BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18204
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/153 (69%), Positives = 126/153 (82%)
Query: 1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
MVKLTA+LI Q QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
PLL+RL L NNNRI RI E L + LP+L LILT N++ ELGDLDPL++L L LC+
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120
Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 258 VQEKQEAAALFKSKKGKELQKEISK 282
++E+QEA +FK K+G +L K+I++
Sbjct: 152 LKERQEAEKMFKGKRGAQLAKDIAR 176
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%)
Query: 71 FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH 130
+ NRI E L E PNL+ L L+GN I++L ++PL L LK+L L + V N
Sbjct: 76 LSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNA 135
Query: 131 YRLYVAFKLPQVKLLD 146
YR V LPQV LD
Sbjct: 136 YRENVFKLLPQVMYLD 151
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%)
Query: 74 NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRL 133
NRI + L E LPNL L L+GN ++++ L+PL L LK+L L + V N YR
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE 140
Query: 134 YVAFKLPQVKLLD 146
V LPQ+ LD
Sbjct: 141 SVFKLLPQLTYLD 153
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 71 FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH 130
++NR+ E L E PNL L L+GN I++L ++PL L LK+L L + V N
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Query: 131 YRLYVAFKLPQVKLLD 146
YR V LPQ+ LD
Sbjct: 131 YRENVFKLLPQLTYLD 146
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 31/132 (23%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
R L L I IEN+ A D + + S N I + G L L L+ +NN+I
Sbjct: 73 RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN--- 129
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN-------RPHYRLY 134
G++D L+ L KL+ L L NP+ N YR+
Sbjct: 130 ---------------------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168
Query: 135 VAFKLPQVKLLD 146
V +LP +K LD
Sbjct: 169 VVKRLPNLKKLD 180
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 31/132 (23%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
R L L I IEN+ A D + + S N I + G L L L+ +NN+I
Sbjct: 74 RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN--- 130
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN-------RPHYRLY 134
G++D L+ L KL+ L L NP+ N YR+
Sbjct: 131 ---------------------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 169
Query: 135 VAFKLPQVKLLD 146
V +LP +K LD
Sbjct: 170 VVKRLPNLKKLD 181
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ D I +N+DI+ + G L L+ L +NN+I I+ + LPN+ L L GN
Sbjct: 43 LNSIDQIIANNSDIKSVQGIQYLPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGN-- 98
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPV 125
+L D+ PL+ L L L L N V
Sbjct: 99 -KLTDIKPLANLKNLGWLFLDENKV 122
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N I I+G L +L L+ NN+I I + L L+TL L N ++ D+ PL+
Sbjct: 142 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAG 196
Query: 112 LPKLKTLCLLHN 123
L KL+ L L N
Sbjct: 197 LTKLQNLYLSKN 208
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 47 IDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQEN------LPNLETLILTGNNI 100
+D S+N +R + P L L CL +++ ++N EN LP L+ L+L N +
Sbjct: 468 LDLSHNRLRALP--PALAALRCL-----EVLQASDNALENVDGVANLPRLQELLLCNNRL 520
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQV 142
Q+ + PL + P+L L L N + + +A LP V
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ I+FSNN + I L +L + NNN+I I NL NL L L N
Sbjct: 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-- 122
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPV 125
++ D+DPL L L L L N +
Sbjct: 123 -QITDIDPLKNLTNLNRLELSSNTI 146
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL--ILTGN 98
LDQ T+ I+ IDG L L+ + F+NN++ I L NL L IL N
Sbjct: 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNN 99
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHNPV 125
N ++ D+ PL+ L L L L +N +
Sbjct: 100 N--QIADITPLANLTNLTGLTLFNNQI 124
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 24/123 (19%)
Query: 23 ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA-- 80
EL L G ++ I + A+L +D +NN I + L +L+ L N+I I+
Sbjct: 225 ELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 283
Query: 81 ------ENLQ------------ENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
NL+ NL NL L L NNI D+ P+S+L KL+ L +
Sbjct: 284 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFYN 340
Query: 123 NPV 125
N V
Sbjct: 341 NKV 343
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
A L + +D S+N + I L L L NN+I I L NL+ L L GN
Sbjct: 174 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 231
Query: 99 NIQELGDLDPLSTLPKL 115
++++G L L+ L L
Sbjct: 232 QLKDIGTLASLTNLTDL 248
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N+I I L +L LFF NN++ ++ NL N+ L G+N ++ DL PL+
