Query psy18202
Match_columns 357
No_of_seqs 161 out of 1381
Neff 8.9
Searched_HMMs 29240
Date Sat Aug 17 01:28:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dyt_A Sorting nexin-9; 3-heli 100.0 2.3E-45 8E-50 347.2 24.7 291 6-355 50-358 (366)
2 4akv_A Sorting nexin-33; trans 100.0 9.9E-45 3.4E-49 344.2 26.1 291 6-355 71-378 (386)
3 3hpc_X SNX5 protein; sprting n 99.9 3.5E-26 1.2E-30 189.2 6.7 96 1-97 37-159 (161)
4 3iq2_A Sorting nexin-7; SNX7, 99.9 1.4E-25 4.7E-30 182.4 8.5 88 1-88 38-125 (138)
5 1ocs_A Sorting nexin GRD19; so 99.9 4.3E-24 1.5E-28 178.4 6.4 86 1-89 69-160 (162)
6 2i4k_A Sorting nexin-1, SNX1; 99.9 2.8E-23 9.6E-28 167.3 6.9 87 1-87 33-127 (128)
7 2csk_A Sorting nexin 12; SNX12 99.9 2E-23 7E-28 171.7 5.8 88 1-89 40-132 (146)
8 3lui_A Sorting nexin-17, SNX17 99.9 1.1E-22 3.9E-27 160.2 4.6 79 6-89 32-110 (115)
9 3p0c_A Nischarin; structural g 99.8 5E-21 1.7E-25 153.8 5.5 82 5-91 47-128 (130)
10 1kmd_A VAM7P, vacuolar morphog 99.8 8.1E-21 2.8E-25 150.1 6.1 83 6-89 27-116 (117)
11 1xte_A Serine/threonine-protei 99.8 4.4E-20 1.5E-24 152.9 6.5 79 5-88 36-115 (154)
12 1h6h_A Neutrophil cytosol fact 99.8 1.8E-19 6.1E-24 147.7 6.1 83 5-92 49-140 (143)
13 2v14_A Kinesin-like motor prot 99.8 2E-19 6.8E-24 145.3 5.6 73 5-81 34-107 (134)
14 2ett_A Sorting nexin-22; PX do 99.8 3.1E-19 1.1E-23 142.7 5.2 75 5-88 43-117 (128)
15 2ar5_A Phosphoinositide 3-kina 99.8 6.8E-19 2.3E-23 139.7 6.7 78 6-87 36-115 (121)
16 4az9_A Sorting nexin-24; prote 99.7 4.1E-18 1.4E-22 136.4 6.4 76 4-88 51-126 (129)
17 1kq6_A NCF-1, P47PHOX, neutrop 99.7 1.3E-17 4.3E-22 136.1 7.2 82 5-92 35-126 (141)
18 2iwl_X Phosphatidylinositol-4- 99.7 2.6E-18 8.8E-23 140.0 2.9 82 6-91 51-134 (140)
19 2v6v_A BUD emergence protein 1 99.6 5.3E-16 1.8E-20 127.9 8.0 83 5-93 44-141 (156)
20 2fic_A Bridging integrator 1; 99.6 9E-13 3.1E-17 118.0 25.7 193 122-354 48-240 (251)
21 1uru_A Amphiphysin; endocytosi 99.5 1.5E-12 5.3E-17 115.9 22.6 195 123-355 34-228 (244)
22 2l73_A NADPH oxidase organizer 99.5 5.3E-15 1.8E-19 121.0 5.8 84 5-92 38-132 (149)
23 2wwe_A Phosphoinositide-3-kina 99.4 4.2E-13 1.4E-17 104.1 4.6 76 5-86 50-126 (127)
24 2dyb_A Neutrophil cytosol fact 99.2 6.3E-12 2.2E-16 117.4 6.4 79 5-88 52-139 (341)
25 4avm_A Bridging integrator 2; 99.2 3.6E-09 1.2E-13 93.4 23.4 194 121-354 28-221 (237)
26 4a3a_A Amphiphysin; structural 99.1 1.2E-08 4.2E-13 90.2 22.4 193 121-353 33-225 (243)
27 1zww_A SH3-containing GRB2-lik 98.8 1.4E-06 4.7E-11 77.8 21.8 182 122-354 27-234 (256)
28 2z0v_A SH3-containing GRB2-lik 98.6 8.1E-06 2.8E-10 72.0 20.7 178 122-354 11-218 (240)
29 2q12_A DIP13 alpha, DCC-intera 98.5 5.1E-05 1.7E-09 67.9 24.9 187 130-354 25-219 (265)
30 2q13_A DCC-interacting protein 98.4 0.00022 7.6E-09 67.3 26.9 187 130-354 25-219 (385)
31 1i4d_A Arfaptin 2, partner of 98.3 0.001 3.5E-08 57.2 26.0 195 122-353 3-199 (224)
32 4h8s_A DCC-interacting protein 97.9 0.016 5.4E-07 54.9 27.1 187 130-354 48-242 (407)
33 2ykt_A Brain-specific angiogen 97.4 0.061 2.1E-06 47.3 27.6 121 135-258 24-150 (253)
34 3plt_A Sphingolipid long chain 97.0 0.13 4.4E-06 44.1 24.8 143 142-323 25-168 (234)
35 2d1l_A Metastasis suppressor p 97.0 0.16 5.3E-06 44.5 22.9 193 140-357 31-237 (253)
36 3haj_A Human pacsin2 F-BAR; pa 97.0 0.3 1E-05 47.2 27.9 165 154-341 50-254 (486)
37 4dyl_A Tyrosine-protein kinase 96.6 0.46 1.6E-05 44.7 22.6 142 180-342 70-235 (406)
38 2v0o_A FCHO2, FCH domain only 96.6 0.34 1.2E-05 42.8 27.0 199 125-345 17-229 (276)
39 2efl_A Formin-binding protein 96.6 0.37 1.3E-05 43.2 28.2 144 180-346 74-247 (305)
40 3abh_A Pacsin2, protein kinase 96.5 0.45 1.5E-05 42.9 28.0 62 157-219 60-124 (312)
41 3aco_A Pacsin2, protein kinase 96.5 0.5 1.7E-05 43.4 24.4 62 157-219 60-124 (350)
42 2efk_A CDC42-interacting prote 96.4 0.49 1.7E-05 42.3 28.8 168 157-347 38-241 (301)
43 3i2w_A Syndapin, LD46328P; EFC 96.1 0.68 2.3E-05 41.2 28.4 184 157-341 39-239 (290)
44 2x3v_A Syndapin I, protein kin 96.0 0.93 3.2E-05 41.3 30.4 62 157-219 51-115 (337)
45 3ok8_A Brain-specific angiogen 95.3 1.1 3.9E-05 38.0 26.2 189 135-354 22-219 (222)
46 3m3w_A Pacsin3, protein kinase 94.4 2.9 9.8E-05 37.8 30.3 176 157-340 51-251 (320)
47 3g9g_A Suppressor of yeast pro 93.8 3.5 0.00012 36.7 19.1 122 180-350 120-241 (287)
48 3iv1_A Tumor susceptibility ge 80.2 11 0.00038 26.2 7.7 37 220-258 4-40 (78)
49 3plt_A Sphingolipid long chain 78.7 30 0.001 29.5 21.0 154 144-350 20-181 (234)
50 3lay_A Zinc resistance-associa 77.8 23 0.00078 28.9 10.2 45 242-308 91-135 (175)
51 3haj_A Human pacsin2 F-BAR; pa 76.8 53 0.0018 31.3 24.4 11 137-147 54-64 (486)
52 3vkg_A Dynein heavy chain, cyt 76.3 1.4E+02 0.0046 35.8 26.5 47 289-336 2052-2101(3245)
53 2wq1_A General control protein 75.2 6.2 0.00021 22.3 4.2 24 288-311 2-25 (33)
54 3oja_B Anopheles plasmodium-re 74.6 32 0.0011 33.5 12.5 14 295-308 553-566 (597)
55 1kd8_B GABH BLL, GCN4 acid bas 69.6 11 0.00039 21.6 4.5 22 288-309 3-24 (36)
56 2z5i_A TM, general control pro 69.1 12 0.00039 23.9 5.1 33 286-318 12-44 (52)
57 1kd8_A GABH AIV, GCN4 acid bas 68.3 8.3 0.00028 22.2 3.7 24 288-311 3-26 (36)
58 3ogl_Q JAZ1 incomplete degron 66.6 3.7 0.00013 20.8 1.8 12 56-67 5-16 (21)
59 3c3f_A Alpha/beta peptide with 64.5 14 0.00049 20.9 4.2 25 287-311 2-26 (34)
60 1jcd_A Major outer membrane li 57.9 26 0.00087 22.3 5.1 27 287-313 19-45 (52)
61 3c3g_A Alpha/beta peptide with 57.6 23 0.00078 20.0 4.2 23 288-310 2-24 (33)
62 3aco_A Pacsin2, protein kinase 57.6 1.1E+02 0.0036 27.5 22.1 56 286-341 192-261 (350)
63 2oxj_A Hybrid alpha/beta pepti 57.3 23 0.00078 20.1 4.2 23 287-309 2-24 (34)
64 3m48_A General control protein 57.3 14 0.00048 20.9 3.3 19 286-304 7-25 (33)
65 3ogk_Q JAZ1 incomplete degron 57.1 3.7 0.00012 21.2 0.8 11 57-67 1-11 (22)
66 2x3v_A Syndapin I, protein kin 56.3 1.1E+02 0.0037 27.2 25.5 56 286-341 183-252 (337)
67 4ani_A Protein GRPE; chaperone 55.8 51 0.0017 27.7 8.2 51 286-336 66-116 (213)
68 3qne_A Seryl-tRNA synthetase, 55.6 94 0.0032 29.6 11.0 71 221-312 32-104 (485)
69 3tul_A Cell invasion protein S 55.4 72 0.0025 24.9 12.4 49 208-256 48-96 (158)
70 3nmd_A CGMP dependent protein 55.4 46 0.0016 22.7 6.9 21 287-307 41-61 (72)
71 2l5g_B Putative uncharacterize 55.3 32 0.0011 20.7 5.3 30 286-315 9-38 (42)
72 2bni_A General control protein 53.4 17 0.00058 20.7 3.2 26 287-312 2-27 (34)
73 2dq0_A Seryl-tRNA synthetase; 52.7 1.2E+02 0.004 28.7 11.2 70 221-311 30-101 (455)
74 3mq9_A Bone marrow stromal ant 52.3 1.2E+02 0.0041 28.4 11.4 18 10-27 139-156 (471)
75 2r2v_A GCN4 leucine zipper; co 51.5 32 0.0011 19.6 4.2 22 288-309 3-24 (34)
76 3ghg_A Fibrinogen alpha chain; 50.6 1.2E+02 0.004 29.1 10.4 12 131-142 51-62 (562)
77 2hy6_A General control protein 50.4 31 0.0011 19.6 4.0 20 288-307 3-22 (34)
78 2d1l_A Metastasis suppressor p 49.9 1.3E+02 0.0043 26.0 21.1 64 121-184 26-96 (253)
79 1x79_B RAB GTPase binding effe 48.9 80 0.0027 23.5 9.6 43 286-328 45-87 (112)
80 1uo4_A General control protein 48.3 26 0.0009 19.9 3.5 18 286-303 8-25 (34)
81 2yy0_A C-MYC-binding protein; 46.6 43 0.0015 21.3 4.9 33 284-316 17-49 (53)
82 2dq3_A Seryl-tRNA synthetase; 44.5 1.1E+02 0.0039 28.4 9.6 73 221-312 29-101 (425)
83 3na7_A HP0958; flagellar bioge 43.8 1.5E+02 0.0052 25.3 19.1 31 294-324 133-163 (256)
84 1t3j_A Mitofusin 1; coiled coi 40.8 1E+02 0.0034 22.3 6.8 39 287-326 55-93 (96)
85 3ghg_A Fibrinogen alpha chain; 39.7 2.6E+02 0.0089 26.7 12.0 20 128-147 66-85 (562)
86 2akf_A Coronin-1A; coiled coil 38.6 42 0.0015 18.3 3.2 21 292-312 5-25 (32)
87 1s28_A ORF1; type III chaperon 38.2 19 0.00064 27.5 2.4 23 15-40 5-27 (132)
88 2q13_A DCC-interacting protein 38.1 2.3E+02 0.0078 25.6 12.3 43 125-167 27-69 (385)
89 3mud_A DNA repair protein XRCC 37.7 86 0.0029 25.3 6.4 32 286-317 135-166 (175)
90 2oqq_A Transcription factor HY 35.6 72 0.0025 19.1 5.3 25 286-310 10-34 (42)
91 2lf0_A Uncharacterized protein 35.2 94 0.0032 23.3 5.8 49 236-308 10-58 (123)
92 2lq4_p Lysophosphatidic acid r 34.2 15 0.00052 24.0 1.2 14 344-357 23-36 (80)
93 2p2u_A HOST-nuclease inhibitor 34.1 1.8E+02 0.0062 23.3 8.7 58 286-344 16-77 (171)
94 4ani_A Protein GRPE; chaperone 33.8 1.8E+02 0.0062 24.3 8.2 44 286-333 59-102 (213)
95 3uun_A Dystrophin; triple heli 32.5 1.4E+02 0.0047 21.4 11.5 38 220-257 34-71 (119)
96 3qwe_A GMIP, GEM-interacting p 30.8 2.7E+02 0.0092 24.3 25.0 44 209-252 98-142 (279)
97 3caz_A BAR protein; thermo-aci 30.0 2.2E+02 0.0077 23.1 24.2 26 208-233 101-126 (294)
98 1g6u_A Domain swapped dimer; d 28.5 94 0.0032 18.2 6.6 26 285-310 19-44 (48)
99 1jcd_A Major outer membrane li 28.4 1.2E+02 0.0039 19.3 6.1 28 286-313 4-31 (52)
100 1i84_S Smooth muscle myosin he 28.0 2.2E+02 0.0075 30.4 9.6 16 7-22 719-734 (1184)
101 3uul_A Utrophin; spectrin repe 27.6 1.7E+02 0.0058 20.9 11.0 38 220-257 34-71 (118)
102 1wle_A Seryl-tRNA synthetase; 27.3 4.1E+02 0.014 25.3 11.6 25 223-247 71-95 (501)
103 1ic2_A Tropomyosin alpha chain 27.2 1.5E+02 0.0053 20.3 10.4 13 293-305 48-60 (81)
104 4hpq_C ATG17, KLTH0D15642P; au 27.2 3.8E+02 0.013 24.8 24.4 25 174-198 200-224 (413)
105 1ci6_A Transcription factor AT 27.1 1.3E+02 0.0046 19.6 8.3 26 287-312 31-56 (63)
106 4dzn_A Coiled-coil peptide CC- 27.0 81 0.0028 17.0 4.6 21 288-308 4-24 (33)
107 3azd_A Short alpha-tropomyosin 26.9 23 0.00077 20.8 1.0 23 286-308 11-33 (37)
108 1ses_A Seryl-tRNA synthetase; 26.9 3.2E+02 0.011 25.2 9.6 18 222-239 28-45 (421)
109 4akv_A Sorting nexin-33; trans 26.8 3.6E+02 0.012 24.5 25.0 61 121-181 176-237 (386)
110 1ic2_A Tropomyosin alpha chain 26.5 1.6E+02 0.0054 20.2 9.0 25 286-310 48-72 (81)
111 3mq7_A Bone marrow stromal ant 26.1 2E+02 0.007 21.4 11.3 27 286-312 71-97 (121)
112 3ra3_B P2F; coiled coil domain 25.4 72 0.0024 16.6 2.6 20 286-305 7-26 (28)
113 3v86_A De novo design helix; c 25.3 79 0.0027 16.3 4.1 21 289-309 3-23 (27)
114 3zbh_A ESXA; unknown function, 24.9 1.7E+02 0.0059 20.1 8.5 60 135-196 25-84 (99)
115 1dip_A Delta-sleep-inducing pe 24.5 81 0.0028 21.4 3.5 31 285-315 14-44 (78)
116 3oja_B Anopheles plasmodium-re 23.7 4.8E+02 0.016 24.8 12.8 21 289-309 540-560 (597)
117 1dkg_A Nucleotide exchange fac 23.3 1.6E+02 0.0056 24.2 6.0 42 286-327 42-87 (197)
118 2pms_C Pneumococcal surface pr 23.3 1.5E+02 0.0052 22.4 5.2 22 285-306 67-88 (125)
119 3mq9_A Bone marrow stromal ant 23.2 4.5E+02 0.015 24.3 17.7 31 286-316 436-466 (471)
120 2aze_B Transcription factor E2 22.7 1.4E+02 0.0047 21.9 4.9 31 286-316 6-36 (106)
121 2ve7_C Kinetochore protein NUF 22.6 1.4E+02 0.0047 25.7 5.7 26 216-241 121-146 (250)
122 1wa7_B TIP, hypothetical 28.7 22.1 47 0.0016 17.4 1.5 14 29-42 3-16 (26)
123 3mtu_E Head morphogenesis prot 21.7 2E+02 0.0069 19.7 5.6 26 291-316 42-67 (77)
124 2ke4_A CDC42-interacting prote 21.2 1.6E+02 0.0054 21.3 4.9 33 283-315 12-44 (98)
125 2q12_A DIP13 alpha, DCC-intera 21.2 3.7E+02 0.013 22.6 18.8 43 131-173 19-61 (265)
126 3gwk_C SAG1039, putative uncha 20.1 2.3E+02 0.0077 19.6 7.6 12 183-194 70-81 (98)
No 1
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=100.00 E-value=2.3e-45 Score=347.20 Aligned_cols=291 Identities=18% Similarity=0.296 Sum_probs=228.4
Q ss_pred CcceeecchhhHHHHHHHHHHhCCC-CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPS-HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~-~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
++|.|+||||||.|||+.|...||+ ++|||||+|..+ ++++++||++||++|++||++|+.||+|++|+.|+.||
T Consensus 50 ~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~----g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL 125 (366)
T 3dyt_A 50 TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT----GRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFL 125 (366)
T ss_dssp CSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC---------------CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCccc----CCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhh
Confidence 4789999999999999999999999 999999999987 77899999999999999999999999999999999999
Q ss_pred ccccc-chhhccc-------CCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q psy18202 85 TAKLA-EFSMHKK-------HSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKE- 155 (357)
Q Consensus 85 ~~~~~-~~~~~~k-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~- 155 (357)
+.++. .|....+ .|+++++.+.. +.. ...+.+.+++|+.++.|+..++..++.+.+.+.+++++
T Consensus 126 ~~~~~~~w~~~~r~~~~~~~~g~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 198 (366)
T 3dyt_A 126 NFRDEKEWKTGKRKAERDELAGVMIFSTMEP----EAP---DLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRC 198 (366)
T ss_dssp HCSSHHHHHHHHHHHHTCCCCGGGGGGGEEE----SSC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHhhhhccCcccchHHHHHhcC----CCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98752 2432211 23444433321 111 11245567889999999999999999999999999877
