Query psy18204
Match_columns 435
No_of_seqs 524 out of 3128
Neff 9.1
Searched_HMMs 29240
Date Sat Aug 17 01:30:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a9n_A U2A', U2A'; complex (nu 99.9 4E-23 1.4E-27 181.4 12.3 155 1-155 1-155 (176)
2 2ell_A Acidic leucine-rich nuc 99.8 2.1E-18 7.3E-23 149.8 10.9 140 15-154 20-161 (168)
3 1p9a_G Platelet glycoprotein I 99.7 5.7E-18 1.9E-22 160.7 12.9 157 19-180 31-193 (290)
4 2o6q_A Variable lymphocyte rec 99.7 1.4E-17 4.9E-22 156.1 13.8 175 19-199 37-219 (270)
5 2je0_A Acidic leucine-rich nuc 99.7 5.7E-18 1.9E-22 144.1 9.7 134 16-149 14-149 (149)
6 3m19_A Variable lymphocyte rec 99.7 1.9E-17 6.3E-22 153.7 13.1 150 19-172 35-192 (251)
7 3rfs_A Internalin B, repeat mo 99.7 2.3E-17 7.7E-22 155.0 12.9 152 17-173 39-195 (272)
8 2o6q_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 153.6 14.0 150 20-175 17-173 (270)
9 2v9t_B SLIT homolog 2 protein 99.7 2.6E-17 9E-22 149.6 12.6 131 19-153 32-165 (220)
10 3m19_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 151.4 13.8 137 14-154 54-193 (251)
11 3rfs_A Internalin B, repeat mo 99.7 2E-17 6.7E-22 155.4 11.0 157 11-172 55-218 (272)
12 3e6j_A Variable lymphocyte rec 99.7 4.4E-17 1.5E-21 149.1 12.6 126 22-154 22-149 (229)
13 1p9a_G Platelet glycoprotein I 99.7 3.4E-17 1.2E-21 155.3 12.2 152 14-174 5-163 (290)
14 1ozn_A Reticulon 4 receptor; N 99.7 5.4E-17 1.9E-21 153.3 12.9 151 18-172 31-190 (285)
15 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-16 4.3E-21 145.1 12.5 130 20-153 33-166 (220)
16 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-16 4.1E-21 150.9 12.8 158 14-175 51-217 (285)
17 2z62_A TOLL-like receptor 4, v 99.7 1.5E-16 5.1E-21 149.5 13.1 166 19-189 28-207 (276)
18 2z62_A TOLL-like receptor 4, v 99.7 1.4E-16 4.8E-21 149.7 12.8 162 14-175 47-216 (276)
19 2o6s_A Variable lymphocyte rec 99.7 2.3E-16 7.9E-21 141.8 13.3 132 18-153 27-161 (208)
20 1h6u_A Internalin H; cell adhe 99.7 1.2E-16 4.1E-21 152.8 12.0 147 15-172 59-208 (308)
21 2xot_A Amphoterin-induced prot 99.7 6.3E-17 2.2E-21 158.3 10.1 153 19-172 39-202 (361)
22 3e6j_A Variable lymphocyte rec 99.7 1.8E-16 6.2E-21 145.0 12.3 131 18-153 39-172 (229)
23 4g8a_A TOLL-like receptor 4; l 99.7 1.2E-16 4.2E-21 167.0 12.7 134 19-155 52-188 (635)
24 2v9t_B SLIT homolog 2 protein 99.7 1.8E-16 6E-21 144.2 11.4 146 21-172 13-165 (220)
25 1h6t_A Internalin B; cell adhe 99.7 2.6E-16 8.8E-21 149.3 12.1 146 17-173 44-192 (291)
26 3zyj_A Leucine-rich repeat-con 99.7 2.4E-16 8.1E-21 158.3 12.4 155 13-173 82-245 (440)
27 4ezg_A Putative uncharacterize 99.7 8.6E-17 2.9E-21 143.5 8.1 149 17-172 42-194 (197)
28 3zyi_A Leucine-rich repeat-con 99.7 3.7E-16 1.3E-20 157.5 13.4 156 12-173 92-256 (452)