Sbjct: 319 NNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLS-AGHN--QISDLTPLAN 373
Query: 112 LPKLKTLCLLHNPVINRP-HYRLYVAF 137
L ++ L L N P +Y+ V+
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSI 400
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ I+FSNN + I L +L + NNN+I I NL NL L L N I
Sbjct: 66 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 123
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPV 125
D+DPL L L L L N +
Sbjct: 124 T---DIDPLKNLTNLNRLELSSNTI 145
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL--ILTGN 98
LDQ T+ I+ IDG L L+ + F+NN++ I L NL L IL N
Sbjct: 44 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNN 98
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHNPV 125
N ++ D+ PL+ L L L L +N +
Sbjct: 99 N--QIADITPLANLTNLTGLTLFNNQI 123
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 24/123 (19%)
Query: 23 ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA-- 80
EL L G ++ I + A+L +D +NN I + L +L+ L N+I I+
Sbjct: 224 ELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 282
Query: 81 ------ENLQ------------ENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
NL+ NL NL L L NNI D+ P+S+L KL+ L +
Sbjct: 283 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFAN 339
Query: 123 NPV 125
N V
Sbjct: 340 NKV 342
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
A L + +D S+N + I L L L NN+I I L NL+ L L GN
Sbjct: 173 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 230
Query: 99 NIQELGDLDPLSTLPKL 115
++++G L L+ L L
Sbjct: 231 QLKDIGTLASLTNLTDL 247
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N+I I L +L LFF NN++ ++ NL N+ L G+N ++ DL PL+
Sbjct: 318 NNISDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLS-AGHN--QISDLTPLAN 372
Query: 112 LPKLKTLCLLHNPVINRP-HYRLYVAF 137
L ++ L L N P +Y+ V+
Sbjct: 373 LTRITQLGLNDQAWTNAPVNYKANVSI 399
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 47 IDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQEN------LPNLETLILTGNNI 100
+D S+N +R + P L L CL +++ ++N EN LP L+ L+L N +
Sbjct: 468 LDLSHNRLRALP--PALAALRCL-----EVLQASDNALENVDGVANLPRLQELLLCNNRL 520
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQV 142
Q+ + PL + P+L L L N + + +A LP V
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ I+FSNN + I L +L + NNN+I I NL NL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-- 117
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPV 125
++ D+DPL L L L L N +
Sbjct: 118 -QITDIDPLKNLTNLNRLELSSNTI 141
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL--ILTGN 98
LDQ T+ I+ IDG L L+ + F+NN++ I L NL L IL N
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNN 94
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHNPV 125
N ++ D+ PL+ L L L L +N +
Sbjct: 95 N--QIADITPLANLTNLTGLTLFNNQI 119
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 24/123 (19%)
Query: 23 ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA-- 80
EL L G ++ I + A+L +D +NN I + L +L+ L N+I I+
Sbjct: 220 ELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 278
Query: 81 ------ENLQ------------ENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
NL+ NL NL L L NNI D+ P+S+L KL+ L +
Sbjct: 279 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFYN 335
Query: 123 NPV 125
N V
Sbjct: 336 NKV 338
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
A L + +D S+N + I L L L NN+I I L NL+ L L GN
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 226
Query: 99 NIQELGDLDPLSTLPKL 115
++++G L L+ L L
Sbjct: 227 QLKDIGTLASLTNLTDL 243
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N+I I L +L LFF NN++ ++ NL N+ L G+N ++ DL PL+
Sbjct: 314 NNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLS-AGHN--QISDLTPLAN 368
Query: 112 LPKLKTLCLLHNPVINRP-HYRLYVAF 137
L ++ L L N P +Y+ V+
Sbjct: 369 LTRITQLGLNDQAWTNAPVNYKANVSI 395
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ I+FSNN + I L +L + NNN+I I NL NL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-- 117
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPV 125
++ D+DPL L L L L N +
Sbjct: 118 -QITDIDPLKNLTNLNRLELSSNTI 141
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL--ILTGN 98
LDQ T+ I+ IDG L L+ + F+NN++ I L NL L IL N
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNN 94
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHNPV 125
N ++ D+ PL+ L L L L +N +
Sbjct: 95 N--QIADITPLANLTNLTGLTLFNNQI 119
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 24/123 (19%)
Query: 23 ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA-- 80
EL L G ++ I + A+L +D +NN I + L +L+ L N+I I+
Sbjct: 221 ELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 279
Query: 81 ------ENLQ------------ENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
NL+ NL NL L L NNI D+ P+S+L KL+ L +
Sbjct: 280 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFYN 336
Query: 123 NPV 125
N V
Sbjct: 337 NKV 339
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
