RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18203
(316 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 279 bits (715), Expect = 7e-94
Identities = 115/292 (39%), Positives = 155/292 (53%), Gaps = 49/292 (16%)
Query: 26 IDTKFWLLTRENPTEPQFLKYSDDKISIKSSHFNVSRPTKFIAHGFKGSGKDRGAWNIVE 85
ID +F L TRENP PQ L DD S+K+S+FN SRPT+FI HG+ SG++ ++ +
Sbjct: 1 IDVRFLLYTRENPNCPQLLFA-DDPSSLKNSNFNPSRPTRFIIHGWTSSGEESWISDLRK 59
Query: 86 ALLEIVSTDLENFQMLSNYDKRAVIEDVNVILVDWEKGAAGPSYALAATNTQIIGRQLAL 145
A L D NVI+VDW +G A P+Y A NT+++G +LA
Sbjct: 60 AYLS--------------------RGDYNVIVVDWGRG-ANPNYPQAVNNTRVVGAELAK 98
Query: 146 LILDMVS-FGADPQDIHIVGFSLGAHVAGYAGRGVQNKGFKIGRITGLDPASPLFRQLLA 204
+ +V G +++H++G SLGAHVAG+AG+ + K+GRITGLDPA PLF A
Sbjct: 99 FLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLN---GKLGRITGLDPAGPLFS--GA 153
Query: 205 TSLVSLNSGDAHYVDVIHSDGARHWSEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLV 264
L+ DA +VDVIH+DG LG + IGH+D++PNGG DQPGC +
Sbjct: 154 DPEDRLDPSDAQFVDVIHTDGG-----LLGFSQPIGHADFYPNGGRDQPGCPKDILSS-- 206
Query: 265 SHLEGTMNSSVVCNHIRAWKLFYESLKMSKQEDGCKFFAFHCPGGLKSFKLG 316
V C+H RA F ES+ C F A+ C F G
Sbjct: 207 --------DFVACSHQRAVHYFAESILSP-----CGFVAYPC-SSYDEFLAG 244
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 213 bits (543), Expect = 3e-67
Identities = 110/320 (34%), Positives = 160/320 (50%), Gaps = 48/320 (15%)
Query: 2 VGCFSI-----PRRSVAPFGKKTPQSPEDIDTKFWLLTRENPTEPQFLKYSDDKISIKSS 56
+GCF P K P P+ I+ +F L T ENP Q + +I++S
Sbjct: 8 LGCFGDKKPWAGNTLARPA-KSLPWQPKFIEVRFLLYTNENPNNCQLITTGLPS-TIENS 65
Query: 57 HFNVSRPTKFIAHGFKGSG-KDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNV 115
+FN S+ T+ I HGF G ++ ++ + L ++ E VNV
Sbjct: 66 NFNTSKKTRAIIHGFTDKGQEESWLSDMCKNLFQV--------------------EGVNV 105
Query: 116 ILVDWEKGAAGPSYALAATNTQIIGRQLALLILDMV-SFGADPQDIHIVGFSLGAHVAGY 174
I+VDW G+ Y A N +++G ++A L++++ P+++H++G SLGAHVAG
Sbjct: 106 IVVDWGSGSTT-FYRQATLNVRVVGAEVAKLLVELEEELNVSPENVHLIGHSLGAHVAGE 164
Query: 175 AGRGVQNKGFKIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSEGLG 234
AGR K+GRITGLDPA P F+ L L+ GDA +VD IH+D G+G
Sbjct: 165 AGRRT-KGKTKLGRITGLDPAGPYFKG--TPELTRLDPGDADFVDAIHTDTRPIPGLGMG 221
Query: 235 LFEAIGHSDYFPNGGLDQPGCEHKKNAVLVSHLEGTMNSSVVCNHIRAWKLFYESLKMSK 294
+ +GH D+FPNGG +QPGC +N V LEGT V C H+R+ + F ESL +
Sbjct: 222 TSQRVGHVDFFPNGGSEQPGC---QNNV----LEGT--QFVACAHMRSVRYFAESLLNPR 272
Query: 295 QEDGCKFFAFHCPGGLKSFK 314
F A+ C F
Sbjct: 273 N-----FPAYPC-SSYDEFS 286
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 131 bits (331), Expect = 6e-35
