RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18203
(316 letters)
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 338
Score = 238 bits (607), Expect = 2e-77
Identities = 109/326 (33%), Positives = 168/326 (51%), Gaps = 48/326 (14%)
Query: 2 VGCFSI-------PRRSVAPFGKKTPQSPEDIDTKFWLLTRENPTEPQFLKYSDDKISIK 54
+GCFS +R + F P SPEDIDT+F L T ENP Q + ++ +IK
Sbjct: 8 LGCFSNDKPWAGMLQRPLKIF----PWSPEDIDTRFLLYTNENPNNYQKISATEPD-TIK 62
Query: 55 SSHFNVSRPTKFIAHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVN 114
S+F + R T+FI HGF G+D ++ + + ++ E VN
Sbjct: 63 FSNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQV--------------------EKVN 102
Query: 115 VILVDWEKGAAGPSYALAATNTQIIGRQLALLI-LDMVSFGADPQDIHIVGFSLGAHVAG 173
I VDW +G+ Y A+ NT+++G ++A L+ + G P+++H++G SLGAHV G
Sbjct: 103 CICVDWRRGSRTE-YTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVG 161
Query: 174 YAGRGVQNKGFKIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSE-G 232
AGR ++ +GRITGLDPA P F+ V L+ DA +VDVIH+D A G
Sbjct: 162 EAGRRLE---GHVGRITGLDPAEPCFQG--LPEEVRLDPSDAMFVDVIHTDSAPIIPYLG 216
Query: 233 LGLFEAIGHSDYFPNGGLDQPGCEHK--KNAVLVSHLEGTMNSSVVCNHIRAWKLFYESL 290
G+ + +GH D+FPNGG + PGC+ V ++ + + V CNH+R++K + S+
Sbjct: 217 FGMSQKVGHLDFFPNGGKEMPGCQKNILSTIVDINGIWEGTQNFVACNHLRSYKYYASSI 276
Query: 291 KMSKQEDGCKFFAFHCPGGLKSFKLG 316
+ F + C + F+
Sbjct: 277 L-----NPDGFLGYPC-SSYEKFQQN 296
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 337
Score = 232 bits (593), Expect = 2e-75
Identities = 105/327 (32%), Positives = 162/327 (49%), Gaps = 49/327 (14%)
Query: 1 KVGCFSI-------PRRSVAPFGKKTPQSPEDIDTKFWLLTRENPTEPQFLKYSDDKISI 53
++GCFS R + P SPE I T+F L T +NP Q L SD +I
Sbjct: 7 QIGCFSDAEPWAGTAIRPLKVL----PWSPERIGTRFLLYTNKNPNNFQTLLPSDPS-TI 61
Query: 54 KSSHFNVSRPTKFIAHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDV 113
+S+F + T+FI HGF G++ ++ + + ++ E+V
Sbjct: 62 GASNFQTDKKTRFIIHGFIDKGEENWLLDMCKNMFKV--------------------EEV 101
Query: 114 NVILVDWEKGAAGPSYALAATNTQIIGRQLA-LLILDMVSFGADPQDIHIVGFSLGAHVA 172
N I VDW+KG+ SY AA N +++G Q+A +L + ++ P + ++G SLGAHVA
Sbjct: 102 NCICVDWKKGSQ-TSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVA 160
Query: 173 GYAGRGVQNKGFKIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSE- 231
G AG + +GRITGLDP F+ V L+ DA +VDVIH+D A
Sbjct: 161 GEAGS----RTPGLGRITGLDPVEASFQG--TPEEVRLDPTDADFVDVIHTDAAPLIPFL 214
Query: 232 GLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLVSH--LEGTMNSSVVCNHIRAWKLFYES 289
G G + +GH D+FPNGG + PGC+ + +V + V CNH+R++K + ES
Sbjct: 215 GFGTSQQMGHLDFFPNGGEEMPGCKKNALSQIVDLDGIWEGTRDFVACNHLRSYKYYSES 274
Query: 290 LKMSKQEDGCKFFAFHCPGGLKSFKLG 316
+ + F ++ C ++F+
Sbjct: 275 IL-----NPDGFASYPC-ASYRAFESN 295
>d1qoza_ c.69.1.30 (A:) Acetylxylan esterase {Trichoderma reesei
[TaxId: 51453]}
Length = 207
Score = 29.6 bits (66), Expect = 0.34
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 160 IHIVGFSLGAHVAGYAGRGVQNKGFKIGRITGLDPASP 197
+ +VG+S GA + A G + G I A
Sbjct: 84 LVLVGYSQGAQIFDNALCGGGDPGEGITNTAVPLTAGA 121
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 30.0 bits (67), Expect = 0.38
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 152 SFGADPQDIHIVGFSLGAHVAGYAG 176
+F +P + + G + G ++A G
Sbjct: 5 AFNVNPNSVSVSGLASGGYMAAQLG 29
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 28.4 bits (62), Expect = 1.3
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 11/45 (24%)
Query: 45 KYSDDKISIKSSHFNVSRPTKFIAHGFKGSGKDRGAWNIVEALLE 89
+ + +I K N P+ S K R N++ +
Sbjct: 21 RIGNGRILAKVESRN---PS--------FSVKCRIGANMIWDAEK 54
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 28.3 bits (62), Expect = 1.4
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 73 GSGKDRGAWNIVEALLE 89
S KDR ++++ +
Sbjct: 41 SSVKDRIGFSMISDAEK 57
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 28.0 bits (61), Expect = 1.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 73 GSGKDRGAWNIVEALLE 89
GS KDR AW +++ E
Sbjct: 37 GSIKDRPAWYMIKDAEE 53
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 28.0 bits (61), Expect = 1.5
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 73 GSGKDRGAWNIVEALLE 89
S K R N+V +
Sbjct: 38 YSVKCRIGANMVWQAEK 54
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 28.0 bits (61), Expect = 1.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 73 GSGKDRGAWNIVEALLE 89
GS KDR A +++ +