29 3zyj_A Leucine-rich repeat-con 99.7 3.6E-16 1.2E-20 157.0 12.9 152 19-174 64-222 (440)
30 4fcg_A Uncharacterized protein 99.7 8.2E-17 2.8E-21 155.4 7.6 149 18-173 80-243 (328)
31 3zyi_A Leucine-rich repeat-con 99.7 4.6E-16 1.6E-20 156.7 13.2 153 18-174 74-233 (452)
32 4ezg_A Putative uncharacterize 99.7 6.3E-16 2.2E-20 137.9 12.3 131 14-153 61-194 (197)
33 2wfh_A SLIT homolog 2 protein 99.7 4.7E-16 1.6E-20 138.4 11.3 127 21-153 12-139 (193)
34 1h6u_A Internalin H; cell adhe 99.6 6.1E-16 2.1E-20 147.9 12.4 148 15-173 81-231 (308)
35 1xeu_A Internalin C; cellular 99.6 2.2E-16 7.5E-21 147.5 8.7 147 14-172 36-185 (263)
36 2v70_A SLIT-2, SLIT homolog 2 99.6 3.3E-16 1.1E-20 142.3 9.3 146 21-172 13-166 (220)
37 2xwt_C Thyrotropin receptor; s 99.6 1.9E-16 6.6E-21 145.5 7.7 151 18-174 30-195 (239)
38 2z66_A Variable lymphocyte rec 99.6 2.8E-16 9.6E-21 149.8 8.9 154 15-173 48-213 (306)
39 1h6t_A Internalin B; cell adhe 99.6 4.7E-16 1.6E-20 147.5 9.9 149 13-172 62-213 (291)
40 2xwt_C Thyrotropin receptor; s 99.6 3.8E-16 1.3E-20 143.6 7.7 155 14-175 50-221 (239)
41 1m9s_A Internalin B; cell inva 99.6 8.4E-16 2.9E-20 159.9 11.2 151 12-173 58-211 (605)
42 4fcg_A Uncharacterized protein 99.6 7.1E-16 2.4E-20 148.8 10.0 156 12-173 97-267 (328)
43 1w8a_A SLIT protein; signaling 99.6 1.1E-15 3.7E-20 135.8 10.3 127 21-153 10-139 (192)
44 2z80_A TOLL-like receptor 2, v 99.6 1.9E-15 6.3E-20 147.2 12.8 151 19-172 52-211 (353)
45 2o6s_A Variable lymphocyte rec 99.6 2.4E-15 8.1E-20 135.2 12.5 146 21-172 9-161 (208)
46 1ogq_A PGIP-2, polygalacturona 99.6 4.8E-16 1.7E-20 149.0 8.1 155 12-172 94-257 (313)
47 2id5_A Lingo-1, leucine rich r 99.6 2.1E-15 7.2E-20 152.8 13.1 136 14-153 51-189 (477)
48 3o6n_A APL1; leucine-rich repe 99.6 1.4E-15 4.9E-20 150.1 11.6 131 19-153 45-178 (390)
49 2z80_A TOLL-like receptor 2, v 99.6 9.9E-16 3.4E-20 149.2 9.8 156 14-173 71-236 (353)
50 2z66_A Variable lymphocyte rec 99.6 9.7E-16 3.3E-20 146.1 9.4 157 14-175 73-239 (306)
51 2o6r_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 130.3 12.5 128 20-153 8-137 (177)
52 1xeu_A Internalin C; cellular 99.6 2.6E-15 8.8E-20 140.3 11.6 131 13-155 57-187 (263)
53 2id5_A Lingo-1, leucine rich r 99.6 2.4E-15 8.2E-20 152.4 12.2 153 18-174 31-191 (477)
54 3o6n_A APL1; leucine-rich repe 99.6 2.5E-15 8.7E-20 148.3 12.0 172 16-188 66-301 (390)
55 3oja_B Anopheles plasmodium-re 99.6 2.3E-15 7.9E-20 157.0 12.0 159 16-175 72-294 (597)
56 1wwl_A Monocyte differentiatio 99.6 1.4E-15 4.8E-20 145.6 9.4 174 16-195 118-306 (312)
57 4glp_A Monocyte differentiatio 99.6 2.4E-16 8.3E-21 150.8 3.9 174 14-189 86-279 (310)
58 3oja_B Anopheles plasmodium-re 99.6 2.3E-15 7.9E-20 157.0 11.6 151 17-171 49-204 (597)