Q ss_pred hHHHHHHHHHHHHHHHHhhCC------c--hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy18202 156 RKDYVSEAHQFAIVLNTWAGY------E--PQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQV 227 (357)
Q Consensus 156 ~~~l~~~~~~~~~~~~~l~~~------E--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~ 227 (357)
..+++.++..+|.+|..||.+ + ++|+.++..+|++++.++++..+ ++......|+++|++|.+++.++|++
T Consensus 199 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~~-qa~~d~~~l~E~L~~Y~~~l~avKd~ 277 (366)
T 3dyt_A 199 TGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAE-QPKKDLHFLMECNHEYKGFLGCFPDI 277 (366)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHH-SGGGTHHHHHHHHHHHHHHHTTHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888887752 2 34999999999999999999888 67666779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHH
Q psy18202 228 LARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDE 307 (357)
Q Consensus 228 l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~ 307 (357)
|.+|..++..+..+. ++... ++. +. .+++.++.
T Consensus 278 l~~r~~aL~k~~e~~-----------kl~~~--~K~--------------------~~--------------~~~~~~~~ 310 (366)
T 3dyt_A 278 IGTHKGAIEKVKESD-----------KLVAT--SKI--------------------TL--------------QDKQNMVK 310 (366)
T ss_dssp HHHHHHHHHHHHTHH-----------HHHHT--TSS--------------------CH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHhc--cCc--------------------ch--------------hHHHHHHH
Confidence 999998766555432 22222 110 01 13566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 308 KLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 308 ~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
+++.|+..++.|+.||+.+|..||+.+|.+|++.||.+|++.++.|+.
T Consensus 311 r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~ 358 (366)
T 3dyt_A 311 RVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQ 358 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999964
No 2
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=100.00 E-value=9.9e-45 Score=344.18 Aligned_cols=291 Identities=17% Similarity=0.295 Sum_probs=230.8
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
++|.|+||||||.|||+.|...||+++|||||+|..+ ++++++||++||++|++||++|+.||+|++|+.|+.||+
T Consensus 71 ~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~----g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~ 146 (386)
T 4akv_A 71 AASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQAT----GRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLS 146 (386)
T ss_dssp SSSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC----------CCTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHS
T ss_pred CCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCccc----CCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhC
Confidence 5799999999999999999999999999999999987 778999999999999999999999999999999999999
Q ss_pred cccc-chhhccc-------CCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy18202 86 AKLA-EFSMHKK-------HSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKER- 156 (357)
Q Consensus 86 ~~~~-~~~~~~k-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~- 156 (357)
.++. .|...++ .|+++++.+.. +. ..+++.+.+++|+.++.|+..++..+..+.+.++++++++
T Consensus 147 ~~~~~~w~~~~r~~~~~~~~g~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~ 219 (386)
T 4akv_A 147 CLDDKQWKMGKRRAEKDEMVGASFLLTFQI----PT---EHQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHV 219 (386)
T ss_dssp CCCSHHHHHHHHHHHTCSCCGGGGGGTSBC----CS---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHhhhhccCCCccchHHHHHhcC----Cc---cccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8742 2332211 13334433211 11 1122556778999999999999999999999999998874
Q ss_pred HHHHHHHHHHHHHHHHhhC-------Cc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTWAG-------YE-PQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVL 228 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l~~-------~E-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l 228 (357)
.++..++..+|.++..|+. .+ ++|+.++..+|++++.++++..+ ++......|.++|++|.+++.++|++|
T Consensus 220 ~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~e~i~~l~~~-Qa~~d~~~L~E~L~~Y~~ll~s~Kdll 298 (386)
T 4akv_A 220 GGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAE-QPKNDLFQMLDTLSLYQGLLSNFPDII 298 (386)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHHH-GGGTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667776666654 23 34999999999999999999888 777777899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHH
Q psy18202 229 ARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEK 308 (357)
Q Consensus 229 ~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~ 308 (357)
.+|..++..+..++ ++... +| ++ +.+++.++.+
T Consensus 299 ~~R~~aL~k~~ea~-----------kl~~~--~K--------------------~~--------------~~~~~e~~~r 331 (386)
T 4akv_A 299 HLQKGAFAKVKESQ-----------RMSDE--GR--------------------MV--------------QDEADGIRRR 331 (386)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHT--TS--------------------SC--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------HHHHh--CC--------------------cc--------------HHHHHHHHHH
Confidence 99988766555442 22222 11 01 1234557889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 309 LQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 309 ~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
++.|+..++.|+.+|+.+|..||+.+|.+|++.||.+|++.++.|+.
T Consensus 332 ~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~ 378 (386)
T 4akv_A 332 CRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEK 378 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964
No 3
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.92 E-value=3.5e-26 Score=189.24 Aligned_cols=96 Identities=34% Similarity=0.613 Sum_probs=80.3
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHH--hCCCCCCCCCCCccccch---------h-------------hhcCCHHHHHH
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVE--TLPSHIIPPLPEKHSLLE---------H-------------LNRYSKEFILC 56 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~--~~p~~~iPplP~K~~~~~---------~-------------~~~~~~~fie~ 56 (357)
|.|..+++.|+|||+||.|||++|.. .|||++|||||+|+.+.. . ...|+++||+.
T Consensus 37 p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~~~~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~ 116 (161)
T 3hpc_X 37 PTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAV 116 (161)
T ss_dssp TTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccchhhhhhcccccccccchhHhhhhcccccHHHHHH
Confidence 78999999999999999999999999 899999999999998621 0 01256789996
Q ss_pred H---HHHHHHHHHHHHcCccccCChhhhccccccccchhhcccC
Q psy18202 57 R---MKLLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKH 97 (357)
Q Consensus 57 R---~~~L~~fL~~i~~hp~L~~~~~~~~FL~~~~~~~~~~~k~ 97 (357)
| +++||+||++|+.||+|++|+.|+.||+.++ ++..+.|+
T Consensus 117 Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~-dl~~~~k~ 159 (161)
T 3hpc_X 117 FKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQ-DLSVRRKN 159 (161)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCS-CSCC----
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCc-cchhhccC
Confidence 4 4569999999999999999999999999995 78877765
No 4
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=182.44 Aligned_cols=88 Identities=48% Similarity=0.818 Sum_probs=80.2
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|...+|.|+||||||.|||+.|...||+++|||||+|..+.++.++++++||++||++||.||++|+.||.|++|+.|
T Consensus 38 ~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~ 117 (138)
T 3iq2_A 38 GEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDF 117 (138)
T ss_dssp SSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGGGCHHHHHHHHHHHHHHHHHHHHSTTGGGCHHH
T ss_pred CCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccccccCCHHHHHHHHHHHHHHHHHHHcCHhhhcChHH
Confidence 57888999999999999999999999999999999999998755556789999999999999999999999999999999
Q ss_pred hccccccc
Q psy18202 81 IIFLTAKL 88 (357)
Q Consensus 81 ~~FL~~~~ 88 (357)
+.||+.++
T Consensus 118 ~~FL~~~~ 125 (138)
T 3iq2_A 118 KIFLTAQA 125 (138)
T ss_dssp HHHHHTTC
T ss_pred HhhhCCCC
Confidence 99999885
No 5
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.89 E-value=4.3e-24 Score=178.38 Aligned_cols=86 Identities=34% Similarity=0.596 Sum_probs=80.7
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhC-----CCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcccc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETL-----PSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLS 75 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~-----p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~ 75 (357)
|.|....|.|+|||+||.|||+.|...| |+++|||||+|..+. ++++++||++||++||+||++|+.||+|+
T Consensus 69 ~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~~~---~~~~~~fie~Rr~~Le~fL~~l~~~p~l~ 145 (162)
T 1ocs_A 69 PSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLS---NRFSNEVIEERRQGLNTWMQSVAGHPLLQ 145 (162)
T ss_dssp TTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCCSS---CTTSHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCCCcccc---cCCCHHHHHHHHHHHHHHHHHHHcCHHhh
Confidence 5788899999999999999999999998 999999999999862 57899999999999999999999999999
Q ss_pred C-Chhhhcccccccc
Q psy18202 76 V-NSHAIIFLTAKLA 89 (357)
Q Consensus 76 ~-~~~~~~FL~~~~~ 89 (357)
. ++.|+.||+.++|
T Consensus 146 ~~s~~l~~FL~~~~~ 160 (162)
T 1ocs_A 146 SGSKVLVRFIEAEKF 160 (162)
T ss_dssp HHCHHHHHHHHCSSC
T ss_pred hCCHHHHHhCCCccc
Confidence 8 8999999999865
No 6
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.88 E-value=2.8e-23 Score=167.34 Aligned_cols=87 Identities=32% Similarity=0.539 Sum_probs=78.2
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCC--CCCCCCCCCccccchh------hhcCCHHHHHHHHHHHHHHHHHHHcCc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLP--SHIIPPLPEKHSLLEH------LNRYSKEFILCRMKLLDQFLRRVTSHP 72 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p--~~~iPplP~K~~~~~~------~~~~~~~fie~R~~~L~~fL~~i~~hp 72 (357)
|.|...+|.|.||||||.|||+.|...|| |++|||||+|..+... .++++++||++|+++||.||++|+.||
T Consensus 33 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p 112 (128)
T 2i4k_A 33 PLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHP 112 (128)
T ss_dssp SSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSCCCCSCCCSSTTHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHcCc
Confidence 57888999999999999999999999996 6899999999986211 124689999999999999999999999
Q ss_pred cccCChhhhcccccc
Q psy18202 73 VLSVNSHAIIFLTAK 87 (357)
Q Consensus 73 ~L~~~~~~~~FL~~~ 87 (357)
.|++|+.|+.||+.+
T Consensus 113 ~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 113 TMLQDPDVREFLEKE 127 (128)
T ss_dssp HHHCSHHHHTTTTCC
T ss_pred ccccChHHHHhhCCC
Confidence 999999999999976
No 7
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2e-23 Score=171.69 Aligned_cols=88 Identities=33% Similarity=0.580 Sum_probs=79.4
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchh-----hhcCCHHHHHHHHHHHHHHHHHHHcCcccc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEH-----LNRYSKEFILCRMKLLDQFLRRVTSHPVLS 75 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-----~~~~~~~fie~R~~~L~~fL~~i~~hp~L~ 75 (357)
|.|...+|.|.||||||.|||+.|... |+++|||||+|..+..+ .++++++||++||++||.||++|+.||.|+
T Consensus 40 ~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~~~~~~~~~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~ 118 (146)
T 2csk_A 40 PIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQ 118 (146)
T ss_dssp SSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCCCSSTTCCCSSCCCHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchhhccccccccCCCCHHHHHHHHHHHHHHHHHHHcChhhc
Confidence 568889999999999999999999875 89999999999986211 157899999999999999999999999999
Q ss_pred CChhhhcccccccc
Q psy18202 76 VNSHAIIFLTAKLA 89 (357)
Q Consensus 76 ~~~~~~~FL~~~~~ 89 (357)
.++.|+.||+.+++
T Consensus 119 ~s~~l~~FL~~~~~ 132 (146)
T 2csk_A 119 NERCLHMFLQEEAI 132 (146)
T ss_dssp HCHHHHHHTTCSSC
T ss_pred cCcHHHhhcCCCch
Confidence 99999999999864
No 8
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.86 E-value=1.1e-22 Score=160.15 Aligned_cols=79 Identities=20% Similarity=0.367 Sum_probs=74.6
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+.|.|+||||||.|||+.|...||++++||||+|..+ + ++++||++||++||.||++|+.||.|++|+.|+.||+
T Consensus 32 ~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~----~-~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~ 106 (115)
T 3lui_A 32 GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLF----S-LTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLR 106 (115)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSS----C-CCHHHHHHHHHHHHHHHHHHHHSHHHHHCHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCccc----C-CCHHHHHHHHHHHHHHHHHHHcChhhhcChHHHHHHC
Confidence 4689999999999999999999999999999999986 3 7899999999999999999999999999999999999
Q ss_pred cccc
Q psy18202 86 AKLA 89 (357)
Q Consensus 86 ~~~~ 89 (357)
.+..
