RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18203
(316 letters)
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 277 bits (709), Expect = 8e-91
Identities = 105/322 (32%), Positives = 165/322 (51%), Gaps = 40/322 (12%)
Query: 2 VGCFSIPRRSVAPFG---KKTPQSPEDIDTKFWLLTRENPTEPQFLKYSDDKISIKSSHF 58
+GCFS + K P SPE+++T+F L T +NP Q + D +IKSS+F
Sbjct: 8 LGCFSDDKPWAGTLQRPLKSLPWSPEEVNTRFLLYTNKNPDSYQLITARDVA-TIKSSNF 66
Query: 59 NVSRPTKFIAHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILV 118
SR T F+ HGF+ G+D ++ + +L++ E N I V
Sbjct: 67 QSSRKTHFVIHGFRDRGEDSWPSDMCKKILQV--------------------ETTNCISV 106
Query: 119 DWEKGAAGPSYALAATNTQIIGRQLALLILDMVS-FGADPQDIHIVGFSLGAHVAGYAGR 177
DW GA Y A N +I+G + A LI +++ +P+++HI+G SLGAH AG AGR
Sbjct: 107 DWSSGAKAE-YTQAVQNIRIVGAETAYLIQQLLTELSYNPENVHIIGHSLGAHTAGEAGR 165
Query: 178 GVQNKGFKIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARH-WSEGLGLF 236
++ ++GR+TGLDPA P F+ A+ V L+ DA +VDVIH+D + S G G+
Sbjct: 166 RLE---GRVGRVTGLDPAEPCFQD--ASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMS 220
Query: 237 EAIGHSDYFPNGGLDQPGCEHKKNAVLV--SHLEGTMNSSVVCNHIRAWKLFYESLKMSK 294
+ +GH D+FPNGG PGC+ + + + + + CNH+++++ + S+
Sbjct: 221 QKVGHMDFFPNGGKQMPGCKRSSFSTFIDINGIWQGAQDYLACNHLKSFEYYSSSILNP- 279
Query: 295 QEDGCKFFAFHCPGGLKSFKLG 316
F A+ C F+
Sbjct: 280 ----DGFLAYPCD-SYDKFQEN 296
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 276 bits (706), Expect = 2e-90
Identities = 107/313 (34%), Positives = 158/313 (50%), Gaps = 40/313 (12%)
Query: 2 VGCFSIPRRSVAPFG---KKTPQSPEDIDTKFWLLTRENPTEPQFLKYSDDKISIKSSHF 58
+GCFS K P SPE ++T+F L T ENP Q + D +I+SS+F
Sbjct: 8 LGCFSDDSPWAGIVERPLKILPWSPEKVNTRFLLYTNENPDNFQEI--VADPSTIQSSNF 65
Query: 59 NVSRPTKFIAHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILV 118
N R T+FI HGF G++ + + + + +E VN I V
Sbjct: 66 NTGRKTRFIIHGFIDKGEESWLSTMCQNMFK--------------------VESVNCICV 105
Query: 119 DWEKGAAGPSYALAATNTQIIGRQLALLILDMVS-FGADPQDIHIVGFSLGAHVAGYAGR 177
DW+ G + +Y+ A+ N +I+G ++A L+ + S F P ++HI+G SLG+H AG AGR
Sbjct: 106 DWKSG-SRTAYSQASQNVRIVGAEVAYLVGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGR 164
Query: 178 GVQNKGFKIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARH-WSEGLGLF 236
+GRITGLDPA P F+ LV L+ DA +VDVIH+D A + G G+
Sbjct: 165 RTN---GAVGRITGLDPAEPCFQG--TPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMS 219
Query: 237 EAIGHSDYFPNGGLDQPGCEHKKNAVLVS--HLEGTMNSSVVCNHIRAWKLFYESLKMSK 294
+ GH D+FPNGG + PGC+ + +V + CNH+R++K + +S+
Sbjct: 220 QTAGHLDFFPNGGKEMPGCQKNVLSQIVDIDGIWQGTRDFAACNHLRSYKYYTDSILNP- 278
Query: 295 QEDGCKFFAFHCP 307
F F C
Sbjct: 279 ----DGFAGFSCA 287
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 269 bits (688), Expect = 6e-88
Identities = 101/320 (31%), Positives = 160/320 (50%), Gaps = 54/320 (16%)
Query: 2 VGCFSIPRRSVAPFG---KKTPQSPEDIDTKFWLLTRENPTEPQFLKYSDDKISIKSSHF 58
+GCFS + K P P+ I+T+F L T EN Q + +D +IK+S+F