Sbjct: 37 GSVKDRAALSMIVEAEK 53
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 27.4 bits (60), Expect = 2.2
Identities = 19/161 (11%), Positives = 43/161 (26%), Gaps = 33/161 (20%)
Query: 55 SSHFNVSRPTKFIAHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVN 114
+S +VS+P + G +G N + +
Sbjct: 25 ASPSSVSKPILLV-PGTGTTGPQSFDSNWIPLSTQ---------------------LGYT 62
Query: 115 VILVDWEKGAAGPSYALAATNTQIIGRQLALLILDMVSFGADPQDIHIVGFSLGAHVAGY 174
+ + + I + + + + + ++ +S G VA +
Sbjct: 63 PCWISPPPFMLNDTQVNT--------EYMVNAITALYAGSGNNK-LPVLTWSQGGLVAQW 113
Query: 175 AGRGVQNKGFKIGRITGLDPASPLFRQLLATSLVSLNSGDA 215
+ K+ R+ A +LA L +L
Sbjct: 114 GLTFFPSIRSKVDRLMAF--APDYKGTVLAGPLDALAVSAP 152
>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260
{Streptococcus mutans [TaxId: 1309]}
Length = 199
Score = 27.1 bits (59), Expect = 2.3
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 9 RRSVAPFGKKTPQSPEDIDTKFWLLTRENPT 39
RRS+ GK S ++ ++ P+
Sbjct: 10 RRSIYALGKTVDLSKAELVALIQNAIKQAPS 40
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 27.2 bits (59), Expect = 2.8
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 73 GSGKDRGAWNIVEALLE 89
GS KDR + ++E
Sbjct: 74 GSVKDRISLRMIEDAER 90
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 27.0 bits (59), Expect = 3.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 73 GSGKDRGAWNIVEALLE 89
GS KDR A ++ +
Sbjct: 34 GSVKDRPALFMILDAEK 50
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 26.8 bits (58), Expect = 3.6
Identities = 20/116 (17%), Positives = 29/116 (25%), Gaps = 25/116 (21%)
Query: 61 SRPTKFIAHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILVDW 120
T IA GF + LS +V D
Sbjct: 31 KNNTILIASGFARRMDHFAGL----------------AEYLSTNG-------FHVFRYDS 67
Query: 121 EKGAAGPSYALAATNTQIIGRQLALLILDMVSFGADPQDIHIVGFSLGAHVAGYAG 176
G S T + + +L + Q+I ++ SL A VA
Sbjct: 68 -LHHVGLSSGSIDEFT-MTTGKNSLCTVYHWLQTKGTQNIGLIAASLSARVAYEVI 121
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 26.7 bits (58), Expect = 4.6
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 73 GSGKDRGAWNIVEALLE 89
S KDR A I+ L
Sbjct: 123 LSVKDRPAVEIISRLSR 139
>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS
(MetA) {Bacillus cereus [TaxId: 1396]}
Length = 281
Score = 26.1 bits (57), Expect = 5.1
Identities = 16/104 (15%), Positives = 26/104 (25%), Gaps = 18/104 (17%)
Query: 162 IVGFSLGAHVAGYAGRGVQ-----NKGFKIGRITGLDPASPLFRQLLATSLVSLNSGDAH 216
+ GA Y GVQ K F + + L + +
Sbjct: 122 TLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHEVREQHVKLLQGFDELFFAPHSRHTEV 181
Query: 217 YVDVI--HSDGARHWSE---GLGLFEAI--------GHSDYFPN 247
I + + G+ L GHS+Y +
Sbjct: 182 RESDIREVKELTLLANSEEAGVHLVIGQEGRQVFALGHSEYSCD 225
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 26.4 bits (57), Expect = 5.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 73 GSGKDRGAWNIVEALLE 89
S K RGA+ ++ L E
Sbjct: 55 HSFKLRGAYAMMAGLTE 71
>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain
{Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Length = 321
Score = 25.9 bits (57), Expect = 7.3
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 103 NYDKRAVIEDVNVILVDWEKGAAGPSYALAATNTQIIGRQL 143
N+D + +VN + W + N+ IGR +
Sbjct: 242 NFDMPFIFAEVNADRITWLYDNTTGKQWKNSVNSHTIGRYI 282
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 25.9 bits (55), Expect = 7.6
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 73 GSGKDRGAWNIVEALLE 89
GS K RG + + +
Sbjct: 35 GSFKIRGIGHFCKRWAK 51
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 279
Score = 25.6 bits (56), Expect = 9.2
Identities = 14/116 (12%), Positives = 31/116 (26%), Gaps = 22/116 (18%)
Query: 61 SRPTKFI-AHGFKGSGKDRGAWNIVEALLEIVSTDLENFQMLSNYDKRAVIEDVNVILVD 119
P + HG S + + ++ ++E I ++V+ ++
Sbjct: 3 PAPLPLVIWHGMGDSCCNPLSMGAIKKMVE------------------KKIPGIHVLSLE 44
Query: 120 WEKGAAGPSYALAATNTQIIGRQLALLILDMVSFGADPQDIHIVGFSLGAHVAGYA 175
K N + ++ Q + +GFS G
Sbjct: 45 IGKTLREDVENSFFLNVNSQVTTVCQILAKD---PKLQQGYNAMGFSQGGQFLRAV 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,192,458
Number of extensions: 53929
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 21
Length of query: 316
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,240,546
Effective search space: 286566126
Effective search space used: 286566126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)