59 2xot_A Amphoterin-induced prot 99.6 2.9E-15 1E-19 146.4 11.4 135 15-153 59-202 (361)
60 1xku_A Decorin; proteoglycan, 99.6 4.4E-15 1.5E-19 143.1 12.1 148 19-173 121-277 (330)
61 1ogq_A PGIP-2, polygalacturona 99.6 1E-15 3.5E-20 146.7 7.4 150 19-173 50-211 (313)
62 2wfh_A SLIT homolog 2 protein 99.6 6.9E-15 2.4E-19 130.8 12.3 109 18-127 30-140 (193)
63 1wwl_A Monocyte differentiatio 99.6 3.7E-16 1.3E-20 149.6 4.2 159 17-175 93-269 (312)
64 1xku_A Decorin; proteoglycan, 99.6 8.5E-15 2.9E-19 141.1 13.3 147 19-172 52-205 (330)
65 2ft3_A Biglycan; proteoglycan, 99.6 6.1E-15 2.1E-19 142.3 12.0 86 14-101 73-160 (332)
66 1dce_A Protein (RAB geranylger 99.6 4E-15 1.4E-19 153.8 11.1 125 20-147 442-567 (567)
67 4fmz_A Internalin; leucine ric 99.6 8.4E-15 2.9E-19 142.0 12.7 149 15-174 151-326 (347)
68 4glp_A Monocyte differentiatio 99.6 2E-15 6.8E-20 144.4 8.0 156 16-172 114-285 (310)
69 3vq2_A TLR4, TOLL-like recepto 99.6 5.8E-15 2E-19 154.0 11.7 155 18-177 31-199 (606)
70 3oja_A Leucine-rich immune mol 99.6 1.3E-15 4.5E-20 154.9 6.6 168 18-188 33-220 (487)
71 2z63_A TOLL-like receptor 4, v 99.6 7.8E-15 2.7E-19 151.7 12.1 153 18-175 27-193 (570)
72 4fmz_A Internalin; leucine ric 99.6 1.6E-14 5.6E-19 139.9 13.1 130 15-154 62-191 (347)
73 3vq2_A TLR4, TOLL-like recepto 99.6 4.1E-15 1.4E-19 155.1 9.2 134 15-153 346-486 (606)
74 2ft3_A Biglycan; proteoglycan, 99.6 1.4E-14 4.8E-19 139.7 12.3 132 12-153 95-230 (332)
75 3t6q_A CD180 antigen; protein- 99.6 6.3E-15 2.2E-19 153.8 10.5 158 18-179 32-199 (606)
76 4g8a_A TOLL-like receptor 4; l 99.6 1.1E-14 3.8E-19 152.1 12.4 143 13-155 70-216 (635)
77 3v47_A TOLL-like receptor 5B a 99.6 1.2E-14 4E-19 146.2 12.1 131 19-153 275-408 (455)
78 3o53_A Protein LRIM1, AGAP0063 99.6 1.3E-15 4.5E-20 146.2 4.5 170 17-189 32-221 (317)
79 1ziw_A TOLL-like receptor 3; i 99.5 1.3E-14 4.3E-19 153.6 11.9 160 14-176 400-601 (680)
80 3oja_A Leucine-rich immune mol 99.5 3.4E-15 1.2E-19 151.8 6.7 171 13-190 52-245 (487)
81 3v47_A TOLL-like receptor 5B a 99.5 2E-14 6.9E-19 144.5 12.2 80 89-172 276-360 (455)
82 2z81_A CD282 antigen, TOLL-lik 99.5 2.5E-14 8.5E-19 147.4 13.1 125 17-153 332-464 (549)
83 3o53_A Protein LRIM1, AGAP0063 99.5 2.8E-15 9.5E-20 143.9 5.5 156 14-176 53-231 (317)
84 1m9s_A Internalin B; cell inva 99.5 1.5E-14 5E-19 150.6 11.1 130 15-155 83-212 (605)
85 3t6q_A CD180 antigen; protein- 99.5 2.8E-14 9.7E-19 148.8 12.6 139 12-154 50-193 (606)
86 1ziw_A TOLL-like receptor 3; i 99.5 4.3E-14 1.5E-18 149.5 14.0 155 15-173 450-623 (680)
87 4ecn_A Leucine-rich repeat pro 99.5 1.8E-14 6.3E-19 155.2 11.3 159 14-175 543-713 (876)
88 2z81_A CD282 antigen, TOLL-lik 99.5 3.3E-14 1.1E-18 146.5 12.8 133 19-154 26-162 (549)