Sbjct: 8 LGCFSDEKPWAGTSQRPIKSLPSDPKKINTRFLLYTNENQNSYQLITATDIA-TIKASNF 66
Query: 59 NVSRPTKFIAHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILV 118
N++R T+FI HGF SG++ ++ + + + +E VN I V
Sbjct: 67 NLNRKTRFIIHGFTDSGENSWLSDMCKNMFQ--------------------VEKVNCICV 106
Query: 119 DWEKGAAGPSYALAATNTQIIGRQLALLILDMVS-FGADPQDIHIVGFSLGAHVAGYAGR 177
DW+ G + Y+ A+ N +++G ++A L+ + + P+++HI+G SLGAH AG AG+
Sbjct: 107 DWKGG-SKAQYSQASQNIRVVGAEVAYLVQVLSTSLNYAPENVHIIGHSLGAHTAGEAGK 165
Query: 178 GVQNKGFKIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARH-WSEGLGLF 236
+ +GRITGLDPA P F+ V L+ DA +VDVIH+D + S G G+
Sbjct: 166 RLNG---LVGRITGLDPAEPYFQD--TPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMS 220
Query: 237 EAIGHSDYFPNGGLDQPGCEHKKNAVLVSHLEGTMNSSVVCNHIRAWKLFYESLKMSKQE 296
+ +GH D+FPNGG D PGC+ + + CNH R+ + ++ S+
Sbjct: 221 QKVGHMDFFPNGGKDMPGCK----------------TGISCNHHRSIEYYHSSILNP--- 261
Query: 297 DGCKFFAFHCPGGLKSFKLG 316
F + C F+
Sbjct: 262 --EGFLGYPCA-SYDEFQES 278
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 266 bits (682), Expect = 8e-87
Identities = 108/322 (33%), Positives = 166/322 (51%), Gaps = 40/322 (12%)
Query: 2 VGCFSIPRRSVAPFG---KKTPQSPEDIDTKFWLLTRENPTEPQFLKYSDDKISIKSSHF 58
+GCFS + K P SPEDIDT+F L T ENP Q + ++ +IK S+F
Sbjct: 8 LGCFSNDKPWAGMLQRPLKIFPWSPEDIDTRFLLYTNENPNNYQKISATEPD-TIKFSNF 66
Query: 59 NVSRPTKFIAHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILV 118
+ R T+FI HGF G+D ++ + + ++ E VN I V
Sbjct: 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQV--------------------EKVNCICV 106
Query: 119 DWEKGAAGPSYALAATNTQIIGRQLALLILDMVS-FGADPQDIHIVGFSLGAHVAGYAGR 177
DW +G+ Y A+ NT+++G ++A L+ + + G P+++H++G SLGAHV G AGR
Sbjct: 107 DWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGR 165
Query: 178 GVQNKGFKIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSE-GLGLF 236
++ +GRITGLDPA P F+ V L+ DA +VDVIH+D A G G+
Sbjct: 166 RLE---GHVGRITGLDPAEPCFQG--LPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMS 220
Query: 237 EAIGHSDYFPNGGLDQPGCE--HKKNAVLVSHLEGTMNSSVVCNHIRAWKLFYESLKMSK 294
+ +GH D+FPNGG + PGC+ V ++ + + V CNH+R++K + S+
Sbjct: 221 QKVGHLDFFPNGGKEMPGCQKNILSTIVDINGIWEGTQNFVACNHLRSYKYYASSILNP- 279
Query: 295 QEDGCKFFAFHCPGGLKSFKLG 316
F + C + F+
Sbjct: 280 ----DGFLGYPCS-SYEKFQQN 296
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 263 bits (672), Expect = 3e-85
Identities = 103/313 (32%), Positives = 155/313 (49%), Gaps = 40/313 (12%)
Query: 2 VGCFSIPRRSVAPFG---KKTPQSPEDIDTKFWLLTRENPTEPQFLKYSDDKISIKSSHF 58
+GCFS K P SPE I T+F L T +NP Q L SD +I +S+F
Sbjct: 8 IGCFSDAEPWAGTAIRPLKVLPWSPERIGTRFLLYTNKNPNNFQTLLPSDPS-TIGASNF 66
Query: 59 NVSRPTKFIAHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILV 118
+ T+FI HGF G++ ++ + + + +E+VN I V
Sbjct: 67 QTDKKTRFIIHGFIDKGEENWLLDMCKNMFK--------------------VEEVNCICV 106
Query: 119 DWEKGAAGPSYALAATNTQIIGRQLALLILDMVS-FGADPQDIHIVGFSLGAHVAGYAGR 177
DW+KG + SY AA N +++G Q+A ++ + + + P + ++G SLGAHVAG AG
