~~~~~~l~~~E~~----l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R 231 (357)
.++++..+..++..+..-+..+.+ +..++..+-.-.+.++..... .++++...+.+.|.-+......++..+..-
T Consensus 35 EkEYA~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~~-~aE~l~~~i~~~l~~l~~~~~~~~k~~~~~ 113 (234)
T cd07686 35 DKEYASTLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMKT-HAEELNSGPLHRLTMMIKDKQQVKKSYIGV 113 (234)
T ss_pred HHHHHHHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666554332222211 223444444444444444333 444454455555655555555544333222
Q ss_pred -HHHHHHHHH-HHHHHHHHHHH
Q psy18202 232 -DVIQAEHDM-CGEELQKKTAE 251 (357)
Q Consensus 232 -~~~~~~~~~-~~~~l~kk~~~ 251 (357)
.++..++.. ....+.|.+..
T Consensus 114 ~~kl~~e~~~~~~~~l~K~K~~ 135 (234)
T cd07686 114 HQQIEAEMYKVTKTELEKLKCS 135 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 333333332 33445555544
No 180
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.18 E-value=8.3 Score=34.45 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=31.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNH--------------LRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~--------------~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
..+++++.++...+..++.+..+|...... +...++.++..|..-|+..|-.||..
T Consensus 153 ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~ 222 (239)
T cd07647 153 KEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEERIKFLRNALWVHCNL 222 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456666666666665555555554333222 33455666666666666666666643
No 181
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.94 E-value=6.2 Score=32.48 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhh
Q psy18202 215 KDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTA 294 (357)
Q Consensus 215 ~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~ 294 (357)
......+..+-++|..|+.-+...+.+...+.+...+..+|... ++.|+.+
T Consensus 31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~-----------------------------~~rL~~~ 81 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQND-----------------------------VERLKEQ 81 (151)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------------------------HHHHHHH
Confidence 44566777788888888888888888888888888877776643 4455555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 295 IPKLTSQLEICDEKLQTANNHLRSDLERWR 324 (357)
Q Consensus 295 i~~le~~~~~~~~~~~~i~~~~~~El~rF~ 324 (357)
+++++.++..++.+.......+..+....+
T Consensus 82 ~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 82 LEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554444444444333333
No 182
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=91.62 E-value=16 Score=36.62 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=53.4
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhh-----h---cCCHHHHHHHHHHHHHHHHHHHcCccc
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL-----N---RYSKEFILCRMKLLDQFLRRVTSHPVL 74 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~-----~---~~~~~fie~R~~~L~~fL~~i~~hp~L 74 (357)
.....-+|.+||++|..+...+...+|.+..||+|.+.....+. . .-... +..|...++-++.++.++|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~-~~s~~~~~~y~i~~~~n~~~f 165 (524)
T COG5391 87 IAIHDSKIHSRASEFRSLRDMLSLLLPTSLQPPLSTSHTILDYFISSTVSNPQSLTLL-VDSRDKHTSYEIITVTNLPSF 165 (524)
T ss_pred ccCCccccccchhhhhhhhhhhhhcCchhcCCCCcccccchHhHhhhccccchhcccc-cccCCCcceeeEEEeecCccc
Confidence 34456689999999999999999999999999999998753211 0 00001 334455556666677777777
Q ss_pred cCChhh
Q psy18202 75 SVNSHA 80 (357)
Q Consensus 75 ~~~~~~ 80 (357)
......
T Consensus 166 ~~~~~~ 171 (524)
T COG5391 166 QLRESR 171 (524)
T ss_pred cccccc
Confidence 666553
No 183
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=91.11 E-value=11 Score=33.71 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q psy18202 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTN-- 257 (357)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~-- 257 (357)
+.++..+-...+.++..... .++.+...+.++|.-+......++ .......++..++.....+|++.+...+++-.
T Consensus 64 ~~sW~~iL~ete~~A~~~~~-~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~ 142 (237)
T cd07657 64 SKSWKEIMDSTDQLSKLIKQ-HAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDY 142 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333 455555566666665555555544 33344444455555555555555544322211
Q ss_pred ---------cCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH-------------
Q psy18202 258 ---------KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNH------------- 315 (357)
Q Consensus 258 ---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~------------- 315 (357)
...+. ......+++++.+..+...+...++.++-..-..
T Consensus 143 e~Ar~k~e~a~~~~-------------------~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~l 203 (237)
T cd07657 143 KAAKSKFEEAVVKG-------------------GRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLL 203 (237)
T ss_pred HHHHHHHHHHHhhc-------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 10000 0112456667777666666666666665443333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 316 --LRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 316 --~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
+...++.++..+...++++|..|++.
T Consensus 204 P~ll~~lQ~l~E~ri~~~k~~l~~~~~~ 231 (237)
T cd07657 204 PGLLNSLQSLQEEFITQWKKILQEYLRY 231 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666666653
No 184
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.90 E-value=17 Score=38.11 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 313 NNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 313 ~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
...+.+|++++... ...|+..+.+ +...+++.+..++
T Consensus 634 Er~~~~EL~~~~~~-l~~l~~si~~-lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 634 EREFKKELERMKDQ-LQDLKASIEQ-LKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHh
Confidence 34456777777764 5667766666 4555555444443
No 185
>KOG1451|consensus
Probab=90.69 E-value=20 Score=35.98 Aligned_cols=171 Identities=13% Similarity=0.185 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-----hCCchh----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy18202 139 YEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTW-----AGYEPQ----LSSVIRQVSKAVDTTASLHKNLLIEPFHEH 209 (357)
Q Consensus 139 ~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l-----~~~E~~----l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (357)
...++.+.+-...++...++++.+...|+..++.+ |..|++ ++..|+.+|..+..+-+.--. +..+..+.
T Consensus 33 nkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~-~v~~Ase~ 111 (812)
T KOG1451|consen 33 NKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMR-MVGNASES 111 (812)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHH
Confidence 34445556666677777777888888888877765 333433 788889999888777654322 33333346
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHH
Q psy18202 210 NSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLE 289 (357)
Q Consensus 210 l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~ 289 (357)
+.+||..+....-. +++.+.++.. ++-+|-=..+++-...++ .|
T Consensus 112 li~PlekFRkEqIG---~~KE~KkKyd------Ke~ekfy~~LekHLhLSs-------------------------kk-- 155 (812)
T KOG1451|consen 112 LIEPLEKFRKEQIG---TLKEEKKKYD------KESEKFYQTLEKHLHLSS-------------------------KK-- 155 (812)
T ss_pred HHhHHHHHHHHHhh---hhHHHHhhhh------hhhHHHHHHHHHHhcccc-------------------------ch--
Confidence 67777655322111 2222222111 001111111232222210 01
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 290 KLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348 (357)
Q Consensus 290 ~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~ 348 (357)
+.++.++..+++.-...|=..+-.-.-|++..+..+.-++-+-|..|...-..++.-
T Consensus 156 --esqlqeAD~Qvd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f~h~ 212 (812)
T KOG1451|consen 156 --ESQLQEADAQVDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSFFHV 212 (812)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Confidence 334445555555555555444444456788888888888888888888777666544
No 186
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=90.46 E-value=12 Score=33.23 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 318 SDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 318 ~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
..++.+...|..-|+..|..|+.
T Consensus 196 ~~~Q~lEe~Ri~~lk~~l~~~a~ 218 (236)
T cd07651 196 DDFQDLEEERIQFLKSNCWTFAN 218 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554
No 187
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.11 E-value=36 Score=38.07 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKI 334 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~ 334 (357)
+.++.++..+..++.....++.+|+.....+..+..++...+......+
T Consensus 359 ~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~ 407 (1201)
T PF12128_consen 359 NELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEI 407 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666555555555554443333
No 188
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=89.81 E-value=14 Score=33.04 Aligned_cols=56 Identities=9% Similarity=0.041 Sum_probs=32.4
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRS--------------DLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~--------------El~rF~~~k~~~l~~~l~~~a~ 340 (357)
+..+++++.++......++.+..+|...-+.+.. -++.+..+|..-|+.+|-.|+.
T Consensus 152 ~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K~~lw~~~n 221 (242)
T cd07671 152 PKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILRNALWVHCN 221 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777777777776555443333 3344444555555555555544
No 189
>KOG2273|consensus
Probab=88.88 E-value=27 Score=34.91 Aligned_cols=196 Identities=17% Similarity=0.182 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHH--HHH-HHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 132 SQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSS--VIR-QVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 132 ~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~--~l~-~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
...+.+....+..+......+.+....+......++..+..++..-..++. ... .++..+..+...... +.... .
T Consensus 273 ~~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~-~~~~~-e 350 (503)
T KOG2273|consen 273 DKEFTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIES-LSKLL-E 350 (503)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH-HHHHH-H
Confidence 455667777777777777776666666666666666666665443332221 111 333333333333222 21111 1
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHH
Q psy18202 209 HNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRL 288 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki 288 (357)
.+. ...++..+...+++.+...+.+...++...+.+.+.......+.... .. ...+. .+.
T Consensus 351 ~~~-~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~---e~-----------~~~~~-----~~~ 410 (503)
T KOG2273|consen 351 KLT-AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKK---EQ-----------LSKLK-----KKN 410 (503)
T ss_pred Hhh-hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HH-----------HHHHH-----Hhh
Confidence 111 66888889999999999988887777776665555544444443320 00 00000 000
Q ss_pred HH--HHhhHhHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 289 EK--LSTAIPKLTSQLEICDEKLQTANNHLR-SDLE--RWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 289 ~~--l~~~i~~le~~~~~~~~~~~~i~~~~~-~El~--rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
.. -..+++..+.++.....+.+.++..+. .++. .+...-..+ +..|-..+..-.+.++..|
T Consensus 411 ~~~~~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e----~~~f~~~~~~d~~~~~~~~ 476 (503)
T KOG2273|consen 411 RSSFGFDKIDLAEKEIEKLEEKVNELEELLALKELELDEISERIRAE----LERFEESRRQDFKESLKKY 476 (503)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 00 123335555555555566666665543 3333 554443333 6666666666555555555
No 190
>PRK11546 zraP zinc resistance protein; Provisional
Probab=88.03 E-value=6.2 Score=32.15 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHH
Q psy18202 236 AEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDE 307 (357)
Q Consensus 236 ~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~ 307 (357)
.+-..+.+.|-.|+.+++.|..+ ..|++.+|.+|..||.+|..++.....
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~----------------------~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTA----------------------NPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC----------------------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677788888888765 125678999999999988876664443
No 191
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=86.28 E-value=20 Score=30.46 Aligned_cols=66 Identities=12% Similarity=0.230 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTWAGYE-PQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDA 223 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l~~~E-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a 223 (357)
.+++..+..++..+..-.... ..+..++..+....+.++..+.. +++.+...+.+++..+......
T Consensus 31 ~eYak~L~kLak~~~~~~~~~~~t~~~~w~~~~~e~~~~a~~h~~-~a~~l~~~i~~~~~~~~~~~~~ 97 (191)
T cd07610 31 EEYAKNLQKLAKKFSKKPESGKTSLGTSWNSLREETESAATVHEE-LSEKLSQLIREPLEKVKEDKEQ 97 (191)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445544433211111 13677777777777777776555 5554544556666655554443
No 192
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=85.98 E-value=19 Score=29.99 Aligned_cols=69 Identities=6% Similarity=0.115 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-----CchhHHHHHHHHHHHHHHHHH
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-----YEPQLSSVIRQVSKAVDTTAS 196 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-----~E~~l~~~l~~~~~~~~~~~~ 196 (357)
|..++..++++....+.+......+......++..+.++|..+...+. .-..++..+..++........
T Consensus 2 ~~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~ 75 (194)
T cd07307 2 LDELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQ 75 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777776667777777777777777776655432 122255556666655555544
No 193
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=85.75 E-value=18 Score=29.49 Aligned_cols=97 Identities=6% Similarity=0.082 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 161 SEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240 (357)
Q Consensus 161 ~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~ 240 (357)
.++..+..++..|-..-.++..-+..|-+..+.+...++. ..+.....|...+..|......+.+.=.+-..+-..++.
T Consensus 19 ~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~-vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ 97 (142)
T PF04048_consen 19 DDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQE-VVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQE 97 (142)
T ss_pred CCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665544434556667777777777776666 433344588899999999999888887777777777888
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy18202 241 CGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 241 ~~~~l~kk~~~~~kL~~~ 258 (357)
+...|..++.++.+|-..
T Consensus 98 ak~~L~~~~~eL~~L~~~ 115 (142)
T PF04048_consen 98 AKSLLGCRREELKELWQR 115 (142)
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 888887777777776543
No 194
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.71 E-value=24 Score=30.93 Aligned_cols=115 Identities=8% Similarity=0.054 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 126 SEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNT-WAGYEPQLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 126 ~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~-l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
..+..+..++.++...+..+.+...++.....+++.++..+|.+=+. |+..-.+++..+..+++..+.-.......+.
T Consensus 11 ~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~- 89 (211)
T cd07598 11 ERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQDYRQAEVERLEAKVV- 89 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 46677888888888888888888888888888888777777765422 2223334666666666655555443222122
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 205 PFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEE 244 (357)
Q Consensus 205 ~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~ 244 (357)
..|.+....+...-..+|.....|++.....+...+.
T Consensus 90 ---epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~~lekl 126 (211)
T cd07598 90 ---QPLALYGTICKHARDDLKNTFTARNKELKQLKQLEKL 126 (211)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666666677888887777765444443
No 195
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=85.47 E-value=28 Score=31.49 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=28.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 293 TAIPKLTSQLEICDEKLQTANNHL---RSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 293 ~~i~~le~~~~~~~~~~~~i~~~~---~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
.+++.++..+..+....+...+.- ...+..++.....+|..++..+-+.+.+.-.-.-++
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~ 230 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEI 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544443332 234445554555555555555555444443333333
No 196
>KOG4460|consensus
Probab=81.73 E-value=59 Score=32.44 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=29.3
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRL------EKKNDLKKILLKIADQQIAYYQQRS 350 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~------~k~~~l~~~l~~~a~~qi~~~~~~~ 350 (357)
++..++.....++++++.+..+-+....++.+=+.+|+. .-+.||+.-+ .|+-.+.+..+..+
T Consensus 610 er~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~El-q~~~~~~~~L~~~i 678 (741)
T KOG4460|consen 610 ERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKEL-QLIPDQLRHLGNAI 678 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 333333333444444444444444444444444444432 2345666666 56655555544443
No 197
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=81.71 E-value=35 Score=29.85 Aligned_cols=67 Identities=7% Similarity=0.253 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhhCCchhHHHHHHHHHHHHHH
Q psy18202 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVL--NTWAGYEPQLSSVIRQVSKAVDT 193 (357)
Q Consensus 127 ~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~--~~l~~~E~~l~~~l~~~~~~~~~ 193 (357)
.+......+..+...+..+.+.-..+.....+++.++..+|..= ..++..-..++....+++.....