89 3g39_A Variable lymphocyte rec 99.5 5.7E-14 1.9E-18 122.2 11.8 107 20-129 10-118 (170)
90 3cvr_A Invasion plasmid antige 99.5 3.8E-14 1.3E-18 146.1 12.5 149 19-189 80-237 (571)
91 1w8a_A SLIT protein; signaling 99.5 5.3E-14 1.8E-18 124.8 11.3 109 19-128 29-141 (192)
92 2o6r_A Variable lymphocyte rec 99.5 1E-13 3.4E-18 121.2 12.7 110 18-128 27-139 (177)
93 3rgz_A Protein brassinosteroid 99.5 2.8E-14 9.7E-19 153.1 10.8 90 12-101 459-551 (768)
94 2r9u_A Variable lymphocyte rec 99.5 1E-13 3.4E-18 121.1 12.4 107 21-130 14-122 (174)
95 1o6v_A Internalin A; bacterial 99.5 8.2E-14 2.8E-18 140.8 12.5 149 14-173 172-323 (466)
96 4b8c_D Glucose-repressible alc 99.5 8.8E-15 3E-19 155.7 5.5 114 35-155 217-331 (727)
97 2z7x_B TOLL-like receptor 1, v 99.5 4E-14 1.4E-18 144.9 10.2 146 20-173 303-458 (520)
98 4eco_A Uncharacterized protein 99.5 4.7E-14 1.6E-18 148.2 10.5 135 15-154 372-527 (636)
99 2z63_A TOLL-like receptor 4, v 99.5 4.8E-14 1.6E-18 145.8 10.4 154 13-169 46-210 (570)
100 4ecn_A Leucine-rich repeat pro 99.5 1.6E-14 5.3E-19 155.8 6.9 158 11-173 440-633 (876)
101 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.4E-13 4.8E-18 142.4 13.8 146 18-171 30-181 (562)
102 3bz5_A Internalin-J, INLJ; leu 99.5 6.8E-14 2.3E-18 141.1 11.0 122 14-150 37-158 (457)
103 4eco_A Uncharacterized protein 99.5 1.9E-14 6.3E-19 151.3 6.9 152 16-173 302-471 (636)
104 1o6v_A Internalin A; bacterial 99.5 1.2E-13 4.2E-18 139.5 12.5 151 13-174 193-346 (466)
105 3bz5_A Internalin-J, INLJ; leu 99.5 1.5E-13 5.1E-18 138.6 13.1 148 13-173 58-226 (457)
106 3cvr_A Invasion plasmid antige 99.5 1.4E-13 4.9E-18 141.8 12.8 142 17-172 98-243 (571)
107 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 9.5E-14 3.3E-18 143.7 11.2 145 20-172 332-486 (562)
108 2z7x_B TOLL-like receptor 1, v 99.5 1.2E-13 4.2E-18 141.3 11.9 105 19-126 21-128 (520)
109 1ds9_A Outer arm dynein; leuci 99.5 1.7E-16 5.9E-21 141.7 -9.1 130 20-155 24-155 (198)
110 3rgz_A Protein brassinosteroid 99.5 2E-13 7E-18 146.4 12.2 178 12-191 435-689 (768)
111 3j0a_A TOLL-like receptor 5; m 99.5 3.2E-13 1.1E-17 146.4 13.7 154 17-172 22-187 (844)
112 3j0a_A TOLL-like receptor 5; m 99.5 3.4E-13 1.2E-17 146.2 13.9 90 14-103 285-377 (844)
113 4b8c_D Glucose-repressible alc 99.4 2.3E-14 7.8E-19 152.5 4.0 116 12-130 217-333 (727)
114 2ell_A Acidic leucine-rich nuc 99.4 8.7E-14 3E-18 120.5 6.9 118 12-130 42-164 (168)
115 3g39_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 116.8 10.2 105 43-153 10-115 (170)
116 2r9u_A Variable lymphocyte rec 99.4 5.6E-13 1.9E-17 116.3 10.2 104 44-153 14-118 (174)
117 1jl5_A Outer protein YOPM; leu 99.4 7.6E-13 2.6E-17 133.3 12.4 140 19-173 131-271 (454)
118 3g06_A SSPH2 (leucine-rich rep 99.4 2E-12 6.9E-17 134.7 15.6 57 19-80 61-117 (622)
