RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18202
(357 letters)
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 139 bits (352), Expect = 2e-38
Identities = 55/357 (15%), Positives = 113/357 (31%), Gaps = 69/357 (19%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHI-IPPLPEKHSLLEHLNRYSKEFILCRMKLLDQF 64
T V RY F WL+ +L+ S I IP LP+K R+ +EFI RM+ L +
Sbjct: 50 TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT----GRFEEEFIKMRMERLQAW 105
Query: 65 LRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNI-YTTMSLRH 123
+ R+ HPV+S + FL + + K ++ + L
Sbjct: 106 MTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVE 165
Query: 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQ--------FAIVLNTWAG 175
+ E ++ + + + +G +K + + +Q A V ++
Sbjct: 166 IEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGY 225
Query: 176 YEPQ-LSSVIRQVSKAVDTTASL---HKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARR 231
L+ I + K + ASL + E +Y ++ ++
Sbjct: 226 QGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLME----CNHEYKGFLGCFPDIIGTH 281
Query: 232 DVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKL 291
K EK + +KL
Sbjct: 282 ---------------KGAIEKVK--------------------------------ESDKL 294
Query: 292 STAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+ +++ + L++++ + + D ++ +QQ+ +Y+
Sbjct: 295 VATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYET 351
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 139 bits (351), Expect = 3e-38
Identities = 48/356 (13%), Positives = 110/356 (30%), Gaps = 68/356 (19%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFL 65
V RRY F WL+N+L+ +P LPEK + R+ ++FI R + L ++
Sbjct: 71 AASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQA----TGRFEEDFIEKRKRRLILWM 126
Query: 66 RRVTSHPVLSVNSHAIIFLTAK-LAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLRHH 124
+TSHPVLS FL+ ++ M K+ + + L+
Sbjct: 127 DHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDEMVGASFLLTFQIPTEHQDLQDV 186
Query: 125 HSEFEQFSQYISNLYEKISAFEKIGTRLYKER-KDYVSEAHQFAIVLNTWA--------G 175
+ F + + + + + + L ++ + E + +
Sbjct: 187 EDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPF 246
Query: 176 YEPQLSSVIRQVSKAVDTTASLH---KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRD 232
L+S I + + + + + + Y + ++ +
Sbjct: 247 CSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLD----TLSLYQGLLSNFPDIIHLQK 302
Query: 233 VIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLS 292
A+ +++S
Sbjct: 303 GAFAKVKES-----------------------------------------------QRMS 315
Query: 293 TAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+ + + + + L++++ + ++ D K ++ QQI +YQ+
Sbjct: 316 DEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQR 371
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur
genomics consortium, protein transport, transport; 1.70A
{Homo sapiens}
Length = 138
Score = 112 bits (281), Expect = 2e-30
Identities = 45/96 (46%), Positives = 57/96 (59%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
EF +E VRRRY DF+WL KL E P+ IIPPLPEK + + R++ +FI R K
Sbjct: 38 GEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKA 97
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKK 96
L +FL R+ HP L+ N IFLTA+ E S H
Sbjct: 98 LHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHAH 133
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 146
Score = 100 bits (250), Expect = 6e-26
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSL-----LEHLNRYSKEFIL 55
P F E VRRRY+DF WL N+L ++PPLP K + + FI
Sbjct: 40 PIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRGDEGIFEESFIE 98
Query: 56 CRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHS 98
R + L+QF+ ++ HP+ +FL + + + S
Sbjct: 99 ERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKS 141
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices,
proline rich loop, protein transport; NMR {Homo sapiens}