T Consensus 12 ~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 12 YLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777766677777777776666666543 22332223344444444444443
No 198
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=80.87 E-value=43 Score=30.22 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCCcccCCCcccccCCccH-HHHHHHHhhHhHHHHHHHHHH
Q psy18202 229 ARRDVIQAEHDMCGEELQKKTAEKE-QLTNKDSDSSSPTSSTATSSTNSYSLWKSTSE-DRLEKLSTAIPKLTSQLEICD 306 (357)
Q Consensus 229 ~~R~~~~~~~~~~~~~l~kk~~~~~-kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~ki~~l~~~i~~le~~~~~~~ 306 (357)
.+|..+-..|+...+.|++++.... +|.-. + ..+ +=++++..-..+++++.+-.+
T Consensus 120 Er~~~iTt~~qq~ee~Le~k~~~is~qL~~~-~----------------------~~r~EL~~~~~~l~~QL~Eeee~y~ 176 (385)
T PF15642_consen 120 ERRKKITTSHQQHEEALEKKKEDISRQLQVI-P----------------------KHRVELKQKQDDLTKQLEEEEEIYK 176 (385)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhcc-h----------------------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455567777888888877654 33311 0 001 111222222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 307 EKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIA 344 (357)
Q Consensus 307 ~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~ 344 (357)
.-+..+..-...-++.|..+| ++.+.+|..+++.
T Consensus 177 ~alk~l~nPaq~AlEDFYdWK----RSVFhdFtKLHLG 210 (385)
T PF15642_consen 177 AALKRLTNPAQAALEDFYDWK----RSVFHDFTKLHLG 210 (385)
T ss_pred HHHHHhcChHHHHHHHHHHHH----HHHHHHHHHHhhc
Confidence 334445555566777777776 3455666666554
No 199
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=78.96 E-value=79 Score=32.20 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q psy18202 30 SHIIPPLP 37 (357)
Q Consensus 30 ~~~iPplP 37 (357)
|..+|+|.
T Consensus 164 G~a~~~le 171 (569)
T PRK04778 164 GPALDELE 171 (569)
T ss_pred cchHHHHH
Confidence 44444444
No 200
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=78.45 E-value=47 Score=29.29 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy18202 126 SEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAI 168 (357)
Q Consensus 126 ~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~ 168 (357)
..+......++.+...+..+.+.-..+.....+++.++..+|.
T Consensus 19 ~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~ 61 (224)
T cd07623 19 QQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSN 61 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677777777777777777777777666666666665554
No 201
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=76.26 E-value=61 Score=29.48 Aligned_cols=148 Identities=17% Similarity=0.154 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHH--------HHHHHHHHHHHHHHHHhhhhhhhhcchhHH
Q psy18202 144 AFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIR--------QVSKAVDTTASLHKNLLIEPFHEHNSHPMK 215 (357)
Q Consensus 144 ~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 215 (357)
.+.+.+.+|++..+.+..++..+|..... .+..|. .++++.++++.++ ..+++...
T Consensus 54 e~sr~L~~LIk~EK~vi~s~e~~are~~~-------~A~~L~~WG~~edddl~DIsDklgvLl---------~e~ge~e~ 117 (271)
T PF13805_consen 54 ELSRKLQRLIKAEKSVIRSLESAARERKA-------AAKQLSEWGEQEDDDLSDISDKLGVLL---------YEIGELED 117 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTS-HHHHHHHHHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHhcCCCchHHHHHHHHHHHH---------HHHHHHHH
Confidence 35566778888888887777776655433 222322 2333333333321 24555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHh--
Q psy18202 216 DYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLST-- 293 (357)
Q Consensus 216 ~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~-- 293 (357)
.|....+..+..|+. ..+.+..++..+..+.+|. ++|.+|+.
T Consensus 118 ~~a~~~d~yR~~LK~-------IR~~E~sl~p~R~~r~~l~-----------------------------d~I~kLk~k~ 161 (271)
T PF13805_consen 118 QYADRLDQYRIHLKS-------IRNREESLQPSRDRRRKLQ-----------------------------DEIAKLKYKD 161 (271)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHhHHHH-----------------------------HHHHHHHhcC
Confidence 666666666666553 3345556665555555554 33444442
Q ss_pred ----hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 294 ----AIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRS 350 (357)
Q Consensus 294 ----~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~ 350 (357)
+|..||+++..++.+.. ..-.+|..|. ...+|+.+.--....+++.+|++
T Consensus 162 P~s~kl~~LeqELvraEae~l----vaEAqL~n~k---R~~lKEa~~~~f~Al~E~aEK~~ 215 (271)
T PF13805_consen 162 PQSPKLVVLEQELVRAEAENL----VAEAQLSNIK---RQKLKEAYSLKFDALIERAEKQA 215 (271)
T ss_dssp TTTTTHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhh----HHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444321 1113355554 34566666665666666665543
No 202
>PRK10869 recombination and repair protein; Provisional
Probab=74.63 E-value=1e+02 Score=31.29 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=6.0
Q ss_pred HHHHHHhhHhHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQ 301 (357)
Q Consensus 287 ki~~l~~~i~~le~~ 301 (357)
.++.|+.+++.++.+
T Consensus 342 ~l~~Le~e~~~l~~~ 356 (553)
T PRK10869 342 DLETLALAVEKHHQQ 356 (553)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 203
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=73.35 E-value=61 Score=28.12 Aligned_cols=120 Identities=12% Similarity=0.166 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG------YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~------~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
++++.+.+.++......-.++-..++.+-..+..++..+|. .-.+|+.+|-+++++...+..-++. ....+..
T Consensus 15 meqFNP~lrnlv~lGk~Y~kA~~a~t~aa~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~le~-~lk~FH~ 93 (215)
T cd07644 15 MEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSADLEV-VFQTFHV 93 (215)
T ss_pred HHhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 44555555555444444444444444444444445444442 1233788888888888777655544 2222222
Q ss_pred hcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 209 HNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 209 ~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
.+..+|.--. .++.-+.+ .+.+.+.++..-..+|+|..+++.++...
T Consensus 94 ell~~LEkk~elD~kyi~~---s~KkYq~E~r~k~dsleK~~selkk~rrk 141 (215)
T cd07644 94 DLLQHMDKNTKLDMQFIED---SRRVYELEYRHRAANLEKCMSELWRMERQ 141 (215)
T ss_pred HHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 2333332111 11111222 23445667777777888888877777765
No 204
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=73.05 E-value=68 Score=28.49 Aligned_cols=85 Identities=8% Similarity=0.117 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC------c--hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHH
Q psy18202 144 AFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY------E--PQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMK 215 (357)
Q Consensus 144 ~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~------E--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 215 (357)
.+.+....=+|.-++++..+..++.....+... . ..+++++..+-.-.+.++..... +++.++....+.|.
T Consensus 23 ~mk~~m~~raK~d~eya~~L~~~~~q~~k~~~~~~~~~~~~~s~i~~sW~~il~QTE~isk~~~~-~Aeeln~~~~~kLs 101 (237)
T cd07685 23 VMKKWMSQRAKSDREYSGMLHHMSAQVEKLDRSQHGALSMLSSPISQSWAVLVSQTETLSQVLRK-HAEDLNAGPLSKLS 101 (237)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhccccccchhhhcccCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 344444444566677887777776654332222 1 12677777777777777777665 77777667777777
Q ss_pred HHHHHHHHHHHHHH
Q psy18202 216 DYLMYIDAVKQVLA 229 (357)
Q Consensus 216 ~~~~~~~a~k~~l~ 229 (357)
-.....+.+|..+.
T Consensus 102 ~L~~~k~~~rK~~~ 115 (237)
T cd07685 102 LLIRDKQQLRKTFS 115 (237)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665443
No 205
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=72.76 E-value=73 Score=28.74 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=40.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTA---------------NNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i---------------~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~ 348 (357)
..+++++.....-+...+.++.++... --.+...++.|+..|...|+.++..+++.+....-.
T Consensus 162 ~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~~v~~~ 239 (252)
T cd07675 162 SDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADSERKVIPI 239 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344555555555555555555443322 222456788889999999999999999888766543
No 206
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=72.27 E-value=64 Score=27.91 Aligned_cols=105 Identities=10% Similarity=0.019 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHhhCCchhHHHHH--------HHH
Q psy18202 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQF-----------AIVLNTWAGYEPQLSSVI--------RQV 187 (357)
Q Consensus 127 ~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~-----------~~~~~~l~~~E~~l~~~l--------~~~ 187 (357)
++.+....++++...+..+.+.-..++....+++.++..+ +..|..|+..+..+.... ..+
T Consensus 12 yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~L 91 (198)
T cd07630 12 MNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTL 91 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4456666777777777777777777777777776666543 334444443333222222 223
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 188 SKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQA 236 (357)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~ 236 (357)
|..++..... .......|..=.+-+..|-.+-+.+=+.|.....
T Consensus 92 g~~L~~Y~r~-----i~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~k~~ 135 (198)
T cd07630 92 GLTLDLYSRY-----SESEKDMLFRRTCKLIEFENASKALEKAKPQKKE 135 (198)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Confidence 3333222222 2223345666667777777777777777665443
No 207
>PRK14155 heat shock protein GrpE; Provisional
Probab=71.65 E-value=31 Score=30.12 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=43.4
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
.++..++.++.+++...-.+..+++.+.+.+.+|.....+.-...|-.-|+..+
T Consensus 20 ~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~ 73 (208)
T PRK14155 20 QEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAA 73 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 788899999999999999999999999999998888887766666555554433
No 208
>KOG0996|consensus
Probab=69.54 E-value=1.8e+02 Score=32.01 Aligned_cols=26 Identities=15% Similarity=0.334 Sum_probs=12.0
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTAN 313 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~ 313 (357)
+.+++..+.+++..++.++.+++.+.
T Consensus 937 i~k~q~~l~~le~~~~~~e~e~~~L~ 962 (1293)
T KOG0996|consen 937 IAKAQKKLSELEREIEDTEKELDDLT 962 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 209
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=68.47 E-value=93 Score=28.19 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=35.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTA-------NNHLRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i-------~~~~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
+++++....+++.+.+.+..-..++.. -..+-.-++.++..|..-|+++|..+..+
T Consensus 175 ~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~~~ 237 (258)
T cd07680 175 DKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444443333333 23344667778888999999999988754
No 210
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=67.41 E-value=1.3e+02 Score=30.52 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=38.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
+.+++|+.++....++++.+..+++.--+.+...+...++....|++++...|+-
T Consensus 219 ~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~ 273 (555)
T TIGR03545 219 EEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAI 273 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCC
Confidence 4566666666666666777777777777777777777777777777777755553
No 211
>KOG0994|consensus
Probab=67.33 E-value=2e+02 Score=31.74 Aligned_cols=190 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred chhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHH
Q psy18202 105 MSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVI 184 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l 184 (357)
+..+...+... +.+.|.-....+.-|+.....+......+..+.......-..+...+..+..|...-..|....
T Consensus 1561 v~~~ae~V~ea-----L~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1561 VKGQAEDVVEA-----LEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy18202 185 RQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSS 264 (357)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~ 264 (357)
.+.+......-........... .-...++....+...+..++..|.. .-+.+.+..++.+.+..+|...
T Consensus 1636 ~qns~~A~~a~~~a~sa~~~A~--~a~q~~~~lq~~~~~~~~l~~~r~~---g~~~ar~rAe~L~~eA~~Ll~~------ 1704 (1758)
T KOG0994|consen 1636 AQNSAEAKQAEKTAGSAKEQAL--SAEQGLEILQKYYELVDRLLEKRME---GSQAARERAEQLRTEAEKLLGQ------ 1704 (1758)
T ss_pred HhccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHH------
Q ss_pred CCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 265 PTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLE 326 (357)
Q Consensus 265 ~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~ 326 (357)
....-++++.|+.+...-+.+++....++..+++.+..=++.-+..
T Consensus 1705 ----------------a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1705 ----------------ANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred ----------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
No 212
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=67.22 E-value=89 Score=27.52 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HHHHHHHHhhCCchhHHHHHHHHHH-HHHHHHHHH
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAH--------QFAIVLNTWAGYEPQLSSVIRQVSK-AVDTTASLH 198 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~--------~~~~~~~~l~~~E~~l~~~l~~~~~-~~~~~~~~~ 198 (357)
+.+....+.++...+..+.+.-..++..-..++..+. .++.+|..|+..+..+.......+. -.-.+++.+
T Consensus 32 l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t~L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L 111 (218)
T cd07663 32 LVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPTVIKKYLLKVAELFEKLRKVEDRVASDQDLKLTELL 111 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Confidence 3344455555555555554444444443333333332 3455555555444333322222211 111222222
Q ss_pred HHH--hhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy18202 199 KNL--LIEPFHEHNSHPMKDYLMYIDAVKQVLARRD 232 (357)
Q Consensus 199 ~~~--~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~ 232 (357)
.++ .....-..|..=++-+..|..+-+.+-+.|.
T Consensus 112 ~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~ 147 (218)
T cd07663 112 RYYMLNIEAAKDLLYRRARALADYENSNKALDKARL 147 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 1222224566777778888888888887774
No 213
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=66.69 E-value=94 Score=27.62 Aligned_cols=70 Identities=7% Similarity=0.063 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQ-VLARRDVIQAEHDMCGEELQKKTAE 251 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~-~l~~R~~~~~~~~~~~~~l~kk~~~ 251 (357)
+..++..+-...+.++..... ++..+. .+.++|..+...+...+. +...-..+......+...++|.+..
T Consensus 63 ~~~a~~~il~~~e~lA~~h~~-~a~~L~-~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~ 133 (234)
T cd07652 63 FSNAYHSSLEFHEKLADNGLR-FAKALN-EMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKAR 133 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655443 444442 566666666666655554 2233333444555555666666553
No 214
>PRK14141 heat shock protein GrpE; Provisional
Probab=66.23 E-value=48 Score=28.99 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=45.2
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
.++++.++.++++++...-.+..+++.+.+.+.+|.......-...+-.-|+..++
T Consensus 37 ~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViD 92 (209)
T PRK14141 37 PDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSD 92 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 37899999999999999999999999999999988888877666665555554443
No 215
>PRK14140 heat shock protein GrpE; Provisional
Probab=65.53 E-value=60 Score=27.92 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=39.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
.++..++.+++++++..-.+..+++.+.+.+.+|+..-...-...+-.-|....
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvl 97 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPAL 97 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888888888877766555555544444433
No 216
>PRK14161 heat shock protein GrpE; Provisional
Probab=65.37 E-value=56 Score=27.79 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=42.0
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
+.++..|+.++++++...-.+..+++.+.+.+.+|.......-...+-..|+..