119 1dce_A Protein (RAB geranylger 99.4 8.3E-14 2.8E-18 144.0 3.1 133 15-155 405-548 (567)
120 1jl5_A Outer protein YOPM; leu 99.4 2E-12 6.7E-17 130.2 13.0 138 19-173 111-251 (454)
121 1a9n_A U2A', U2A'; complex (nu 99.4 3.8E-13 1.3E-17 117.5 6.7 113 38-155 15-128 (176)
122 3g06_A SSPH2 (leucine-rich rep 99.4 1.5E-12 5.1E-17 135.7 12.2 133 20-172 41-174 (622)
123 2je0_A Acidic leucine-rich nuc 99.4 5E-13 1.7E-17 113.2 5.6 110 40-155 15-128 (149)
124 1ds9_A Outer arm dynein; leuci 99.4 1.4E-14 4.8E-19 129.2 -4.3 135 14-153 43-185 (198)
125 2ca6_A RAN GTPase-activating p 99.3 1.1E-13 3.8E-18 136.3 1.0 161 13-173 54-258 (386)
126 4ay9_X Follicle-stimulating ho 99.3 1.3E-12 4.5E-17 126.9 8.4 137 18-158 29-172 (350)
127 2ifg_A High affinity nerve gro 99.3 8.2E-12 2.8E-16 121.0 12.1 106 22-130 11-120 (347)
128 4ay9_X Follicle-stimulating ho 99.3 2.7E-12 9.2E-17 124.7 8.6 151 21-177 11-172 (350)
129 2ca6_A RAN GTPase-activating p 99.3 6.4E-13 2.2E-17 130.8 2.3 163 8-172 21-229 (386)
130 3goz_A Leucine-rich repeat-con 99.3 1.6E-12 5.6E-17 126.9 4.6 156 18-173 21-210 (362)
131 2ast_B S-phase kinase-associat 99.3 6E-13 2.1E-17 128.2 1.5 169 19-191 70-256 (336)
132 3goz_A Leucine-rich repeat-con 99.3 7.1E-13 2.4E-17 129.4 1.8 162 13-174 44-240 (362)
133 2ast_B S-phase kinase-associat 99.3 2.6E-12 8.9E-17 123.7 4.9 143 20-169 48-205 (336)
134 2ifg_A High affinity nerve gro 99.2 1.7E-11 5.8E-16 118.7 8.4 105 45-154 11-117 (347)
135 3sb4_A Hypothetical leucine ri 99.2 1.7E-11 5.7E-16 118.0 7.9 70 18-88 48-148 (329)
136 3sb4_A Hypothetical leucine ri 99.2 2.6E-11 8.9E-16 116.7 7.8 129 18-153 100-310 (329)
137 1z7x_W Ribonuclease inhibitor; 99.1 1.7E-11 5.8E-16 123.2 1.5 173 17-190 197-406 (461)
138 1z7x_W Ribonuclease inhibitor; 99.0 2.3E-11 8E-16 122.2 0.6 159 14-174 165-356 (461)
139 3un9_A NLR family member X1; l 99.0 2.9E-11 1E-15 118.3 -0.1 154 19-172 72-252 (372)
140 3un9_A NLR family member X1; l 98.9 6.4E-11 2.2E-15 115.9 -1.2 139 17-155 99-254 (372)
141 3rw6_A Nuclear RNA export fact 98.8 2E-09 6.9E-14 99.7 5.4 103 47-150 148-261 (267)
142 4fdw_A Leucine rich hypothetic 98.8 1.5E-08 5.3E-13 100.0 11.0 122 20-148 158-308 (401)
143 4fdw_A Leucine rich hypothetic 98.7 2.3E-08 7.8E-13 98.7 8.8 146 18-173 202-359 (401)
144 3ogk_B Coronatine-insensitive 98.6 5.9E-09 2E-13 108.0 0.8 156 16-173 339-527 (592)
145 1io0_A Tropomodulin; LRR prote 98.6 2E-08 7E-13 88.1 2.8 119 35-154 29-165 (185)
146 2ra8_A Uncharacterized protein 98.6 7E-08 2.4E-12 93.7 6.6 156 16-172 136-320 (362)
147 3ogk_B Coronatine-insensitive 98.5 8.4E-08 2.9E-12 99.3 6.3 145 17-167 162-350 (592)
148 1io0_A Tropomodulin; LRR prote 98.5 2E-08 6.9E-13 88.1 0.6 113 14-127 31-165 (185)