Length = 128
Score = 92.6 bits (230), Expect = 3e-23
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSH--IIPPLPEKHSL------LEHLNRYSKE 52
P F + V+RR++DF+ L+ KL E + I+PP PEK + + + S E
Sbjct: 33 PLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAE 92
Query: 53 FILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAK 87
F+ R L+++L+R+ +HP + + FL +
Sbjct: 93 FLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein;
HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP:
d.189.1.1 PDB: 1ocu_A*
Length = 162
Score = 93.5 bits (232), Expect = 4e-23
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETL-----PSHIIPPLPEKHSLLEHLNRYSKEFIL 55
P F VRRRY+DF + L++ + P ++P LP K L NR+S E I
Sbjct: 69 PSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILL---SNRFSNEVIE 125
Query: 56 CRMKLLDQFLRRVTSHPVLSVNSHA-IIFLTAK 87
R + L+ +++ V HP+L S + F+ A+
Sbjct: 126 ERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 158
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Length = 115
Score = 87.0 bits (216), Expect = 2e-21
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQF 64
+ R RY+ + LH +L + ++++P P K L + + R + L+++
Sbjct: 31 NGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPK-----KLFSLTPAEVEQRREQLEKY 85
Query: 65 LRRVTSHPVLSVNSHAIIFLTA 86
++ V P+L + FL
Sbjct: 86 MQAVRQDPLLGSSETFNSFLRR 107
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase;
1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Length = 154
Score = 85.4 bits (211), Expect = 3e-20
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
+E V RRY +F L+N L + P + +P K + + +FI R L
Sbjct: 33 SVGRSEWFVFRRYAEFDKLYNSLKKQFP-AMALKIPAKRIF---GDNFDPDFIKQRRAGL 88
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSES 108
++F++ + +P L + FL S + +
Sbjct: 89 NEFIQNLVRYPELYNHPDVRAFLQMD--SPRHQSDPSEDEDERSTSK 133
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol,
PI(4,5)P2, cell adhesion, protein transport; 1.47A
{Rattus norvegicus} PDB: 3hpb_A
Length = 161
Score = 71.4 bits (174), Expect = 4e-15
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVET--LPSHIIPPLPEKHSLLEHLNRYSK------- 51
P F E V R++ DFVWLH+ L ET IIPP P K + K
Sbjct: 37 PTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGS 96
Query: 52 ------------------EFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSM 93
+ + FL+R++SHPVLS + + +FL + S+
Sbjct: 97 MTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYD-QDLSV 155
Query: 94 HKKH 97
+K+
Sbjct: 156 RRKN 159
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain,
phosphoinositide binding, endocytosis/exocytosis
complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Length = 117
Score = 69.1 bits (169), Expect = 9e-15
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL---NRYSKEFILCRMKLLDQFLR 66
+ +RY++F L +L + S I PEK +L+ E I R L++FL
Sbjct: 31 LYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLN 90
Query: 67 RVTSHPVLSVNSHAIIF 83
+ + S I
Sbjct: 91 ELYNDRFDSRWRDTKIA 107
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex,
transport protein, phosphatidylinositol 3-phosphate
binding, nucleotide-binding; 2.20A {Homo sapiens}
Length = 134
Score = 69.1 bits (169), Expect = 1e-14
Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
D V RRY+ F +H L P K + I R L
Sbjct: 31 TVLDETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKK----LFGNKDERVIAERRSHL 86
Query: 62 DQFLRRVTSHPVLSVNSHAIIFL 84
+++LR S + S S I
Sbjct: 87 EKYLRDFFSVMLQSATSPLHINK 109
>3p0c_A Nischarin; structural genomics, structural genomics consortium,
SGC, PX signaling protein; 2.27A {Homo sapiens}
Length = 130
Score = 68.7 bits (168), Expect = 1e-14
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
E V+ RY+DF LH KLV LP K + + S+ + R K L
Sbjct: 44 TDGSHEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKK----IIGKNSRSLVEKREKDL 98
Query: 62 DQFLRRVTSHPVLSVNSHAIIFL 84
+ +L+++ + FL
Sbjct: 99 EVYLQKLLAAFPGVTPRVLAHFL 121