Sbjct: 107 DWKKG-SQTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGS 165
Query: 178 GVQNKGFKIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSE-GLGLF 236
+ +GRITGLDP F+ V L+ DA +VDVIH+D A G G
Sbjct: 166 ----RTPGLGRITGLDPVEASFQG--TPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTS 219
Query: 237 EAIGHSDYFPNGGLDQPGCEHKKNAVLV--SHLEGTMNSSVVCNHIRAWKLFYESLKMSK 294
+ +GH D+FPNGG + PGC+ + +V + V CNH+R++K + ES+
Sbjct: 220 QQMGHLDFFPNGGEEMPGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESILNP- 278
Query: 295 QEDGCKFFAFHCP 307
F ++ C
Sbjct: 279 ----DGFASYPCA 287
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 9e-10
Identities = 42/320 (13%), Positives = 88/320 (27%), Gaps = 102/320 (31%)
Query: 17 KKTPQSPEDIDTKFWLLTRENP--TEPQFLKYS----DDKISIKSSHFNVSRPTKFIA-H 69
K + P T+ ++ R+ F KY+ + ++ + + RP K +
Sbjct: 99 KTEQRQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLID 156
Query: 70 GFKGSGK------------------DRGAW------NIVEALLEIVSTDLENF--QMLSN 103
G GSGK + W N E +LE+ L+ Q+ N
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPN 212
Query: 104 YDKRAVIEDVNVILVDWEKGAAGPSYALAATNTQIIGRQL--ALLILDMVSFGADPQDIH 161
+ R+ + + + A + + LL+L V + +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQ---------AELRRLLKSKPYENCLLVLLNVQ---NAKAW- 259
Query: 162 IVGFSLGAHVAGYAGRGVQNKGFKIG-RITGLDPASPLFRQLLATSLVS----LNSGDAH 216
F + +I LL T L++
Sbjct: 260 --------------------NAFNLSCKI------------LLTTRFKQVTDFLSAATTT 287
Query: 217 YVDVIHSDGARHWSEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLVSHLEGTMNSSVV 276
++ + H E L D P + + + ++ + +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQ-----DLP-----REVLTTNPRRLSIIAESI 337
Query: 277 CNHIRAWKLFYESLKMSKQE 296
+ + W ++ + K
Sbjct: 338 RDGLATWD-NWKHVNCDKLT 356
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 2e-08
Identities = 36/202 (17%), Positives = 58/202 (28%), Gaps = 91/202 (45%)
Query: 72 KGSGKD--------RGAWNIVEA-----------LLEIVSTDLEN-------F------Q 99
+G G D + WN A +L+IV + N F +
Sbjct: 1629 QGMGMDLYKTSKAAQDVWN--RADNHFKDTYGFSILDIV---INNPVNLTIHFGGEKGKR 1683
Query: 100 MLSNYDK-------------RAVIEDVNVILVD--WEKGAAGPSYALAAT-NTQIIGRQL 143
+ NY + +++N + L+AT TQ
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR----SEKGLLSATQFTQP----- 1734
Query: 144 ALLILDMVSF------GADPQDIHIVGFSLG-----AHVAGY----------AGRG--VQ 180
AL +++ +F G P D G SLG A +A RG +Q
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 181 N------KGFKIGRITGLDPAS 196
G + ++P
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGR 1816
Score = 50.8 bits (121), Expect = 3e-07
Identities = 64/353 (18%), Positives = 111/353 (31%), Gaps = 121/353 (34%)
Query: 23 PEDIDTKFWLLTRENPTEPQFLKYSDDKIS------IKSSHFNVS------RPTKFIAHG 70
+ ++ WL N + +L IS I+ +H+ V+ P + ++
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSI--PISCPLIGVIQLAHYVVTAKLLGFTPGELRSY- 266
Query: 71 FKG-SGKDRGAWNIVEALLEIVSTDLENFQMLSNYDK----------RA----------- 108