T Consensus 107 ~~~~ 110 (115)
T 3lui_A 107 RAQQ 110 (115)
T ss_dssp HHHH
T ss_pred cCHH
Confidence 8753
No 9
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.82 E-value=5e-21 Score=153.84 Aligned_cols=82 Identities=27% Similarity=0.298 Sum_probs=75.2
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
...|.|.||||||.|||+.|...||. .+||||+|..+ ++++++||++||++|+.||++|+.||.|+.|+.|+.||
T Consensus 47 ~~~~~V~RRYSdF~~L~~~L~~~~~~-~~p~lP~K~~~----g~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL 121 (130)
T 3p0c_A 47 SHEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKKII----GKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFL 121 (130)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHTTSS-CTTSCCCCCCC----SCCCSCSHHHHHHHHHHHHHHHHHTSCSEECHHHHHHH
T ss_pred CeEEEEEehHHHHHHHHHHHHHHcCC-CCCCCCCcccc----ccCCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHh
Confidence 46799999999999999999999974 57999999987 67899999999999999999999999999999999999
Q ss_pred cccccch
Q psy18202 85 TAKLAEF 91 (357)
Q Consensus 85 ~~~~~~~ 91 (357)
+.+++++
T Consensus 122 ~~~~~~~ 128 (130)
T 3p0c_A 122 HFHFYEI 128 (130)
T ss_dssp HSCTTC-
T ss_pred CCCcccc
Confidence 9987653
No 10
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.82 E-value=8.1e-21 Score=150.13 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=73.3
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCC-CCCCccccch---hhhcCCHHHHHHHHHHHHHHHHHHHcCccc---cCCh
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIP-PLPEKHSLLE---HLNRYSKEFILCRMKLLDQFLRRVTSHPVL---SVNS 78 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iP-plP~K~~~~~---~~~~~~~~fie~R~~~L~~fL~~i~~hp~L---~~~~ 78 (357)
.+|.|.||||||.|||+.|...|| +++| |||+|..+.+ ..++++++||++||++||.||++|+.||.+ +.|+
T Consensus 27 ~~~~V~RRYsdF~~L~~~L~~~~~-~~~P~~lP~K~~~~~~~~~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~ 105 (117)
T 1kmd_A 27 PNKRLYKRYSEFWKLKTRLERDVG-STIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTK 105 (117)
T ss_dssp SSCCEEECHHHHHHHHHHHHHHHC-SCCCCCCCCCCCSSCSTTCCCTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSH
T ss_pred ceEEEEechHHHHHHHHHHHHHcC-ccCCCCCCCCCEecccccccCCCCHHHHHHHHHHHHHHHHHHHhCcchhhhhcCH
Confidence 378999999999999999999998 7899 9999998510 015689999999999999999999999976 7899
Q ss_pred hhhcccccccc
Q psy18202 79 HAIIFLTAKLA 89 (357)
Q Consensus 79 ~~~~FL~~~~~ 89 (357)
.|+.||+.+++
T Consensus 106 ~l~~FL~~~~~ 116 (117)
T 1kmd_A 106 IAQDFLQLSKP 116 (117)
T ss_dssp HHHHHTTCCCC
T ss_pred HHHHhcCCCCC
Confidence 99999998753
No 11
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.80 E-value=4.4e-20 Score=152.90 Aligned_cols=79 Identities=27% Similarity=0.443 Sum_probs=73.4
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhh-cCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLN-RYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~-~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
...|.|.|||+||.|||+.|...||++++ |||+|..+ + +++++||++||.+|+.||++|+.||.|+.++.|+.|
T Consensus 36 ~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~-plP~K~~~----g~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~F 110 (154)
T 1xte_A 36 RSEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIF----GDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAF 110 (154)
T ss_dssp TEEEEEEEEHHHHHHHHHHHHHHCGGGCC-CCCCSCCS----SCTTCHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHH
T ss_pred CEEEEEEeeHHHHHHHHHHHHHHCCCCcc-cCCCcccc----CCCCCHHHHHHHHHHHHHHHHHHHcChhhccChHHHHH
Confidence 35799999999999999999999999865 59999987 5 789999999999999999999999999999999999
Q ss_pred ccccc
Q psy18202 84 LTAKL 88 (357)
Q Consensus 84 L~~~~ 88 (357)
|+.++
T Consensus 111 L~~~~ 115 (154)
T 1xte_A 111 LQMDS 115 (154)
T ss_dssp TTTTC
T ss_pred hCCCC
Confidence 99875
No 12
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.77 E-value=1.8e-19 Score=147.66 Aligned_cols=83 Identities=24% Similarity=0.426 Sum_probs=75.3
Q ss_pred CCcceeecchhhHHHHHHHHHHhCC--------CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcc-cc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLP--------SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPV-LS 75 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p--------~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~-L~ 75 (357)
...|.|.|||+||.|||..|...|| +++|||||+|..+ ++ +++|+++|+.+|+.||+.|+.||. ++
T Consensus 49 ~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~~----~~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~ 123 (143)
T 1h6h_A 49 GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYV----GV-KQEIAEMRIPALNAYMKSLLSLPVWVL 123 (143)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCCS----SC-HHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCccc----Cc-CHHHHHHHHHHHHHHHHHHHcCCHhhh
Confidence 4689999999999999999999999 4689999999987 44 789999999999999999999997 99
Q ss_pred CChhhhccccccccchh
Q psy18202 76 VNSHAIIFLTAKLAEFS 92 (357)
Q Consensus 76 ~~~~~~~FL~~~~~~~~ 92 (357)
+|+.|..||+..+.++.
T Consensus 124 ~s~~~~~Fl~~~~~d~~ 140 (143)
T 1h6h_A 124 MDEDVRIFFYQSPYDSE 140 (143)
T ss_dssp TCHHHHHHHSCCHHHHT
T ss_pred cCHHHHHHhCCCccccc
Confidence 99999999998865543
No 13
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.77 E-value=2e-19 Score=145.34 Aligned_cols=73 Identities=23% Similarity=0.278 Sum_probs=67.8
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcc-ccCChhhh
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPV-LSVNSHAI 81 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~-L~~~~~~~ 81 (357)
...|.|.||||||.|||+.|...||++.+||+|+|..+ ++++++||++||.+|+.||++|+.||. |++++.+.
T Consensus 34 ~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~----~~~~~~~ie~Rr~~Le~yL~~ll~~~~~l~~sp~~l 107 (134)
T 2v14_A 34 DETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLF----GNKDERVIAERRSHLEKYLRDFFSVMLQSATSPLHI 107 (134)
T ss_dssp TEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSS----CTTSHHHHHHHHHHHHHHHHHHHHHHHHCTTSTTCT
T ss_pred CeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccc----cCCCHHHHHHHHHHHHHHHHHHHhChHhhcCCHHHH
Confidence 46799999999999999999999999999999999987 678999999999999999999999997 88898543
No 14
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-19 Score=142.69 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=69.0
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
...|.|.||||||.|||+.|...|| +||||+|.. ++++++||++||.+||.||++|+.||.+. ++.|..||
T Consensus 43 ~~~~~V~RRYSdF~~Lh~~L~~~~~---iP~lP~K~~-----~~~~~~~ie~Rr~~Le~yL~~ll~~p~~~-s~~l~~FL 113 (128)
T 2ett_A 43 GRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSKRL-----PNWRTRGLEQRRQGLEAYIQGILYLNQEV-PKELLEFL 113 (128)
T ss_dssp TEEEEEEEEHHHHHHHHHHHHTTSS---CCCCCCSSC-----CCSSSSCHHHHHHHHHHHHHHHHHHSSSS-CHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHHCC---CCCCCCCcc-----CCCCHHHHHHHHHHHHHHHHHHHhCchhc-CHHHHHhc
Confidence 4579999999999999999999987 899999985 36789999999999999999999999887 79999999
Q ss_pred cccc
Q psy18202 85 TAKL 88 (357)
Q Consensus 85 ~~~~ 88 (357)
+.+.
T Consensus 114 ~~~~ 117 (128)
T 2ett_A 114 RLRH 117 (128)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 9884
No 15
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.76 E-value=6.8e-19 Score=139.72 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=72.3
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcC-CHHHHHHHHHHHHHHHHHHHcC-ccccCChhhhcc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRY-SKEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIF 83 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~-~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~F 83 (357)
+.|.|.|||+||.|||..|...||+..+||||+|..+ +++ +.+|+++|+.+|+.||+.|+++ |.+++|+.+..|
T Consensus 36 ~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~----g~~~~~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~F 111 (121)
T 2ar5_A 36 EPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVL----GRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTF 111 (121)
T ss_dssp SCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCS----SSSSTTHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHH
T ss_pred eeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeec----CccCcHHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHH
Confidence 5899999999999999999999999999999999987 443 5789999999999999999986 799999999999
Q ss_pred cccc
Q psy18202 84 LTAK 87 (357)
Q Consensus 84 L~~~ 87 (357)
+++.
T Consensus 112 f~~~ 115 (121)
T 2ar5_A 112 FHGS 115 (121)
T ss_dssp TSSS
T ss_pred cCCc
Confidence 9886
No 16
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.72 E-value=4.1e-18 Score=136.36 Aligned_cols=76 Identities=24% Similarity=0.383 Sum_probs=67.1
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
.+..|.|.||||||.|||+.|...+| +||+|+|.. ++++++||++||.+|+.||++|+.||.+. ++.|..|
T Consensus 51 ~~~~w~V~RRYsdF~~L~~~L~~~~~---~p~lP~K~~-----~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~F 121 (129)
T 4az9_A 51 NGRKHFVEKRYSEFHALHKKLKKCIK---TPEIPSKHV-----RNWVPKVLEQRRQGLETYLQAVILENEEL-PKLFLDF 121 (129)
T ss_dssp TTEEEEEEEEHHHHHHHHHHHTTTSC---CCCCCCSCC-----SCCCHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHH
T ss_pred CCEEEEEEeeHHHHHHHHHHHHHhCC---CCCCCcccc-----cCCCHHHHHHHHHHHHHHHHHHHhCchhh-CHHHHHH
Confidence 35679999999999999999999887 688998875 46899999999999999999999999975 7899999
Q ss_pred ccccc
Q psy18202 84 LTAKL 88 (357)
Q Consensus 84 L~~~~ 88 (357)
|+.+.
T Consensus 122 L~~~~ 126 (129)
T 4az9_A 122 LNVRH 126 (129)
T ss_dssp TTC--
T ss_pred CCCCC
Confidence 99873
No 17
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.71 E-value=1.3e-17 Score=136.14 Aligned_cols=82 Identities=24% Similarity=0.397 Sum_probs=73.5
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCC---------CCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCc-cc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSH---------IIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHP-VL 74 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~---------~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp-~L 74 (357)
+..|.|.|||+||.+||..|...||.. +||+||+|..+ + +.+|+++|+.+|+.||+.|+++| .+
T Consensus 35 ~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~~----~--~~~~~e~Rr~~Le~YL~~Ll~~p~~i 108 (141)
T 1kq6_A 35 LSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWF----D--GQRAAENRQGTLTEYCSTLMSLPTKI 108 (141)
T ss_dssp CCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCC----C--SHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCcccc----C--CHHHHHHHHHHHHHHHHHHHhCCHhh
Confidence 457999999999999999999999965 89999999987 3 37999999999999999999987 59
Q ss_pred cCChhhhccccccccchh
Q psy18202 75 SVNSHAIIFLTAKLAEFS 92 (357)
Q Consensus 75 ~~~~~~~~FL~~~~~~~~ 92 (357)
++|+.|..||+....++.
T Consensus 109 ~~s~~v~~Fl~~~~~d~~ 126 (141)
T 1kq6_A 109 SRCPHLLDFFKVRPDDLK 126 (141)
T ss_dssp HTCHHHHHHHSCCHHHHS
T ss_pred cCChHHHHHhCCCccccC
Confidence 999999999998865554
No 18
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.70 E-value=2.6e-18 Score=140.00 Aligned_cols=82 Identities=23% Similarity=0.341 Sum_probs=67.7
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcC-CHHHHHHHHHHHHHHHHHHHc-CccccCChhhhcc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRY-SKEFILCRMKLLDQFLRRVTS-HPVLSVNSHAIIF 83 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~-~~~fie~R~~~L~~fL~~i~~-hp~L~~~~~~~~F 83 (357)
..|.|.|||+||.|||..|...||+..+||||+|..+ +++ +.+|+++|+.+|+.||+.|++ +|.+.+|+.|..|
T Consensus 51 ~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~----~~~~~~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~F 126 (140)
T 2iwl_X 51 EPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVL----GRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTF 126 (140)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC--------------CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHH
T ss_pred eeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeec----CccchHHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHH
Confidence 4689999999999999999999999999999999987 443 567999999999999999998 6899999999999
Q ss_pred ccccccch
Q psy18202 84 LTAKLAEF 91 (357)
Q Consensus 84 L~~~~~~~ 91 (357)
|+....+.
T Consensus 127 l~~~~~D~ 134 (140)
T 2iwl_X 127 FHPLLRDE 134 (140)
T ss_dssp HSCCTTTC
T ss_pred hCCCCCCc
Confidence 99875443
No 19
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.63 E-value=5.3e-16 Score=127.95 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCC--------------CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPS--------------HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTS 70 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~--------------~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~ 70 (357)
.+.|.|.|||+||.+||..|...||. ++||+||+|..+ + +.+|+++|+.+|+.||+.|+.
T Consensus 44 ~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~LP~K~~~----~--~~~~~e~Rr~~Le~YL~~Ll~ 117 (156)
T 2v6v_A 44 GKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPY----V--TNSITKKRKEDLNIYVADLVN 117 (156)
T ss_dssp SCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCCCCCCSS----C--CHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCCCCCccc----C--CHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999983 789999999875 2 578999999999999999998
Q ss_pred -CccccCChhhhccccccccchhh
Q psy18202 71 -HPVLSVNSHAIIFLTAKLAEFSM 93 (357)
Q Consensus 71 -hp~L~~~~~~~~FL~~~~~~~~~ 93 (357)
+|.++.|+.|..||+..+.++..
T Consensus 118 lp~~i~~s~~v~~Ff~~~~~D~~~ 141 (156)
T 2v6v_A 118 LPDYISRSEMVHSLFVVLNNGFDR 141 (156)
T ss_dssp SCHHHHTSHHHHHTTSCCSSSSCE
T ss_pred CCccccCCHHHHHHhCCCCccccc
Confidence 55799999999999988655543
No 20
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=99.59 E-value=9e-13 Score=118.01 Aligned_cols=193 Identities=13% Similarity=0.114 Sum_probs=150.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 122 ~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~ 201 (357)
+..|++|+.....+..++..+..+.+.+.......+.+......||.++..+.....+-...+..++..++ ..+.+
T Consensus 48 ~T~D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~d- 123 (251)
T 2fic_A 48 ETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENND---LLWMD- 123 (251)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSTTHHHHHHHHHHHH---HHHHH-
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHH---HHHHH-
Confidence 34599999999999999999999999999999999999999999999998875433322334444554444 22233
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 202 LIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
+.+.+...+.+||..|..++..++.++..|+.++.+|+.+...+.+.+....+
T Consensus 124 ~~~~l~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k--------------------------- 176 (251)
T 2fic_A 124 YHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKK--------------------------- 176 (251)
T ss_dssp HHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcC---------------------------
Confidence 33345568999999999999999999999999999998876666544332211
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
-+.+|..++.+++.++.+|+.+++.+..||++|...+...+...|..|+..|+.||.++.++|.