A L + +D S+N + I L L L NN+I I L NL+ L L GN
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 99 NIQELGDLDPLSTLPKL 115
++++G L L+ L L
Sbjct: 228 QLKDIGTLASLTNLTDL 244
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N+I I L +L LFF NN++ ++ NL N+ L G+N ++ DL PL+
Sbjct: 315 NNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLS-AGHN--QISDLTPLAN 369
Query: 112 LPKLKTLCLLHNPVINRP-HYRLYVAF 137
L ++ L L N P +Y+ V+
Sbjct: 370 LTRITQLGLNDQAWTNAPVNYKANVSI 396
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ I+FSNN + I L +L + NNN+I I NL NL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-- 117
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPV 125
++ D+DPL L L L L N +
Sbjct: 118 -QITDIDPLKNLTNLNRLELSSNTI 141
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL--ILTGN 98
LDQ T+ I+ IDG L L+ + F+NN++ I L NL L IL N
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNN 94
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHNPV 125
N ++ D+ PL+ L L L L +N +
Sbjct: 95 N--QIADITPLANLTNLTGLTLFNNQI 119
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
A L + +D S+N + I L L L NN+I I L NL+ L L GN
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 99 NIQELGDLDPLSTLPKL 115
++++G L L+ L L
Sbjct: 228 QLKDIGTLASLTNLTDL 244
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 24/123 (19%)
Query: 23 ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA-- 80
EL L G ++ I + A+L +D +NN I + L +L+ L N+I I+
Sbjct: 221 ELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 279
Query: 81 ------ENLQ------------ENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
NL+ NL NL L L NNI D+ P+S+L KL+ L +
Sbjct: 280 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFSN 336
Query: 123 NPV 125
N V
Sbjct: 337 NKV 339
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N+I I L +L LFF+NN++ ++ NL N+ L G+N ++ DL PL+
Sbjct: 315 NNISDISPVSSLTKLQRLFFSNNKVSDVSS--LANLTNINWLS-AGHN--QISDLTPLAN 369
Query: 112 LPKLKTLCLLHNPVINRP-HYRLYVAF 137
L ++ L L N P +Y+ V+
Sbjct: 370 LTRITQLGLNDQAWTNAPVNYKANVSI 396
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ I+FSNN + I L +L + NNN+I I NL NL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-- 117
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPV 125
++ D+DPL L L L L N +
Sbjct: 118 -QITDIDPLKNLTNLNRLELSSNTI 141
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL--ILTGN 98
LDQ T+ I+ IDG L L+ + F+NN++ I L NL L IL N
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNN 94
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHNPV 125
N ++ D+ PL+ L L L L +N +
Sbjct: 95 N--QIADITPLANLTNLTGLTLFNNQI 119
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
A L + +D S+N + I L L L NN+I I L NL+ L L GN
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 226
Query: 99 NIQELGDLDPLSTLPKL 115
++++G L L+ L L
Sbjct: 227 QLKDIGTLASLTNLTDL 243
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 24/123 (19%)
Query: 23 ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA-- 80
EL L G ++ I + A+L +D +NN I + L +L+ L N+I I+
Sbjct: 220 ELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 278
Query: 81 ------ENLQ------------ENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
NL+ NL NL L L NNI D+ P+S+L KL+ L +
Sbjct: 279 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFSN 335
Query: 123 NPV 125
N V
Sbjct: 336 NKV 338
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N+I I L +L LFF+NN++ ++ NL N+ L G+N ++ DL PL+
Sbjct: 314 NNISDISPVSSLTKLQRLFFSNNKVSDVSS--LANLTNINWLS-AGHN--QISDLTPLAN 368
Query: 112 LPKLKTLCLLHNPVINRP-HYRLYVAF 137
L ++ L L N P +Y+ V+
Sbjct: 369 LTRITQLGLNDQAWTNAPVNYKANVSI 395
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ I+FSNN + I L +L + NNN+I I NL NL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-- 117
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPV 125
++ D+DPL L L L L N +
Sbjct: 118 -QITDIDPLKNLTNLNRLELSSNTI 141
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL--ILTGN 98
LDQ T+ I+ IDG L L+ + F+NN++ I L NL L IL N
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNN 94
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHNPV 125
N ++ D+ PL+ L L L L +N +
Sbjct: 95 N--QIADITPLANLTNLTGLTLFNNQI 119
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 24/123 (19%)
Query: 23 ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA-- 80
EL L G ++ I + A+L +D +NN I + L +L+ L N+I I+
Sbjct: 221 ELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 279
Query: 81 ------ENLQ------------ENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
NL+ NL NL L L NNI D+ P+S+L KL+ L +
Sbjct: 280 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI---SDISPVSSLTKLQRLFFYN 336
Query: 123 NPV 125
N V
Sbjct: 337 NKV 339
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
A L + +D S+N + I L L L NN+I I L NL+ L L GN
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN 227