149 2ra8_A Uncharacterized protein 98.4 9.7E-08 3.3E-12 92.7 2.3 153 16-170 169-341 (362)
150 2p1m_B Transport inhibitor res 98.3 5E-08 1.7E-12 100.9 -0.3 152 17-172 336-519 (594)
151 3e4g_A ATP synthase subunit S, 98.3 1.9E-07 6.5E-12 80.5 2.8 103 41-144 60-171 (176)
152 3rw6_A Nuclear RNA export fact 98.3 3.7E-07 1.3E-11 84.4 3.3 100 18-119 140-257 (267)
153 2p1m_B Transport inhibitor res 98.2 2.1E-07 7.2E-12 96.2 -0.0 133 17-153 370-519 (594)
154 4h09_A Hypothetical leucine ri 98.1 1.2E-05 4.2E-10 78.3 11.0 128 15-150 213-343 (379)
155 4gt6_A Cell surface protein; l 98.1 9.3E-06 3.2E-10 79.7 10.0 125 20-153 243-370 (394)
156 4h09_A Hypothetical leucine ri 98.0 1.2E-05 4.3E-10 78.2 9.6 113 14-131 235-350 (379)
157 4fs7_A Uncharacterized protein 98.0 2.4E-05 8.3E-10 76.7 10.7 85 59-150 292-376 (394)
158 4gt6_A Cell surface protein; l 97.9 7E-05 2.4E-09 73.4 12.3 82 60-148 261-342 (394)
159 4fs7_A Uncharacterized protein 97.8 6.6E-05 2.2E-09 73.5 10.0 100 37-145 292-393 (394)
160 3e4g_A ATP synthase subunit S, 97.8 1.7E-05 5.7E-10 68.3 4.3 85 18-102 60-154 (176)
161 3rfe_A Platelet glycoprotein I 97.5 0.00015 5.1E-09 59.3 6.3 55 68-126 12-68 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 5.5E-05 1.9E-09 66.3 2.1 118 36-153 35-170 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.00027 9.4E-09 57.7 5.7 55 45-101 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00013 4.4E-09 63.9 1.8 110 16-126 38-170 (197)
165 1iuq_A Glycerol-3-phosphate ac 96.3 0.00066 2.3E-08 64.2 0.3 94 172-275 127-234 (367)
166 2lz0_A Uncharacterized protein 82.4 1.7 5.9E-05 33.0 4.7 48 74-123 6-53 (100)
167 2lz0_A Uncharacterized protein 78.8 5.8 0.0002 30.0 6.6 48 51-99 5-54 (100)
No 1
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.89 E-value=4e-23 Score=181.45 Aligned_cols=155 Identities=69% Similarity=1.116 Sum_probs=143.4
Q ss_pred CccccHHHHhcccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCcccccc
Q psy18204 1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80 (435)
Q Consensus 1 ~~~lt~~~i~~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~ 80 (435)
||++|.+++...+++.++.+|+.|++++|.++.++......++|+.|++++|.|++++.++.+++|++|++++|+|+.++
T Consensus 1 m~~lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp -CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC
T ss_pred CccccHHHHHHHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC
Confidence 89999999999999999999999999999999998766555699999999999999988999999999999999999998
Q ss_pred chhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155 (435)
Q Consensus 81 ~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l 155 (435)
+.+++.+++|++|+|++|+|+.++.+..+..+++|+.|++++|+++.++.++..++..+++|+.||++.|.+...