KG +G +G +V A+ + E+F + K R
Sbjct: 267 LKGATGHSQG---LVTAVAIAETDSWESF--FVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 109 -VIEDVNVILVDWEKGAAGPSYALAATNTQIIGRQLALLILDMVSFGADPQDIHIVGFSL 167
++ED E PS L+ +N Q+ + S + + I SL
Sbjct: 322 SILED------SLENNEGVPSPMLSISNLTQ--EQVQDYVNKTNSHLPAGKQVEI---SL 370
Query: 168 --GAH---VAGY---------------AGRGV-QNK-GF-----KIG----RITG----- 191
GA V+G A G+ Q++ F K +
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 192 -LDPASPLFRQLLATSLVSLNSGDAHYVDVIHS-DGA--RHWSEGLG--LFEAIGHS--- 242
L PAS L + L + VS N+ D + V + DG+ R S + + + I
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQ-IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 243 -------------DYFPNGGLDQPGCEHKKNA-------VLVSHLEGTMNSSV 275
D+ P GG G +N ++ L+ +
Sbjct: 490 WETTTQFKATHILDFGP-GGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 42.7 bits (100), Expect = 1e-04
Identities = 36/187 (19%), Positives = 58/187 (31%), Gaps = 62/187 (33%)
Query: 1 KVGCFSIPRRSVAPFGKKTPQSPEDIDTKFWLLTRENP-TEP---QFLKYSDDKISIKSS 56
K S +S PF ++ + +F L P P L + D I
Sbjct: 395 KAKAPSGLDQSRIPFSERKLK----FSNRF--L----PVASPFHSHLLVPASDLI----- 439
Query: 57 HFNVSRPTKFIAHGFKGSGKDRGAWNIVEALLEI-V-ST-DLENFQMLSNYDKRAVIEDV 113
+ + + KD ++I V T D + ++LS +++ +
Sbjct: 440 ------NKDLVKNNVSFNAKD----------IQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 114 NVILVDWEKGAAGPSYALAATNTQIIGRQLALLILDMVSFGADPQDIHIVGFSLGAHVAG 173
+ V WE T + A ILD FG P +G L
Sbjct: 484 IRLPVKWET----------TTQFK------ATHILD---FG--PGGASGLG-VLTHRNK- 520
Query: 174 YAGRGVQ 180
G GV+
Sbjct: 521 -DGTGVR 526
Score = 35.0 bits (80), Expect = 0.035
Identities = 38/259 (14%), Positives = 71/259 (27%), Gaps = 110/259 (42%)
Query: 139 IGRQLALLILDMVSFGAD---PQDIHIVGFSLGAHVAG------------YAGRGVQNKG 183
+G+ +L L + F DIH + L R + +
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 184 FKIGRITGLDPASPLFRQLLATSLVSLNSGDAH-------------YVD----------- 219
F S LFR ++ G+A Y +
Sbjct: 137 FDKK------SNSALFR--------AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 220 ----VIHS-------------DGARHWSEGLGLFEAIGH------SDY-------FPNGG 249
+I D + +++GL + E + + DY P G
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 250 LDQ----------PGCEHKKNAVLVSHLEGTMN------SSVVCNHIRAWKLFYESLKMS 293
+ Q G + L S+L+G ++V +W+ F+ S++ +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGE---LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 294 KQEDGCKFFAFHCPGGLKS 312
F G++
Sbjct: 300 IT------VLFFI--GVRC 310
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 33.2 bits (76), Expect = 0.077
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 153 FGADPQDIHIVGFSLGAHVAGYAG 176
+ +P+ + ++G S G H+A + G
Sbjct: 114 WQINPEQVFLLGCSAGGHLAAWYG 137
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 33.3 bits (76), Expect = 0.081
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 153 FGADPQDIHIVGFSLGAHVAGYAG 176
+ DPQ I GFS+G H+