Query: 99 NIQELGDLDPLSTLPKL 115
++++G L L+ L L
Sbjct: 228 QLKDIGTLASLTNLTDL 244
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N+I I L +L LFF NN++ ++ NL N+ L G+N ++ DL PL+
Sbjct: 315 NNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLS-AGHN--QISDLTPLAN 369
Query: 112 LPKLKTLCLLHNPVINRP-HYRLYVAF 137
L ++ L L N P +Y+ V+
Sbjct: 370 LTRITQLGLNDQAWTNAPVNYKANVSI 396
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLK--RLSCL 69
C++ + + ++L YKIP +N+ + +D S N +R + + L L
Sbjct: 5 CVEVVPNITYQCMELNFYKIP--DNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQVL 59
Query: 70 FFNNNRIVRIAENLQENLPNLETLILTGNNIQE--LGDLDPLSTLPKLKTL 118
+ I I + ++L +L TLILTGN IQ LG LS+L KL L
Sbjct: 60 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAL 110
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLK--RLSCL 69
C++ + + ++L YKIP +N+ + +D S N +R + + L L
Sbjct: 3 CVEVVPNITYQCMELNFYKIP--DNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 70 FFNNNRIVRIAENLQENLPNLETLILTGNNIQE--LGDLDPLSTLPKL 115
+ I I + ++L +L TLILTGN IQ LG LS+L KL
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLK--RLSCL 69
C++ + + ++L YKIP +N+ + +D S N +R + + L L
Sbjct: 5 CVEVVPNITYQCMELNFYKIP--DNLPFSTKN---LDLSWNPLRHLGSYSFFSFPELQVL 59
Query: 70 FFNNNRIVRIAENLQENLPNLETLILTGNNIQE--LGDLDPLSTLPKL 115
+ I I + ++L +L TLILTGN IQ LG LS+L KL
Sbjct: 60 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 107
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLK--RLSCL 69
C++ + + ++L YKIP +N+ + +D S N +R + + L L
Sbjct: 4 CVEVVPNITYQCMELNFYKIP--DNLPFSTKN---LDLSWNPLRHLGSYSFFSFPELQVL 58
Query: 70 FFNNNRIVRIAENLQENLPNLETLILTGNNIQE--LGDLDPLSTLPKL 115
+ I I + ++L +L TLILTGN IQ LG LS+L KL
Sbjct: 59 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 106
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLK--RLSCL 69
C++ + + ++L YKIP +N+ + +D S N +R + + L L
Sbjct: 27 CVEVVPNITYQCMELNFYKIP--DNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQVL 81
Query: 70 FFNNNRIVRIAENLQENLPNLETLILTGNNIQE--LGDLDPLSTLPKL 115
+ I I + ++L +L TLILTGN IQ LG LS+L KL
Sbjct: 82 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLK--RLSCL 69
C++ + + ++L YKIP +N+ + +D S N +R + + L L
Sbjct: 3 CVEVVPNITYQCMELNFYKIP--DNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 70 FFNNNRIVRIAENLQENLPNLETLILTGNNIQE--LGDLDPLSTLPKL 115
+ I I + ++L +L TLILTGN IQ LG LS+L KL
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N I I+G L +L L+ NN+I I + L L+TL L N I D+ PL+
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIS---DIVPLAG 173
Query: 112 LPKLKTLCLLHNPV 125
L KL+ L L N +
Sbjct: 174 LTKLQNLYLSKNHI 187
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 21/106 (19%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ D I +N+DI+ + G L ++ LF N N++ I NL NL L L N I
Sbjct: 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99
Query: 101 QE-------------------LGDLDPLSTLPKLKTLCLLHNPVIN 127
++ + D++ L LP+L++L L +N + +
Sbjct: 100 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD 145
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLK--RLSCL 69
C++ + + ++L YKIP +N+ + +D S N +R + + L L
Sbjct: 3 CVEVVPNITYQCMELNFYKIP--DNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 70 FFNNNRIVRIAENLQENLPNLETLILTGNNIQE--LGDLDPLSTLPKL 115
+ I I + ++L +L TLILTGN IQ LG LS+L KL
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 22 RELDLRGYKI-PVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVR 78
+ DL KI +++++ + + + + N+I KID F L L L + N +
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRP 129
I + ENL LE L L+ N+I+ LGD L LP LK L L N + + P
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKELALDTNQLKSVP 387
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N I I+G L +L L+ NN+I I + L L+TL L N ++ D+ PL+
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAG 176
Query: 112 LPKLKTLCLLHNPV 125
L KL+ L L N +
Sbjct: 177 LTKLQNLYLSKNHI 190
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ D I +N+DI+ + G L ++ LF N N++ I NL NL L L N +
Sbjct: 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102
Query: 101 QE-------------------LGDLDPLSTLPKLKTLCLLHNPV 125
++ + D++ L LP+L++L L +N +
Sbjct: 103 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 146
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLK--RLSCL 69
C++ + + +L YKIP +N+ + +D S N +R + + L L
Sbjct: 4 CVEVVPNITYQCEELNFYKIP--DNLPFSTKN---LDLSFNPLRHLGSYSFFSFPELQVL 58
Query: 70 FFNNNRIVRIAENLQENLPNLETLILTGNNIQE--LGDLDPLSTLPKL 115
+ I I + ++L +L TLILTGN IQ LG LS+L KL
Sbjct: 59 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 106
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N I I+G L +L L+ NN+I I + L L+TL L N ++ D+ PL+
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAC 171
Query: 112 LPKLKTLCLLHNPV 125
L KL+ L L N +
Sbjct: 172 LTKLQNLYLSKNHI 185
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ D I +N+DI+ + G L ++ LF N N++ I NL NL L L N +