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607,
structural genomics,protein structure initiative PSI;
NMR {Homo sapiens}
Length = 128
Score = 57.6 bits (139), Expect = 1e-10
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
V RRY++F LH ++ + +P P K L + + R + L
Sbjct: 40 LCSGRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSK-----RLPNWRTRGLEQRRQGL 91
Query: 62 DQFLRRVTSHPVL 74
+ +++ +
Sbjct: 92 EAYIQGILYLNQE 104
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo
sapiens} PDB: 2rea_A 2red_A
Length = 121
Score = 56.8 bits (137), Expect = 2e-10
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 7 ECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLR 66
V R +++F LHNKL P +P P + L + K+ R L+ +L+
Sbjct: 37 PSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVL---GRTHIKDVAAKRKIELNSYLQ 93
Query: 67 RVTSHPVLSVNSHAII-FLTAK 87
+ + + F
Sbjct: 94 SLMNASTDVAECDLVCTFFHGS 115
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing
alpha polypeptide; PI3K, PX domain, transferase; 2.6A
{Homo sapiens}
Length = 140
Score = 56.9 bits (137), Expect = 3e-10
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 9 IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRV 68
V R +++F LHNKL P +P P + L + K+ R L+ +L+ +
Sbjct: 54 FVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVL---GRTHIKDVAAKRKIELNSYLQSL 110
Query: 69 TS-HPVLSVNSHAIIFLT 85
+ ++ F
Sbjct: 111 MNASTDVAECDLVCTFFH 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 3e-09
Identities = 60/414 (14%), Positives = 126/414 (30%), Gaps = 110/414 (26%)
Query: 6 TECIVR-RRYNDFVWLHNKL---VETLPSHIIPPLPEKHSLLEHLN--RYSKEFILCRMK 59
TE ++ ++L + + + L L + L R +K ++ +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 60 ------LLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLT 113
+ S+ V I +L + +SP + +M +
Sbjct: 160 GSGKTWVALDVCL---SYKVQCKMDFKIFWLN-------LKNCNSPETVLEMLQKLL--Y 207
Query: 114 NIYTTMSLRHHHS-----EFEQFSQYISNL-----YEK-------------ISAFE---K 147
I + R HS + L YE +AF K
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 148 I--GTRLYKERKDYVSEAHQFAIVLN--TWAGYEPQLSSVIRQV--------SKAVDTTA 195
I TR +K+ D++S A I L+ + ++ S++ + + V TT
Sbjct: 268 ILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 196 SLHKNLLIEPFHEHNSHPMKDYLMYI--DAVKQVLARRDVIQAEHDMCGEELQKKTAEK- 252
+++ E + + D ++ D + ++ + L+ K
Sbjct: 327 PRRLSIIAESIRDGLATW--DNWKHVNCDKLTTII----------ESSLNVLEPAEYRKM 374
Query: 253 -EQLT--NKDSDSSSPTSSTATSSTNSYSLWKSTSE-------DRLEKLSTA-------- 294
++L+ + + S +W + ++L K S
Sbjct: 375 FDRLSVFPPSAHIPTILLSL---------IWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 295 --IPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYY 346
IP + LE+ + H RS ++ + + K D ++ DQ +
Sbjct: 426 ISIPSI--YLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Score = 44.8 bits (105), Expect = 4e-05
Identities = 48/273 (17%), Positives = 76/273 (27%), Gaps = 80/273 (29%)
Query: 123 HHHSEFEQFSQYISNLYEKI-----SAFEK--------------IGTRLYKE---RKDYV 160
HHH +FE Y+ I AF + KD V
Sbjct: 4 HHHMDFETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 161 SEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMY 220
S + L LS V K V+ ++ L+ P P MY
Sbjct: 62 SGTLRLFWTL---------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 221 IDAVK------QVLARRDVIQAEHDMCGEELQKKTAEKEQLTN----------KDSDSSS 264
I+ QV A+ +V + + +L++ E N K
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPY---LKLRQALLELRPAKNVLIDGVLGSGK------ 163
Query: 265 PTSSTATSSTNSYSL---------W-----KSTSEDRLEKLSTAIPKLTSQLEICDEKLQ 310
+ A SY + W ++ E LE L + ++
Sbjct: 164 --TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW--TSRSDH 219
Query: 311 TANNHLRSDLERWRLE---KKNDLKKILLKIAD 340
++N LR + L K + LL +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL-VLL 251
Score = 41.4 bits (96), Expect = 4e-04
Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 20/146 (13%)
Query: 4 PDTECIVRRRYNDFVWLHNKLVE------TLPSHIIPPLPE-----KHSLLEHLN--RYS 50