T Consensus 25 ~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv 78 (178)
T PRK14161 25 NPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNV 78 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 367788888899999888899999999999988888877766665555555443
No 217
>PRK14151 heat shock protein GrpE; Provisional
Probab=65.34 E-value=54 Score=27.83 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
.++..++.+++++++..-.+..+++.+.+.+.+|.......-...+-.-|...
T Consensus 27 ~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv 79 (176)
T PRK14151 27 ARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPV 79 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 67788888888888888888888888888888888777666555554444433
No 218
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=64.93 E-value=1.5e+02 Score=29.16 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLI--EPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
+...+.++..++..+..-+...-. +.+...|--.-..|.+........+..|++...++-.....|.+|..+.++|..
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~ 467 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQ 467 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455566666665555443322111 112223444445677888888888899999999999999999999888888775
Q ss_pred c
Q psy18202 258 K 258 (357)
Q Consensus 258 ~ 258 (357)
.
T Consensus 468 l 468 (527)
T PF15066_consen 468 L 468 (527)
T ss_pred H
Confidence 4
No 219
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=64.56 E-value=1.4e+02 Score=28.98 Aligned_cols=20 Identities=15% Similarity=0.168 Sum_probs=10.7
Q ss_pred hcchhHHHHHHHHHHHHHHH
Q psy18202 209 HNSHPMKDYLMYIDAVKQVL 228 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l 228 (357)
.+.+....|.++..+...+|
T Consensus 333 ~l~~L~~~Y~~F~~aY~~LL 352 (412)
T PF04108_consen 333 ELEQLCEFYEGFLSAYDSLL 352 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455565666655544
No 220
>PRK14154 heat shock protein GrpE; Provisional
Probab=64.20 E-value=59 Score=28.38 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=40.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
.++..++.+++++++..-.+..+++.+.+.+.+|.......-...+-..|+..+
T Consensus 59 ~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVl 112 (208)
T PRK14154 59 GQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVA 112 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 678888888888888888888888888888888877777666655544444433
No 221
>PRK14139 heat shock protein GrpE; Provisional
Probab=64.19 E-value=59 Score=27.82 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=36.9
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
.++..++.++.++++..-.+..+++.+.+.+.+|.......-...+-.-|+..
T Consensus 39 ~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv 91 (185)
T PRK14139 39 AELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPV 91 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56777777777777777777788888888887777776665555554444443
No 222
>PRK14147 heat shock protein GrpE; Provisional
Probab=63.90 E-value=57 Score=27.57 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
.++..|+.++++++...-.+..+++.+.+.+.+|.......-...+-.-|+..
T Consensus 25 ~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv 77 (172)
T PRK14147 25 AEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPV 77 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67888888898888888888888988988888888777666555555444443
No 223
>PRK14157 heat shock protein GrpE; Provisional
Probab=63.44 E-value=55 Score=28.95 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=41.6
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
.++..++.++.++++++-.+..+++.+.+.+.+|.......-...+-.-|+.
T Consensus 84 ~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLp 135 (227)
T PRK14157 84 TPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLP 135 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5888899999999998889999999999999988888876665555554444
No 224
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=63.35 E-value=1.8e+02 Score=29.56 Aligned_cols=21 Identities=33% Similarity=0.172 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q psy18202 238 HDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 238 ~~~~~~~l~kk~~~~~kL~~~ 258 (357)
.+.+-+.+.+.++++..|...
T Consensus 320 ~~~l~~~~~~~~~el~~L~~~ 340 (557)
T COG0497 320 IEDLLEYLDKIKEELAQLDNS 340 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 445555666666666666654
No 225
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=63.08 E-value=1.1e+02 Score=27.23 Aligned_cols=10 Identities=40% Similarity=0.461 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy18202 242 GEELQKKTAE 251 (357)
Q Consensus 242 ~~~l~kk~~~ 251 (357)
.+.+.+.-.+
T Consensus 118 ~~el~~~~~e 127 (237)
T cd07657 118 DEQYKKLTDE 127 (237)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 226
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=62.93 E-value=1.5e+02 Score=28.77 Aligned_cols=32 Identities=13% Similarity=0.326 Sum_probs=23.4
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHH
Q psy18202 168 IVLNTWAGYEPQLSSVIRQVSKAVDTTASLHK 199 (357)
Q Consensus 168 ~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~ 199 (357)
..+..+...|.++.+.|..++.||+.+..+..
T Consensus 196 ~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~ 227 (412)
T PF04108_consen 196 TILKELHSLEQEMASLLESLTNHFDQCVTAVR 227 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444566688899999999999987755
No 227
>PRK14163 heat shock protein GrpE; Provisional
Probab=62.75 E-value=61 Score=28.41 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=37.9
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
.++..++.++.+++..+-.+..+++.+.+.+.+|.......-...|-.-|+..
T Consensus 47 ~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV 99 (214)
T PRK14163 47 AQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPV 99 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66777778888887777788888888888888777777665555555444443
No 228
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.57 E-value=78 Score=25.25 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLA 229 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~ 229 (357)
|++-+..+...++...++.+. ..+....+.+.+...-..+.+++.++.
T Consensus 66 LsqRId~vd~klDe~~ei~~~--i~~eV~~v~~dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQ--IKDEVTEVREDVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444455555555554444332 111122344444444444444444443
No 229
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=62.55 E-value=72 Score=27.50 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=43.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
+++..|+.++++++...-.+..+++.+.+.+.+|++..++.....+..-|+...
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpvi 96 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVI 96 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999988888877666655555544433
No 230
>PRK14149 heat shock protein GrpE; Provisional
Probab=62.29 E-value=66 Score=27.68 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=44.5
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
.+++..|+.++++++...-.+..+++.+.+.+.+|.......-...+-.-|+..+
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVl 96 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVI 96 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3789999999999999999999999999999998888877666555555544433
No 231
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=62.13 E-value=75 Score=24.88 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=18.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHL 316 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~ 316 (357)
+|++.++..++.++..+..+...++.+...+
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666555554443
No 232
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.43 E-value=1.5e+02 Score=28.24 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=21.2
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 208 EHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKE 253 (357)
Q Consensus 208 ~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~ 253 (357)
..|...+..|......+.++-.....+..........|.+-..+++
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELE 311 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3555555555555554444444444444433333444444444443
No 233
>PRK14158 heat shock protein GrpE; Provisional
Probab=61.29 E-value=73 Score=27.49 Aligned_cols=52 Identities=10% Similarity=0.012 Sum_probs=28.9
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
.++..++.++.++++..-.+..+++.+.+.+.+|.......-...+-.-|+.
T Consensus 47 ~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLp 98 (194)
T PRK14158 47 EALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILP 98 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555556666666666666666666655544444444433
No 234
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=61.27 E-value=1.2e+02 Score=26.87 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=54.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH------HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSE------AHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASL 197 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~------~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~ 197 (357)
..|-+.++-..-..|...+..+..++..+...-..++.. ..++|.++..+ +...+.+...++.....
T Consensus 18 ~~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i-------~~~~r~ie~~l~~~~~~ 90 (223)
T cd07605 18 FNPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSRGSQELGEALKQI-------VDTHKSIEASLEQVAKA 90 (223)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 556677776666777777666665555555444443332 23566666553 33333344333333322
Q ss_pred HHHHhhhhhhhhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 198 HKNLLIEPFHEHNSHPMKDYLMYIDAV-KQVLARRDVIQAEHDMCGEELQKKTA 250 (357)
Q Consensus 198 ~~~~~~~~~~~~l~~~l~~~~~~~~a~-k~~l~~R~~~~~~~~~~~~~l~kk~~ 250 (357)
+-+.+. ..+...+.....++..+ |+--..+.....+++.+...+.|.+.
T Consensus 91 ~~~~li----~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~K 140 (223)
T cd07605 91 FHGELI----LPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQK 140 (223)
T ss_pred HHHHHH----HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122 22333333333333333 23344444455556666666554443
No 235
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=60.32 E-value=47 Score=22.35 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=14.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHL 316 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~ 316 (357)
.||++|..+|..+..++..++++-.+.+..|
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544554444444443
No 236
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.10 E-value=2.1e+02 Score=29.38 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=30.4
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~ 348 (357)
+-|.+.-.+...++.++..+..++++ +..+..|+--=...|....+.+.+.++.++-.+.+-
T Consensus 505 ~eI~KIl~DTr~lQkeiN~l~gkL~R-tF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~L 566 (594)
T PF05667_consen 505 EEIEKILSDTRELQKEINSLTGKLDR-TFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQL 566 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444322 112223443333335556777777777777666543
No 237
>PRK14153 heat shock protein GrpE; Provisional
Probab=59.65 E-value=77 Score=27.35 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=35.5
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
.+++.++.+++++++..-.+..+++.+.+.+.+|.......-...+-.-|+.
T Consensus 40 ~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLp 91 (194)
T PRK14153 40 SETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLE 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777777777777777777788887777777766655544444444433
No 238
>PRK14144 heat shock protein GrpE; Provisional
Probab=59.58 E-value=77 Score=27.46 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=40.0
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
.++..++.+++++++..-.+..+++.+.+.+.+|.......-...+-..|+..+
T Consensus 52 ~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~ 105 (199)
T PRK14144 52 EQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVV 105 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 677888888888888888888888888888888877776665555555554443
No 239
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=59.44 E-value=7.5 Score=21.91 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q psy18202 57 RMKLLDQFLRR 67 (357)
Q Consensus 57 R~~~L~~fL~~ 67 (357)
|+..|++||.+
T Consensus 4 RK~SLqRFLeK 14 (27)
T PF09425_consen 4 RKASLQRFLEK 14 (27)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777888764
No 240
>KOG4571|consensus
Probab=59.11 E-value=77 Score=29.02 Aligned_cols=18 Identities=44% Similarity=0.350 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy18202 240 MCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 240 ~~~~~l~kk~~~~~kL~~ 257 (357)
.|.++-+|||++.+.|.+
T Consensus 238 AAtRYRqKkRae~E~l~g 255 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLG 255 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566777788887776654
No 241
>PRK14143 heat shock protein GrpE; Provisional
Probab=59.04 E-value=79 Score=28.26 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=24.5
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKIL 335 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l 335 (357)
++..++.++.+++.+.-.+..+++.+.+.+.+|.......-...+-.-|
T Consensus 75 el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~l 123 (238)
T PRK14143 75 ELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEI 123 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555666666666665555544444333333
No 242
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=58.88 E-value=2.1e+02 Score=29.06 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=7.3
Q ss_pred HHHHHHhhHhHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLE 303 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~ 303 (357)
.++.|+.++++++.++.
T Consensus 347 ~le~L~~el~~l~~~l~ 363 (563)
T TIGR00634 347 SLEALEEEVDKLEEELD 363 (563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 243
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=58.61 E-value=73 Score=23.61 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHL 316 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~ 316 (357)
+.++..|-.+|..+|.+|..++.........+
T Consensus 53 p~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 53 PKKAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888777777765554433
No 244
>KOG0250|consensus
Probab=57.95 E-value=2.9e+02 Score=30.28 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=25.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLR 317 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~ 317 (357)
+|...|+.+++.++..+..+..+.+.+.+.+.
T Consensus 401 ~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 401 NKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888877776665
No 245
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=57.81 E-value=1.4e+02 Score=26.61 Aligned_cols=108 Identities=16% Similarity=0.197 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------HHHHhhCCchhHHHHHHHHHH-HHHHHH
Q psy18202 126 SEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAI---------VLNTWAGYEPQLSSVIRQVSK-AVDTTA 195 (357)
Q Consensus 126 ~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~---------~~~~l~~~E~~l~~~l~~~~~-~~~~~~ 195 (357)
..+......++++...+..+.+.-..++....+++.++..+|. .|+.++..+..+.......+. -+-.++
T Consensus 29 ~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~qa~~d~~~l~ 108 (234)
T cd07664 29 QQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQAFADFYLFS 108 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3556677778888888777777777777666666666555544 444454443333322221111 111122
Q ss_pred HHHHHH--hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q psy18202 196 SLHKNL--LIEPFHEHNSHPMKDYLMYIDAVKQVLARRDV 233 (357)
Q Consensus 196 ~~~~~~--~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~ 233 (357)
..+.++ +....-..|..=.+-+..+..+-.++-+.|.+
T Consensus 109 e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~ 148 (234)
T cd07664 109 ELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREA 148 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 12223335555666666677666666666644
No 246
>PRK14159 heat shock protein GrpE; Provisional
Probab=57.52 E-value=93 Score=26.40 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=42.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
.++..++.+++++++..-.+..+++.+.+.+.+|.......-...+-..|+..
T Consensus 30 ~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV 82 (176)
T PRK14159 30 VEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDV 82 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 68889999999999999999999999999998888877766555554444433
No 247
>PRK14156 heat shock protein GrpE; Provisional
Probab=57.33 E-value=90 Score=26.51 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=41.5
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
..+++.++.+++++++..-.+..+++.+.+.+.+|.......-...+-.-|+..
T Consensus 33 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpV 86 (177)
T PRK14156 33 KSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPS 86 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 367888999999999999999999999999888888776665555554444433
No 248
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=56.92 E-value=1.4e+02 Score=26.46 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=27.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 294 AIPKLTSQLEICDEKLQTANNH---LRSDLERWRLEKKNDLKKILLKIADQQIAY 345 (357)
Q Consensus 294 ~i~~le~~~~~~~~~~~~i~~~---~~~El~rF~~~k~~~l~~~l~~~a~~qi~~ 345 (357)
+++.++..+..+....+..... ....+.+....-..+|..++..|=+...+.
T Consensus 154 e~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~R 208 (239)
T cd07647 154 EAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEER 208 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444443332 234566666666666666666554444433
No 249
>PRK14148 heat shock protein GrpE; Provisional
Probab=56.77 E-value=94 Score=26.86 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=32.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILL 336 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~ 336 (357)
+++..|+.++++++...-.+..+++.+.+.+.+|.......-...+-.-|.
T Consensus 47 ~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LL 97 (195)
T PRK14148 47 DTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELL 97 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666777777777777777666665554444444333
No 250
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=56.31 E-value=88 Score=23.83 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=18.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTA 312 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i 312 (357)
.++..+..+|..++.++..++.++..+
T Consensus 74 ~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 74 AEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777776665443
No 251
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=56.25 E-value=1.7e+02 Score=27.10 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18202 180 LSSVIRQVSKAVDTTASL 197 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~ 197 (357)
+...+..+-..|+.+..-
T Consensus 180 ~d~S~k~ik~~F~~l~~c 197 (302)
T PF07139_consen 180 MDSSIKKIKQTFAELQSC 197 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 252
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=55.51 E-value=86 Score=23.51 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=18.9
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTAN 313 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~ 313 (357)
+.+.|..+...+..+=+..|+.+++.++.+++.+......+.