Sbjct: 40 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 97
Query: 101 QE-------------------LGDLDPLSTLPKLKTLCLLHNPV 125
++ + D++ L LP+L++L L +N +
Sbjct: 98 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 141
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N I I+G L +L L+ NN+I I + L L+TL L N ++ D+ PL+
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAG 174
Query: 112 LPKLKTLCLLHNPV 125
L KL+ L L N +
Sbjct: 175 LTKLQNLYLSKNHI 188
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ D I +N+DI+ + G L ++ LF N N++ I NL NL L L N +
Sbjct: 43 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 100
Query: 101 QE-------------------LGDLDPLSTLPKLKTLCLLHNPV 125
++ + D++ L LP+L++L L +N +
Sbjct: 101 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 144
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 54 IRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLP 113
I K++ F L+ L L + N I I L NL TL L N + + + L
Sbjct: 78 IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN-GAFVYLS 136
Query: 114 KLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVK 151
KLK L L +NP+ + P Y AF ++P ++ LD ++K
Sbjct: 137 KLKELWLRNNPIESIPSY----AFNRIPSLRRLDLGELK 171
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N I I+G L +L L+ NN+I I + L L+TL L N ++ D+ PL+
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAG 176
Query: 112 LPKLKTLCLLHN 123
L KL+ L L N
Sbjct: 177 LTKLQNLYLSKN 188
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ D I +N+DI+ + G L ++ LF N N++ I NL NL L L N +
Sbjct: 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102
Query: 101 QE-------------------LGDLDPLSTLPKLKTLCLLHNPV 125
++ + D++ L LP+L++L L +N +
Sbjct: 103 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 146
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 9 IVQCMQYTNPVKDRELD------LRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL 62
++Q T+ V EL+ + G K+ I+ + L + ++ + N I I
Sbjct: 28 VLQKASVTDVVTQEELESITKLVVAGEKVASIQGI-EYLTNLEYLNLNGNQITDISPLSN 86
Query: 63 LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
L +L+ L+ N+I I+ +NL NL L L +NI D+ PL+ L K +L L
Sbjct: 87 LVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNI---SDISPLANLTKXYSLNL 139
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L + ++ +N I I L +L+ LF NNN++ + L NL TL L+ N+I
Sbjct: 264 LTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
Query: 101 QELGDLDPLSTLPK 114
D+ PL++L K
Sbjct: 324 T---DIRPLASLSK 334
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N I I+G L +L L+ NN+I I + L L+TL L N ++ D+ PL+
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAG 194
Query: 112 LPKLKTLCLLHNPV 125
L KL+ L L N +
Sbjct: 195 LTKLQNLYLSKNHI 208
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ D I +N+DI+ + G L ++ LF N N++ I NL NL L L N I
Sbjct: 63 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 120
Query: 101 QE-------------------LGDLDPLSTLPKLKTLCLLHNPV 125
++ + D++ L LP+L++L L +N +
Sbjct: 121 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 164
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N I I+G L +L L+ NN+I I + L L+TL L N ++ D+ PL+
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAG 194
Query: 112 LPKLKTLCLLHNPV 125
L KL+ L L N +
Sbjct: 195 LTKLQNLYLSKNHI 208
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ D I +N+DI+ + G L ++ LF N N++ I NL NL L L N I
Sbjct: 63 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 120
Query: 101 QE-------------------LGDLDPLSTLPKLKTLCLLHNPV 125
++ + D++ L LP+L++L L +N +
Sbjct: 121 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 164
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N I I+G L +L L+ NN+I I + L L+TL L N ++ D+ PL+
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAG 194
Query: 112 LPKLKTLCLLHNPV 125
L KL+ L L N +
Sbjct: 195 LTKLQNLYLSKNHI 208
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ D I +N+DI+ + G L ++ LF N N++ I NL NL L L N I
Sbjct: 63 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 120
Query: 101 QE-------------------LGDLDPLSTLPKLKTLCLLHNPV 125
++ + D++ L LP+L++L L +N +
Sbjct: 121 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 164
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 47 IDFSNNDIRKIDGFPLLK--RLSCLFFNNNRIVRIAENLQ-ENLPNLETLILTGNNIQEL 103
+D S N++ KI P +K RL L+ +NNR+V A NL + +P L+ L L+ N++ +
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLLHV 316
Query: 104 GDLDPLSTLPKLKTLCLLHNPVI 126
P +L+ L L HN ++
Sbjct: 317 ERNQP--QFDRLENLYLDHNSIV 337
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 47 IDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
++ N I+ I D F L+ L L + N + +I LP+L TL L N + +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 105 DLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVK 151
L KL+ L L +NP+ + P Y AF ++P ++ LD ++K
Sbjct: 100 T-QAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLRRLDLGELK 142