P ++ + + LH +V+ T S + P H + HL +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHP 487
Query: 51 KEFILCRMKLLD-QFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKH---SPGLLNKMS 106
+ L RM LD +FL + H + N+ I T L + +K + + ++
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYERLV 545
Query: 107 ESFYNLTNIYTTMSLRHHHSEFEQFS 132
+ + + +++ + +
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIA 571
Score = 41.4 bits (96), Expect = 5e-04
Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 37/162 (22%)
Query: 207 HEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAE---KEQLTNKDSDS- 262
H H+ H M + + +D++ D + K + K L+ ++ D
Sbjct: 1 HHHHHH------MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54
Query: 263 -SSPTSSTATSSTNSYSLW----KSTS------EDRLEK----LSTAI------PKLTSQ 301
S + + T W K E+ L L + I P + ++
Sbjct: 55 IMSKDAVSGTL----RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 302 LEI-CDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQ 342
+ I ++L +N + + RL+ L++ LL++ +
Sbjct: 111 MYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase
regulator; NMR {Homo sapiens}
Length = 149
Score = 52.8 bits (126), Expect = 9e-09
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSH---------IIPPLPEKHSLLEHLNRYSKEFILC 56
++ VRR +++F L L ET P ++P L + L L
Sbjct: 39 SDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLL---GRVGRTSRGLA 95
Query: 57 RMKLLDQFLRRVTSHPVLSVNSHAII-FLTAK 87
R++LL+ + RR+ + S I F +
Sbjct: 96 RLQLLETYSRRLLATAERVARSPTITGFFAPQ 127
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo
sapiens} SCOP: d.189.1.1
Length = 143
Score = 52.3 bits (125), Expect = 1e-08
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSH--------IIPPLPEKHSLLEHLNRYSKEFILCR 57
++ ++ RRY F L +KL E +P LP K +E R
Sbjct: 50 SKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAK-----VYVGVKQEIAEMR 104
Query: 58 MKLLDQFLRRVTSHP 72
+ L+ +++ + S P
Sbjct: 105 IPALNAYMKSLLSLP 119
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain,
NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo
sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Length = 141
Score = 49.3 bits (117), Expect = 1e-07
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKH---SLLEHLNRYSKEFILCRMKLLD 62
+E +V RR+ + H L E P PE L + R L
Sbjct: 36 SEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLT 95
Query: 63 QFLRRVTSHPVLSVNSHAII-FLTAK 87
++ + S P ++ F +
Sbjct: 96 EYCSTLMSLPTKISRCPHLLDFFKVR 121
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 5e-07
Identities = 56/345 (16%), Positives = 105/345 (30%), Gaps = 113/345 (32%)
Query: 23 KLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLD--QFLRRVTSHPVLSVNSHA 80
L +T + + L L R + + + L+ ++L ++ P
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 81 -----IIFLTAKLAEFS-MHKKH--SPGLLNKMS----------------------ESFY 110
+I + LA + K +PG L ESF+
Sbjct: 235 PISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 111 NLTNIYTTMS----LRHHHSEFEQFSQY-----------------------ISNL-YEKI 142
T+ +R + E + ISNL E++
Sbjct: 294 VSVRKAITVLFFIGVRCY----EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 143 SAF-EKIGTRLYKERKDYVS---EAHQFAIVLNTWAGYEPQ----LSSVIRQVSKA---V 191
+ K + L ++ +S A V+ +G PQ L+ +R+ KA +
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNL--VV---SGP-PQSLYGLNLTLRKA-KAPSGL 402
Query: 192 DTT--------ASLHKNLL-I-EPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM- 240
D + L + PFH SH + D + + L + +V D+
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFH---SHLLVP---ASDLINKDLVKNNVSFNAKDIQ 456
Query: 241 -------CGEELQKKTAE-KEQLTNKDSDSSSP---TSSTATSST 274
G +L+ + E++ D P ++T +T
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIV--DCIIRLPVKWETTTQFKAT 499
Score = 40.8 bits (95), Expect = 7e-04
Identities = 57/393 (14%), Positives = 106/393 (26%), Gaps = 128/393 (32%)
Query: 17 FVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFI----------------LCRMKL 60