T Consensus 177 ---------d~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~ 240 (251)
T 2fic_A 177 ---------DEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQ 240 (251)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234556777788899999999999999999999999999999999999999999999999995
No 21
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=99.54 E-value=1.5e-12 Score=115.92 Aligned_cols=195 Identities=11% Similarity=0.063 Sum_probs=154.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
..|++|++....++.++..+..+.+.+.......+.+......||.++..+...+......+..+++. +..++.+ +
T Consensus 34 t~D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~-~ 109 (244)
T 1uru_A 34 TADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGA---SESLWAD-F 109 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHH---HHHHHHH-H
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH---HHHHHHH-H
Confidence 34899999999999999999999999999888888888888899999988866554333444444443 3334344 4
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCC
Q psy18202 203 IEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKS 282 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (357)
.+.+...+.+||..|..++..++.++..|+.++.+|+.+...+.+.+...++ +
T Consensus 110 ~~~~~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k--------~------------------- 162 (244)
T 1uru_A 110 AHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANK--------R------------------- 162 (244)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCB--------T-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc--------C-------------------
Confidence 4455578999999999999999999999999999998877766554321100 0
Q ss_pred ccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 283 TSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 283 ~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
+-+.+|..++.+++.++..|+.++..+..||++|...+...+...|..|+..|..||.++.++|+-
T Consensus 163 -------kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~ 228 (244)
T 1uru_A 163 -------KDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSE 228 (244)
T ss_dssp -------TBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012234456677888999999999999999999999999999999999999999999999999963
No 22
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.54 E-value=5.3e-15 Score=120.98 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=73.6
Q ss_pred CCcceeecchhhHHHHHHHHHHhCC---------CCCCCCCCCccccchhhhc-CCHHHHHHHHHHHHHHHHHHHcCc-c
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLP---------SHIIPPLPEKHSLLEHLNR-YSKEFILCRMKLLDQFLRRVTSHP-V 73 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p---------~~~iPplP~K~~~~~~~~~-~~~~fie~R~~~L~~fL~~i~~hp-~ 73 (357)
.+.|.|.|||+||..||..|...|| .++||+||+|..+ ++ .+.+++++|+..|+.||+.|++.| .
T Consensus 38 ~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~----~~~~~~~~~e~R~~~Le~YL~~Ll~lp~~ 113 (149)
T 2l73_A 38 GSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLL----GRVGRTSRGLARLQLLETYSRRLLATAER 113 (149)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCC----SSCCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeee----ccccchHHHHHHHHHHHHHHHHHHhCCcc
Confidence 5679999999999999999999999 3689999999987 22 357899999999999999999866 4
Q ss_pred ccCChhhhccccccccchh
Q psy18202 74 LSVNSHAIIFLTAKLAEFS 92 (357)
Q Consensus 74 L~~~~~~~~FL~~~~~~~~ 92 (357)
+.+|+.|..||....+++.
T Consensus 114 i~~s~~v~~Ff~~~~~D~~ 132 (149)
T 2l73_A 114 VARSPTITGFFAPQPLDLE 132 (149)
T ss_dssp HHHSHHHHHHHSCCGGGGS
T ss_pred ccCCHHHHHHhCCCccccC
Confidence 9999999999998876554
No 23
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.36 E-value=4.2e-13 Score=104.15 Aligned_cols=76 Identities=14% Similarity=0.339 Sum_probs=66.1
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHc-CccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTS-HPVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~-hp~L~~~~~~~~F 83 (357)
++.+.|.|||++|..||+.|...||...+|++|+|..+ +. ...-++ |+++|+.||+.|++ .|.+.+|+.|..|
T Consensus 50 ~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll----~~-t~~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~F 123 (127)
T 2wwe_A 50 NETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHL----PF-TNSDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSF 123 (127)
T ss_dssp SCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSH----HH-HHCHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCcccc----Cc-CHHHHH-HHHHHHHHHHHHhcCCceeecCHHHHHH
Confidence 56789999999999999999999999999999999965 11 122244 99999999999998 7999999999999
Q ss_pred ccc
Q psy18202 84 LTA 86 (357)
Q Consensus 84 L~~ 86 (357)
|..
T Consensus 124 f~~ 126 (127)
T 2wwe_A 124 FLS 126 (127)
T ss_dssp HHC
T ss_pred hCC
Confidence 864
No 24
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.24 E-value=6.3e-12 Score=117.43 Aligned_cols=79 Identities=25% Similarity=0.456 Sum_probs=70.2
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCC--------CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcc-cc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPS--------HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPV-LS 75 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~--------~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~-L~ 75 (357)
.+.|.|.|||+||..||..|...||. ++||+||+|..+ ++ ..+|+++|+..|+.||++++.+|. +.
T Consensus 52 ~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~~~----~~-~~~~~e~R~~~Le~yl~~ll~lp~~i~ 126 (341)
T 2dyb_A 52 GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVYV----GV-KQEIAEMRIPALNAYMKSLLSLPVWVL 126 (341)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCCCC----SC-HHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCcccc----Cc-cHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 46799999999999999999999993 579999999987 33 577999999999999999999887 99
Q ss_pred CChhhhccccccc
Q psy18202 76 VNSHAIIFLTAKL 88 (357)
Q Consensus 76 ~~~~~~~FL~~~~ 88 (357)
.++.+..|+....
T Consensus 127 ~~~~v~~Ff~~~~ 139 (341)
T 2dyb_A 127 MDEDVRIFFYQSP 139 (341)
T ss_dssp TCHHHHHHHSCCH
T ss_pred hhHHHHHHHhhcc
Confidence 9999999998764
No 25
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=99.23 E-value=3.6e-09 Score=93.40 Aligned_cols=194 Identities=13% Similarity=0.140 Sum_probs=149.8
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....|+.|++....+..++..++.+.+.+.....+.+.|......++..+..+.....+-...+..+.... ..++.+
T Consensus 28 e~T~D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y~~~~~~~~~~~~~~~~~---~~l~~~ 104 (237)
T 4avm_A 28 VETKDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEELKAIVWNN---DLLWED 104 (237)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHH---HHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHH---HHHHHH
Confidence 56689999999999999999999998888888888888888888889988887654322122233333222 233343
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
....+...+..|+..|..++..++.++..|+.++.+|+.+...+. +|... +
T Consensus 105 -~~~~l~~~vi~Pl~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~-------kl~~k----~----------------- 155 (237)
T 4avm_A 105 -YEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLE-------AVQNA----K----------------- 155 (237)
T ss_dssp -HHHHHCCCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTC----S-----------------
T ss_pred -HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhc----c-----------------
Confidence 333445578999999999999999999999999999977665554 34322 0
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
..+. .++..++.+.+.++..|+.++..++.|++.|..-+..-+...|..|+..|..||..+..+|.
T Consensus 156 -~kd~-------~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~~q~~f~~~~~~~~~ 221 (237)
T 4avm_A 156 -KKDE-------AKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNH 221 (237)
T ss_dssp -SCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0122 34555667788888999999999999999999999999999999999999999999998885
No 26
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=99.14 E-value=1.2e-08 Score=90.19 Aligned_cols=193 Identities=12% Similarity=0.135 Sum_probs=143.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....|+.|+.....+..++..++.|.+.+..-..+.+.|......++..+..+......-......+++.++. ++.+
T Consensus 33 ~~T~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~ly~p~~~~~~~~~~~~~~~~~---l~~d 109 (243)
T 4a3a_A 33 DETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDV---LWED 109 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHH---HHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccCccchHHHHHHHHH---HHHH
Confidence 3446889999988889999999888888888888888888888888888888754331111122223333332 2222
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+...+......|+..+..++..++.++..|..++.+|+.+...+ ++|... +
T Consensus 110 -~~~~l~d~~l~Pl~~l~~~f~~i~k~I~KR~~KllDYD~~~~k~-------~kL~~K----~----------------- 160 (243)
T 4a3a_A 110 -FHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHL-------EALQSS----K----------------- 160 (243)
T ss_dssp -HHHHHHHTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTC----S-----------------
T ss_pred -HHHHHHHHHHHHHHHHHHHChHHHHHHHHhcchHHHHHHHHHHH-------HHHHhc----c-----------------
Confidence 22222345678999999999999999999999999997765554 444432 0
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..+. .+|..++.+.+.++..|+.++..++.||+.|..-+..-+-..|..|+..|..||..+..+-
T Consensus 161 -~kd~-------~kl~kae~el~~Ak~~Ye~lN~~L~eELP~l~~~r~~~~~~~~~s~i~~Q~~f~~e~~k~~ 225 (243)
T 4a3a_A 161 -RKDE-------SRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLC 225 (243)
T ss_dssp -SCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122 3444566778888999999999999999999999999999999999999999999887653
No 27
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=98.79 E-value=1.4e-06 Score=77.81 Aligned_cols=182 Identities=10% Similarity=0.106 Sum_probs=131.1
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------Hhh-----HHHHHHHHHHHHHHHHhhC---C
Q psy18202 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLY-----------------KER-----KDYVSEAHQFAIVLNTWAG---Y 176 (357)
Q Consensus 122 ~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~-----------------k~~-----~~l~~~~~~~~~~~~~l~~---~ 176 (357)
.+.|+.|.+....++.+...+.++.+.+.... +.+ ..+-.+...||.++...|. .
T Consensus 27 Tel~~d~~~lE~r~d~~k~~~~kl~k~~~~yl~~np~~r~~~~~~~~i~k~~g~~k~~~~p~~~~~L~~~m~~~~~~l~~ 106 (256)
T 1zww_A 27 TKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGD 106 (256)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTTC---------------------CCHHHHHHHHHHHHHHHHCS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHhhCCC
Confidence 44688999998888888888877776665322 100 0000011134444433332 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 177 EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQL 255 (357)
Q Consensus 177 E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL 255 (357)
+..++.++..+|.+...++..... +...+...|.+||..++. ++..+....+.++.+..+|+.+...+
T Consensus 107 ~s~~g~aL~~~g~a~~~la~~~~~-~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~---------- 175 (256)
T 1zww_A 107 DCNFGPALGEVGEAMRELSEVKDS-LDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQ---------- 175 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred CChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 334899999999999999988766 555566789999999865 88999999999988888887643221
Q ss_pred hccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 256 TNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKIL 335 (357)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l 335 (357)
.. .++++++.++.+|+..++.+..+|..|-.. ..++-..|
T Consensus 176 ~k---------------------------------------~~eeEle~A~~~fe~~~e~~~~~m~~l~~~-e~e~~~~L 215 (256)
T 1zww_A 176 GK---------------------------------------IPDEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQL 215 (256)
T ss_dssp TT---------------------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHH
T ss_pred cc---------------------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHH
Confidence 10 025668888999999999999999999754 46777899
Q ss_pred HHHHHHHHHHHHHHHhccc
Q psy18202 336 LKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 336 ~~~a~~qi~~~~~~~~~W~ 354 (357)
..|+..|+.||+++.++++
T Consensus 216 ~~~v~aQl~y~~~~~e~L~ 234 (256)
T 1zww_A 216 SALVQAQLEYHKQAVQILQ 234 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 28
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=98.60 E-value=8.1e-06 Score=72.02 Aligned_cols=178 Identities=10% Similarity=0.099 Sum_probs=127.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h-------------------------HHHHHHHHHHHHHHHH
Q psy18202 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKE----R-------------------------KDYVSEAHQFAIVLNT 172 (357)
Q Consensus 122 ~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~----~-------------------------~~l~~~~~~~~~~~~~ 172 (357)
.+.+++|.++...++.+......+.+.+.....- + ..|+..+.+.|..|.
T Consensus 11 Tel~~d~~~lE~r~d~~~~~~~~l~k~~~~yl~pn~~~r~~~~~~~~i~k~~~~~k~~~~~~~~~~L~~~m~~~~~~l~- 89 (240)
T 2z0v_A 11 TKLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGKELG- 89 (240)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHTCCCCCCSSCCCCCCSSCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHhhcC-
Confidence 3467889888888888888777777666544220 1 113334444443332
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 173 WAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAE 251 (357)
Q Consensus 173 l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~ 251 (357)
.+..++.+|..+|.+..+++..... +.......|.+||..++ .++..+....+.++....+|+.+...+
T Consensus 90 ---~ds~~g~aL~~~g~a~~~ia~~~~~-~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~------ 159 (240)
T 2z0v_A 90 ---EDSTFGNALIEVGESMKLMAEVKDS-LDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRV------ 159 (240)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTT------
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 2344999999999999999988766 55566679999999987 788888888877777777776541111
Q ss_pred HHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 252 KEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDL 331 (357)
Q Consensus 252 ~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l 331 (357)
. + ..+.+++.++.+|+..++.+..++..+... ..++
T Consensus 160 ----~------------------------------k---------~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~-~~e~ 195 (240)
T 2z0v_A 160 ----G------------------------------K---------IPDEEVRQAVEKFEESKELAERSMFNFLEN-DVEQ 195 (240)
T ss_dssp ----T------------------------------S---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS-THHH
T ss_pred ----c------------------------------c---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHH
Confidence 0 0 125667888889999999999999999855 4677
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q psy18202 332 KKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 332 ~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
-+.|..|++.|+.||+++.++++
T Consensus 196 l~~l~~~v~aQl~y~~~~~e~L~ 218 (240)
T 2z0v_A 196 VSQLAVFIEAALDYHRQSTEILQ 218 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999988764
No 29
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=98.55 E-value=5.1e-05 Score=67.91 Aligned_cols=187 Identities=17% Similarity=0.254 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-----C--chhHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-----Y--EPQLSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-----~--E~~l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.+...++.+...++++.+.+..++.....++.+...|+..+..++. . +..+..+|..++..+..+...... +
T Consensus 25 ~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~~-l 103 (265)
T 2q12_A 25 VFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAV-L 103 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4566677777888888888888888888888888889999888764 1 222778899999999998877665 6
Q ss_pred hhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 203 IEPFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
.......+..||..++ ..+..+++.=+.=++...+|+.+ ......+... +
T Consensus 104 ~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~a-------l~k~~~~~k~---k------------------- 154 (265)
T 2q12_A 104 STQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAA-------INRYSRLSKK---R------------------- 154 (265)
T ss_dssp HHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTS---C-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCCCC---C-------------------
Confidence 6666678899998877 55666666555555555555433 2222222221 1
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
+ . +..+.+.+.++..++..|....-.....+...+..+..++-+.|..|+..|..|+++..+.|.