Sbjct: 119 WHIDPQQITPAGFSVGGHIVALYN 142
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 32.1 bits (73), Expect = 0.20
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 153 FGADPQDIHIVGFSLGAHVAGYAG 176
D Q I + GFS G HV
Sbjct: 104 HHVDCQRIILAGFSAGGHVVATYN 127
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 30.9 bits (70), Expect = 0.37
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 141 RQLALLILDMVSFGADPQDIHIVGFSLGAHVAGYAGRGVQNKGFKIGRITGL 192
Q+ LI + + G + I + GFS G V + + +G + L
Sbjct: 99 DQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHT--AFRRYAQPLGGVLAL 148
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 30.4 bits (69), Expect = 0.62
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 147 ILDMVSFGADPQDIHIVGFSLGAHVA-GYAGR 177
+ ++I ++G+S+G + G A +
Sbjct: 73 FITNSEVTKHQKNITLIGYSMGGAIVLGVALK 104
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 30.1 bits (68), Expect = 0.63
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 142 QLALLILDMVSFGADPQDIHIVGFSLGAHVAGYAGRGVQNKGFKIGRITGLDPASPLFRQ 201
+ LI G D I + GFS G V + N +G + L +P F
Sbjct: 90 MVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHT--AFINWQGPLGGVIALSTYAPTFGD 147
Query: 202 LLATS 206
L S
Sbjct: 148 ELELS 152
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 30.3 bits (69), Expect = 0.72
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 156 DPQDIHIVGFSLGAHVAGYAGR 177
D ++ I+G S+ + +AG A
Sbjct: 96 DLVNVSIIGHSVSSIIAGIAST 117
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 29.8 bits (67), Expect = 1.2
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 154 GADPQDIHIVGFSLGAHVAGYA 175
D I +VG S G +++
Sbjct: 97 YVDAHSIAVVGLSYGGYLSALL 118
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 29.3 bits (66), Expect = 1.3
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 127 PSYALAATNTQIIGRQLALLILDMVS-FGADPQDIHIVGFSLGAHVAGYA 175
+ G L+ + ++ GA + IV S+G Y
Sbjct: 39 VDFWDKTGTNYNNGPVLSRFVQKVLDETGAKK--VDIVAHSMGGANTLYY 86
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 29.0 bits (65), Expect = 1.6
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 144 ALLILDMVSFGADPQDIHIVGFSLGAHVAGYAGRGVQNKGFKIGRITGLDPASPLFRQLL 203
A IL+ V ++I++VG + G VA + I ++ L PA+ L L
Sbjct: 105 ANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPD---LIKKVVLLAPAATLKGDAL 161
Query: 204 ATSLVSLNSGDAHYVDVI 221
+ + H D +
Sbjct: 162 EGNTQGVTYNPDHIPDRL 179
>3hc7_A Gene 12 protein, GP12; alpha/beta sandwich, cell adhesion; 2.00A
{Mycobacterium phage D29}
Length = 254
Score = 28.9 bits (64), Expect = 1.9
Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 25/114 (21%)
Query: 60 VSRPTKFIAHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILVD 119
+S+P F HG +G+ + A D+ +Q + NY A
Sbjct: 1 MSKPWLFTVHG---TGQPDPLGPGLPADTARDVLDIYRWQPIGNYPAAAF---------- 47
Query: 120 WEKGAAGPSYALAATNTQIIGRQLALLILDMVSFGADPQDIHIVGFSLGAHVAG 173
PS L L I + D + G+S GA V G