T Consensus 48 y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~ 89 (106)
T PF01920_consen 48 YKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLE 89 (106)
T ss_dssp EEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334454444443334444444555555554544444443333
No 253
>KOG0933|consensus
Probab=55.30 E-value=3.1e+02 Score=29.86 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=39.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCch
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEP 178 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~ 178 (357)
+..+++...+.-+..++..|+.+.........-..++...+.+++-....+...|-
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~ 736 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEF 736 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 34456666677777888888888877777777777777777777766666655543
No 254
>PHA02562 46 endonuclease subunit; Provisional
Probab=55.22 E-value=2.4e+02 Score=28.45 Aligned_cols=9 Identities=22% Similarity=0.545 Sum_probs=4.6
Q ss_pred CCcceeecc
Q psy18202 5 DTECIVRRR 13 (357)
Q Consensus 5 ~~~~~V~RR 13 (357)
...|.|.|+
T Consensus 83 ~~~y~i~R~ 91 (562)
T PHA02562 83 EKEYYIKRG 91 (562)
T ss_pred CEEEEEEEe
Confidence 344555554
No 255
>PRK14145 heat shock protein GrpE; Provisional
Probab=54.89 E-value=1.1e+02 Score=26.46 Aligned_cols=53 Identities=8% Similarity=0.063 Sum_probs=33.6
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
.++..++.+++++....-.+..+++.+.+.+.+|.......-...+-..|+..
T Consensus 52 ~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV 104 (196)
T PRK14145 52 QKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPV 104 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45566666666666666667777777777777777766655555555444443
No 256
>PRK14164 heat shock protein GrpE; Provisional
Probab=53.29 E-value=1e+02 Score=27.11 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=42.3
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
..+..|+.++.+++..+..+..+++.+.+.+.+|.......-...+-.-|+..
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpV 129 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPI 129 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 67888999999999999999999999999998888887766555555555443
No 257
>PRK14162 heat shock protein GrpE; Provisional
Probab=52.98 E-value=1.2e+02 Score=26.20 Aligned_cols=41 Identities=10% Similarity=0.104 Sum_probs=21.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLE 326 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~ 326 (357)
.++..++.++++++...-.+..+++.+.+.+.+|.......
T Consensus 46 ~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~ 86 (194)
T PRK14162 46 KEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKY 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555544443
No 258
>PRK14160 heat shock protein GrpE; Provisional
Probab=52.82 E-value=1.6e+02 Score=25.80 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=16.1
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWR 324 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~ 324 (357)
+..++.++.+++...-.+..+++.+.+.+.+|.....
T Consensus 70 l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~ 106 (211)
T PRK14160 70 NKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIY 106 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 259
>PRK14146 heat shock protein GrpE; Provisional
Probab=52.53 E-value=1.1e+02 Score=26.84 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=40.4
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
.++..++.+++++++..-.+..+++.+.+.+.+|+......-...+-.-|+..+
T Consensus 61 ~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~ 114 (215)
T PRK14146 61 KELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPI 114 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 567788888888888888888888888888888888777666555555544433
No 260
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=52.15 E-value=1.7e+02 Score=25.83 Aligned_cols=107 Identities=9% Similarity=0.049 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhCCchhHHHHHHHHHHHHHHHH--------HH
Q psy18202 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLN-TWAGYEPQLSSVIRQVSKAVDTTA--------SL 197 (357)
Q Consensus 127 ~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~-~l~~~E~~l~~~l~~~~~~~~~~~--------~~ 197 (357)
++.+....+..+...+..+...-..++.....++.++..+|.+-. .|+..-..|++.+..+.....+.+ +.
T Consensus 32 ~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~ 111 (219)
T cd07621 32 FLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEPTPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDT 111 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 344556666666666666666666666666666666555554321 111111123333333333322222 22
Q ss_pred HHHH--hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q psy18202 198 HKNL--LIEPFHEHNSHPMKDYLMYIDAVKQVLARRDV 233 (357)
Q Consensus 198 ~~~~--~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~ 233 (357)
+..+ .....-..|..=++-+..|..+-+.+-+.|.+
T Consensus 112 L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k 149 (219)
T cd07621 112 LRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARAK 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 2221 12223346677777888888888888888853
No 261
>PRK14160 heat shock protein GrpE; Provisional
Probab=51.53 E-value=1.2e+02 Score=26.50 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=26.5
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHL---RSDLERWRLEKKNDLKK 333 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~---~~El~rF~~~k~~~l~~ 333 (357)
.++..++.++..++.++..++.++..+...+ ..|++.|++...++...
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 104 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEG 104 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555443 35666666555554443
No 262
>PRK14162 heat shock protein GrpE; Provisional
Probab=51.13 E-value=1.6e+02 Score=25.40 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=30.8
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLK 332 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~ 332 (357)
.+.+..++.+|+.++.+++.+++++- .+..|+++|++...++..
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~l----R~~AEfeN~rkR~~kE~e 81 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYL----RSQAEIQNMQNRYAKERA 81 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 37888899999999988888877763 344566666655444433
No 263
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=50.43 E-value=61 Score=26.81 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=34.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
.++..++.+++++++....+..+++.+.+.+.+|.......-...+-..|....
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~ 71 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVL 71 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777666665544444444444433
No 264
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=50.13 E-value=1.3e+02 Score=23.84 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=33.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLR---SDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~---~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
+.+.....++..++.+++.++.+++..-..+. +++.--+.+ ..|+|.|+..-++
T Consensus 61 e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~D-v~DlK~myr~Qi~ 117 (120)
T PF12325_consen 61 EELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRAD-VQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44555566666677777777777766655553 455555544 6788887776544
No 265
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=50.03 E-value=2.2e+02 Score=26.58 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=29.6
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKIL 335 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l 335 (357)
|+|--|+.+|+++++++..++.+++.+.+.+ +|-++|..-|...|
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L-----~faqekn~LlqslL 219 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEITKKDL-----KFAQEKNALLQSLL 219 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 7777778888888887777777777665554 35555544444443
No 266
>KOG3691|consensus
Probab=48.97 E-value=2.6e+02 Score=29.83 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~ 200 (357)
..+-++|.+||..++.+..-..+ +..++..+|++...+.+..+.
T Consensus 53 ~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rer 97 (982)
T KOG3691|consen 53 ERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRER 97 (982)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556688888888877655433 777888788777777665443
No 267
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=48.37 E-value=50 Score=21.90 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 218 LMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 218 ~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
.+++..+|.+....++.+.++.+....+++.+.+..||+.
T Consensus 13 sGDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 13 SGDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred cCcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 3567788999999999999999999999999999888763
No 268
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=47.17 E-value=14 Score=22.45 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCccccCChhhh
Q psy18202 60 LLDQFLRRVTSHPVLSVNSHAI 81 (357)
Q Consensus 60 ~L~~fL~~i~~hp~L~~~~~~~ 81 (357)
.|..||+.|.++|.|...+++.
T Consensus 3 ~l~~Yl~ei~~~~LLt~eeE~~ 24 (37)
T PF00140_consen 3 SLRLYLKEIGRYPLLTAEEEIE 24 (37)
T ss_dssp HHHHHHHHHHHS-EETTHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHH
Confidence 5789999999999999887653
No 269
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=46.63 E-value=1.3e+02 Score=24.76 Aligned_cols=50 Identities=24% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 291 LSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 291 l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
++.....+...++.+++......+....|+..+...-.+||..+...+..
T Consensus 9 ~~~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 9 LEHSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777777777788888887777777777776666
No 270
>PRK14143 heat shock protein GrpE; Provisional
Probab=46.27 E-value=2e+02 Score=25.65 Aligned_cols=45 Identities=18% Similarity=0.409 Sum_probs=32.3
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKI 334 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~ 334 (357)
+.+..|+.+|..++.+++.+++++- .+..|+++|++...++...+
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~l----R~~AdfeN~RKR~~kE~e~~ 111 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYM----RIAADFDNFRKRTSREQEDL 111 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 6888899999888888887777763 34567777776655555443
No 271
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.78 E-value=49 Score=22.19 Aligned_cols=32 Identities=13% Similarity=0.341 Sum_probs=17.6
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLR 317 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~ 317 (357)
.++.+++..|..++.+.+.+....+.+.++++
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555553
No 272
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.75 E-value=92 Score=20.99 Aligned_cols=39 Identities=13% Similarity=0.345 Sum_probs=24.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHL---RSDLERWR 324 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~---~~El~rF~ 324 (357)
.||++|..+|..|..++.++..+...+...+ +.|-.|=.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN 44 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777776665555443 34555543
No 273
>KOG4796|consensus
Probab=44.74 E-value=2.6e+02 Score=28.09 Aligned_cols=29 Identities=14% Similarity=-0.022 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 328 KNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 328 ~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
...|..-|...=.+=.+|-++....|..|
T Consensus 576 ceYLhsKLaHIK~lI~efDk~~~~s~s~~ 604 (604)
T KOG4796|consen 576 CEYLHSKLAHIKTLIGEFDKQQRSSWSNV 604 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 34455555444444445555566667653
No 274
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.48 E-value=2.7e+02 Score=26.04 Aligned_cols=39 Identities=15% Similarity=0.356 Sum_probs=19.0
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWR 324 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~ 324 (357)
.+++.+..++.++..++..++...+........|+.+.+
T Consensus 244 ~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk 282 (325)
T PF08317_consen 244 EKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLK 282 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 344555555555555555555544444333444554443
No 275
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=44.29 E-value=1.2e+02 Score=24.85 Aligned_cols=57 Identities=9% Similarity=0.240 Sum_probs=38.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYY 346 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~ 346 (357)
.++..++.++..++.. +.++...|......++...... ...|...|..||+.+.+-.
T Consensus 10 ~ki~~l~~~~~~i~~~---~~~~I~~i~~~~~~~~~~l~~~-i~~l~~~l~~y~e~~r~e~ 66 (149)
T PF07352_consen 10 RKIAELQREIARIEAE---ANDEIARIKEWYEAEIAPLQNR-IEYLEGLLQAYAEANRDEL 66 (149)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCHHhc
Confidence 4555555555555433 3456667777777888888654 6788888888888776543
No 276
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=44.12 E-value=2.5e+02 Score=25.50 Aligned_cols=68 Identities=12% Similarity=0.200 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 133 QYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 133 ~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
..+..+...+..+...+..+.....++...+.++......+..-..+|...|..++...+....++.+
T Consensus 49 ~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~~~l~~ 116 (267)
T PF11887_consen 49 PRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSATGLADTGTDFLAD 116 (267)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666666667777777777776666666666777777777776666665443
No 277
>PLN02866 phospholipase D
Probab=43.82 E-value=19 Score=38.87 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccccCChhhhccccccc
Q psy18202 51 KEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAKL 88 (357)
Q Consensus 51 ~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~~~~ 88 (357)
+.+..+++.+||.||+.++.++.+++++.+..||+-+.
T Consensus 135 ~~~~~r~~~~~~~yL~~~l~~~~~~n~~~~~~FlevS~ 172 (1068)
T PLN02866 135 QSISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEVSK 172 (1068)
T ss_pred ccccHHHHHHHHHHHHHHhccchhcCCHhhhhheeece
Confidence 34455667779999999999999999999999999774
No 278
>KOG2856|consensus
Probab=43.71 E-value=3e+02 Score=26.28 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=32.4
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHL--------------RSDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~--------------~~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
++.+.+|+..++...++++..+.+++..-..+ -+--+.|...|-+-|+.||.+.-.
T Consensus 176 peq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v~~ 245 (472)
T KOG2856|consen 176 PEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKVQR 245 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666654432222 123456677777777777766433
No 279
>PRK14139 heat shock protein GrpE; Provisional
Probab=43.53 E-value=2.1e+02 Score=24.49 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=33.4
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDL----KKILLKIADQQI 343 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l----~~~l~~~a~~qi 343 (357)
+.+..++.+|.+++.++..+++++-+ +..|+++|.+...++. +.....++..-+
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR----~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LL 89 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLR----AKAETENVRRRAQEDVAKAHKFAIESFAESLL 89 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888888888887777633 4456666655444443 334444444433
No 280
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=43.45 E-value=1.7e+02 Score=23.38 Aligned_cols=49 Identities=29% Similarity=0.354 Sum_probs=32.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTA---NNHLRSDLERWRLEKKNDLKKIL 335 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i---~~~~~~El~rF~~~k~~~l~~~l 335 (357)
-+|+.|-..|.+++++...+..++... .+.+.+|++-.+.++. -+..++
T Consensus 6 P~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~Ekv-hLeeil 57 (134)
T PF15233_consen 6 PQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKV-HLEEIL 57 (134)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHH
Confidence 367888888888888777777765444 3456678887776654 444444
No 281
>KOG2398|consensus
Probab=42.82 E-value=4e+02 Score=27.50 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=35.6
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNH-------LRSDLERWRLEKKNDLKKILLKIADQQIAY 345 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~-------~~~El~rF~~~k~~~l~~~l~~~a~~qi~~ 345 (357)
.++.+.+..|.++..+...+-+.++.+.+. +...++.....+-..|+..|..|+..--+.
T Consensus 139 ~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~ 205 (611)
T KOG2398|consen 139 KELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISES 205 (611)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666655555555555544433 345666666667777777777777654433
No 282
>PRK10698 phage shock protein PspA; Provisional
Probab=42.33 E-value=2.4e+02 Score=24.83 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=44.4
Q ss_pred CccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy18202 100 GLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA 174 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~ 174 (357)
|+|+++.+.+..-...+. -+-.||. .-+..++.++...+..+...+.+++...+.+...+...-.....|.
T Consensus 2 ~if~Rl~~ii~a~in~~l---dkaEDP~-k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e 72 (222)
T PRK10698 2 GIFSRFADIVNANINALL---EKAEDPQ-KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQ 72 (222)
T ss_pred CHHHHHHHHHHhHHHHHH---HhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666554443222221 1122433 3467788888888888888888887777777777777766666653
No 283
>PRK05849 hypothetical protein; Provisional
Probab=40.79 E-value=65 Score=34.15 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=53.5
Q ss_pred hCCCCCCCCCCCccccchh--h------hcCCHHHHH--HHHHHHHHHHHHHHcCccccCChhhhccccccccchhhccc
Q psy18202 27 TLPSHIIPPLPEKHSLLEH--L------NRYSKEFIL--CRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKK 96 (357)
Q Consensus 27 ~~p~~~iPplP~K~~~~~~--~------~~~~~~fie--~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~~~~~~~~~~~k 96 (357)
+|+..-++|-|-...+.|. + +.|=|.=|. --.+.++-||+++.+||.|..--+|....++=+.++..+-+
T Consensus 296 ~~GYr~~r~~~Lm~~f~g~Pyidvr~SfnsfiP~~l~~~~a~klv~~y~~~L~~~p~~HDKiEF~iv~scy~~~~~~~~~ 375 (783)
T PRK05849 296 NYGYRDLRSHPLMHSFAGIPYIDVRLSFNSFIPAGLDEKIAEKLVNAYLDKLAKNPELHDKIEFEIVFSCYDFTLDKKLE 375 (783)
T ss_pred hCCCCcCCCchHHHHhCCCceEEehhhhhccCcccccHHHHHHHHHHHHHHHHhCcccccceeEEEeeeecCCCCchHHH
Confidence 5666777777755554331 1 122111111 12568899999999999999999999998887544443222
Q ss_pred --CCCCc----cccchhhhhhhhhh
Q psy18202 97 --HSPGL----LNKMSESFYNLTNI 115 (357)
Q Consensus 97 --~~~~~----~~~~~~~~~~~~~~ 115 (357)
...|| ...+..++..++..