Identities = 93/288 (32%), Positives = 140/288 (48%), Gaps = 36/288 (12%)
Query: 24 EDIDTKFWLLTRENPTEPQFLKYSDDKISIKSSHFNVSRPTKFIAHGFKGSGKDRGAW-- 81
DI++KF L T E P + SI +FN T + HG+ +G +W
Sbjct: 3 TDIESKFSLRTPEEPDDDTCYIVPGQPDSIADCNFNHETKTFIVIHGWTVTGMFE-SWVP 61
Query: 82 NIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILVDWEKGAAGPSYALAATNTQIIGR 141
+V AL Y++ NVI+VDW A Y +A T+++G+
Sbjct: 62 KLVAAL----------------YEREP---SANVIVVDW-LSRAQQHYPTSAAYTKLVGK 101
Query: 142 QLALLILDMVSFGADPQD-IHIVGFSLGAHVAGYAGRGVQNKGFKIGRITGLDPASPLFR 200
+A + M P D +H++G+SLGAHVAG AG ++K + RITGLDPA P F
Sbjct: 102 DVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHK---VNRITGLDPAGPTFE 158
Query: 201 QLLATSLVSLNSGDAHYVDVIHSDGARHWSEGLGLFEAIGHSDYFPNGGLDQPGCEHKKN 260
A + +L+ DA +VDV+H++ +G+ +GH D +PNGG QPGC+ +
Sbjct: 159 Y--ADAPSTLSPDDADFVDVLHTNTRGSPDRSIGIQRPVGHIDIYPNGGTFQPGCD-IQE 215
Query: 261 AVLVSHLEG--TMNSSVVCNHIRAWKLFYESLKMSKQEDGCKFFAFHC 306
+LV +G M+ V C+H R+ LF +SL + A+ C
Sbjct: 216 TLLVIAEKGLGNMDQLVKCSHERSIHLFIDSLLNEENPS----MAYRC 259
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 153
Score = 86.4 bits (214), Expect = 9e-21
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 13/157 (8%)
Query: 135 NTQIIGRQLALLILDMV---SFGADPQDIHIVGFSLGAHVAGYAGRGVQ-NKGFKIGRIT 190
R LA L+L ++ IH+ G SLG +AG AG ++ ++ R+
Sbjct: 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVY 61
Query: 191 GLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDG---ARHWSEGLGLFEAIGHSDYFPN 247
P A + L+ DA +VD I +D R G G G ++++ N
Sbjct: 62 TFGPPRVGNA---AFAEDRLDPSDALFVDRIVNDNDIVPRLPPGGEGYP--HGGAEFYIN 116
Query: 248 GGLDQPGCEHKKNAVLVSHLEGTMNS-SVVCNHIRAW 283
GG QPGC + S + +C+H+R +
Sbjct: 117 GGKSQPGCCKNVLEAVDIDFGNIGLSGNGLCDHLRYF 153
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 33.2 bits (76), Expect = 0.100
Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 36/169 (21%)
Query: 111 EDVNVILVDWEKGAAGPSYALAATNTQIIGRQLALLILDMVSF--GADPQDIHIVGFSLG 168
V+ D P + + L D+ + + +VG SLG
Sbjct: 23 AGYRVLAPDL------PGHGDSD-GPPRTPYSLEDDAADLAALLDALGLGPVVLVGHSLG 75
Query: 169 AHVAGYAGRGVQNKGFKIGRITGLDPASPLFRQLL---ATSLVSLNSGDAHYVD------ 219
VA A ++ + + P +LL A +L++L D
Sbjct: 76 GAVALAAAARRPE---RVAGLVLISPPLRDLEELLAADAAALLALLRAALLDADLREALA 132
Query: 220 -------VIHSDGARHWSEGLG--LFEAIGHSDY--FPNGG----LDQP 253
VIH + L EA+ ++ P G L+ P
Sbjct: 133 RLTVPVLVIHGEDDPLVPPEAARRLAEALPGAELVVLPGAGHLPHLEHP 181
>gnl|CDD|184413 PRK13948, PRK13948, shikimate kinase; Provisional.