T Consensus 155 -~-~------e~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~ 219 (265)
T 2q12_A 155 -E-N------DKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLN 219 (265)
T ss_dssp -C-C------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -c-c------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 112345566667777777777766666777777788889999999999999999999988873
No 30
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=98.42 E-value=0.00022 Score=67.29 Aligned_cols=187 Identities=17% Similarity=0.254 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-----C-c-hhHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-----Y-E-PQLSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-----~-E-~~l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.+...++.++..++++.+.+..+....++++.+...|+..+..++. . . ..+..+|..+++.+..+...... +
T Consensus 25 ~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~-l 103 (385)
T 2q13_A 25 VFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAV-L 103 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4556667777777777777778887777888888888888888664 1 1 22667899999999999777655 6
Q ss_pred hhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 203 IEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
.......+..||..++. .+..+++.-+. ++.+...++........+... +
T Consensus 104 ~~~~~~~~~~PL~~f~~~di~~~ke~kk~-------fek~~~~yd~al~k~~~~~k~---k------------------- 154 (385)
T 2q13_A 104 STQLADAMMFPITQFKERDLKEILTLKEV-------FQIASNDHDAAINRYSRLSKK---R------------------- 154 (385)
T ss_dssp HHHHHHHTHHHHHHHHHTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTCCSS---S-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCCCC---C-------------------
Confidence 66666678888887763 34555544333 333333333333322222211 1
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
..++ ...+++.++..++..|....-.....|...+..+..++-+.|..|...++.|+++..+.|.
T Consensus 155 --~~e~------~~~ea~~~l~~~rk~f~~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~ 219 (385)
T 2q13_A 155 --ENDK------VKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLN 219 (385)
T ss_dssp --CCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred --chhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 1234455666677777777766666688888888899999999999999999999999984
No 31
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=98.32 E-value=0.001 Score=57.15 Aligned_cols=195 Identities=12% Similarity=0.131 Sum_probs=133.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 122 ~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~ 201 (357)
+..|.+++.--+.+.........+.+.++++..+-..++.....||..|..+|.-++.++..+..+|+....++..-.
T Consensus 3 rtvD~EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p~l~~~f~~~~~~~r~~~k~g~-- 80 (224)
T 1i4d_A 3 RTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGE-- 80 (224)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHH--
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhHH--
Confidence 457888888878888888888999999999999999999999999999999998888888888888887766654321
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 202 LIEPFHEHNSHPMKDYLMYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
.+..+|..+...+.-+. .++..-..-+..|+.+.-+....+...+.+.....+
T Consensus 81 -------~Ll~~L~~f~s~l~T~~~kaI~DT~lTIk~ye~aR~EY~ay~~~~ee~~~~~~~------------------- 134 (224)
T 1i4d_A 81 -------TLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRD------------------- 134 (224)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred -------HHHHHHHHHHHHHHHHHhHhccHHHHHHHHHHHHhHhHHHHHhhHHHhhccccc-------------------
Confidence 23333333333333322 111111112223444444444444444444322000
Q ss_pred CCccH-HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 281 KSTSE-DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 281 ~~~~~-~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
.++ .| ++.+...+..++.+|+.+...+..=|+-....|..+|...|.-|...-..|+.++.+.-
T Consensus 135 --~~~l~r-------ve~~q~~~~~ak~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l 199 (224)
T 1i4d_A 135 --AGTRGR-------LESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQL 199 (224)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccchhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 001 12 23467778889999999999999999999999999999999999999999998877654
No 32
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=97.85 E-value=0.016 Score=54.87 Aligned_cols=187 Identities=14% Similarity=0.216 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC-----c--hhHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY-----E--PQLSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~-----E--~~l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.+...++.++..++++.+.+.++......+..+...|+..+..++.. . ..+...+..++..+..+...... +
T Consensus 48 ~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~~~~~-L 126 (407)
T 4h8s_A 48 VFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLLHTE-L 126 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34555666666677777777777777777777777777777555322 1 22667788888888888776555 5
Q ss_pred hhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 203 IEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
.......+.+||..+.. .+..+++.-+. ++.+.+.+.........+... +
T Consensus 127 ~~~~~~~i~~pL~~f~k~di~~~ke~kK~-------Fek~~~~Yd~~l~Ky~~~~k~---k------------------- 177 (407)
T 4h8s_A 127 AKQLADTMVLPIIQFREKDLTEVSTLKDL-------FGLASNEHDLSMAKYSRLPKK---K------------------- 177 (407)
T ss_dssp HHHHHHHTHHHHHHHHHTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHSCST---T-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcccc---C-------------------
Confidence 55566678888877653 34444443333 333333333333333332211 1
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
+..... .+...++..+...+....-.....|...+..+..++-+.|..|...+..+++...+.|.
T Consensus 178 -~~~~~~-------~e~~~~l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~ 242 (407)
T 4h8s_A 178 -ENEKVK-------TEVGKEVAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFS 242 (407)
T ss_dssp -CCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -CchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 12233344455556555555556677777888889999999999999999999888774
No 33
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=97.39 E-value=0.061 Score=47.26 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY------EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~------E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
+++..+.+..+...+.+..+..+.+......|..+|..++.. -.+|+.+|.++++....+..-... ....+..
T Consensus 24 m~~~~P~~e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~-~~~~~~~ 102 (253)
T 2ykt_A 24 MEQFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEE-MLKSFHN 102 (253)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 444555566666556566555566655555666666555431 244888888888877777655554 4444545
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 209 HNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
.|..||..-+..-. |.+-........+|..+...|.|+..+..++...
T Consensus 103 ~li~pL~~kie~d~--K~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK 150 (253)
T 2ykt_A 103 ELLTQLEQKVELDS--RYLSAALKKYQTEQRSKGDALDKCQAELKKLRKK 150 (253)
T ss_dssp TTHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence 67777776554322 2222333345667788888999998888777765
No 34
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.13 Score=44.10 Aligned_cols=143 Identities=15% Similarity=0.221 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHH
Q psy18202 142 ISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMY 220 (357)
Q Consensus 142 l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 220 (357)
|..|.+.-+.++......+.+....+..+..||..+.+ |+....++|..+..+++.... ++..++ ..-..|+.....
T Consensus 25 L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~edddl~DIsdklgvLl~e~ge~e~~-~a~~~d-~yR~~LK~IR~~ 102 (234)
T 3plt_A 25 LSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQ-FIDKYD-QYRVTLKSIRNI 102 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHH
Confidence 44444444555556666677777788899999988755 888888888888777776433 332221 222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHH
Q psy18202 221 IDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTS 300 (357)
Q Consensus 221 ~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~ 300 (357)
=.++...-.+|..+.. ++.+|.... |...|+..|+.++..+|.
T Consensus 103 E~svqp~R~~R~~l~~--------------~I~kLk~k~-----------------------P~s~kl~~LeqELvraEa 145 (234)
T 3plt_A 103 EASVQPSRDRKEKITD--------------EIAHLKYKD-----------------------PQSTKIPVLEQELVRAEA 145 (234)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHC-----------------------TTCTHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH--------------HHHHHhccC-----------------------CCCchHHHHHHHHHHHHH
Confidence 2222222222322222 223333221 112477888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 301 QLEICDEKLQTANNHLRSDLERW 323 (357)
Q Consensus 301 ~~~~~~~~~~~i~~~~~~El~rF 323 (357)
+.-.++..+..++....+|--..
T Consensus 146 e~lvaEAqL~n~kR~~lKEa~~~ 168 (234)
T 3plt_A 146 ESLVAEAQLSNITREKLKAAYSY 168 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHhHHHHHHHHHHH
Confidence 66666666666665544444333
No 35
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=97.00 E-value=0.16 Score=44.48 Aligned_cols=193 Identities=13% Similarity=0.168 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-------CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcch
Q psy18202 140 EKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-------YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSH 212 (357)
Q Consensus 140 ~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-------~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (357)
..+..+.....+..+..+.+..+...|..+|..++. .-.+|+.+|.+++.....+..-.+. ....+...|..
T Consensus 31 P~~e~lv~~g~ky~~al~~~~~a~~af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~hr~ie~~l~~-~~k~~~~eli~ 109 (253)
T 2d1l_A 31 PVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRHRSIEAKLRQ-FSSALIDCLIN 109 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 333334333434444444444444444444444432 1234777887777776666544444 44445556666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHH
Q psy18202 213 PMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLS 292 (357)
Q Consensus 213 ~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~ 292 (357)
||..-+..-.-.-..+.++ ...+|..+..++.|+.....++.... .+.++ +| + .+. -..+.
T Consensus 110 pLe~k~e~d~k~~~~~~K~--~~~~~k~~r~elkk~~~~~~k~qkK~-rk~~~-------~g-k------~~~--~~~l~ 170 (253)
T 2d1l_A 110 PLQEQMEEWKKVANQLDKD--HAKEYKKARQEIKKKSSDTLKLQKKA-KKVDA-------QG-R------GDI--QPQLD 170 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHS-SCGGG-------TT-T------TSH--HHHHH
T ss_pred HHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHh-ccccc-------cC-C------Ccc--hHHHH
Confidence 6665555443333333332 44556677778888888777766441 11100 00 0 011 11233
Q ss_pred hhHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhcccccC
Q psy18202 293 TAIPKLTSQLEICDEK-LQTANNHLRSDLERWRLEKKNDLKKILLKIADQQI------AYYQQRSDRGNCNC 357 (357)
Q Consensus 293 ~~i~~le~~~~~~~~~-~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi------~~~~~~~~~W~~~~ 357 (357)
..+.++......++.- -+.+...+.+|-.||- .|-+.+..++..++ .+++..++-|...|
T Consensus 171 ~a~q~v~~~~~~le~~~~~~~r~AL~EERrRyc-----flv~~l~pv~~~e~~~~~e~~~l~~~l~~~~~~~ 237 (253)
T 2d1l_A 171 SALQDVNDKYLLLEETEKQAVRKALIEERGRFC-----TFISMLRPVIEEEISMLGEITHLQTISEDLKSLT 237 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHGGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3333333222211111 1224455667877774 34444455555544 57788888886443
No 36
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=96.97 E-value=0.3 Score=47.21 Aligned_cols=165 Identities=12% Similarity=0.161 Sum_probs=83.5
Q ss_pred HhhHHHHHHHHHHHHHHHH-hh-CCch-hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHH---------
Q psy18202 154 KERKDYVSEAHQFAIVLNT-WA-GYEP-QLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYI--------- 221 (357)
Q Consensus 154 k~~~~l~~~~~~~~~~~~~-l~-~~E~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------- 221 (357)
....+++..+..++..+.. +. ..+. .+..++..+-..++.++..+.. +++.+...+.++|..+....
T Consensus 50 ~iE~eYAk~L~kLakk~~~~~~~~~e~gtl~~aw~~~~~e~e~~a~~H~~-~a~~L~~~v~~~l~~~~~e~~~K~~~~~~ 128 (486)
T 3haj_A 50 RIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLE-VKASLMNDDFEKIKNWQKEAFHKQMMGGF 128 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHCCBCSSSSB
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHhhhhHH
Confidence 3344566666666665432 22 2333 2677777777777777766655 55555555666666655432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhccCCCCCCCCCCCcccCCCcccccCCccHHH
Q psy18202 222 DAVKQVLARRDVIQAEHDMCGEELQKKTAE--------------KEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDR 287 (357)
Q Consensus 222 ~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~--------------~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~k 287 (357)
..-|++...=.+++..++.....+.+.+.. ..+.... .+ .....
T Consensus 129 kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d---~~-------------------~t~k~ 186 (486)
T 3haj_A 129 KETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKAD---PS-------------------LNPEQ 186 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-------------------SCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cc-------------------CCHHH
Confidence 111222222222222333333333333332 2221111 00 01244
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTAN--------------NHLRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~--------------~~~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
+++++.++.....+++.++.+|.... ..+...++.++.+|..-|+.+|..|+..
T Consensus 187 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~~~ 254 (486)
T 3haj_A 187 LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH 254 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556555555555555543332 2344567777888888888888888765
No 37
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=96.65 E-value=0.46 Score=44.75 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh--
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAV-KQVLARRDVIQAEHDMCG-EELQKKTAEKEQL-- 255 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~-k~~l~~R~~~~~~~~~~~-~~l~kk~~~~~kL-- 255 (357)
++.++..+-...+.++..+.. +++.+...+..+|..+....... |.....-.+++..+.... ..+.+.+....+.
T Consensus 70 l~~aW~~ll~ete~~a~~H~~-lae~L~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~ck 148 (406)
T 4dyl_A 70 ISQSWAEITSQTEGLSRLLRQ-HAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALAR 148 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777776655 55555555666666555544332 222222333344444444 4454444432221
Q ss_pred -----hccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH---------------H
Q psy18202 256 -----TNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANN---------------H 315 (357)
Q Consensus 256 -----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~---------------~ 315 (357)
..... +. .....+++++.+.......+..++.+|..... .
T Consensus 149 e~e~A~~k~~-~~-------------------~k~ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~ 208 (406)
T 4dyl_A 149 DSAQAKRKYQ-EA-------------------SKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPG 208 (406)
T ss_dssp HHHHHHHCC-----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHh-hc-------------------ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11100 00 00022344444454555445555544432211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 316 LRSDLERWRLEKKNDLKKILLKIADQQ 342 (357)
Q Consensus 316 ~~~El~rF~~~k~~~l~~~l~~~a~~q 342 (357)
+...++.++..|..-|+.+|..|+...
T Consensus 209 ~~d~lQ~lEe~Ri~~lk~~L~~~~~~~ 235 (406)
T 4dyl_A 209 LLRSLQDLHEEMACILKEILQEYLEIS 235 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456677788888888888887754
No 38
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=96.61 E-value=0.34 Score=42.79 Aligned_cols=199 Identities=9% Similarity=0.080 Sum_probs=92.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhh
Q psy18202 125 HSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLI 203 (357)
Q Consensus 125 d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~ 203 (357)
+.-|..+..+++.=...++.+......=+....+++..+..++..+.. ..+.+ +..++..+-...+.++..+.. ++
T Consensus 17 ~~g~~~l~~~~~~g~~~~~el~~f~~eRa~iE~eYak~L~kLa~~~~~--~~~~gs~~~~w~~~~~~~e~~a~~h~~-~a 93 (276)
T 2v0o_A 17 NSGFDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLAKSASN--YSQLGTFAPVWDVFKTSTEKLANCHLD-LV 93 (276)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SCCCSSSGGGHHHHHHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 334555544444444444444444433334445566666666666532 22322 444455555555555555443 44
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------HHHhhccCCCCCCCCCCCccc
Q psy18202 204 EPFHEHNSHPMKDYLMYIDAVKQVLAR----RDVIQAEHDMCGEELQKKTAE-------KEQLTNKDSDSSSPTSSTATS 272 (357)
Q Consensus 204 ~~~~~~l~~~l~~~~~~~~a~k~~l~~----R~~~~~~~~~~~~~l~kk~~~-------~~kL~~~~~~~~~~~~~~~~~ 272 (357)
+.+. .+.++|..+.......+.-+.. -.+++..++.+...+.|.+.. .+++... +.+
T Consensus 94 ~~l~-~~~~~l~~~~~~~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak~~Y~~~c~e~e~~~~~--~~s--------- 161 (276)
T 2v0o_A 94 RKLQ-ELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKE--GAT--------- 161 (276)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCC---------
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC---------
Confidence 4442 4455665555444332211110 012333444444444444432 2222211 000
Q ss_pred CCCcccccCCcc--HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 273 STNSYSLWKSTS--EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAY 345 (357)
Q Consensus 273 ~~~g~~~~~~~~--~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~ 345 (357)
+ +..+ ..|+.+++.+....-.....+..+++.--..+...++.+...|..-|+.+|..|+...-..