T Consensus 376 ~l~~~~fs~~e~~~~~~~l~~lT~~ 400 (783)
T PRK05849 376 ELLPGGFSENEIKRIEFSLLKLTNR 400 (783)
T ss_pred HHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 23343 23455566666554
No 284
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=40.72 E-value=2.3e+02 Score=24.22 Aligned_cols=142 Identities=15% Similarity=0.234 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMY--IDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
|+.+-..+|.+-..+-.-.++ +...+...+.+||+..+.- +...+.+-.+-+++-.+-+....+..+.+.....
T Consensus 59 LsrAa~~yG~a~~~mEkEre~-l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~re--- 134 (209)
T cd07607 59 LSRASLHYGSARNQMEKEREN-LHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKE--- 134 (209)
T ss_pred HHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 666666666665555544444 5555556788888865432 2334444444444444444443343333322211
Q ss_pred cCCCCCCCCCCCcccCCCcccccCCccH-HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 258 KDSDSSSPTSSTATSSTNSYSLWKSTSE-DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILL 336 (357)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~ 336 (357)
. + ++++. .|.+..+.++.++......+-.+ ...-+.-.+.+.++---.-|.
T Consensus 135 s----~-----------------~~~e~~~KL~~AE~Kl~elks~M~~LGKE-------A~aAm~aVEaQQQrlTlqRL~ 186 (209)
T cd07607 135 S----G-----------------GNPDNAAKLQSAESKLDELKSSMNTLGKE-------ATSAMLAVEDQQQQVTLQRLL 186 (209)
T ss_pred c----C-----------------CChHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 11233 67777777776666555544443 222223333333344444567
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy18202 337 KIADQQIAYYQQRSDRG 353 (357)
Q Consensus 337 ~~a~~qi~~~~~~~~~W 353 (357)
..++.+-.||+..++|.
T Consensus 187 amVeaEr~Yhqrv~~IL 203 (209)
T cd07607 187 AMVEAERAYHQRAADIL 203 (209)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888998888764
No 285
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=40.51 E-value=4.6e+02 Score=27.57 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=39.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQI 343 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi 343 (357)
.|..+|+.+|..|+.++...++....+...+ .|+..+.++-..|.-..|..++.+|=
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~-~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESEL-QELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 7888999999999888888888776666655 66777743344555555555555543
No 286
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.50 E-value=2.7e+02 Score=24.91 Aligned_cols=37 Identities=0% Similarity=0.036 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy18202 138 LYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA 174 (357)
Q Consensus 138 l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~ 174 (357)
+...+..+......++.....|+..+..|+..+..++
T Consensus 84 l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s 120 (240)
T cd07667 84 YLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCS 120 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444445555555555444443
No 287
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=40.12 E-value=2.8e+02 Score=28.34 Aligned_cols=59 Identities=14% Similarity=0.295 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
.+.+|.++.+..+.-++++.. +...+... +.....++.+++.|-+.+.+ .++.+||-.|
T Consensus 271 ~~~Al~KiQ~VVN~q~~aL~~-L~~qL~nn-------F~AISssI~dIy~RLd~leA------------daQVDRLItG 329 (610)
T PF01601_consen 271 TASALNKIQDVVNQQGQALNQ-LTSQLSNN-------FGAISSSIQDIYNRLDQLEA------------DAQVDRLITG 329 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------CCHHHHHHHHHHHHHHHHHH------------H---------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-------hhhhHHHHHHHHHHHHHHhh------------cccccccccc
Confidence 345555555555555554433 32222222 23355666666665554332 3455776654
No 288
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=40.09 E-value=92 Score=25.73 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=40.4
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~ 348 (357)
.+.+..++.+|..++.+++.+.+.+......+..=..+..+.+......++..++..-+..+..
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~ 73 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDN 73 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888999999999888888887655544443334444444444444556666665555443
No 289
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=39.80 E-value=2.5e+02 Score=24.30 Aligned_cols=65 Identities=9% Similarity=0.157 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Q psy18202 129 EQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDT 193 (357)
Q Consensus 129 ~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~ 193 (357)
..+...+..++.....+.+....+.....+++..+..+|..=..|+..-..++.++..++...+.
T Consensus 24 ~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~ 88 (201)
T cd07622 24 DELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDN 88 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666666666666666666666555544443322333444333333333
No 290
>PRK14154 heat shock protein GrpE; Provisional
Probab=39.61 E-value=2.6e+02 Score=24.43 Aligned_cols=44 Identities=9% Similarity=0.234 Sum_probs=30.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKK 333 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~ 333 (357)
-.+..|+.+|.+++.+++.+++++- .+..|+++|++...++...
T Consensus 52 ~~~~~l~~el~~le~e~~elkd~~l----Rl~ADfeNyRKR~~kE~e~ 95 (208)
T PRK14154 52 PSREKLEGQLTRMERKVDEYKTQYL----RAQAEMDNLRKRIEREKAD 95 (208)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3567788899999888887777763 4456777776655555444
No 291
>PRK14158 heat shock protein GrpE; Provisional
Probab=39.54 E-value=2.5e+02 Score=24.23 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=29.9
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLK 332 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~ 332 (357)
+.+..++.++.+++.+++.+++++-+ +..|+++|.+...++..
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR----~~AefeN~RkR~~kE~e 82 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLR----ERADLENYRKRVQKEKE 82 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 77888988998888888888777643 44566666555444443
No 292
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.48 E-value=4.3e+02 Score=26.90 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHcCccccCC
Q psy18202 57 RMKLLDQFLRRVTSHPVLSVN 77 (357)
Q Consensus 57 R~~~L~~fL~~i~~hp~L~~~ 77 (357)
+-..|+.+-+.|...|+--.=
T Consensus 26 ~i~~Le~~k~~l~~~pv~~el 46 (560)
T PF06160_consen 26 EIDELEERKNELMNLPVADEL 46 (560)
T ss_pred HHHHHHHHHHHHHcCCHHHHH
Confidence 345788888888888875543
No 293
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.32 E-value=2.6e+02 Score=24.32 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=46.6
Q ss_pred CccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy18202 100 GLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTW 173 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l 173 (357)
|+|+++...+......+. -+-.||. .-+..+|..++..+..+...+..+......+...+...-.....|
T Consensus 1 ~lf~Rl~~~~~a~~~~~l---d~~EDP~-~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 1 GLFKRLKTLVKANINELL---DKAEDPE-KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW 70 (221)
T ss_pred CHHHHHHHHHHHHHHHHH---HhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666555443332221 1223555 667888999999999998888888888877777776666666555
No 294
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=38.92 E-value=3.5e+02 Score=26.44 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=17.0
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTA 312 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i 312 (357)
+++.+++.+|.+++.++..++.++..+
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 73 AEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777766666666665443
No 295
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.65 E-value=6.4e+02 Score=28.72 Aligned_cols=44 Identities=11% Similarity=-0.028 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLN 171 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~ 171 (357)
..++..-+..+...+..+......+......+...+..+-..+.
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~ 867 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTN 867 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444444444444444444433333
No 296
>PLN02678 seryl-tRNA synthetase
Probab=38.06 E-value=4.1e+02 Score=26.26 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=17.0
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQT 311 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~ 311 (357)
+++..|..+|..++.++..++.++..
T Consensus 78 ~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 78 AETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777766666666543
No 297
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=37.67 E-value=54 Score=17.76 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=11.6
Q ss_pred HHHHHhhHhHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEIC 305 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~ 305 (357)
|+.+...|.+||.++..+
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666777777666544
No 298
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.50 E-value=1.3e+02 Score=20.24 Aligned_cols=30 Identities=13% Similarity=0.462 Sum_probs=18.1
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHL 316 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~ 316 (357)
|+..++.++..++..+..++.+.+.+++.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESV 30 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666655555443
No 299
>PRK14155 heat shock protein GrpE; Provisional
Probab=37.12 E-value=2.9e+02 Score=24.18 Aligned_cols=54 Identities=9% Similarity=0.158 Sum_probs=32.5
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDL----KKILLKIADQQI 343 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l----~~~l~~~a~~qi 343 (357)
+....++.+|+.++.++..+++++-+ +..|+++|++...++. +..+..|+...+
T Consensus 13 ~~~~~l~~~l~~le~e~~elkd~~lR----~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL 70 (208)
T PRK14155 13 FEADDAAQEIEALKAEVAALKDQALR----YAAEAENTKRRAEREMNDARAYAIQKFARDLL 70 (208)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34477888888888888877776643 3456666655544444 444444444443
No 300
>PRK11020 hypothetical protein; Provisional
Probab=37.05 E-value=2e+02 Score=22.39 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=18.7
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHH
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEK 308 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~ 308 (357)
+.+.+.++..+|+.++.++..++..
T Consensus 29 d~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 29 DAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888877766654
No 301
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.94 E-value=2.7e+02 Score=23.91 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy18202 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTW 173 (357)
Q Consensus 127 ~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l 173 (357)
....+...+..++.....+.+....+.....+++..+..+|.+=..|
T Consensus 22 yi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L 68 (200)
T cd07624 22 YLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETEL 68 (200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 34455555666666666666666666666666666665555444333
No 302
>KOG0804|consensus
Probab=36.49 E-value=4.2e+02 Score=25.99 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=14.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICD 306 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~ 306 (357)
+|..+++.+++.++++....+
T Consensus 382 ~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777776666444
No 303
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=36.38 E-value=3.3e+02 Score=24.76 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=10.3
Q ss_pred hCCCCCCCCCCCccc
Q psy18202 27 TLPSHIIPPLPEKHS 41 (357)
Q Consensus 27 ~~p~~~iPplP~K~~ 41 (357)
-||...+||-|.+..
T Consensus 8 l~~~~~~~~~~~~~s 22 (269)
T PF05278_consen 8 LFPEILLSPRSRPVS 22 (269)
T ss_pred eehhhccCCccCCCC
Confidence 478888887775553
No 304
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=36.36 E-value=2.4e+02 Score=23.10 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=23.5
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 209 HNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQK 247 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~k 247 (357)
.+...+..|...+.++..-+..-.....+++.+.+.|+.
T Consensus 10 ~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~ 48 (145)
T COG1730 10 ELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLEN 48 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666677666666555666666665555543
No 305
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.28 E-value=2.7e+02 Score=23.66 Aligned_cols=41 Identities=7% Similarity=0.152 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVL 170 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~ 170 (357)
++...+..++.....+.+....+.....+++..+..+|..-
T Consensus 15 ~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E 55 (185)
T cd07628 15 KLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLE 55 (185)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444444444444444444455555555554444444433
No 306
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.07 E-value=5.5e+02 Score=27.13 Aligned_cols=29 Identities=0% Similarity=0.140 Sum_probs=13.5
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANN 314 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~ 314 (357)
...+.++..+.+...+++.+-.+...|.+
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454444445544444444443
No 307
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.00 E-value=3.3e+02 Score=24.52 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=20.6
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTAN 313 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~ 313 (357)
.|...||.++..+..++..++.+.+.+.
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788777777777777777766654
No 308
>PHA02135 hypothetical protein
Probab=35.95 E-value=29 Score=26.12 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=16.9
Q ss_pred HhCCCCCCCCCCCccccchhhhc
Q psy18202 26 ETLPSHIIPPLPEKHSLLEHLNR 48 (357)
Q Consensus 26 ~~~p~~~iPplP~K~~~~~~~~~ 48 (357)
+++||..|||+-.+++. ++++.
T Consensus 42 ~~~~~~~v~pm~~~ps~-~yl~~ 63 (122)
T PHA02135 42 SNYPGISVPPMKGKPTM-GYLGE 63 (122)
T ss_pred cCCCccccCccCCCCcc-hhhhc
Confidence 47889999999999876 44443
No 309
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=34.66 E-value=1.7e+02 Score=20.94 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh--CCc-hhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA--GYE-PQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~--~~E-~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
|..+..+++.-...+..+....+.-+....+++..+..++..+..-. ..+ ..+..++..+-...+.++..+..
T Consensus 11 ~~~l~~~~~~~~~~~~~l~~~~keRa~lE~~Yak~L~kl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~a~~h~~ 86 (91)
T PF00611_consen 11 FEVLFKRLKQGIKLLEELASFFKERASLEEEYAKSLQKLAKKFKKKMKSSQEYGTLKNAWDSLLEETEQIAEQHSK 86 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444544444444555666777777766665432 122 23777777777777777665544
No 310
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=34.30 E-value=3.3e+02 Score=24.01 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=20.1
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHH
Q psy18202 208 EHNSHPMKDYLMYIDAVKQVLARRDV 233 (357)
Q Consensus 208 ~~l~~~l~~~~~~~~a~k~~l~~R~~ 233 (357)
.-|..-++-+..|-.|-+.+-+.|.+
T Consensus 123 dll~rR~r~l~~~enA~k~L~KaR~~ 148 (218)
T cd07662 123 DLLYRRSRSLVDYENANKALDKARAK 148 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35666677788888888888888877
No 311
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.20 E-value=2.7e+02 Score=23.09 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCcc-HHHHHHHHhhHhHHHHHHHHHHHHH
Q psy18202 235 QAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTS-EDRLEKLSTAIPKLTSQLEICDEKL 309 (357)
Q Consensus 235 ~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~ki~~l~~~i~~le~~~~~~~~~~ 309 (357)
..++..........++++..|.+. + +..+ ...+..|+.++..++..++.++...
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~-----~----------------t~~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSE-----P----------------TNEELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-----C----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334445555666666667666643 1 0011 1566666666666666666655543
No 312
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=34.11 E-value=4.8e+02 Score=25.86 Aligned_cols=202 Identities=9% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLHKNLLIEPFH 207 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 207 (357)
+++.-++.++..+.++.....+|...+..++.+..++...++-=+..+.. ++..+..+-.-+..-.+..-. -.++-.
