RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18202
(357 letters)
>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 132
Score = 71.3 bits (174), Expect = 7e-16
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL--NRYSKEFILCRM 58
P F VRRRY+DF + L++ + P + H + L NR+S E I R
Sbjct: 40 PSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERR 99
Query: 59 KLLDQFLRRVTSHPVLSVNSHA-IIFLTAK 87
+ L+ +++ V HP+L S + F+ A+
Sbjct: 100 QGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 129
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 117
Score = 67.7 bits (165), Expect = 1e-14
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL---NRYSKEFILCRMKLLD 62
+ +RY++F L +L + S I PEK +L+ E I R L+
Sbjct: 27 PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLE 86
Query: 63 QFLRRVTSHPVLSVNSHAIIFLT 85
+FL + + S I
Sbjct: 87 RFLNELYNDRFDSRWRDTKIAQD 109
>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 140
Score = 61.3 bits (148), Expect = 3e-12
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKH---SLLEHLNRYSKEFILCRMKLLD 62
+E +V RR+ + H L E P PE L + R L
Sbjct: 35 SEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLT 94
Query: 63 QFLRRVTSHPVLSVNSHAII-FLTAKLAEFSMHKKHSP 99
++ + S P ++ F + + + +
Sbjct: 95 EYCSTLMSLPTKISRCPHLLDFFKVRPDDLKLPTDNQT 132
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 116
Score = 60.1 bits (145), Expect = 5e-12
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
+E V RRY +F L+N L + P+ + ++ + + +FI R L
Sbjct: 30 SVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRI----FGDNFDPDFIKQRRAGL 85
Query: 62 DQFLRRVTSHPVLSVNSHAIIFL 84
++F++ + +P L + FL
Sbjct: 86 NEFIQNLVRYPELYNHPDVRAFL 108
>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 143
Score = 49.3 bits (117), Expect = 4e-08
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 5 DTECIVRRRYNDFVWLHNKLVETLPSH--------IIPPLPEKHSLLEHLNRYSKEFILC 56
++ ++ RRY F L +KL E +P LP K +E
Sbjct: 49 GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAK-----VYVGVKQEIAEM 103
Query: 57 RMKLLDQFLRRVTS-HPVLSVNSHAIIFLTAK 87
R+ L+ +++ + S + ++ IF
Sbjct: 104 RIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 135
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 48.2 bits (114), Expect = 4e-07
Identities = 21/222 (9%), Positives = 57/222 (25%), Gaps = 38/222 (17%)
Query: 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQ 186
F+ + + +K + + + + + + ++
Sbjct: 13 IFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQA 72
Query: 187 VSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQ 246
+ A ++ + + L + P+ Y +K+ + +R+ ++D Q
Sbjct: 73 QTGASESLWADFAHKLGDQVLI----PLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQ 128
Query: 247 KKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICD 306
A + K + K QLE
Sbjct: 129 NLQANANK----------------------------------RKDDVKLTKGREQLEEAR 154
Query: 307 EKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+ N L +L + L L + + ++ +
Sbjct: 155 RTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNE 196
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga
maritima [TaxId: 2336]}
Length = 149
Score = 26.9 bits (59), Expect = 2.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 11 RRRYNDFVWLHNKLVETLPSHII 33
RR YN+ V +N ++ P I
Sbjct: 111 RRDYNEAVKKYNTAIKKFPGVIF 133
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Thermus thermophilus
[TaxId: 274]}
Length = 151
Score = 25.5 bits (55), Expect = 7.0
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 2/23 (8%)
Query: 17 FVWL--HNKLVETLPSHIIPPLP 37
F+ + H K V L +
Sbjct: 116 FIVIADHTKKVPVLLFVGMATRA 138
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 25.1 bits (54), Expect = 7.0
Identities = 4/71 (5%), Positives = 22/71 (30%)
Query: 221 IDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280
++A + + + + + +++ +L + + S + +
Sbjct: 32 LEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKN 91
Query: 281 KSTSEDRLEKL 291
+++ L
Sbjct: 92 NEKAQEASVLL 102
>d1qsaa2 d.2.1.6 (A:451-618) 70 kDa soluble lytic transglycosylase,
SLT70 {Escherichia coli [TaxId: 562]}
Length = 168
Score = 25.6 bits (55), Expect = 7.2
Identities = 11/91 (12%), Positives = 30/91 (32%)
Query: 90 EFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIG 149
+ + + + + Y S +++ + ++ N +I A +
Sbjct: 68 GQLLDPETNINIGTSYLQYVYQQFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVE 127
Query: 150 TRLYKERKDYVSEAHQFAIVLNTWAGYEPQL 180
+ + E + YV + + G +P L
Sbjct: 128 SIPFSETRGYVKNVLAYDAYYRYFMGDKPTL 158
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
{Bacillus sp. GL1 [TaxId: 84635]}
Length = 377
Score = 25.8 bits (56), Expect = 8.2
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 318 SDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353
S +W +EK +K+ L AD + ++ +
Sbjct: 96 SAKAQWIVEKDESARKLALDAADVLMRRWRADAGII 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.376
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,264,335
Number of extensions: 55082
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 19
Length of query: 357
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,226,816
Effective search space: 332467136
Effective search space used: 332467136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)