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 47 IDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
++ N I+ I D F L+ L L + N + +I LP+L TL L N + +
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 105 DLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVK 151
L KL+ L L +NP+ + P Y AF ++P ++ LD ++K
Sbjct: 100 T-QAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLRRLDLGELK 142
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N I I+G L +L L+ NN+I I + L L+TL L N ++ D+ PL+
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAG 171
Query: 112 LPKLKTLCLLHNPV 125
L KL+ L L N +
Sbjct: 172 LTKLQNLYLSKNHI 185
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ D I +N+DI+ + G L ++ LF N N++ I NL NL L L N I
Sbjct: 40 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 97
Query: 101 QE-------------------LGDLDPLSTLPKLKTLCLLHNPV 125
++ + D++ L LP+L++L L +N +
Sbjct: 98 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 141
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 27/111 (24%)
Query: 47 IDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
+D S+N + +D F L+ L L NN IV + N E++ L+ L L+ N I
Sbjct: 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF- 151
Query: 105 DLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
P + KLP++ LLD S KLK L
Sbjct: 152 ------------------------PVELIKDGNKLPKLMLLDLSSNKLKKL 178
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N I I+G L +L L+ NN+I I + L L+TL L N I+ + PL+
Sbjct: 120 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIV---PLAR 174
Query: 112 LPKLKTLCLLHNPV 125
L KL+ L L N +
Sbjct: 175 LTKLQNLYLSKNHI 188
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L+ D I +N+DI+ + G L ++ LF N N++ I NL NL L L N +
Sbjct: 43 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 100
Query: 101 QE-------------------LGDLDPLSTLPKLKTLCLLHNPV 125
++ + D++ L LP+L++L L +N +
Sbjct: 101 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI 144
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 47 IDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL- 103
+D +N + + F L +L L+ N+N++ + + + L NLETL +T N +Q L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 104 -GDLDPLSTLPKLK 116
G D L L +L+
Sbjct: 102 IGVFDQLVNLAELR 115
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 47 IDFSNNDIRKIDGFPLLK--RLSCLFFNNNRIVRIAENLQ-ENLPNLETLILTGNNIQEL 103
+D S N++ KI P +K RL L+ +NNR+V A NL + +P L+ L L+ N++ +
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLLHV 310
Query: 104 GDLDPLSTLPKLKTLCLLHNPVI 126
P +L+ L L HN ++
Sbjct: 311 ERNQP--QFDRLENLYLDHNSIV 331
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 49 FSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDP 108
N + I L L+ L N++ + + + L NL+ L+L N +Q L D
Sbjct: 70 LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-GV 128
Query: 109 LSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMF 160
L L L L HN + + P V KL + LD S +L++L +F
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPK---GVFDKLTNLTELDLSYNQLQSLPEGVF 177
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 41 LDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
L Q D + N ++ + F L +L L N N++ I + L NL+TL L+ N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 99 NIQEL--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
+Q + G D L KL+T+ L N LY++
Sbjct: 166 QLQSVPHGAFDRLG---KLQTITLFGNQFDCSRCETLYLS 202
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 71 FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
+NNRI I+ + + NL+ L+LT N I + + D S+L L+ L L +N + N
Sbjct: 59 LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSYNYLSN 114
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 47 IDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
+D NNDI ++ D F L+ L L NN+I +I E L L+ L ++ N++ E+
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 41 LDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
L Q D + N ++ + F L +L L N N++ I + L NL+TL L+ N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 99 NIQEL--GDLDPLSTLPKLKTLCLLHN 123
+Q + G D L KL+T+ L N
Sbjct: 166 QLQSVPHGAFDRLG---KLQTITLFGN 189
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 24 LDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL-----LKRLSCLFFNNNRIVR 78
LDL ++ + +G TL +D S N ++ PL L L L+ N +
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN---RLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRP 129
+ L P LE L L NN+ EL L+ L L TL L N + P
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 24 LDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL-----LKRLSCLFFNNNRIVR 78
LDL ++ + +G TL +D S N ++ PL L L L+ N +
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN---RLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRP 129
+ L P LE L L NN+ EL L+ L L TL L N + P
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 52 NDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLST 111