T Consensus 404 eaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~-~e~nks 482 (622)
T COG5185 404 EAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIK-TEENKS 482 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHH-HHhccc
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccc
Q psy18202 208 EHNSHPMKDYLMYIDAVKQVLARRDVIQA--------EHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSL 279 (357)
Q Consensus 208 ~~l~~~l~~~~~~~~a~k~~l~~R~~~~~--------~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~ 279 (357)
.++.+.++..-..+....+.+..-+..+. .-+.+...+.+-+.+.++|+..-.+-.-
T Consensus 483 i~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL--------------- 547 (622)
T COG5185 483 ITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNL--------------- 547 (622)
T ss_pred eeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh---------------
Q ss_pred cCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 280 WKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 280 ~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.....+-.+++.|...+-..+.+...++.-...+.+++-.|-.. ..+|+-.+++=....-.-+.+.++
T Consensus 548 ---~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~-~~~fk~~IQssledl~~~l~k~~~ 615 (622)
T COG5185 548 ---LSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDI-TSKFKINIQSSLEDLENELGKVIE 615 (622)
T ss_pred ---hccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHhhHHHHHHHHHHHHH
No 313
>PRK14163 heat shock protein GrpE; Provisional
Probab=33.74 E-value=3.3e+02 Score=23.91 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=32.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKND----LKKILLKIADQQI 343 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~----l~~~l~~~a~~qi 343 (357)
.-...++.+|..++.+++.+++++-+ +..|+++|++...++ .+.....|+...+
T Consensus 40 ~~~~~l~~~l~~l~~e~~el~d~~lR----~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LL 97 (214)
T PRK14163 40 AATAGLTAQLDQVRTALGERTADLQR----LQAEYQNYRRRVERDRVTVKEIAVANLLSELL 97 (214)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677888888888888887777643 345666555544444 4444444444433
No 314
>KOG0972|consensus
Probab=33.67 E-value=3.9e+02 Score=24.67 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHcCc
Q psy18202 58 MKLLDQFLRRVTSHP 72 (357)
Q Consensus 58 ~~~L~~fL~~i~~hp 72 (357)
-..|..||-+-+-.|
T Consensus 61 ftsLaawLikk~G~e 75 (384)
T KOG0972|consen 61 FTSLAAWLIKKSGQE 75 (384)
T ss_pred HHHHHHHHHHhcCCc
Confidence 345666666655443
No 315
>KOG4403|consensus
Probab=33.52 E-value=4.7e+02 Score=25.57 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 238 HDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLR 317 (357)
Q Consensus 238 ~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~ 317 (357)
-+++.+.|..++...+||...- ++.-++.....|.+ ++++..+ +-.++..+..++.++.
T Consensus 356 rqnaekql~~Ake~~eklkKKr-----ssv~gtl~vahgss---------lDdVD~k-------Ileak~al~evtt~lr 414 (575)
T KOG4403|consen 356 RQNAEKQLKEAKEMAEKLKKKR-----SSVFGTLHVAHGSS---------LDDVDHK-------ILEAKSALSEVTTLLR 414 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHhh-----cchheeeeeccccc---------hhhHHHH-------HHHHHHHHHHHHHHHH
Confidence 3677888888888888887651 01100011112221 2333333 3445555667888888
Q ss_pred HHHHHHHHH
Q psy18202 318 SDLERWRLE 326 (357)
Q Consensus 318 ~El~rF~~~ 326 (357)
+-+.||++.
T Consensus 415 Erl~RWqQI 423 (575)
T KOG4403|consen 415 ERLHRWQQI 423 (575)
T ss_pred HHHHHHHHH
Confidence 888888643
No 316
>PRK14153 heat shock protein GrpE; Provisional
Probab=33.35 E-value=3.1e+02 Score=23.66 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=28.5
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLK 332 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~ 332 (357)
.++..+..+|+.++.+++.+++++- .+..|++.|.+....+..
T Consensus 33 ~~~~~~~~ei~~l~~e~~elkd~~l----R~~AEfeN~rKR~~kE~e 75 (194)
T PRK14153 33 PEDSTADSETEKCREEIESLKEQLF----RLAAEFDNFRKRTAREME 75 (194)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4567778888888887777776663 345677777665555533
No 317
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.09 E-value=3.6e+02 Score=24.09 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q psy18202 327 KKNDLKKILLK 337 (357)
Q Consensus 327 k~~~l~~~l~~ 337 (357)
|...++.+|.+
T Consensus 132 Rl~~L~~~l~~ 142 (251)
T PF11932_consen 132 RLARLRAMLDD 142 (251)
T ss_pred HHHHHHHhhhc
Confidence 33444444433
No 318
>KOG0996|consensus
Probab=33.09 E-value=7.3e+02 Score=27.71 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHcCccccCC
Q psy18202 57 RMKLLDQFLRRVTSHPVLSVN 77 (357)
Q Consensus 57 R~~~L~~fL~~i~~hp~L~~~ 77 (357)
|..-|-.-+..=..||-|..+
T Consensus 140 R~~klS~LIh~S~~~~~l~SC 160 (1293)
T KOG0996|consen 140 RSKKLSALIHKSDGHPNLQSC 160 (1293)
T ss_pred hHHHHHHHHhccCCCCCCcce
Confidence 334444444444456666533
No 319
>KOG3003|consensus
Probab=32.60 E-value=3.6e+02 Score=23.97 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=41.1
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIA 344 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~ 344 (357)
+.-+++.++.++...+..+-.+++.+...+.+.++.++....+.|..-|.+.++.+-.
T Consensus 78 ~~~k~~~e~~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~ 135 (236)
T KOG3003|consen 78 KVLKLEKEEQELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEK 135 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666666667777777777888888888888888877777766543
No 320
>PRK14151 heat shock protein GrpE; Provisional
Probab=32.33 E-value=3.1e+02 Score=23.21 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=28.5
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLK 332 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~ 332 (357)
.....++.+|..++.+++.+++++- .+..|+++|++...++..
T Consensus 20 ~~~~~l~~~i~~le~e~~el~d~~l----R~~Ae~eN~rkR~~kE~e 62 (176)
T PRK14151 20 AAGDDLTARVQELEEQLAAAKDQSL----RAAADLQNVRRRAEQDVE 62 (176)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4567788888888888887776653 344566666655444443
No 321
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=32.31 E-value=1.4e+02 Score=19.19 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=15.0
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQT 311 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~ 311 (357)
|..|..++..++.++..++..+..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777766665533
No 322
>KOG3614|consensus
Probab=32.04 E-value=1.7e+02 Score=32.66 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHH-cCccccCChhhhccccccc
Q psy18202 15 NDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVT-SHPVLSVNSHAIIFLTAKL 88 (357)
Q Consensus 15 sdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~-~hp~L~~~~~~~~FL~~~~ 88 (357)
+|=.|+.++...---.+.=|+|||.-++.. .=...+.++.++.. .++.-..+..+..||+.+.
T Consensus 1049 sd~iWkFQRY~limeyh~rP~LPPPfiils-----------Hi~l~~~r~~~~~~~~~~~~~~~~~~klfls~e~ 1112 (1381)
T KOG3614|consen 1049 SDQIWKFQRYSLIMEYHSRPALPPPFIILS-----------HIYLLLKRLSNSFRGDKRARDKDESLKLFLSKEE 1112 (1381)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcHHHH-----------HHHHHHHHHHcccCcccccchhhhhhHhhCCHHH
Confidence 566777766443222356688998887621 11223333333333 2233333577889998773
No 323
>KOG0979|consensus
Probab=31.30 E-value=7.3e+02 Score=27.16 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=19.0
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLR 317 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~ 317 (357)
+++..|+.++.++..++..+...+..+...+.
T Consensus 276 ~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~ 307 (1072)
T KOG0979|consen 276 DKKEELESEKKETRSKISQKQRELNEALAKVQ 307 (1072)
T ss_pred hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666555554443
No 324
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=31.24 E-value=4e+02 Score=24.15 Aligned_cols=10 Identities=30% Similarity=0.109 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy18202 244 ELQKKTAEKE 253 (357)
Q Consensus 244 ~l~kk~~~~~ 253 (357)
.+.+...+++
T Consensus 270 ~l~~~~~~l~ 279 (291)
T TIGR00996 270 LLVDYHPELE 279 (291)
T ss_pred HHHhcchhHH
Confidence 3333333333
No 325
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=31.23 E-value=1.1e+02 Score=20.68 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=24.1
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNH 315 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~ 315 (357)
++.|+-|+.+|.+++.+...++.+.......
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678889999999999888888876655443
No 326
>PRK14147 heat shock protein GrpE; Provisional
Probab=31.09 E-value=3.2e+02 Score=23.01 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=27.9
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKK 333 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~ 333 (357)
....++.+|+.++.+++.+++++-+ +..|+++|.+...++...
T Consensus 19 ~~~~l~~~l~~l~~e~~elkd~~lR----~~Ad~eN~rkR~~kE~e~ 61 (172)
T PRK14147 19 ETDPLKAEVESLRSEIALVKADALR----ERADLENQRKRIARDVEQ 61 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4456888888888888887777643 345666665554444433
No 327
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=31.04 E-value=3.9e+02 Score=23.98 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=10.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDE 307 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~ 307 (357)
.|+..|..-+.++...+..+..
T Consensus 192 ~kL~Dl~~~l~eA~~~~~ea~~ 213 (264)
T PF06008_consen 192 AKLQDLRDLLNEAQNKTREAED 213 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444443
No 328
>PRK15396 murein lipoprotein; Provisional
Probab=30.92 E-value=1.6e+02 Score=21.39 Aligned_cols=22 Identities=14% Similarity=0.459 Sum_probs=8.8
Q ss_pred HHHHHHhhHhHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEK 308 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~ 308 (357)
++++|..+++.+..+++++..+
T Consensus 26 kvd~LssqV~~L~~kvdql~~d 47 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSND 47 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333
No 329
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=30.50 E-value=55 Score=23.81 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCCCCCC
Q psy18202 17 FVWLHNKLVETLPSHIIP 34 (357)
Q Consensus 17 F~~L~~~L~~~~p~~~iP 34 (357)
.+.|.++|.+.|||..+|
T Consensus 32 ~E~l~~~L~~~yp~i~~P 49 (80)
T PF10264_consen 32 QETLREHLRKHYPGIAIP 49 (80)
T ss_pred HHHHHHHHHHhCCCCCCC
Confidence 578999999999997655
No 330
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=30.47 E-value=3.2e+02 Score=22.87 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=23.8
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 289 EKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRL 325 (357)
Q Consensus 289 ~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~ 325 (357)
..|++++.++.+++..--++...|...+-.+++..+.
T Consensus 50 ~eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~E 86 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEIKQIKDIMDKDFDKLHE 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4677777777766665555555666667677666553
No 331
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=30.12 E-value=4e+02 Score=23.74 Aligned_cols=108 Identities=15% Similarity=0.157 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---------HHHHHhhCCchhHHHHHHHHHHH-HHHHH
Q psy18202 126 SEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFA---------IVLNTWAGYEPQLSSVIRQVSKA-VDTTA 195 (357)
Q Consensus 126 ~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~---------~~~~~l~~~E~~l~~~l~~~~~~-~~~~~ 195 (357)
..+......++++...+..+.+.-..++..-.+++.++..+| .+|+.|+..+..+...+..-+.. +-.++
T Consensus 29 ~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~ 108 (234)
T cd07665 29 QEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLA 108 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677788888888888777777777777777666665554 44555555444443333222211 11222
Q ss_pred HHHHHH--hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q psy18202 196 SLHKNL--LIEPFHEHNSHPMKDYLMYIDAVKQVLARRDV 233 (357)
Q Consensus 196 ~~~~~~--~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~ 233 (357)
..+.++ +...+-..|.+=.+-+..+..+-.++-..|..
T Consensus 109 e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~ 148 (234)
T cd07665 109 ELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREA 148 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 22233345666666677777766666554443
No 332
>PRK14142 heat shock protein GrpE; Provisional
Probab=30.04 E-value=3.1e+02 Score=24.22 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=36.9
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
-...+..++++++...-.+..+++.+.+.+.+|.......-...+-.-|+.
T Consensus 41 ~~~~~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLp 91 (223)
T PRK14142 41 DAAHTEDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLG 91 (223)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566677788888888888899999999888888876655555544443
No 333
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.94 E-value=8.8e+02 Score=27.66 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q psy18202 60 LLDQFLRRV 68 (357)
Q Consensus 60 ~L~~fL~~i 68 (357)
.+..|+...
T Consensus 664 ~~~k~ie~a 672 (1311)
T TIGR00606 664 VYSQFITQL 672 (1311)
T ss_pred HHHHHHHHH
Confidence 444444444
No 334
>KOG4797|consensus
Probab=29.86 E-value=1.7e+02 Score=22.52 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=26.8
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLR-SDLERW 323 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~-~El~rF 323 (357)
++.++-|+.+|.++++....++.+...+...+- +.+..|
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql 105 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQL 105 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 377888888888888888888877666655554 334433
No 335
>PRK14148 heat shock protein GrpE; Provisional
Probab=29.53 E-value=3.7e+02 Score=23.21 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=26.9
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKK 333 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~ 333 (357)
..+..++.+|..++.+++.+++++- .+..|++.|.+...++...
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~l----R~~Ae~eN~rKR~~rE~e~ 83 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEAL----RAKAEMENIRKRAERDVSN 83 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776666653 3445666666554444433
No 336
>PF11953 DUF3470: Domain of unknown function (DUF3470); InterPro: IPR022569 This functionally uncharacterised domain is found in bacteria and is about 50 amino acids in length. It is found C-terminal to PF00037 from PFAM. It contains a single completely conserved residue N that may be functionally important. ; PDB: 1FRX_A 1GAO_A 1FRL_A 1AXQ_A 1FTC_B 1FDA_A 1A6L_A 1FDD_A 1F5B_A 1F5C_A ....
Probab=29.51 E-value=35 Score=21.64 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHhCCCC--CCCCCCCccccchhhhc
Q psy18202 15 NDFVWLHNKLVETLPSH--IIPPLPEKHSLLEHLNR 48 (357)
Q Consensus 15 sdF~~L~~~L~~~~p~~--~iPplP~K~~~~~~~~~ 48 (357)
.+|..|...|...+|.+ --||||+-....+..++
T Consensus 2 ~~f~elN~ela~~WP~It~kk~pl~dAd~w~~~~~K 37 (43)
T PF11953_consen 2 EHFIELNAELAKKWPNITEKKDPLPDADEWKGVPDK 37 (43)
T ss_dssp GHHHHHHHHHHTTS-BE-S-----TTHHHHTT-STG
T ss_pred cHHHHHHHHHHHhCCCcCccCCCCCCHHHHcCCccH
Confidence 47899999999999954 46899987766544344
No 337
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.42 E-value=6.5e+02 Score=26.87 Aligned_cols=13 Identities=8% Similarity=0.187 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy18202 328 KNDLKKILLKIAD 340 (357)
Q Consensus 328 ~~~l~~~l~~~a~ 340 (357)
..+.+++...+..