T Consensus 162 ---~----k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~~~~~ 229 (276)
T 2v0o_A 162 ---Q----REIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEI 229 (276)
T ss_dssp ---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0000 1334444444333333444444444333344556778888999999999999999765543
No 39
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=96.61 E-value=0.37 Score=43.17 Aligned_cols=144 Identities=8% Similarity=0.040 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHH--------------HHHHHHH
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDA-VKQVLARRDVIQAE--------------HDMCGEE 244 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a-~k~~l~~R~~~~~~--------------~~~~~~~ 244 (357)
+..++..+-..++.++..+.. +++.+...+.++|..+...... -|.+...-.+++.. |....+.
T Consensus 74 ~~~aw~~~~~~~e~~a~~h~~-~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e 152 (305)
T 2efl_A 74 SCKAFISNLNEMNDYAGQHEV-ISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKE 152 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666554 5555555666666666555442 22222222233333 3344444
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHH-----------
Q psy18202 245 LQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTAN----------- 313 (357)
Q Consensus 245 l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~----------- 313 (357)
+++++...++.... + + ..+.++++++.+.......++.++.+|....
T Consensus 153 ~e~a~~~~~~~~~~-----~-----------~------~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~ 210 (305)
T 2efl_A 153 ADRAQQYFEKMDAD-----I-----------N------VTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYY 210 (305)
T ss_dssp HHHHHHHHHHHHHC-----T-----------T------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-----c-----------c------ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333211 0 0 1123455555555555444444444433221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 314 ----NHLRSDLERWRLEKKNDLKKILLKIADQQIAYY 346 (357)
Q Consensus 314 ----~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~ 346 (357)
-.+...++.+...+..-|+.+|..|+.......
T Consensus 211 ~~~~~~~~~~lQ~le~~r~~~lk~~l~~~~~~~~~~~ 247 (305)
T 2efl_A 211 HTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQVI 247 (305)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223356778888999999999999998765443
No 40
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=96.51 E-value=0.45 Score=42.95 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHh--hCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTW--AGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLM 219 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l--~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (357)
.+++..+..++..+... +..|.+ +..++..+-..++.++..+.. +++.+...+.++|..+..
T Consensus 60 ~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~i~~e~e~~a~~H~~-~a~~L~~~v~~~l~~~~~ 124 (312)
T 3abh_A 60 KAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLE-VKASLMNDDFEKIKNWQK 124 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45666666666655431 233433 777777777777777777665 666665566677765544
No 41
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=96.50 E-value=0.5 Score=43.42 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHh--hCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTW--AGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLM 219 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l--~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (357)
.+++..+..++..+... +..|.+ +..++..+-..++.++..+.. +++.+...+..+|..+..
T Consensus 60 ~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~l~~e~e~~a~~H~~-la~~L~~~v~~~l~~~~~ 124 (350)
T 3aco_A 60 KAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLE-VKASLMNDDFEKIKNWQK 124 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45666666666655432 123333 777777777777777777665 665565566666665543
No 42
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=96.41 E-value=0.49 Score=42.32 Aligned_cols=168 Identities=10% Similarity=0.063 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHhh------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHH-HHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTWA------GYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAV-KQVLA 229 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l~------~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~-k~~l~ 229 (357)
.+++..+..++..+.... ..+..+..++..+-...+.++..+.. +++.+...+.++|..+....... |....
T Consensus 38 ~eYak~L~kLakk~~~~~~~~~~~~~~~t~~~~w~~~l~~~e~~a~~h~~-~a~~L~~~v~~~l~~~~~~~~~~rK~~~~ 116 (301)
T 2efk_A 38 QAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQREL-VAENLSVRVCLELTKYSQEMKQERKMHFQ 116 (301)
T ss_dssp HHHHHHHHHHHHHHSCC-------CTTSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555543210 01223566666666667777766555 55555556667776665554443 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhH
Q psy18202 230 RRDVIQAEHDMCGEELQKKTAE--------------KEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAI 295 (357)
Q Consensus 230 ~R~~~~~~~~~~~~~l~kk~~~--------------~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i 295 (357)
.-.++..++..+...+.+.+.. ..+.... + + ..+..+++++.++
T Consensus 117 ~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~-----~-----------~------~s~~~~eK~~~k~ 174 (301)
T 2efk_A 117 EGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQD-----I-----------N------ATKADVEKAKQQA 174 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----T-----------T------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----c-----------c------cCHHHHHHHHHHH
Confidence 3333344444444444444332 2222111 0 0 1123445555555
Q ss_pred hHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 296 PKLTSQLEICDEKLQTA---------------NNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQ 347 (357)
Q Consensus 296 ~~le~~~~~~~~~~~~i---------------~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~ 347 (357)
......++.+..+|... -..+...++.+...+..-|+.+|..|+........
T Consensus 175 ~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ~lee~r~~~lk~~l~~~~~~~~~~~~ 241 (301)
T 2efk_A 175 HLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVP 241 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555555454443221 11234566777788888999999999987665543
No 43
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=96.13 E-value=0.68 Score=41.23 Aligned_cols=184 Identities=11% Similarity=0.116 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHH-h-hCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHH--------HHHH
Q psy18202 157 KDYVSEAHQFAIVLNT-W-AGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYI--------DAVK 225 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~-l-~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~a~k 225 (357)
.+++..+..++..+.. + ...+.+ +..++..+-..++.++..+.. ++..+...+.++|..+.... ..-|
T Consensus 39 ~~Yak~L~kL~~~~~~~~~~~~~~gs~~~aw~~~~~~~e~~a~~h~~-~a~~l~~~v~~~l~~~~~e~~~k~~~~~kerK 117 (290)
T 3i2w_A 39 KGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMK-IKDNLCNDVNSQIKTWQKENYHHTLMQIKERK 117 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHCCEETTEEHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 4455555555554432 2 123333 677777777777777777665 66666567778887776543 2224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCCCCCCcccCCCcccccCC----c-cHHHHHHHHhhHhHHH
Q psy18202 226 QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDS-DSSSPTSSTATSSTNSYSLWKS----T-SEDRLEKLSTAIPKLT 299 (357)
Q Consensus 226 ~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~-~~~~~~~~~~~~~~~g~~~~~~----~-~~~ki~~l~~~i~~le 299 (357)
.+...=.+++..+......+.+.+...+++-.... -+..-..........+.-+.+. . -..++.+.+.+....-
T Consensus 118 ~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~v 197 (290)
T 3i2w_A 118 DLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAI 197 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555666677777777776554332200 0000000000000000000000 0 0144555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 300 SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 300 ~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
........+++.--..+...++.+...|..-|+.+|..|+..
T Consensus 198 ~~~n~~~~~~~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~ 239 (290)
T 3i2w_A 198 AEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSC 239 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554455566788888999999999999999865
No 44
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=95.96 E-value=0.93 Score=41.30 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHh-h-CCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTW-A-GYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLM 219 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l-~-~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (357)
.+++..+..++..+... + ..+.+ +..++..+-..++.++..+.. +++.+...+.++|..+..
T Consensus 51 ~eYak~L~kLakk~~~~~~~~~~~gtl~~aw~~~~~e~e~~a~~H~~-~a~~L~~~v~~~l~~~~~ 115 (337)
T 2x3v_A 51 KAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVSELHQE-VKNSLLNEDLEKVKNWQK 115 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44555555555544332 1 22333 666777777777777766655 555555556666666544
No 45
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=95.34 E-value=1.1 Score=38.03 Aligned_cols=189 Identities=13% Similarity=0.141 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG------YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~------~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
++++.+.+..+........+.-+.+..+...|-.++..+|. .-.+|+.+|-++++....+..-++. ....+..
T Consensus 22 meqfnP~l~nlv~lg~~Y~kAl~a~~~A~~~y~dA~~Kige~A~~S~~skeLG~vL~qis~~hR~i~~~le~-~~k~f~~ 100 (222)
T 3ok8_A 22 MEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEV-VVQTFHG 100 (222)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45555555555555555444444444444444444444432 2234888888888887777665544 3333444
Q ss_pred hcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHH
Q psy18202 209 HNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDR 287 (357)
Q Consensus 209 ~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~k 287 (357)
.+..||..-+. +..-+.+. +.....+|....+.|.|...++.|+...+. + ...|
T Consensus 101 elI~pLE~k~e~D~k~i~~~---~K~y~~e~k~~~~~leK~~~elkK~~rksq-k---------------------~~~k 155 (222)
T 3ok8_A 101 DLLQHMEKNTKLDMQFIKDS---CQHYEIEYRHRAANLEKCMSELWRMERKRD-K---------------------NARE 155 (222)
T ss_dssp HTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-T---------------------THHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHhhhhhc-c---------------------ChHH
Confidence 55555554444 23333333 344666778888889999988888765421 1 1122
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERW--RLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF--~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
....|.....+++....+ ...+.+.+|=.|| --+|.-.+..-+..|-..-....+..+..|.
T Consensus 156 ---~~e~v~~~q~el~~f~~~--s~r~Al~EErRRYcFL~ekhc~~~~~~~~~h~k~~~~L~~kl~~W~ 219 (222)
T 3ok8_A 156 ---MKESVNRLHAQMQAFVSE--SKRAAELEEKRRYRFLAEKHLLLSNTFLQFLGRARGMLQNRVLLWK 219 (222)
T ss_dssp ---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhh
Confidence 122222222222222222 2334556777775 4566666666677776666777777888885
No 46
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=94.35 E-value=2.9 Score=37.82 Aligned_cols=176 Identities=13% Similarity=0.098 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHh-h-CCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHH------HHHH--
Q psy18202 157 KDYVSEAHQFAIVLNTW-A-GYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYI------DAVK-- 225 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l-~-~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~a~k-- 225 (357)
.+++..+..++..+... + ..+.+ +..++..+-...+.++..+.. +++.+...+..+|..+.... ..+|
T Consensus 51 ~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~-~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~ 129 (320)
T 3m3w_A 51 KAYAQQLADWARKWRGAVEKGPQYGTLEKAWHAFFTAAERLSELHLE-VREKLHGPDSERVRTWQRGAFHRPVLGGFRAS 129 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTHHHHHHHHHHHHHTC-----CCHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555556666544221 1 23433 777888887778888877666 66666666777777665322 1112
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhcc--CCCCCCCCCCCcccCCCcccccCCcc-----HHHHHHH
Q psy18202 226 -QVLARRDVIQAEHDMCGEELQKKTAEKEQ------LTNK--DSDSSSPTSSTATSSTNSYSLWKSTS-----EDRLEKL 291 (357)
Q Consensus 226 -~~l~~R~~~~~~~~~~~~~l~kk~~~~~k------L~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~ki~~l 291 (357)
.+...=.+++..+....+.+.+.+...++ .... ...++.+ ...+.-+-+... ...+.+.
T Consensus 130 K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~~~~d~-------~~s~ke~~K~~~k~~k~~~~~~~a 202 (320)
T 3m3w_A 130 RAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADS-------SMSQEQLRKLQERVGRCTKEAEKM 202 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSC-------CC---CCSSSSSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22111122333444444444444443221 1100 0000000 000111111110 1445555
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 292 STAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 292 ~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
+.+....-........+|..--..+...++.++..|..-|+++|..|+.
T Consensus 203 ~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~ 251 (320)
T 3m3w_A 203 KTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQ 251 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555565665444556678888999999999999999986
No 47
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=93.77 E-value=3.5 Score=36.67 Aligned_cols=122 Identities=11% Similarity=0.172 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKD 259 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~ 259 (357)
+..++..+-..++.++..... ++..+...+..+|+.|..--...++ ...++.+++...+.| +.....
T Consensus 120 l~~~W~~v~~e~e~~a~~H~~-la~~L~~ev~~pL~~~~e~~~~~~e----~~~l~~~L~~~ak~l-------e~~~kk- 186 (287)
T 3g9g_A 120 LRNVWDTVIEELKSDLKSSTE-YYNTLDQQVVRELKESVENNTSWRE----SKDLHSKLSKNAASI-------EHYSKN- 186 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHCSSSSCHHHHH----HHHHHHHHHHHHHHH-------HHCSSC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccHHHHH----HHHHHHHHHHHHHHH-------HHHHhh-
Confidence 667777777777777777665 6666666677777776532112222 122233333333333 222111
Q ss_pred CCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 260 SDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
. +....++.+...++.=...+-+-++.++++|..-|+++|..|+
T Consensus 187 ----~--------------------------------~a~~~le~a~~qWes~aP~~fe~fQ~lEEeRL~~Lkd~L~~y~ 230 (287)
T 3g9g_A 187 ----N--------------------------------ENSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQ 230 (287)
T ss_dssp ----C--------------------------------SCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----H--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011245555666655566677788888999999999999999
Q ss_pred HHHHHHHHHHH
Q psy18202 340 DQQIAYYQQRS 350 (357)
Q Consensus 340 ~~qi~~~~~~~ 350 (357)
...-.++.+..
T Consensus 231 ~~~sd~~~~~~ 241 (287)
T 3g9g_A 231 TSFSDYLLNTT 241 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888877644
No 48
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=80.17 E-value=11 Score=26.21 Aligned_cols=37 Identities=30% Similarity=0.280 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 220 YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 220 ~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
.+.||-+-|++|-+ -.+..++..|+.-+...+.|..|
T Consensus 4 llSAVeDKLRrrl~--E~~~q~qaEl~sLrrT~~EL~~G 40 (78)
T 3iv1_A 4 LISAVSDKLRWRMK--EEMDRAQAELNALKRTEEDLKKG 40 (78)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHhh
Confidence 45677787877733 34455556666666666666654
No 49
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=78.69 E-value=30 Score=29.47 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHH
Q psy18202 144 AFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYI 221 (357)
Q Consensus 144 ~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 221 (357)
.+.+.+.+|++..+.+..++..+|......+..-.. ... =..++++.++++.++.. + ++....|....