H L L +P + ++ ++F +L
Sbjct: 9 LTLSHGSLEHVLL---VP-----TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTAKLAEF---------------SMHKKHSPGLLNKM 105
+ +FL V+S S L L EF + +++ L+
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 106 S--ESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIG-TRLYK------ER 156
+++ I + S L+ + G +L
Sbjct: 121 ELIKNYIT-ARIMAKRPFDKKSN---------SALFRAVGE----GNAQLVAIFGGQGNT 166
Query: 157 KDYVSEAHQFAIVL-NTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEH------ 209
DY E L + + Y + +I+ ++ + + E
Sbjct: 167 DDYFEE-------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLD--AEKVFTQGLNILE 217
Query: 210 -----NSHPMKDYLMYID------AVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258
++ P KDYL+ I V Q LA V EL+ T
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGFTPGELRSYLK---GATGH 273
Query: 259 DSD-------SSSPTSST------------------ATSSTNSYSLWKSTSEDRLEKLST 293
+ + + + + + SL S ED LE +
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-NE 332
Query: 294 AIPKLTSQLEICD---EKLQT----ANNHLRSD 319
+P + L I + E++Q N+HL +
Sbjct: 333 GVP--SPMLSISNLTQEQVQDYVNKTNSHLPAG 363
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide;
phosphoprotein, nucleotide-binding, PIK3C2G, membrane,
PX-domain, transferase, ATP-binding; 1.25A {Homo
sapiens}
Length = 127
Score = 46.8 bits (111), Expect = 8e-07
Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQF 64
+ + + + F LH++L + S +P P HL + + R + L+ +
Sbjct: 50 NETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWW----HLPFTNSD--HRRFRDLNHY 103
Query: 65 LRRVTSHP 72
+ ++ +
Sbjct: 104 MEQILNVS 111
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P,
3-kinase, PX domain, SH3 domain, cytoskeleton, cell
polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Length = 156
Score = 42.4 bits (99), Expect = 5e-05
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 9/91 (9%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHS--------LLEHLNRYSKEFILCR 57
++R Y DF L +L++ P+ + + + R
Sbjct: 45 KTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPYVTNSITKKR 104
Query: 58 MKLLDQFLRRVTSHPVLSVNSHAII-FLTAK 87
+ L+ ++ + + P S +
Sbjct: 105 KEDLNIYVADLVNLPDYISRSEMVHSLFVVL 135
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 39.0 bits (90), Expect = 0.001
Identities = 24/219 (10%), Positives = 62/219 (28%), Gaps = 47/219 (21%)
Query: 137 NLYEKISAFEKIGTRLYKERKDYVSEAH-------QFAIVLNTWAGYEPQLSSVIRQVSK 189
+ E GTRL +E + Y++ + L+ + ++ V +
Sbjct: 42 EYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGE 101
Query: 190 AVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKT 249
D L++ + YL +K +A+R ++D L+
Sbjct: 102 KCDVLWEDFHQKLVDGSLL----TLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQ 157
Query: 250 AEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKL 309
+ K + ++ I K + + +
Sbjct: 158 SSKRKDESR------------------------------------ISKAEEEFQKAQKVF 181
Query: 310 QTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+ N L+ +L + ++ + ++++
Sbjct: 182 EEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKE 220
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A
{Drosophila melanogaster} SCOP: a.238.1.1
Length = 244
Score = 36.7 bits (84), Expect = 0.007
Identities = 29/220 (13%), Positives = 60/220 (27%), Gaps = 41/220 (18%)
Query: 138 LYEKISAFEKIGTRLYKERKDYV-----SEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVD 192
+ + RL KE +Y+ ++A ++ + YEPQ S +A
Sbjct: 42 HLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGY--DALQAQT 99
Query: 193 TTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEK 252
+ + P+ Y +K+ + +R+ ++D Q A
Sbjct: 100 GASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANA 159
Query: 253 EQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTA 312
+ K + K QLE +
Sbjct: 160 NK----------------------------------RKDDVKLTKGREQLEEARRTYEIL 185