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 888889999999999999999888655788999999999999999999988777889999999999999998764
No 2
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=2.1e-18 Score=149.83 Aligned_cols=140 Identities=32% Similarity=0.419 Sum_probs=126.3
Q ss_pred cCCCCcceEEEecCCCcc--cccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204 15 YTNPVKDRELDLRGYKIP--VIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET 92 (435)
Q Consensus 15 ~~~~~~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~ 92 (435)
...+++|+.|++++|.++ .+|..+..+++|+.|++++|.|+.++.+..+++|+.|++++|+++...+..+..+++|++
T Consensus 20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 345689999999999998 899888889999999999999999988999999999999999999855666678999999
Q ss_pred eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204 93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA 154 (435)
Q Consensus 93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~ 154 (435)
|+|++|.|+.++.+..+..+++|+.|++++|+++.++.++...+..+++|+.|++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999999998754588999999999999999999988766678999999999999998763
No 3
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=5.7e-18 Score=160.69 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=115.3
Q ss_pred CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204 19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG 97 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (435)
++++.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++....+++|+.|++++|+|+.+|..+ ..+++|++|+|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCT-TTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhh-ccCCCCCEEECCC
Confidence 57788888888887654 556778888888888888887776677788888888888888776644 6788888888888
Q ss_pred CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEEecCCCc
Q psy18204 98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIILSGDSID 172 (435)
Q Consensus 98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~lsgn~i~ 172 (435)
|+|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|+++.+... .....+.+++|.+.
T Consensus 110 N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 110 NRLTSLPL-GALRGLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp SCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCcccCH-HHHcCCCCCCEEECCCCCCCccChh---hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 88887764 3677788888888888888877654 346678888888888887765432 23377888888776
Q ss_pred ccccceee
Q psy18204 173 AGDQALFI 180 (435)
Q Consensus 173 ~~~~~~~i 180 (435)
..+..++.
T Consensus 186 ~ip~~~~~ 193 (290)
T 1p9a_G 186 TIPKGFFG 193 (290)
T ss_dssp CCCTTTTT
T ss_pred ccChhhcc
Confidence 55444433
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.4e-17 Score=156.12 Aligned_cols=175 Identities=21% Similarity=0.253 Sum_probs=138.4
Q ss_pred CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
.+++.|++++|.++.++. .+..+++|+.|+|++|.|+.++ .|..+++|++|++++|+++.+++..+..+++|++|+|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 578999999999998874 6788999999999999999886 3688999999999999999998888889999999999
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEEecCC
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIILSGDS 170 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~lsgn~ 170 (435)
++|+++.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.++.+... .....+++++|.
T Consensus 117 ~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 117 DRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLPKG---VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCeeCH-HHhCcCcCCCEEECCCCcCCccCHh---HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 9999988875 4678899999999999999988764 357889999999999988765432 344789999988
Q ss_pred CcccccceeecCCccccccchhchhhhhc
Q psy18204 171 IDAGDQALFIMNHRTRLDWNFLWGCMFHA 199 (435)
Q Consensus 171 i~~~~~~~~i~nh~~~lD~l~l~~~~~~~ 199 (435)
+....... ......+..+.+.++++..
T Consensus 193 l~~~~~~~--~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 193 LKRVPEGA--FDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CSCCCTTT--TTTCTTCCEEECCSSCBCC
T ss_pred CCcCCHHH--hccccCCCEEEecCCCeeC
Confidence 77544322 2233444445555555433
No 5
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=5.7e-18 Score=144.08 Aligned_cols=134 Identities=31% Similarity=0.445 Sum_probs=119.2
Q ss_pred CCCCcceEEEecCCCcc--cccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204 16 TNPVKDRELDLRGYKIP--VIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL 93 (435)
Q Consensus 16 ~~~~~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L 93 (435)
..+++++.|++++|.++ .+|..+..+++|+.|++++|.++.++.++.+++|+.|++++|.|+...+..++.+++|++|
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34578999999999998 8998888999999999999999999889999999999999999998445565789999999
Q ss_pred ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecc
Q psy18204 94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSK 149 (435)
Q Consensus 94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~ 149 (435)
++++|++++++....+..+++|+.|++++|+++.++.++...+..+++|+.||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999875334788999999999999999999886666789999999999874
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=1.9e-17 Score=153.65 Aligned_cols=150 Identities=23% Similarity=0.324 Sum_probs=98.2
Q ss_pred CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
++++.|+|++|.++.++ ..+..+++|+.|+|++|.|+.++ .|..+++|+.|++++|+|+.+++..+..+++|++|+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 45677777777776554 34666777777777777777664 3667777777777777777776666667777777777
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccEEEEecCC
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTEIILSGDS 170 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~l~lsgn~ 170 (435)
++|+|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|+++.+.. ......+.+++|.