T Consensus 20 e~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~e-dddl~DIsdklgvLl~e-~--------ge~e~~~a~~~ 89 (234)
T 3plt_A 20 ELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADN-DDDVSDVTDKLGVLIYE-L--------GELQDQFIDKY 89 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHH-H--------HHHHHHHHHHH
Confidence 456777788888888888887777654332211110 011 12455666666655443 2 33333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHH------hhH
Q psy18202 222 DAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLS------TAI 295 (357)
Q Consensus 222 ~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~------~~i 295 (357)
+..+..|+. ..+.+..++-.|..+++|. ++|.+|+ .+|
T Consensus 90 d~yR~~LK~-------IR~~E~svqp~R~~R~~l~-----------------------------~~I~kLk~k~P~s~kl 133 (234)
T 3plt_A 90 DQYRVTLKS-------IRNIEASVQPSRDRKEKIT-----------------------------DEIAHLKYKDPQSTKI 133 (234)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHH-------HHHHHHHhhHHHHHHHHHH-----------------------------HHHHHHhccCCCCchH
Confidence 333433332 1223344555555555543 4566666 456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 296 PKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRS 350 (357)
Q Consensus 296 ~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~ 350 (357)
..+++++..++.+. -..-..|..+ +...+|+.+.--....+++.+|++
T Consensus 134 ~~LeqELvraEae~----lvaEAqL~n~---kR~~lKEa~~~~f~Al~E~aEK~~ 181 (234)
T 3plt_A 134 PVLEQELVRAEAES----LVAEAQLSNI---TREKLKAAYSYMFDSLRELSEKFA 181 (234)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----hHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555543 1111233333 345677777666666666666653
No 50
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=77.80 E-value=23 Score=28.87 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHH
Q psy18202 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEK 308 (357)
Q Consensus 242 ~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~ 308 (357)
.+.+..++.++..|... .++|+++|+++..+|.++..++.....+
T Consensus 91 r~ql~akr~EL~aL~~a----------------------~~~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 91 RQQLISKRYEYNALLTA----------------------SSPDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHTS----------------------SSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC----------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788887765 2256789999999998888777654443
No 51
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=76.76 E-value=53 Score=31.26 Aligned_cols=11 Identities=0% Similarity=0.344 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy18202 137 NLYEKISAFEK 147 (357)
Q Consensus 137 ~l~~~l~~l~~ 147 (357)
.|...|.+|.+
T Consensus 54 eYAk~L~kLak 64 (486)
T 3haj_A 54 AYAQQLTEWAR 64 (486)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 52
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.32 E-value=1.4e+02 Score=35.77 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=25.3
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy18202 289 EKLSTAIPKLTSQLEICDEKLQTANNHL---RSDLERWRLEKKNDLKKILL 336 (357)
Q Consensus 289 ~~l~~~i~~le~~~~~~~~~~~~i~~~~---~~El~rF~~~k~~~l~~~l~ 336 (357)
+++..+.+.++.+++.++.+++...+.+ ..|-.||... ..+++..+.
T Consensus 2052 ~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~-~~~l~~~~~ 2101 (3245)
T 3vkg_A 2052 ATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ-SENFNTQMS 2101 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH-HHHHHHHHH
Confidence 3333344444555555555555555443 4788888755 455554333
No 53
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=75.18 E-value=6.2 Score=22.31 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=10.6
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQT 311 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~ 311 (357)
|.+|+.+++++-.+...++.+...
T Consensus 2 MnQLEdKVEell~~~~~le~EV~R 25 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHH
Confidence 344444444444444444444333
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.59 E-value=32 Score=33.46 Aligned_cols=14 Identities=0% Similarity=0.003 Sum_probs=4.9
Q ss_pred HhHHHHHHHHHHHH
Q psy18202 295 IPKLTSQLEICDEK 308 (357)
Q Consensus 295 i~~le~~~~~~~~~ 308 (357)
+++.++++..++++
T Consensus 553 ~~~~~~~~~~l~~e 566 (597)
T 3oja_B 553 LDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHH
Confidence 33333333333333
No 55
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=69.64 E-value=11 Score=21.65 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=9.5
Q ss_pred HHHHHhhHhHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKL 309 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~ 309 (357)
|.+|+.+++++-.+...++.+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV 24 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHH
Confidence 4444444444444433333333
No 56
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=69.07 E-value=12 Score=23.95 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRS 318 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~ 318 (357)
..|.+|+.+|+.+|.++...+.++..++..+..
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 568888889999998888888887777766544
No 57
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.35 E-value=8.3 Score=22.24 Aligned_cols=24 Identities=8% Similarity=0.275 Sum_probs=10.9
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQT 311 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~ 311 (357)
|.+|+.+++++..+...++.+..+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~R 26 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVAR 26 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHH
Confidence 344454554444444444444433
No 58
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=66.62 E-value=3.7 Score=20.84 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHH
Q psy18202 56 CRMKLLDQFLRR 67 (357)
Q Consensus 56 ~R~~~L~~fL~~ 67 (357)
-|+..|++||.+
T Consensus 5 aRk~SLqRFleK 16 (21)
T 3ogl_Q 5 ARRASLHRFLEK 16 (26)
T ss_pred hHHHHHHHHHHH
Confidence 478888888875
No 59
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=64.49 E-value=14 Score=20.92 Aligned_cols=25 Identities=12% Similarity=0.225 Sum_probs=11.6
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQT 311 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~ 311 (357)
||.+|+.+++++-.+-..++.+...
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3445555555544444444444433
No 60
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=57.95 E-value=26 Score=22.33 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=11.4
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTAN 313 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~ 313 (357)
||++|..++..+..++..++++-.+.+
T Consensus 19 kVdqLssdV~al~~~v~~ak~eA~RAN 45 (52)
T 1jcd_A 19 KADQASNDANAARSDAQAAKDDAARAN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333
No 61
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=57.62 E-value=23 Score=20.01 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=9.9
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQ 310 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~ 310 (357)
+.+|+.+++++-.+-..++.+..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~ 24 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHH
Confidence 34444444444444444444333
No 62
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=57.61 E-value=1.1e+02 Score=27.50 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=34.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNH--------------LRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~--------------~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
..+++++.++..+..++..+..+|...... +...++.++..|..-|+++|..|+..
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~ 261 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH 261 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655555555554333222 23456667777788888888888765
No 63
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=57.30 E-value=23 Score=20.14 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=10.2
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKL 309 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~ 309 (357)
++.+|+.+++++=.+-+.++.+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHH
Confidence 34455555544444444333333
No 64
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=57.27 E-value=14 Score=20.92 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=7.9
Q ss_pred HHHHHHHhhHhHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEI 304 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~ 304 (357)
+||+.|-.+-.+++.++..
T Consensus 7 ~kVEeLl~~n~~Le~EV~R 25 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444433
No 65
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=57.08 E-value=3.7 Score=21.19 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q psy18202 57 RMKLLDQFLRR 67 (357)
Q Consensus 57 R~~~L~~fL~~ 67 (357)
|+..|++||.+
T Consensus 1 Rk~SLqRFleK 11 (22)
T 3ogk_Q 1 RRASLHRFLEK 11 (26)
T ss_pred CchhHHHHHHH
Confidence 34555666543
No 66
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=56.35 E-value=1.1e+02 Score=27.20 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=33.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTAN--------------NHLRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~--------------~~~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
..+++++.++..+..++..+..+|.... ..+...++.+...|..-|+++|..|+..
T Consensus 183 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~le~~Rl~~lk~~l~~~~~~ 252 (337)
T 2x3v_A 183 EQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRH 252 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566555555555555443322 2233456667777888888888888774
No 67
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=55.79 E-value=51 Score=27.69 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=29.4
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILL 336 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~ 336 (357)
.++..|+.++++++...-.+..+++.+.+.+.+|.......-...+-.-|+
T Consensus 66 ~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LL 116 (213)
T 4ani_A 66 AQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLL 116 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666666666666666666666555444444433333
No 68
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=55.55 E-value=94 Score=29.60 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCcc--HHHHHHHHhhHhHH
Q psy18202 221 IDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTS--EDRLEKLSTAIPKL 298 (357)
Q Consensus 221 ~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~ki~~l~~~i~~l 298 (357)
++.+.++-..|..++.+.+.+....+....+..++.... ...+ ..++..+..+|.++
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~---------------------~~~~~l~~~~~~l~~~i~~l 90 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAK---------------------EDAKDLIAEKEKLSNEKKEI 90 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------------------ccHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666555555544444444443320 0111 16677777777777
Q ss_pred HHHHHHHHHHHHHH
Q psy18202 299 TSQLEICDEKLQTA 312 (357)
Q Consensus 299 e~~~~~~~~~~~~i 312 (357)
+.++..++.++..+
T Consensus 91 e~~~~~~~~~~~~~ 104 (485)
T 3qne_A 91 IEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665443
No 69
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=55.43 E-value=72 Score=24.87 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=31.1
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18202 208 EHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLT 256 (357)
Q Consensus 208 ~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~ 256 (357)
..|...+.+-..-.+.++..+..-..+...|..+++.++....++..|.
T Consensus 48 ~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~ 96 (158)
T 3tul_A 48 KEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLD 96 (158)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3555666666667777777777777777666666666666555555544
No 70
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.37 E-value=46 Score=22.66 Aligned_cols=21 Identities=5% Similarity=0.237 Sum_probs=9.5
Q ss_pred HHHHHHhhHhHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDE 307 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~ 307 (357)
.|+.++.+|.+.+..+..++.
T Consensus 41 ~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 71
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=55.28 E-value=32 Score=20.70 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=23.6
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNH 315 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~ 315 (357)
.+|+++..+|+..++++..++.+...+.+.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888888888888888888877665544
No 72
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=53.43 E-value=17 Score=20.71 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=12.0
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTA 312 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i 312 (357)
||.+|+.+++++=.+-..++.+...+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 44555555555544444444444333
No 73
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=52.68 E-value=1.2e+02 Score=28.67 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccH--HHHHHHHhhHhHH
Q psy18202 221 IDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSE--DRLEKLSTAIPKL 298 (357)
Q Consensus 221 ~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~ki~~l~~~i~~l 298 (357)
++.+.++-..|..++.+.+.+....+....+..++.... ...+. .++..+..+|.++
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~---------------------~~~~~l~~~~~~~~~~~~~~ 88 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG---------------------EPVDELLAKSREIVKRIGEL 88 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---------------------CCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------ccHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655555554444444443320 01111 6677777777777
Q ss_pred HHHHHHHHHHHHH
Q psy18202 299 TSQLEICDEKLQT 311 (357)
Q Consensus 299 e~~~~~~~~~~~~ 311 (357)
+.++..++.++..
T Consensus 89 ~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 89 ENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666544
No 74
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=52.27 E-value=1.2e+02 Score=28.36 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=13.4
Q ss_pred eecchhhHHHHHHHHHHh
Q psy18202 10 VRRRYNDFVWLHNKLVET 27 (357)
Q Consensus 10 V~RRysdF~~L~~~L~~~ 27 (357)
+-..+.||..+-..|...
T Consensus 139 ~P~Twdel~~~a~~l~~~ 156 (471)
T 3mq9_A 139 PPKTWEEIPALDKELKAK 156 (471)
T ss_dssp CCSBGGGHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 346788888888888764
No 75
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=51.52 E-value=32 Score=19.59 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=9.8
Q ss_pred HHHHHhhHhHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKL 309 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~ 309 (357)
+.+|+.+++++-.+...++.+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv 24 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHH
Confidence 4445555544444444333333
No 76
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.57 E-value=1.2e+02 Score=29.06 Aligned_cols=12 Identities=8% Similarity=0.271 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q psy18202 131 FSQYISNLYEKI 142 (357)
Q Consensus 131 ~~~~~~~l~~~l 142 (357)
++..+++.+..+
T Consensus 51 LQglLdkqErDl 62 (562)
T 3ghg_A 51 MKGLIDEVNQDF 62 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHhhcCcH
Confidence 444455555444
No 77
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=50.41 E-value=31 Score=19.59 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=8.4
Q ss_pred HHHHHhhHhHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDE 307 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~ 307 (357)
|.+|+.+++++-.+-..++.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~ 22 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLAN 22 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHH
Confidence 44444444444333333333
No 78
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=49.85 E-value=1.3e+02 Score=26.00 Aligned_cols=64 Identities=6% Similarity=0.105 Sum_probs=39.7
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHhhCCchhHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVS-------EAHQFAIVLNTWAGYEPQLSSVI 184 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~-------~~~~~~~~~~~l~~~E~~l~~~l 184 (357)
++...|-++++-..-.+|...+..+...+......-..++. ...++|.++..++.....+...+
T Consensus 26 mk~~~P~~e~lv~~g~ky~~al~~~~~a~~af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~hr~ie~~l 96 (253)
T 2d1l_A 26 MKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRHRSIEAKL 96 (253)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888777788888887776666655555544443 35677877776654433333333
No 79
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=48.94 E-value=80 Score=23.51 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=30.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKK 328 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~ 328 (357)
.+|..|...+...|..+..+...|......+..++.+....+.
T Consensus 45 ~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re 87 (112)
T 1x79_B 45 HQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSRE 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777777776655543
No 80
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=48.28 E-value=26 Score=19.93 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=7.1
Q ss_pred HHHHHHHhhHhHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLE 303 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~ 303 (357)
+|++.|-.+-.+++.++.
T Consensus 8 dKVEeLl~~n~~Le~EV~ 25 (34)
T 1uo4_A 8 DKGEEILSKLYHIENELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 344444333333343333
No 81
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.57 E-value=43 Score=21.32 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=24.1
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHL 316 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~ 316 (357)
+..-++.|+.+.++++.+++.+..+.+..+..+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888777776665543
No 82
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=44.47 E-value=1.1e+02 Score=28.43 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHH
Q psy18202 221 IDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTS 300 (357)
Q Consensus 221 ~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~ 300 (357)
++.+.++-..|..++.+.+.+....++...+..++.....+ ...-..++..+..+|.+++.
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~-------------------~~~l~~~~~~~~~~~~~~~~ 89 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKD-------------------TTEIQNRVKELKEEIDRLEE 89 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSC-------------------TTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-------------------HHHHHHHHHHHHHHHHHHHH
Confidence 46666666667666666555444443333333333221000 00112677788888888888
Q ss_pred HHHHHHHHHHHH
Q psy18202 301 QLEICDEKLQTA 312 (357)
Q Consensus 301 ~~~~~~~~~~~i 312 (357)
++..++.++..+
T Consensus 90 ~~~~~~~~~~~~ 101 (425)
T 2dq3_A 90 ELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776544
No 83
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=43.75 E-value=1.5e+02 Score=25.26 Aligned_cols=31 Identities=3% Similarity=-0.012 Sum_probs=12.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 294 AIPKLTSQLEICDEKLQTANNHLRSDLERWR 324 (357)
Q Consensus 294 ~i~~le~~~~~~~~~~~~i~~~~~~El~rF~ 324 (357)
.+..++..+......++.....+..|+....
T Consensus 133 ~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 133 EMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444433
No 84
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=40.85 E-value=1e+02 Score=22.29 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=17.0
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLE 326 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~ 326 (357)
.+.+|+.+|..+|.....++.--+. -..+..|+++|...
T Consensus 55 EI~~L~~eI~~LE~iqs~aK~LRnK-A~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 55 EIARLSKEIDQLEKMQNNSKLLRNK-AVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHH
Confidence 3444444444444433333321100 11234677777654
No 85
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.69 E-value=2.6e+02 Score=26.73 Aligned_cols=20 Identities=0% Similarity=0.006 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy18202 128 FEQFSQYISNLYEKISAFEK 147 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~ 147 (357)
++++++.+++++..-+.+..
T Consensus 66 INELKnqLEdlsKnsKdseq 85 (562)
T 3ghg_A 66 INKLKNSLFEYQKNNKDSHS 85 (562)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchhHHH
Confidence 34444444444333333333
No 86
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=38.63 E-value=42 Score=18.29 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=8.3
Q ss_pred HhhHhHHHHHHHHHHHHHHHH
Q psy18202 292 STAIPKLTSQLEICDEKLQTA 312 (357)
Q Consensus 292 ~~~i~~le~~~~~~~~~~~~i 312 (357)
+.++..+..-++.++.+++.+
T Consensus 5 ee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444333
No 87
>1s28_A ORF1; type III chaperone; 3.00A {Pseudomonas syringae PV} SCOP: d.198.1.1
Probab=38.18 E-value=19 Score=27.47 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHhCCCCCCCCCCCcc
Q psy18202 15 NDFVWLHNKLVETLPSHIIPPLPEKH 40 (357)
Q Consensus 15 sdF~~L~~~L~~~~p~~~iPplP~K~ 40 (357)
+.|..|-+-|.+.|+ .|++|+|+
T Consensus 5 n~fd~lid~laK~Y~---mP~~P~kk 27 (132)
T 1s28_A 5 NSFDRLIDGLAKDYG---MPGFPEKK 27 (132)
T ss_dssp HHHHHHHHHHHHHHC---CCBCCCCC
T ss_pred hhHHHHHHHHHHhcC---CCCCCccc
Confidence 469999999999998 89999994
No 88
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=38.14 E-value=2.3e+02 Score=25.64 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy18202 125 HSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFA 167 (357)
Q Consensus 125 d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~ 167 (357)
...+..++.+++++....+.+......+......++..+.+++
T Consensus 27 E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~ 69 (385)
T 2q13_A 27 EEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYE 69 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677778888877777777766666666666666665543
No 89
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=37.72 E-value=86 Score=25.34 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=20.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLR 317 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~ 317 (357)
+.+.+|+.+|+.||+++...+.++..+.+.+.