N + I L L+ L N++ + + + L NL+ L+L N +Q L D
Sbjct: 73 NKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-GVFDK 131
Query: 112 LPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMF 160
L L L L HN + + P V KL + LD +L++L +F
Sbjct: 132 LTNLTYLYLYHNQLQSLPK---GVFDKLTNLTRLDLDNNQLQSLPEGVF 177
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 24 LDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL-----LKRLSCLFFNNNRIVR 78
LDL ++ + +G TL +D S N ++ PL L L L+ N +
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN---RLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRP 129
+ L P LE L L NN+ EL L+ L L TL L N + P
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 60 FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
F L+ L+ L +NN I I E+L E L NLE L NN+ L
Sbjct: 476 FRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL 519
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKR----LSCLFFNNNRIVRIAENLQENLPNLETLI 94
TL T+D S+N ++ + PLL + L+ L + NR+ + L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 95 LTGNNIQELGDLDP--LSTLPKLKTLCLLHNPVINRP 129
L GN EL L P L+ PKL+ L L +N + P
Sbjct: 131 LKGN---ELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 71 FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
+NNRI I+ + + NL+ L+LT N I + + D S+L L+ L L +N + N
Sbjct: 33 LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSYNYLSN 88
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 49 FSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDP 108
NN++R D LK L L NN++ I + L LE L L GN I G
Sbjct: 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG--- 167
Query: 109 LSTLPKLKTLCLLHNPVINRP 129
L+ L K+ + L +N P
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEP 188
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 24 LDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL-----LKRLSCLFFNNNRIVR 78
LDL ++ + +G TL +D S N ++ PL L L L+ N +
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN---RLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRP 129
+ L P LE L L NN+ EL L+ L L TL L N + P
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKR----LSCLFFNNNRIVRIAENLQENLPNLETLI 94
TL T+D S+N ++ + PLL + L+ L + NR+ + L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 95 LTGNNIQELGDLDP--LSTLPKLKTLCLLHNPVINRP 129
L GN EL L P L+ PKL+ L L +N + P
Sbjct: 131 LKGN---ELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 24 LDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL-----LKRLSCLFFNNNRIVR 78
LDL ++ + +G TL +D S N ++ PL L L L+ N +
Sbjct: 83 LDLSHNQLQSLPLLGQTLPALTVLDVSFN---RLTSLPLGALRGLGELQELYLKGNELKT 139
Query: 79 IAENLQENLPNLETLILTGNNIQEL 103
+ L P LE L L NN+ EL
Sbjct: 140 LPPGLLTPTPKLEKLSLANNNLTEL 164
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 69 LFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKL 115
L NN+I I + +NL NL TLIL N I ++ G PL L +L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 69 LFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKL 115
L NN+I I + +NL NL TLIL N I ++ G PL L +L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 24 LDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIA 80
+D RG + I N+ T+ + I N I+ I F K+L + +NN+I +A
Sbjct: 16 VDCRGKGLTEIPTNLPETITE---IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 81 ENLQENLPNLETLILTGNNIQEL 103
+ + L +L +L+L GN I EL
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITEL 95
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKR----LSCLFFNNNRIVRIAENLQENLPNLETLI 94
TL T+D S+N ++ + PLL + L+ L + NR+ + L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 95 LTGNNIQELGDLDP--LSTLPKLKTLCLLHNPVINRP 129
L GN EL L P L+ PKL+ L L +N + P
Sbjct: 131 LKGN---ELKTLPPGLLTPTPKLEKLSLANNDLTELP 164
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 24 LDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIA 80
+D RG + I N+ T+ + I N I+ I F K+L + +NN+I +A
Sbjct: 16 VDCRGKGLTEIPTNLPETITE---IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 81 ENLQENLPNLETLILTGNNIQEL 103
+ + L +L +L+L GN I EL
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITEL 95
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKR----LSCLFFNNNRIVRIAENLQENLPNLETLI 94
TL T+D S+N ++ + PLL + L+ L + NR+ + L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 95 LTGNNIQELGDLDP--LSTLPKLKTLCLLHNPVINRP 129
L GN EL L P L+ PKL+ L L +N + P
Sbjct: 131 LKGN---ELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKR----LSCLFFNNNRIVRIAENLQENLPNLETLI 94
TL T+D S+N ++ + PLL + L+ L + NR+ + L L+ L
Sbjct: 74 GTLPVLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 95 LTGNNIQELGDLDP--LSTLPKLKTLCLLHNPVINRP 129
L GN EL L P L+ PKL+ L L +N + P
Sbjct: 131 LKGN---ELKTLPPGLLTPTPKLEKLSLANNQLTELP 164
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRI 76
N K EL+L G + + + A L T+D ++ I + L L L+ + N+I