Query: 313 NNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352
N L +L + L L + + ++ + +
Sbjct: 186 NTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKI 225
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 36.3 bits (83), Expect = 0.009
Identities = 27/217 (12%), Positives = 57/217 (26%), Gaps = 43/217 (19%)
Query: 137 NLYEKISAFEKIGTRLYKERKDYVS-----EAHQFAIVLNTWAGYEPQLSSVIRQVSKAV 191
+ G +LYK+ K+++S + Y + KA+
Sbjct: 37 QSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSS--EWDGHEELKAI 94
Query: 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAE 251
L E + M+ Y+ +K+ +A+R ++D L+
Sbjct: 95 VWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNA 154
Query: 252 KEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQT 311
K+ K K + +
Sbjct: 155 KK------------------------------------KDEAKTAKAEEEFNKAQTVFED 178
Query: 312 ANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
N L +L + I I++ + +Y++
Sbjct: 179 LNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYRE 215
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils,
endocytosis/exocytosis, protein complex,
endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A
2rnd_A
Length = 251
Score = 34.0 bits (77), Expect = 0.046
Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 43/216 (19%)
Query: 138 LYEKISAFEKIGTRLYKERKDYVS-----EAHQFAIVLNTWAGYEPQLSSVIRQVSKAVD 192
+ + GTRL K+ + Y++ + YEP R + +
Sbjct: 57 CVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEP--DWPGRDEANKIA 114
Query: 193 TTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEK 252
L + + M YL +K +A+R ++D +
Sbjct: 115 ENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESL---- 170
Query: 253 EQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTA 312
+ +K I K +L + +
Sbjct: 171 --------------------------------QTAKKKDEAKIAKAEEELIKAQKVFEEM 198
Query: 313 NNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
N L+ +L + IA + ++++
Sbjct: 199 NVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKE 234
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.089
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 20/44 (45%)
Query: 38 EKHSL--LE-HLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNS 78
EK +L L+ L Y+ + S P L++ +
Sbjct: 18 EKQALKKLQASLKLYADD-----------------SAPALAIKA 44
Score = 26.8 bits (58), Expect = 8.0
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 289 EKLSTAIPKLTSQLEICDEKLQTANN----HLRSDLE 321
EK A+ KL + L KL ++ +++ +E
Sbjct: 18 EK--QALKKLQASL-----KLYADDSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.17
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 14/74 (18%)
Query: 280 WKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERW--RLEKKNDLKKILLK 337
W+ RL++L Q + DLE W R ++ + KI +
Sbjct: 90 WREEQRKRLQELD----------AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 338 IADQQIAYYQQRSD 351
IAD+ +YQQ
Sbjct: 140 IADKA--FYQQPDA 151
Score = 27.8 bits (61), Expect = 4.4
Identities = 7/44 (15%), Positives = 22/44 (50%), Gaps = 11/44 (25%)
Query: 320 LERWRLEKKNDLKKI----------LLKIADQQIA-YYQQRSDR 352
+ +WR E++ L+++ + A + + + Q++S++
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 30.8 bits (70), Expect = 0.72
Identities = 13/88 (14%), Positives = 35/88 (39%)
Query: 225 KQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTS 284
++ R D + ++C + + +K +KE + + +S + S ++ +L S
Sbjct: 44 RRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQI 103
Query: 285 EDRLEKLSTAIPKLTSQLEICDEKLQTA 312
+ + AI K ++ + +
Sbjct: 104 KKVRLLIDEAILKCDAERIKLEAERFEN 131
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Length = 171
Score = 29.4 bits (66), Expect = 1.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 11 RRRYNDFVWLHNKLVETLPSHII 33
RR YN+ V +N + P I
Sbjct: 123 RRDYNEAVXXYNTAIXXFPGVIF 145
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 29.8 bits (67), Expect = 1.5
Identities = 19/144 (13%), Positives = 44/144 (30%), Gaps = 8/144 (5%)