Length = 182
Score = 30.1 bits (68), Expect = 0.90
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 60 VSRPTKFIA-HGFKGSGKDRGAWNIVEAL-LEIVSTD 94
+ RP ++A GF G+GK R W + AL L + TD
Sbjct: 6 IERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42
>gnl|CDD|222899 PHA02595, tk.4, hypothetical protein; Provisional.
Length = 154
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 18/51 (35%)
Query: 73 GSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILVDWEKG 123
G+G G W+ +EA+++ + D++ +++V++EK
Sbjct: 122 GAGIAGGDWDKIEAIIDEATPDID------------------IVVVEYEKS 154
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain only
a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 29.6 bits (67), Expect = 1.1
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 66 FIAHGFKGSGKDRGAWNIVEAL-LEIVSTDLENFQM 100
+ G GSGK A ++ L ++S+D ++
Sbjct: 2 ILMVGLPGSGKSTFARRLLRELGAVVLSSDTLRKRL 37
>gnl|CDD|221123 pfam11495, Regulator_TrmB, Archaeal transcriptional regulator TrmB.
TrmB is an alpha-glucoside sensing transcriptional
regulator. The protein is the transcriptional repressor
for gene cluster encoding trehalose/maltose ABC
transporter in T.litoralis and P.furiosus. TrmB has lost
its DNA binding domain but retained its sugar
recognition site. A nonreducing glucosyl residue is
shared by all substrates bound to TrmB which suggests
that its a common recognition motif.
Length = 228
Score = 28.8 bits (65), Expect = 2.9
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 90 IVSTDLENFQMLSNYDKRAVIEDVNVILV 118
IVS E + L Y A V V L+
Sbjct: 27 IVSLPPELLRYLREYLIAAADRGVTVYLL 55
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 28.1 bits (63), Expect = 3.2
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 152 SFGADPQDIHIVGFSLGAHVA-GYAGR 177
DP+ I +VG SLG VA A R
Sbjct: 52 DAPLDPERIVLVGHSLGGGVALLLAAR 78
>gnl|CDD|182305 PRK10206, PRK10206, putative oxidoreductase; Provisional.
Length = 344
Score = 28.6 bits (64), Expect = 3.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 44 LKYSDDKISIKSSHFNVSRPTKFIAHGFKGS 74
L Y D K +K+SH KFI HG KGS
Sbjct: 213 LFYGDLKAIVKTSHLVKIDYPKFIVHGKKGS 243
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 28.8 bits (65), Expect = 4.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 151 VSFGADPQDIHIVGFSLGA 169
+FG DP + I G S G
Sbjct: 169 AAFGGDPDSVTIFGESAGG 187
>gnl|CDD|116565 pfam07955, DUF1687, Protein of unknown function (DUF1687). This is
a putative redox protein which is predicted to have a
thioredoxin fold containing a single active cysteine.