T Consensus 606 ~~~~~~~~~~l~~ 618 (782)
T PRK00409 606 AHELIEARKRLNK 618 (782)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 338
>KOG2264|consensus
Probab=29.33 E-value=6.3e+02 Score=25.76 Aligned_cols=6 Identities=0% Similarity=-0.047 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy18202 218 LMYIDA 223 (357)
Q Consensus 218 ~~~~~a 223 (357)
.+...+
T Consensus 85 ~RI~~s 90 (907)
T KOG2264|consen 85 KRILAS 90 (907)
T ss_pred HHHHHH
Confidence 333333
No 339
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.60 E-value=2.9e+02 Score=21.65 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=17.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNH 315 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~ 315 (357)
.|++.|+..++++++.+......++.+...
T Consensus 94 ~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~ 123 (129)
T cd00584 94 KKIEELTKQIEKLQKELAKLKDQINTLEAE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666665555555554443
No 340
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=28.42 E-value=4.9e+02 Score=24.29 Aligned_cols=53 Identities=8% Similarity=0.299 Sum_probs=34.2
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQI 343 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi 343 (357)
+..+|++.+..|..|..++..+-.-.+.|+..|. +-|..+|.-.|.++++..+
T Consensus 127 ~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I~-------kLRDeEL~PQL~eLi~Gl~ 179 (312)
T PF04782_consen 127 DSSKIDKTRASVKDLHTRIRVAIQSVDSISKRIE-------KLRDEELYPQLVELIQGLM 179 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888877777777766553 2234444555555544433
No 341
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.55 E-value=4.7e+02 Score=23.71 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=42.4
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~ 348 (357)
-+|..|..+|+.+....+ ++.+..++....|+..+.......-..++...+...+.-++.
T Consensus 120 vqIa~L~rqlq~lk~~qq---dEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~ 179 (258)
T PF15397_consen 120 VQIANLVRQLQQLKDSQQ---DELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQP 179 (258)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 467777777766655444 567777777778888888877777777777777776665554
No 342
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.53 E-value=2.7e+02 Score=23.45 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=17.8
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLE 326 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~ 326 (357)
.|++|+.+|+.+|.....++.-- .=...+..|+++|...
T Consensus 128 eI~~L~~~i~~le~~~~~~k~Lr-nKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 128 EIKQLEKEIQRLEEIQSKSKTLR-NKANWLESELERFQEQ 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34445555554444443333311 1112244677777654
No 343
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=27.44 E-value=1.3e+02 Score=20.57 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=19.8
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQ 310 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~ 310 (357)
..|+..||.++.+.|.+.+.++.+..
T Consensus 31 EqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888877776643
No 344
>KOG0976|consensus
Probab=27.38 E-value=7.9e+02 Score=26.29 Aligned_cols=102 Identities=14% Similarity=0.200 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhccCCCCCCCCCCCcccCCCcccccCCccHHHH
Q psy18202 213 PMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKE----QLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRL 288 (357)
Q Consensus 213 ~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~----kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki 288 (357)
.|.....++.+++..+..-+..-.+++..++.+..+-.++. .|... . +.....|
T Consensus 236 QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~E---l-------------------SqkeelV 293 (1265)
T KOG0976|consen 236 QLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDE---L-------------------SQKEELV 293 (1265)
T ss_pred HHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---h-------------------hHHHHHH
Confidence 34455556666666655554444455555555554444332 11111 0 0113778
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 289 EKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 289 ~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
..++.+++.+.+....+-.+.+..++.+..|......++ .+++..|++
T Consensus 294 k~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqk-adirc~LlE 341 (1265)
T KOG0976|consen 294 KELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQK-ADIRCALLE 341 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 888888888888888888888888888887777776664 566666554
No 345
>KOG2150|consensus
Probab=27.19 E-value=6.7e+02 Score=25.45 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=16.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDE 307 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~ 307 (357)
+-++=+...|++|+.+++..+.
T Consensus 122 d~~~wi~~~ideLe~q~d~~ea 143 (575)
T KOG2150|consen 122 DTMDWISNQIDELERQVDSFEA 143 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888888876665
No 346
>KOG3990|consensus
Probab=27.19 E-value=3.2e+02 Score=24.57 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 214 MKDYLMYIDAVKQVLARRDVIQAEHDMCGEEL 245 (357)
Q Consensus 214 l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l 245 (357)
+......+..++.+|...++.+.+-+..-.+|
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnL 258 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNL 258 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhcc
Confidence 34444556677777777777666544433333
No 347
>PRK14161 heat shock protein GrpE; Provisional
Probab=27.10 E-value=3.9e+02 Score=22.67 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=21.2
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDL 331 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l 331 (357)
+..++.+|++++.+++.+++++-+ +..|++.|.+...++.
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR----~~AefeN~rkR~~ke~ 60 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIR----TTAEIDNTRKRLEKAR 60 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 445555555555555555554422 3456666665544444
No 348
>PRK14150 heat shock protein GrpE; Provisional
Probab=26.71 E-value=3.8e+02 Score=23.07 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=26.3
Q ss_pred HHHHHHHhhHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKL----TSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKIL 335 (357)
Q Consensus 286 ~ki~~l~~~i~~l----e~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l 335 (357)
.++..|+.++.++ .+..-.+..+++.+.+.+.+|.......-...+-.-|
T Consensus 41 ~~i~~l~~~l~~~~~~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~l 94 (193)
T PRK14150 41 ARIAELEAQLAEAQAEERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANEL 94 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666554 3344455555666666666665555544443333333
No 349
>KOG2391|consensus
Probab=26.63 E-value=5.5e+02 Score=24.24 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=10.7
Q ss_pred HHHHHHHHHcCccccCChhh
Q psy18202 61 LDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 61 L~~fL~~i~~hp~L~~~~~~ 80 (357)
.+.-|+-|..-+.|+.-...
T Consensus 22 ~~~~l~lls~~~sL~P~t~t 41 (365)
T KOG2391|consen 22 RQDLLNLLSSFKSLRPKTDT 41 (365)
T ss_pred HHHHHHHHHhccccCcccce
Confidence 34455666666666554433
No 350
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.31 E-value=4.5e+02 Score=23.09 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy18202 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFA 167 (357)
Q Consensus 127 ~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~ 167 (357)
...++..+++++....+.+......+....+.++..+.+|+
T Consensus 10 d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~ 50 (215)
T cd07601 10 DALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYE 50 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888887774
No 351
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.23 E-value=3.4e+02 Score=24.36 Aligned_cols=30 Identities=13% Similarity=0.366 Sum_probs=16.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNH 315 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~ 315 (357)
+-+-+++.+|.+.+.+++.++.+...+.+.
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666666666666666655555444
No 352
>PRK09039 hypothetical protein; Validated
Probab=26.13 E-value=5.6e+02 Score=24.19 Aligned_cols=7 Identities=43% Similarity=0.904 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy18202 319 DLERWRL 325 (357)
Q Consensus 319 El~rF~~ 325 (357)
|+.+|..
T Consensus 191 ~l~~~~~ 197 (343)
T PRK09039 191 ELNRYRS 197 (343)
T ss_pred HHHHhHH
Confidence 4444433
No 353
>PF15400 TEX33: Testis-expressed sequence 33 protein family
Probab=25.96 E-value=40 Score=27.00 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=39.8
Q ss_pred CCcceeecchhhHHHHHHHHHHh-CCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHH
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVET-LPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRR 67 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~-~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~ 67 (357)
.+...+.++|+||..|--.|..+ ||| ||.--|..+ .+.|.++.+++..+.++.|-.|
T Consensus 48 ~~~~~~~s~~~dy~dLg~~~Rsnlf~G---~P~e~kSLm---k~SYTpdV~eksvrD~ehwhGR 105 (140)
T PF15400_consen 48 QSPSDISSIFSDYYDLGYNMRSNLFQG---APQETKSLM---KDSYTPDVIEKSVRDPEHWHGR 105 (140)
T ss_pred cCHHHhhccchhHHHhhHHHHHhhcCC---CcHHHHHHH---HhhcCHHHHHHHhcCHHHhhcc
Confidence 34445678999999998777764 444 445445544 3678999999998887776544
No 354
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.65 E-value=4.2e+02 Score=22.53 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=17.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLR 317 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~ 317 (357)
.+|..|+.++..+..++..+-..+..+...+.
T Consensus 29 ~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~ 60 (188)
T PF10018_consen 29 ARIQQLRAEIEELDEQIRDILKQLKEARKELR 60 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666555555555555544444443
No 355
>PRK14145 heat shock protein GrpE; Provisional
Probab=25.16 E-value=4.5e+02 Score=22.73 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=26.4
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDL 331 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l 331 (357)
..+..|+.++.+++.++..+++++-+ +..|+++|.+.-.++.
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR----~~AEfeN~rkR~~kE~ 86 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQR----LKAEFENYRKRTEKEK 86 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 56777777777777777766666633 3456666655444443
No 356
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=24.94 E-value=5e+02 Score=23.15 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy18202 157 KDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPF 206 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~ 206 (357)
.+++..+..++..... |..|.+ |..++..+-.-.+.++..+.. +++.+
T Consensus 36 ~~YaK~L~kLskk~~~-g~~E~GTl~~sw~~~~~E~e~~a~~H~~-la~~L 84 (240)
T cd07672 36 EKYGKELLNLSKKKPC-GQTEINTLKRSLDVFKQQIDNVGQSHIQ-LAQTL 84 (240)
T ss_pred HHHHHHHHHHHHhcCC-CCcccchHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4455555555553311 444554 777777777777777776655 44433
No 357
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=24.88 E-value=1.7e+02 Score=18.75 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=14.6
Q ss_pred HHHHHHHhhHhHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEIC 305 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~ 305 (357)
.||+.+..+|.+|+...+.+
T Consensus 19 qkiedid~qIaeLe~KR~~L 38 (46)
T PF08946_consen 19 QKIEDIDEQIAELEAKRQRL 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 67888888888887665544
No 358
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=24.82 E-value=5.1e+02 Score=23.19 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18202 221 IDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLT 256 (357)
Q Consensus 221 ~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~ 256 (357)
+.-|.++=..|...-..++.....+.........|.
T Consensus 127 ~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Le 162 (239)
T PF05276_consen 127 TQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLE 162 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566565555555554544444444443
No 359
>KOG4848|consensus
Probab=24.76 E-value=4.5e+02 Score=22.58 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 317 RSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 317 ~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
..|.++|. .|..++...|..|-+.-..|+.+..+-|.
T Consensus 124 ~~e~~k~~-~Re~~iak~m~K~pq~~a~~~a~~~k~e~ 160 (225)
T KOG4848|consen 124 TKEPEKFT-FREAEIAKNMKKYPQTLAKYEASLVKQEQ 160 (225)
T ss_pred HhhHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Confidence 37888886 78999999999999999999999988884
No 360
>PRK11637 AmiB activator; Provisional
Probab=24.56 E-value=6.6e+02 Score=24.42 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=7.6
Q ss_pred HHHHHhhHhHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDE 307 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~ 307 (357)
+.+|+.++.+.+.++..++.
T Consensus 221 l~~L~~~~~~~~~~l~~l~~ 240 (428)
T PRK11637 221 LTGLESSLQKDQQQLSELRA 240 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 361
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.47 E-value=5.2e+02 Score=23.18 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=31.9
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 290 KLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRS 350 (357)
Q Consensus 290 ~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~ 350 (357)
+++.++++.... ++.+++++...-..++.. -..++-+....|++.-|.+.+..+
T Consensus 188 ~~e~kve~a~~~---~k~e~~Rf~~~k~~D~k~----~~~~yae~~i~~~~~~~~~We~fl 241 (243)
T cd07666 188 KLEDKVECANNA---LKADWERWKQNMQTDLRS----AFTDMAENNISYYEECLATWESFL 241 (243)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444433 447777777776665543 246667777777777677665543
No 362
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.13 E-value=3.7e+02 Score=21.41 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=15.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHL 316 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~ 316 (357)
++++.|+..++.++..+....+.++.+...+
T Consensus 101 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 101 KRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544444443
No 363
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=23.71 E-value=82 Score=24.25 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLR 317 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~ 317 (357)
+++.+++.+|..|..+.+.++++.+.+++.+.
T Consensus 45 ~~~~ege~~~qkL~eqteeLK~kvqe~sk~i~ 76 (106)
T PF12443_consen 45 DKIREGEQMIQKLGEQTEELKDKVQEFSKRIE 76 (106)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 67888888888888888888888888876654
No 364
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.62 E-value=8.3e+02 Score=25.28 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhCC
Q psy18202 157 KDYVSEAHQFAIVLNTWAGY 176 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l~~~ 176 (357)
..++..+..|-.+++.|+..
T Consensus 115 ~gl~~~l~~ff~al~~ls~~ 134 (627)
T PRK06665 115 QSLRTRLDDFWDSWQDLSNY 134 (627)
T ss_pred CcHHHHHHHHHHHHHHHHhC
Confidence 46788888888888888754
No 365
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.58 E-value=7.9e+02 Score=25.01 Aligned_cols=102 Identities=9% Similarity=0.134 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-----------hCCchhHHHHHHHHHHHHHHHH
Q psy18202 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTW-----------AGYEPQLSSVIRQVSKAVDTTA 195 (357)
Q Consensus 127 ~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l-----------~~~E~~l~~~l~~~~~~~~~~~ 195 (357)
.+......++..+..+..+...+..|......-...+..+...+..+ |...+.|-..|..+-.-|..+.
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~ 185 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFV 185 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666655544444444444444332 1222224455555555555555
Q ss_pred HHHHH---HhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy18202 196 SLHKN---LLIEPFHEHNSHPMKDYLMYIDAVKQVL 228 (357)
Q Consensus 196 ~~~~~---~~~~~~~~~l~~~l~~~~~~~~a~k~~l 228 (357)
.+... .-+......+...+...-.++..+..++
T Consensus 186 ~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~ 221 (569)
T PRK04778 186 ELTESGDYVEAREILDQLEEELAALEQIMEEIPELL 221 (569)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322 0111222344444444444444444444
No 366
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.50 E-value=5.6e+02 Score=23.23 Aligned_cols=142 Identities=12% Similarity=0.113 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYI-DA---VKQVLARRDVIQAEHDMCGEELQKKTAEKEQL 255 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~a---~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL 255 (357)
+..++..+-...+.++..+.. ++..+. .+...|..|.... .. .++.+..=..++..++...+.+++.+...+..