Query: 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSV 183
S+ E + + +E + + IG RL+++ + + Y+ ++
Sbjct: 43 PLSKCEALRESLDLGFEGMCLEQPIGKRLFQQFLRTHEQHGPALQLWKDIEDYDTADDAL 102
Query: 184 IRQVSKAVDTTASLHKNLLIEPF-------HEHNSHPMKDYLMYIDAVKQVLARRDVIQ- 235
Q ++A+ + L F + + AV L + +
Sbjct: 103 RPQKAQALRAAYLEPQAQLFCSFLDAETVARARAGAGDGLFQPLLRAVLAHLGQAPFQEF 162
Query: 236 AEHDMCGEELQKKTAEKEQLTNKD 259
+ LQ K E + +
Sbjct: 163 LDSLYFLRFLQWKWLEAQPMGEDW 186
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.8 bits (67), Expect = 1.7
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 9/122 (7%)
Query: 222 DAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLT---NKDSDSSSPTSSTATSSTNSYS 278
D ++ R +++ L ++ + + LT NK S S
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Query: 279 LWKSTSEDRLEKLSTAIPKLTS------QLEICDEKLQTANNHLRSDLERWRLEKKNDLK 332
+ + S ++ +L+ K + + LE +K N LK
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 333 KI 334
KI
Sbjct: 1117 KI 1118
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 28.8 bits (63), Expect = 2.6
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSH--------IIPPLPEKHSLLEHLNRYSKEFILCR 57
++ ++ RRY F L +KL E +P LP K +E R
Sbjct: 53 SKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAK-----VYVGVKQEIAEMR 107
Query: 58 MKLLDQFLRRVTSHPV 73
+ L+ +++ + S PV
Sbjct: 108 IPALNAYMKSLLSLPV 123
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 28.0 bits (61), Expect = 4.1
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 12/119 (10%)
Query: 235 QAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSL--WKSTSEDRLEKLS 292
+ + Q N +D + + + S+ W+ RL++L
Sbjct: 58 GPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELD 117
Query: 293 TAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351
Q + DLE W + ++K + A+YQQ
Sbjct: 118 ----------AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 166
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel,
antibiotic RES lipoprotein, palmitate, transmemb
transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Length = 474
Score = 28.1 bits (63), Expect = 5.7
Identities = 7/16 (43%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 226 QVLARR-DVIQAEHDM 240
+L RR D+++AEH +
Sbjct: 267 DLLQRRPDILEAEHQL 282
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer
membrane; HET: UNL; 2.30A {Escherichia coli}
Length = 446
Score = 27.6 bits (62), Expect = 6.2
Identities = 7/16 (43%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Query: 226 QVLARR-DVIQAEHDM 240
Q+L +R D+++AEH +
Sbjct: 258 QILLQRPDIMEAEHAL 273
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 27.7 bits (62), Expect = 6.4
Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 225 KQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTS 284
++ + + ++C + + K KE D D+S + N +
Sbjct: 47 RRTQFLTEASKKLINICSKAVGAKKKAKE----ADGDTSEIPPQVKEAYENGTLKGEQVE 102
Query: 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLER 322
+ + +L L+ Q+ ++ Q +
Sbjct: 103 QLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLN 140
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 27.1 bits (61), Expect = 8.9
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 111 NLTNIYTTMSLRHHHSE--------FEQFSQYISNLYEKISAFEKIGTRLYKERKDYV 160
N+TN + H F F+ + I+ FE +G +L +E +
Sbjct: 74 NVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN-----EDIITFFENLGVKLKEEDHGRM 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.376
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,210,016
Number of extensions: 288359
Number of successful extensions: 715
Number of sequences better than 10.0: 1
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 66
Length of query: 357
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 262
Effective length of database: 4,049,298
Effective search space: 1060916076
Effective search space used: 1060916076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)