Sbjct: 48 ----PMWPSVEKGVAE-------LILQIELKLD-ADPYADFAMAGYSQGAIVVG 89
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: FMN;
2.30A {Streptococcus mutans} SCOP: d.90.1.1
Length = 208
Score = 28.4 bits (63), Expect = 2.3
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 21/92 (22%)
Query: 9 RRSVAPFGKKTPQSPEDIDTKFWLLTRENPTEPQFLKYSDDKISIKSSHFNVSRPTKFIA 68
RRS+ GK S ++ ++ P S FN S+ ++ +
Sbjct: 11 RRSIYALGKTVDLSKAELVALIQNAIKQAP-----------------SAFN-SQTSRALV 52
Query: 69 HGFKGSGKDRGAWNIVEALLEIVSTDLENFQM 100
G I + LE V T E F
Sbjct: 53 --LFGQDSQDFWNKIAYSELEKV-TPAEAFAG 81
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 28.4 bits (63), Expect = 2.9
Identities = 22/115 (19%), Positives = 30/115 (26%), Gaps = 25/115 (21%)
Query: 61 SRPTKFIAHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILVDW 120
T IA GF D A + E L +V D
Sbjct: 34 KNNTILIASGF-ARRMDHFA-GLAEYLST---------------------NGFHVFRYDS 70
Query: 121 EKGAAGPSYALAATNTQIIGRQLALLILDMVSFGADPQDIHIVGFSLGAHVAGYA 175
G S T G+ + + Q+I ++ SL A VA
Sbjct: 71 L-HHVGLSSGSIDEFTMTTGKNSLCTVYHWL-QTKGTQNIGLIAASLSARVAYEV 123
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 28.4 bits (64), Expect = 3.3
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 44 LKYSDDKISIKSSHFNVSRPTKFIAHGFKGSGKDRGAWNIVEAL 87
L Y ++ + S+ + ++I HG +GS G + L
Sbjct: 219 LSYPGQRVVLHSTVLAAAETARYIVHGTQGSYIKFGVDPQEDRL 262
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 28.0 bits (63), Expect = 3.3
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 40/118 (33%)
Query: 61 SRPTKFIAHGFKGSGKDRGAWN-IVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILVD 119
P + HG GSG D W ++ L + +D
Sbjct: 15 RTPLVVLVHGLLGSGAD---WQPVLSHLAR---------------------TQCAALTLD 50
Query: 120 W-----EKGAAGPSYALAATNTQIIGRQLALLILDMVSFGADPQDIHIVGFSLGAHVA 172
++A A ++ + + + +VG+SLG +
Sbjct: 51 LPGHGTNPERHCDNFAEAV----------EMIEQTVQAHVTSEVPVILVGYSLGGRLI 98
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 27.7 bits (62), Expect = 4.4
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 158 QDIHIVGFSLGAHVA-GYAGR 177
IH++G S+G H + + +
Sbjct: 107 AKIHLLGNSMGGHSSVAFTLK 127
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY
crystallography, metalloenzyme, calcium ION; HET: GDP;
1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1
d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A
1rle_A*
Length = 692
Score = 28.1 bits (62), Expect = 4.5
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 103 NYDKRAVIEDVNVILVDWEKGAAGPSYALAATNTQIIGRQLALLILDMVSFGADPQDI 160
N+D + +VN + W + N+ IGR I D+
Sbjct: 382 NFDMPFIFAEVNADRITWLYDNTTGKQWKNSVNSHTIGR----YISTKAVGSNARMDV 435
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 27.6 bits (61), Expect = 5.1
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 158 QDIHIVGFSLGAHVA-GYAGRGVQNKGFKIGRITGLDPASP 197
Q + S+G A + + GL+P +
Sbjct: 110 QSYLLCVHSIGGFAALQIMNQSSK----ACLGFIGLEPTTV 146