Sbjct: 83 NLTKITELELSGNPLKNVSAI-AGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI 141
Query: 77 VRIA-----ENLQ------------ENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLC 119
I+ NLQ L NL L + ++ D+ PL++LP L +
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVH 201
Query: 120 LLHN 123
L +N
Sbjct: 202 LKNN 205
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
+D + +RK+D F LL+ FNN V+ L + ++E L+L +
Sbjct: 7 VLDDYQDAVRKLDCFSLLQDHEVKVFNNT--VKGVGQLAARVADVEALVLIRERTRVTRQ 64
Query: 106 LDPLSTLPKLKTL 118
L L LPKLK +
Sbjct: 65 L--LDRLPKLKII 75
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 71 FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL 106
F+N++ ++ +Q N P LE+L+LT N GDL
Sbjct: 285 FSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDL 320
>pdb|3IYD|C Chain C, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|4IGC|C Chain C, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|H Chain H, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1342
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 59 GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLP 113
G + +++ F++ ++R+AENL++ +P + T + G E+ +L L LP
Sbjct: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMP-IATPVFDGAKEAEIKELLKLGDLP 1205
>pdb|3LU0|C Chain C, Molecular Model Of Escherichia Coli Core Rna Polymerase
Length = 1342
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 59 GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLP 113
G + +++ F++ ++R+AENL++ +P + T + G E+ +L L LP
Sbjct: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMP-IATPVFDGAKEAEIKELLKLGDLP 1205
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 66 LSCLFFNNNRIVRIAE--NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
L L +NNR+ R+ + ++ + PNL+ L L+GN ++ +LD + L KL+ L L N
Sbjct: 172 LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGN 230
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 70 FFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL 106
F+N++ ++ +Q N P LE+L+LT N GDL
Sbjct: 273 IFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDL 309
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 44 FDTIDFSNNDIRKI---DGFPLLKRLSCLFFNN-NRIVRIAENLQENLPNLETLILTGNN 99
+ I+ S ND+ ++ D F L +L + N ++ I +NLPNL+ L+++
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115
Query: 100 IQELGDLDPLSTLPKL 115
I+ L D+ + +L K+
Sbjct: 116 IKHLPDVHKIHSLQKV 131
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 22/118 (18%)
Query: 17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRI 76
N K EL+L G + + + A L T+D ++ I + L L L+ + N+I
Sbjct: 89 NLTKITELELSGNPLKNVSAI-AGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI 147
Query: 77 VRIAENLQENLPNLETLILTGNNIQEL-------------------GDLDPLSTLPKL 115
I+ L NL+ L + N + +L D+ PL++LP L
Sbjct: 148 TNISP--LAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDISPLASLPNL 203
>pdb|1JQD|A Chain A, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|1JQD|B Chain B, Crystal Structure Analysis Of Human Histamine
Methyltransferase (Thr105 Polymorphic Variant) Complexed
With Adohcy And Histamine
pdb|2AOV|A Chain A, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOV|B Chain B, Histamine Methyltransferase Complexed With The Antifolate
Drug Metoprine
pdb|2AOX|A Chain A, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
pdb|2AOX|B Chain B, Histamine Methyltransferase (Primary Variant T105)
Complexed With The Acetylcholinesterase Inhibitor And
Altzheimer's Disease Drug Tacrine
Length = 292
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 389 QPISPSAEEVWKIKEAISKASSLEEIE 415
+ + PSAE++ K KE ++K S+LE ++
Sbjct: 86 EVVEPSAEQIAKYKELVAKTSNLENVK 112
>pdb|2AOU|B Chain B, Histamine Methyltransferase Complexed With The
Antimalarial Drug Amodiaquine
Length = 292
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 389 QPISPSAEEVWKIKEAISKASSLEEIE 415
+ + PSAE++ K KE ++K S+LE ++
Sbjct: 86 EVVEPSAEQIAKYKELVAKTSNLENVK 112
>pdb|2AOT|B Chain B, Histamine Methyltransferase Complexed With The
Antihistamine Drug Diphenhydramine
Length = 292
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 389 QPISPSAEEVWKIKEAISKASSLEEIE 415
+ + PSAE++ K KE ++K S+LE ++
Sbjct: 86 EVVEPSAEQIAKYKELVAKTSNLENVK 112
>pdb|2AOT|A Chain A, Histamine Methyltransferase Complexed With The
Antihistamine Drug Diphenhydramine
pdb|2AOU|A Chain A, Histamine Methyltransferase Complexed With The
Antimalarial Drug Amodiaquine
Length = 292
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 389 QPISPSAEEVWKIKEAISKASSLEEIE 415
+ + PSAE++ K KE ++K S+LE ++
Sbjct: 86 EVVEPSAEQIAKYKELVAKTSNLENVK 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,322,138
Number of Sequences: 62578
Number of extensions: 558012
Number of successful extensions: 1888
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1646
Number of HSP's gapped (non-prelim): 207
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)