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777766666666655555543
No 90
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=35.62 E-value=72 Score=19.11 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=15.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQ 310 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~ 310 (357)
.|+..|+....+||+.+..++.+-.
T Consensus 10 ~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4566666666677766666665543
No 91
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=35.20 E-value=94 Score=23.27 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHH
Q psy18202 236 AEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEK 308 (357)
Q Consensus 236 ~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~ 308 (357)
.+++.....|++-+.++..+... .+.+.+.++..+++.++.++..++..
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~r------------------------gd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLV------------------------EAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTT------------------------TCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC------------------------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655544322 23467778888888777777766554
No 92
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=34.19 E-value=15 Score=23.98 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=10.6
Q ss_pred HHHHHHHhcccccC
Q psy18202 344 AYYQQRSDRGNCNC 357 (357)
Q Consensus 344 ~~~~~~~~~W~~~~ 357 (357)
...++-+..|+|.|
T Consensus 23 aqlekelqawncic 36 (80)
T 2lq4_p 23 AQLEKELQAWNCIC 36 (80)
T ss_dssp HHHHHHHTTTCSSC
T ss_pred HHHHHHHHHHhhhc
Confidence 34567788999988
No 93
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=34.06 E-value=1.8e+02 Score=23.26 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=34.7
Q ss_pred HHHHHHHhhHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLE----ICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIA 344 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~----~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~ 344 (357)
+.++.+-.+|.+++.++. .+.++.+.|......++...+.. ...+...|..||+.+..
T Consensus 16 ~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~-i~~l~~~l~~y~e~~r~ 77 (171)
T 2p2u_A 16 RQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLAR-RKELEDGVATFATLNKT 77 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHH
Confidence 334444444444443333 23355666666667777777644 67888888888887754
No 94
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=33.78 E-value=1.8e+02 Score=24.26 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=30.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKK 333 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~ 333 (357)
..+..++.+|.+++.++..+++++-+ +..|+++|++...++...
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR----~~AEfeN~RkR~~rE~e~ 102 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLR----LYADFENFRRRTRQEMEA 102 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 56778888888888888877777643 446777776655555444
No 95
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=32.54 E-value=1.4e+02 Score=21.42 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 220 YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 220 ~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
....++..+.....+..+.......+..-...-.+|..
T Consensus 34 d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~ 71 (119)
T 3uun_A 34 DVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44566666666666666666555555555555555543
No 96
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=30.77 E-value=2.7e+02 Score=24.28 Aligned_cols=44 Identities=9% Similarity=0.072 Sum_probs=20.0
Q ss_pred hcchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy18202 209 HNSHPMKDYLMYIDAVKQVLARR-DVIQAEHDMCGEELQKKTAEK 252 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l~~R-~~~~~~~~~~~~~l~kk~~~~ 252 (357)
.|.++|......+.-.+..++.- .......+.+...+.|+++..
T Consensus 98 ~~~~~L~~~~~e~ek~RK~~Ke~w~r~eKk~~dae~~l~KAK~~Y 142 (279)
T 3qwe_A 98 DYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQY 142 (279)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444333222111 112224455666677776643
No 97
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=30.03 E-value=2.2e+02 Score=23.12 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=17.1
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHH
Q psy18202 208 EHNSHPMKDYLMYIDAVKQVLARRDV 233 (357)
Q Consensus 208 ~~l~~~l~~~~~~~~a~k~~l~~R~~ 233 (357)
..+.+.+..|.+.+..+|--+..-..
T Consensus 101 arllekiqkyfQ~IEtlK~ql~nf~e 126 (294)
T 3caz_A 101 ARLLEKIQKYRQEIEEIKKEYKETDK 126 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 35677777777777777765554443
No 98
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.47 E-value=94 Score=18.25 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=19.3
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQ 310 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~ 310 (357)
++....|+.++..+|..+..++.++.
T Consensus 19 peelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 19 PEELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888877777666654
No 99
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.38 E-value=1.2e+02 Score=19.25 Aligned_cols=28 Identities=7% Similarity=0.162 Sum_probs=16.2
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTAN 313 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~ 313 (357)
.|+++|..++..|..+|..+..+...+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665544443
No 100
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=27.99 E-value=2.2e+02 Score=30.39 Aligned_cols=16 Identities=13% Similarity=0.027 Sum_probs=9.7
Q ss_pred cceeecchhhHHHHHH
Q psy18202 7 ECIVRRRYNDFVWLHN 22 (357)
Q Consensus 7 ~~~V~RRysdF~~L~~ 22 (357)
+|.++..|.+|..-+.
T Consensus 719 Gfp~R~~~~~F~~ry~ 734 (1184)
T 1i84_S 719 GFPNRIVFQEFRQRYE 734 (1184)
T ss_dssp SCCEEEEHHHHHHHTT
T ss_pred cCcccccHHHHHHHHH
Confidence 4556677777765443
No 101
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=27.63 E-value=1.7e+02 Score=20.92 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 220 YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 220 ~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
....++..+.....+..+.......+..-...-.+|..
T Consensus 34 d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~ 71 (118)
T 3uul_A 34 DVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMT 71 (118)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666766666666666666666655555556654
No 102
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.26 E-value=4.1e+02 Score=25.26 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 223 AVKQVLARRDVIQAEHDMCGEELQK 247 (357)
Q Consensus 223 a~k~~l~~R~~~~~~~~~~~~~l~k 247 (357)
.+.++-..|..++.+.+.++...+.
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~ 95 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEA 95 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333
No 103
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.23 E-value=1.5e+02 Score=20.31 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=4.6
Q ss_pred hhHhHHHHHHHHH
Q psy18202 293 TAIPKLTSQLEIC 305 (357)
Q Consensus 293 ~~i~~le~~~~~~ 305 (357)
.+|..++..++.+
T Consensus 48 kKiq~lE~eld~~ 60 (81)
T 1ic2_A 48 KKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 104
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=27.17 E-value=3.8e+02 Score=24.82 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=19.3
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHH
Q psy18202 174 AGYEPQLSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 174 ~~~E~~l~~~l~~~~~~~~~~~~~~ 198 (357)
...|.+|.+.|..++.|++.+..+.
T Consensus 200 ~~le~elA~~L~SLT~HyDqC~~l~ 224 (413)
T 4hpq_C 200 DQLEQELADFLKSFTDHFDKCSALS 224 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345568889999999999998553
No 105
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.12 E-value=1.3e+02 Score=19.59 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=12.9
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTA 312 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i 312 (357)
+++.|+.+-.+|+.++..++.+....
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544333
No 106
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.96 E-value=81 Score=17.04 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=12.7
Q ss_pred HHHHHhhHhHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEK 308 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~ 308 (357)
+..|+++|..+..++..++-+
T Consensus 4 iaalkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655544
No 107
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=26.95 E-value=23 Score=20.79 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=14.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEK 308 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~ 308 (357)
.||+.|+.+.+.+++++..++.+
T Consensus 11 kKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 11 RKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677776766666666655543
No 108
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.88 E-value=3.2e+02 Score=25.25 Aligned_cols=18 Identities=6% Similarity=0.049 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy18202 222 DAVKQVLARRDVIQAEHD 239 (357)
Q Consensus 222 ~a~k~~l~~R~~~~~~~~ 239 (357)
+.+.++-..|..++.+.+
T Consensus 28 ~~~~~~~~~~r~~~~~~~ 45 (421)
T 1ses_A 28 EALLALDREVQELKKRLQ 45 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555444433
No 109
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=26.81 E-value=3.6e+02 Score=24.51 Aligned_cols=61 Identities=8% Similarity=0.122 Sum_probs=37.7
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhhCCchhHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSE-AHQFAIVLNTWAGYEPQLS 181 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~-~~~~~~~~~~l~~~E~~l~ 181 (357)
..+.+.++.+..+.++.+...+..+......+.+....+... ...++..+..+|..-.+|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~l~ 237 (386)
T 4akv_A 176 IPTEHQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAIS 237 (386)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CCccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344566788888888888888888887777776655555443 2344444444443333333
No 110
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=26.46 E-value=1.6e+02 Score=20.23 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=11.5
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQ 310 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~ 310 (357)
.|+..++.+++.++..+..+..+++
T Consensus 48 kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 48 KKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 111
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.07 E-value=2e+02 Score=21.37 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=14.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTA 312 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i 312 (357)
.+++.|+.+|..|...++.+..+.+..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655555555554443
No 112
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.45 E-value=72 Score=16.61 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=11.3
Q ss_pred HHHHHHHhhHhHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEIC 305 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~ 305 (357)
.|-..|+++|..+|-++..+
T Consensus 7 qknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHh
Confidence 34455666666666655543
No 113
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.29 E-value=79 Score=16.31 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=11.9
Q ss_pred HHHHhhHhHHHHHHHHHHHHH
Q psy18202 289 EKLSTAIPKLTSQLEICDEKL 309 (357)
Q Consensus 289 ~~l~~~i~~le~~~~~~~~~~ 309 (357)
-+|+.++-++..++.+++++.
T Consensus 3 yqlkdevgelkgevralkdev 23 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHHHHH
Confidence 345556666666666555543
No 114
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=24.90 E-value=1.7e+02 Score=20.15 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTAS 196 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~ 196 (357)
...++..+..|...+..|...... .+...|...+..|...-..+...|..++..+...+.
T Consensus 25 ~~~i~~~l~~L~~~v~~L~~~W~G--~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~ 84 (99)
T 3zbh_A 25 SSNVTELIARLDQMSHTLQGIWEG--ASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSAT 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433332 222344444444433222344444444444444443
No 115
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=24.55 E-value=81 Score=21.45 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=23.4
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNH 315 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~ 315 (357)
++.++-|+.+|.+|++++..++.+.......
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667888888999988888888776555443
No 116
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.68 E-value=4.8e+02 Score=24.84 Aligned_cols=21 Identities=29% Similarity=0.186 Sum_probs=10.3
Q ss_pred HHHHhhHhHHHHHHHHHHHHH
Q psy18202 289 EKLSTAIPKLTSQLEICDEKL 309 (357)
Q Consensus 289 ~~l~~~i~~le~~~~~~~~~~ 309 (357)
+.++.++.+++..++..++..
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHH
Confidence 344455555555555444444
No 117
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=23.30 E-value=1.6e+02 Score=24.18 Aligned_cols=42 Identities=7% Similarity=0.176 Sum_probs=27.1
Q ss_pred HHHHHHHhhHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTS----QLEICDEKLQTANNHLRSDLERWRLEK 327 (357)
Q Consensus 286 ~ki~~l~~~i~~le~----~~~~~~~~~~~i~~~~~~El~rF~~~k 327 (357)
.++..|+.++.+++. ..-.+..+++.+.+.+.+|.......-
T Consensus 42 ~~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a 87 (197)
T 1dkg_A 42 EKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFA 87 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777663 556666667777777666665555443
No 118
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=23.27 E-value=1.5e+02 Score=22.45 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=15.3
Q ss_pred HHHHHHHHhhHhHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICD 306 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~ 306 (357)
.++|..|+.+|..++.++..++
T Consensus 67 ~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 67 SDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777776544
No 119
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.20 E-value=4.5e+02 Score=24.28 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=18.0
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHL 316 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~ 316 (357)
.|+.+-+.+|+++|.++..++.+++..+..+
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455567777777766666665544433
No 120
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.65 E-value=1.4e+02 Score=21.91 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=21.8
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHL 316 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~ 316 (357)
+++..|+.+|..|+.+...+......+...+
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l 36 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQL 36 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999888887776666555554443
No 121
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=22.62 E-value=1.4e+02 Score=25.65 Aligned_cols=26 Identities=4% Similarity=0.045 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 216 DYLMYIDAVKQVLARRDVIQAEHDMC 241 (357)
Q Consensus 216 ~~~~~~~a~k~~l~~R~~~~~~~~~~ 241 (357)
...+.+.++-+-+..|+.....++..
T Consensus 121 Rt~~iLSalINF~~FRE~~~~~~~e~ 146 (250)
T 2ve7_C 121 RTSRFLSGIINFIHFREACRETYMEF 146 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555544444333
No 122
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=22.07 E-value=47 Score=17.37 Aligned_cols=14 Identities=36% Similarity=0.702 Sum_probs=11.3
Q ss_pred CCCCCCCCCCcccc
Q psy18202 29 PSHIIPPLPEKHSL 42 (357)
Q Consensus 29 p~~~iPplP~K~~~ 42 (357)
||+--|+||+.+..
T Consensus 3 PG~P~P~LPpRPaN 16 (26)
T 1wa7_B 3 PGMPTPPLPPRPAN 16 (26)
T ss_dssp CCCCCCCCCCCTTS
T ss_pred CCCCCCCCCCCccc
Confidence 57788899988875
No 123
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=21.69 E-value=2e+02 Score=19.73 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=15.6
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy18202 291 LSTAIPKLTSQLEICDEKLQTANNHL 316 (357)
Q Consensus 291 l~~~i~~le~~~~~~~~~~~~i~~~~ 316 (357)
.+..|+.+|.++...+.++..++..+
T Consensus 42 ~EKTIDDLEDkL~~eKEK~k~i~eeL 67 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAKEENLNMHQML 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566666666666666665555554
No 124
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.23 E-value=1.6e+02 Score=21.29 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=24.8
Q ss_pred ccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q psy18202 283 TSEDRLEKLSTAIPKLTSQLEICDEKLQTANNH 315 (357)
Q Consensus 283 ~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~ 315 (357)
|...|..+|+.+|.+++.+++.....-+-+.+-
T Consensus 12 PpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km 44 (98)
T 2ke4_A 12 PPEQQRKRLQQQLEERSRELQKEVDQREALKKM 44 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455888999999999999888777765555443
No 125
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=21.18 E-value=3.7e+02 Score=22.65 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy18202 131 FSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTW 173 (357)
Q Consensus 131 ~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l 173 (357)
++.-+..++..+..+...++++++.-+.+..+...++.+...+
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f 61 (265)
T 2q12_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLT 61 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888889999999999999988888887777766655444
No 126
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.06 E-value=2.3e+02 Score=19.65 Aligned_cols=12 Identities=0% Similarity=0.254 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy18202 183 VIRQVSKAVDTT 194 (357)
Q Consensus 183 ~l~~~~~~~~~~ 194 (357)
.|..++..+...
T Consensus 70 ~L~~i~~~L~~~ 81 (98)
T 3gwk_C 70 LLEDINQQLLKV 81 (98)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
Done!