Length = 135
Score = 27.8 bits (62), Expect = 4.7
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 85 EALLEIVSTDLENFQMLSNYDKRAVIEDVNVILVDWEKGAAGP 127
E L+ + D E L + + + VDWEKG G
Sbjct: 84 EEALKKFNEDPEFGSPLQKCVQNGLFNKQRPLWVDWEKGLVGT 126
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 28.1 bits (63), Expect = 6.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 152 SFGADPQDIHIVGFSLGAHVAGY 174
+FG DP ++ + G S GA
Sbjct: 176 AFGGDPDNVTLFGESAGAASVSL 198
>gnl|CDD|225856 COG3319, COG3319, Thioesterase domains of type I polyketide
synthases or non-ribosomal peptide synthetases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 257
Score = 27.8 bits (62), Expect = 7.0
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 9/93 (9%)
Query: 159 DIHIVGFSLGAHVAGYAGRGVQNKGFKIGRITGLDPASPLFRQLLATSLVSLNSGDAHYV 218
++G+SLG VA ++ +G ++ + LD P + T
Sbjct: 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPPHNGRKEETRNRWRRYARTAEK 125
Query: 219 DVIHSDGARHWSEGLGLFEAIGHSDYFPNGGLD 251
+ + L E +
Sbjct: 126 T-------ANGLDPEVLAEILA--SLGAEAAEY 149
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 28.2 bits (63), Expect = 7.7
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 14/55 (25%)
Query: 152 SFGADPQDIHIVGFSLGAHVAGYAGRGVQNKGFKIGRITGLDPASPLFRQLLATS 206
+FG DPQ++ + G S GA I + + A LF + +A S
Sbjct: 174 AFGGDPQNVTLFGESAGAA--------------SILTLLAVPSAKGLFHRAIALS 214
>gnl|CDD|234994 PRK01973, PRK01973, septum formation inhibitor; Reviewed.
Length = 271
Score = 27.8 bits (62), Expect = 8.2
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 123 GAAGPSYALAATNTQIIGRQLA----------LLILDMVSFGAD---PQDIHIVGFSLGA 169
A P A + T +I R L L++L VS+GA+ +IHI G
Sbjct: 150 PAPAPEAVAAQSQTLVIDRPLRSGQQIYAKGDLVVLGPVSYGAEVIAEGNIHIYAPLRGR 209
Query: 170 HVAGYAG 176
+AG G
Sbjct: 210 ALAGVHG 216
>gnl|CDD|218362 pfam04984, Phage_sheath_1, Phage tail sheath protein. This family
includes a variety of phage tail sheath proteins.
Length = 437
Score = 27.8 bits (62), Expect = 9.6
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 147 ILDMVSFGADPQDIHIVGFSLGAHVAGYAGRGVQNKGFKIGRITGLDPASPLFRQ 201
I+++ + A I A VAG N+ TG SP
Sbjct: 244 IINVSNTVALLDGPRITPAPAAAWVAGLIAGADVNQSDTNLEYTGATDVSPRLTN 298
>gnl|CDD|107260 cd01575, PBP1_GntR, Ligand-binding domain of DNA transcription
repressor GntR specific for gluconate, a member of the
LacI-GalR family of bacterial transcription regulators.
This group represents the ligand-binding domain of DNA
transcription repressor GntR specific for gluconate, a
member of the LacI-GalR family of bacterial
transcription regulators. The ligand-binding domain of
GntR is structurally homologous to the periplasmic
sugar-binding domain of ABC-type transporters and both
domains contain the type I periplasmic binding
protein-like fold. The LacI-GalR family repressors are
composed of two functional domains: an N-terminal HTH
(helix-turn-helix) domain, which is responsible for the
DNA-binding specificity, and a C-terminal ligand-binding
domain, which is homologous to the type I periplasmic
binding proteins. As also observed in the periplasmic
binding proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding, which in turn changes the
DNA binding affinity of the repressor.
Length = 268
Score = 27.5 bits (62), Expect = 9.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 139 IGRQLALLILDMVSFGADPQDIHIVGFSL 167
IGR+ A L+L ++ I +GF L
Sbjct: 235 IGRRAAELLLARLAGEEPEPRIVDLGFEL 263
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,212,623
Number of extensions: 1562079
Number of successful extensions: 1243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1217
Number of HSP's successfully gapped: 37
Length of query: 316
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 219
Effective length of database: 6,635,264
Effective search space: 1453122816
Effective search space used: 1453122816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)