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 27.6 bits (62), Expect = 5.3
Identities = 10/50 (20%), Positives = 12/50 (24%), Gaps = 10/50 (20%)
Query: 156 DPQDIHIVGFSLGAHVAG-YAGRGVQNKGFKIGRITGL---DPASPLFRQ 201
Q VG S G Y R ++ PL Q
Sbjct: 87 GIQGAVHVGHSTGGGEVVRYMAR------HPEDKVAKAVLIAAVPPLMVQ 130
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 27.6 bits (62), Expect = 5.3
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 156 DPQDIHIVGFSLGAHVAGYAGR 177
D ++ VG S+GA + A
Sbjct: 88 DLKETVFVGHSVGALIGMLASI 109
>2czq_A Cutinase-like protein; alpha/beta hydrolase fold, hydrolase; HET:
CIT; 1.05A {Cryptococcus SP}
Length = 205
Score = 27.0 bits (59), Expect = 6.5
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 162 IVGFSLGAHVAGYAGRGVQNKGFKIGRITG-LDPASPLFRQ 201
+ G+S GA A + + G + G +P +
Sbjct: 81 LQGYSQGAAATVVALQQLGTSGAAFNAVKGVFLIGNPDHKS 121
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 27.2 bits (61), Expect = 6.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 156 DPQDIHIVGFSLGAHVA 172
P +G+SLG VA
Sbjct: 72 APDKAIWLGWSLGGLVA 88
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 27.2 bits (61), Expect = 7.1
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 158 QDIHIVGFSLGAHVAG-YAGRGVQNKGFKIGRITGL---DPASPLFRQ 201
+++ +VGFS+G Y R R+ GL +PLF Q
Sbjct: 86 KEVTLVGFSMGGGDVARYIAR------HGSARVAGLVLLGAVTPLFGQ 127
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC,
11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 27.3 bits (61), Expect = 7.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 43 FLKYSDDKISIKSSHFNVSRPTKFIAHGFKGS 74
L Y K+ + S ++F HG KGS
Sbjct: 218 VLNYPAHKVILHCSMLVAGGSSRFTVHGDKGS 249
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 26.7 bits (59), Expect = 8.9
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 153 FGADPQDIHIVGFSLGAHVAGYAG 176
D + +G+S GA+VA
Sbjct: 97 HDLDVHKMIAIGYSNGANVALNMF 120
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 26.8 bits (59), Expect = 8.9
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 147 ILDMVSFGADPQDIHIVGFSLGAHVAGYAGRGVQNKGFKIGRITGLDPASP 197
+++++ + + + +VG SLG G A KI L P
Sbjct: 62 LMELMESLSADEKVILVGHSLGGMNLGLAMEKYPQ---KIYAAVFLAAFMP 109
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 26.9 bits (60), Expect = 9.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 44 LKYSDDKISIKSSHFNVSRPTKFIAHGFKGS 74
L Y D K +K+SH KFI HG KGS
Sbjct: 214 LFYGDLKAIVKTSHLVKIDYPKFIVHGKKGS 244
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 26.5 bits (59), Expect = 10.0
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 10/48 (20%)
Query: 158 QDIHIVGFSLGAHVAG-YAGRGVQNKGFKIGRITGL---DPASPLFRQ 201
+D + GFS G Y GR R+ PL +
Sbjct: 86 RDAVLFGFSTGGGEVARYIGR------HGTARVAKAGLISAVPPLMLK 127
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,920,003
Number of extensions: 297939
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 51
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)