T Consensus 65 ~~~~~~~~~~e~e~~a~~H~~-la~~L~-~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~~~~~~~~~~KaK~~Y~~~ 142 (269)
T cd07673 65 FAPVWDVFKTSTEKLANCHLE-LVRKLQ-ELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNAK 142 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666676666666666666554 444332 2233333333211 11 11212222223444555556666666554432
Q ss_pred hccCCCCCCCCCCCcccCCCcccccCCccHHHH---HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 256 TNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRL---EKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLK 332 (357)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki---~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~ 332 (357)
-.. .+++ .....+|+.++.++..+.+.+....+.+...-.+|. .......
T Consensus 143 c~e--------------------------~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~-~~m~~~~ 195 (269)
T cd07673 143 CLE--------------------------QERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKADFE-QKMTETA 195 (269)
T ss_pred HHH--------------------------HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 211 1222 223567777777788888887776666666666663 3345555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18202 333 KILLKIADQQIAYYQQRS 350 (357)
Q Consensus 333 ~~l~~~a~~qi~~~~~~~ 350 (357)
+.++++=+..|.+.+..+
T Consensus 196 ~~~Q~~Ee~Ri~~~k~~l 213 (269)
T cd07673 196 QKFQDIEETHLIRIKEII 213 (269)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555666655443
No 367
>PHA02047 phage lambda Rz1-like protein
Probab=23.25 E-value=3.3e+02 Score=20.53 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=22.3
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWR 324 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~ 324 (357)
.+.++.+|...++.+..++.+-+.-+..++.+++...
T Consensus 43 LE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 43 LEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4445555666666666666666666666666665443
No 368
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.22 E-value=2.5e+02 Score=19.54 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=7.4
Q ss_pred HHHHHhhHhHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDE 307 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~ 307 (357)
+..++.++++++.+.+.++.
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 369
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=23.12 E-value=1e+03 Score=26.22 Aligned_cols=6 Identities=50% Similarity=0.368 Sum_probs=2.7
Q ss_pred ceeecc
Q psy18202 8 CIVRRR 13 (357)
Q Consensus 8 ~~V~RR 13 (357)
+.|.||
T Consensus 93 ~~i~r~ 98 (1164)
T TIGR02169 93 LEVVRR 98 (1164)
T ss_pred EEEEEE
Confidence 444443
No 370
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.56 E-value=4.2e+02 Score=22.94 Aligned_cols=25 Identities=8% Similarity=0.376 Sum_probs=20.2
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHH
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEK 308 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~ 308 (357)
|++|+++++...++.+++.++|++.
T Consensus 70 D~ekm~~~qk~m~efq~e~~eA~~~ 94 (201)
T COG1422 70 DQEKMKELQKMMKEFQKEFREAQES 94 (201)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688888888888888888888774
No 371
>PF13871 Helicase_C_4: Helicase_C-like
Probab=22.54 E-value=94 Score=28.50 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCccccCChhhhccccccc
Q psy18202 60 LLDQFLRRVTSHPVLSVNSHAIIFLTAKL 88 (357)
Q Consensus 60 ~L~~fL~~i~~hp~L~~~~~~~~FL~~~~ 88 (357)
.+.+|||||+.-|+=.+.-.|..|...=+
T Consensus 232 ~V~kFLNRLLGL~V~~Qn~LF~yF~~~l~ 260 (278)
T PF13871_consen 232 SVPKFLNRLLGLPVEMQNALFKYFTDTLD 260 (278)
T ss_pred cHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999876543
No 372
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=22.32 E-value=5.9e+02 Score=23.05 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Q psy18202 146 EKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTA 195 (357)
Q Consensus 146 ~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~ 195 (357)
.+.+..+..+..++..++..+......++..-++|...+..+......+.
T Consensus 41 ~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~ 90 (267)
T PF11887_consen 41 NTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLV 90 (267)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33334444444455555556666666666565555555555444444443
No 373
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.28 E-value=3.9e+02 Score=20.96 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=13.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 211 SHPMKDYLMYIDAVKQVLARRDVIQA 236 (357)
Q Consensus 211 ~~~l~~~~~~~~a~k~~l~~R~~~~~ 236 (357)
-..+..|..+-..+..+...|..+..
T Consensus 10 q~~~~~~q~lq~~l~~~~~q~~~le~ 35 (121)
T PRK09343 10 QAQLAQLQQLQQQLERLLQQKSQIDL 35 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555443
No 374
>PF00157 Pou: Pou domain - N-terminal to homeobox domain; InterPro: IPR000327 POU proteins are eukaryotic transcription factors containing a bipartite DNA binding domain referred to as the POU domain. The acronym POU (pronounced 'pow') is derived from the names of three mammalian transcription factors, the pituitary-specific Pit-1, the octamer-binding proteins Oct-1 and Oct-2, and the neural Unc-86 from Caenorhabditis elegans. POU domain genes have been identified in diverse organisms including nematodes, flies, amphibians, fish and mammals but have not been yet identified in plants and fungi. The various members of the POU family have a wide variety of functions, all of which are related to the function of the neuroendocrine system [] and the development of an organism []. Some other genes are also regulated, including those for immunoglobulin light and heavy chains (Oct-2) [, ], and trophic hormone genes, such as those for prolactin and growth hormone (Pit-1). The POU domain is a bipartite domain composed of two subunits separated by a non-conserved region of 15-55 aa. The N-terminal subunit is known as the POU-specific (POUs) domain (IPR000327 from INTERPRO), while the C-terminal subunit is a homeobox domain (IPR007103 from INTERPRO). 3D structures of complexes including both POU subdomains bound to DNA are available. Both subdomains contain the structural motif 'helix-turn-helix', which directly associates with the two components of bipartite DNA binding sites, and both are required for high affinity sequence-specific DNA-binding. The domain may also be involved in protein-protein interactions []. The subdomains are connected by a flexible linker [, , ]. In proteins a POU-specific domain is always accompanied by a homeodomain. Despite of the lack of sequence homology, 3D structure of POUs is similar to 3D structure of bacteriophage lambda repressor and other members of HTH_3 family [, ]. This entry represents the POU-specific subunit of the POU domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3D1N_O 1AU7_A 3L1P_A 2XSD_C 1O4X_A 1HF0_B 1GT0_C 1POU_A 1CQT_B 1E3O_C ....
Probab=22.25 E-value=2.4e+02 Score=20.28 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCc
Q psy18202 142 ISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYE 177 (357)
Q Consensus 142 l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E 177 (357)
+..+...+..+..+|..++-+..++|.++..+.+.+
T Consensus 6 ~~ele~Fa~~fk~rRi~LG~TQ~dVg~al~~~~G~~ 41 (75)
T PF00157_consen 6 LKELEQFAKEFKQRRIKLGYTQADVGAALGRLYGKE 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHHHhhhhcccCHHHHhHHHHHhcCcc
Confidence 456677777788888888888899999998887765
No 375
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.23 E-value=6.5e+02 Score=23.49 Aligned_cols=37 Identities=16% Similarity=0.394 Sum_probs=18.6
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERW 323 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF 323 (357)
+|+....++.++..++..++...+.+......|+.+.
T Consensus 240 ~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~L 276 (312)
T smart00787 240 KIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKL 276 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4455555555555555555555444444444444444
No 376
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.98 E-value=4.7e+02 Score=21.80 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=18.3
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHL 316 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~ 316 (357)
.+++.|+.++..++......+++|..+-..|
T Consensus 118 ~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 118 KRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665554444
No 377
>PRK11637 AmiB activator; Provisional
Probab=21.87 E-value=7.4e+02 Score=24.05 Aligned_cols=20 Identities=35% Similarity=0.300 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy18202 231 RDVIQAEHDMCGEELQKKTA 250 (357)
Q Consensus 231 R~~~~~~~~~~~~~l~kk~~ 250 (357)
+..++.+|......|..++.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~ 187 (428)
T PRK11637 168 RQETIAELKQTREELAAQKA 187 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333
No 378
>PRK15396 murein lipoprotein; Provisional
Probab=21.85 E-value=3.2e+02 Score=19.79 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=17.9
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLR 317 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~ 317 (357)
.+++++..++..+...+..++++-.+.+..+-
T Consensus 39 ~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 39 AKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 379
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=21.67 E-value=7.8e+02 Score=24.22 Aligned_cols=86 Identities=22% Similarity=0.238 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHH------HHHH
Q psy18202 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQ------TANN 314 (357)
Q Consensus 241 ~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~------~i~~ 314 (357)
.+..|.+.+.++..|....+.. .-+|..++.+|..+++++...+.++. ..+
T Consensus 291 Le~qLa~~~aeL~~L~~~~~p~----------------------sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la- 347 (434)
T PRK15178 291 FETQLAEAKAEYAQLMVNGLDQ----------------------NPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSS- 347 (434)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC----------------------CCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchh-
Confidence 4556777777777775431111 12455666666666666665555542 111
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 315 HLRSDLERWRL---EKKNDLKKILLKIADQQIAYYQQR 349 (357)
Q Consensus 315 ~~~~El~rF~~---~k~~~l~~~l~~~a~~qi~~~~~~ 349 (357)
....|+++-.- .-...+..++..+=...++..++.
T Consensus 348 ~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~ 385 (434)
T PRK15178 348 ESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRER 385 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 12233333322 234556666666666666665553
No 380
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.62 E-value=3.7e+02 Score=20.51 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=25.4
Q ss_pred ccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q psy18202 283 TSEDRLEKLSTAIPKLTSQLEICDEKLQTANNH 315 (357)
Q Consensus 283 ~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~ 315 (357)
|+++-+.+|+..|.+++.++..+...+.-++..
T Consensus 62 Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 62 PTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456778888888888888888888887777654
No 381
>KOG0971|consensus
Probab=21.57 E-value=1.1e+03 Score=25.77 Aligned_cols=37 Identities=30% Similarity=0.492 Sum_probs=21.3
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNH----LRSDLERW 323 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~----~~~El~rF 323 (357)
+||..|+.+|.++|. .+.+.+.+...+.. +++||+.-
T Consensus 462 ekVklLeetv~dlEa-lee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 462 EKVKLLEETVGDLEA-LEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888887765 33344444333332 34555554
No 382
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=21.38 E-value=3.9e+02 Score=20.65 Aligned_cols=46 Identities=22% Similarity=0.435 Sum_probs=31.4
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLK 332 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~ 332 (357)
.|++.|...+..+|..+..++.+...+ +-+..++.||+..=.-.+.
T Consensus 40 rRlDElV~Rv~~lEs~~~~lk~dVsem-KpVT~dV~rwklmG~GaLg 85 (112)
T PF07439_consen 40 RRLDELVERVTTLESSVSTLKADVSEM-KPVTDDVKRWKLMGMGALG 85 (112)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhHHhc-cchHHHHHHHHHhccchhh
Confidence 788888888888888888777765433 3345678888765443333
No 383
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.00 E-value=1e+03 Score=25.39 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 298 LTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 298 le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
++.+.+.++.+.+.+-....+|....-.....+...++.++=
T Consensus 553 l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 553 LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444445555555555555555555555554
No 384
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=20.96 E-value=2e+02 Score=20.40 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=30.5
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 289 EKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILL 336 (357)
Q Consensus 289 ~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~ 336 (357)
.+++..|.+.+.++......++.-..+++.|++..+.. ..++...-.
T Consensus 13 ~~lk~~L~~I~~~~~~i~~~ld~~~~ClL~e~e~i~~~-f~~~q~~As 59 (70)
T PF10372_consen 13 EQLKQYLEQIEEEISQIIQTLDEDDCCLLCEFEEIREK-FLDIQTLAS 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-TT--GGGGHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceechhHHHHHHH-HHHHHHHHH
Confidence 45677777778888877778888888888888887643 444444433
No 385
>PRK14150 heat shock protein GrpE; Provisional
Probab=20.83 E-value=5.4e+02 Score=22.10 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=29.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKK 333 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~ 333 (357)
+....++.+|.+++.++..++.++..---.+..|++.|++...++...
T Consensus 34 ~~~~~~~~~i~~l~~~l~~~~~~~kd~~lR~~AefeN~rkR~~kE~~~ 81 (193)
T PRK14150 34 DELDEADARIAELEAQLAEAQAEERDSVLRARAEVENIRRRAEQDVEK 81 (193)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888877766543333334557888887766555544
No 386
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.50 E-value=8e+02 Score=23.89 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=18.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTA 312 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i 312 (357)
+++..+..+|.+++.++..++.++..+
T Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 76 KELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777666665544
No 387
>KOG0161|consensus
Probab=20.43 E-value=1.5e+03 Score=27.11 Aligned_cols=178 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH--Hhhh
Q psy18202 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN--LLIE 204 (357)
Q Consensus 127 ~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~--~~~~ 204 (357)
+.......+..+...+..+......+.+.++.+-..+.++...+...-.--.++......+-..++.+...++. ....
T Consensus 958 Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~ 1037 (1930)
T KOG0161|consen 958 EKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRM 1037 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCcc
Q psy18202 205 PFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTS 284 (357)
Q Consensus 205 ~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 284 (357)
..+...-..-.+......++.++-..++.+..++......+..-..+.+.+...
T Consensus 1038 e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~-------------------------- 1091 (1930)
T KOG0161|consen 1038 ELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAE-------------------------- 1091 (1930)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--------------------------
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKI 334 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~ 334 (357)
+.+++..|.+++..+..+.+++ ........++.+=..+-..++...
T Consensus 1092 ---~~~l~k~i~eL~~~i~el~e~l-e~er~~r~K~ek~r~dL~~ele~l 1137 (1930)
T KOG0161|consen 1092 ---VAQLQKQIKELEARIKELEEEL-EAERASRAKAERQRRDLSEELEEL 1137 (1930)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
No 388
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=20.33 E-value=4.4e+02 Score=20.81 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=14.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANN 314 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~ 314 (357)
+|++-|+.+|.-+++..+....+++.+..
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444433
No 389
>PHA00489 scaffolding protein
Probab=20.13 E-value=3.7e+02 Score=19.91 Aligned_cols=50 Identities=26% Similarity=0.210 Sum_probs=31.5
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 209 HNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
+++++=-....-..++..+-..--....+|+.....++|-.++++.|..+
T Consensus 14 kL~dpEl~~sErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~DLivs 63 (101)
T PHA00489 14 KLGDPELTESERTEALQQLRESYGSFHSEYEELTEALEKLTAEKEDLIVS 63 (101)
T ss_pred HcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 44444444444455554444444455667888888888888888887765
No 390
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.02 E-value=7.4e+02 Score=23.35 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 216 DYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 216 ~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
+|..-...-+++|+.|......++.-.++|.-.-..+=+|...
T Consensus 184 eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~ 226 (401)
T PF06785_consen 184 EYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESD 226 (401)
T ss_pred HhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333344445778888777777777777766555555455443
Done!