T Consensus 115 ~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 115 GGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 7777776664 2456677777777777777766553 24566777777777777654432 1223555555555
Q ss_pred Cc
Q psy18204 171 ID 172 (435)
Q Consensus 171 i~ 172 (435)
+.
T Consensus 191 ~~ 192 (251)
T 3m19_A 191 FD 192 (251)
T ss_dssp BC
T ss_pred ee
Confidence 43
No 7
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=2.3e-17 Score=154.98 Aligned_cols=152 Identities=22% Similarity=0.315 Sum_probs=84.8
Q ss_pred CCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204 17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT 96 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls 96 (435)
++.+|+.|++++|.+..++.. ..+++|+.|++++|.+++++.+..+++|++|++++|.++.+++..++.+++|++|+|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGI-QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTG-GGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cccceeeeeeCCCCccccccc-ccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 345566666666666555432 3455666666666666655555556666666666666666555555556666666666
Q ss_pred CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccEEEEecCCC
Q psy18204 97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTEIILSGDSI 171 (435)
Q Consensus 97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~l~lsgn~i 171 (435)
+|+++.++. ..+..+++|+.|++++|.++.++.. .+..+++|+.|++++|+++.+.. ......+.+++|.+
T Consensus 118 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 118 ENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp TSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCCccCH-HHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 666655543 2355566666666666666555442 23455666666666665544322 12235556666555
Q ss_pred cc
Q psy18204 172 DA 173 (435)
Q Consensus 172 ~~ 173 (435)
..
T Consensus 194 ~~ 195 (272)
T 3rfs_A 194 KS 195 (272)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=3.3e-17 Score=153.61 Aligned_cols=150 Identities=23% Similarity=0.294 Sum_probs=110.2
Q ss_pred cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204 20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG 97 (435)
Q Consensus 20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (435)
+.+.++++++.++.+|..+ .++++.|+|++|.|+.++ .|..+++|++|++++|.|+.+++..|..+++|++|+|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4677888888888777544 257888888888887775 477788888888888888888777777788888888888
Q ss_pred CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEEecCCCc
Q psy18204 98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIILSGDSID 172 (435)
Q Consensus 98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~lsgn~i~ 172 (435)
|+++.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.++.+... .....+.+++|.+.
T Consensus 95 n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 95 NKLQALPI-GVFDQLVNLAELRLDRNQLKSLPPR---VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp SCCCCCCT-TTTTTCSSCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCcCCH-hHcccccCCCEEECCCCccCeeCHH---HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 88877765 3667788888888888888776653 346778888888888877654332 33477788777766
Q ss_pred ccc
Q psy18204 173 AGD 175 (435)
Q Consensus 173 ~~~ 175 (435)
...
T Consensus 171 ~~~ 173 (270)
T 2o6q_A 171 RVP 173 (270)
T ss_dssp CCC
T ss_pred EeC
Confidence 443
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=2.6e-17 Score=149.63 Aligned_cols=131 Identities=25% Similarity=0.334 Sum_probs=81.8
Q ss_pred CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
++++.|+|++|.|+.++. .+..+++|+.|+|++|.|+.+. .|..+++|+.|+|++|+|+.+++..|..+++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 356666666666665553 4555666666666666666652 4666666666666666666666666666666666666
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
++|+|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.+.
T Consensus 112 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCCcC
Confidence 6666666553 3566666666666666666665543 2345666666666666554
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=4e-17 Score=151.38 Aligned_cols=137 Identities=20% Similarity=0.323 Sum_probs=123.8
Q ss_pred ccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL 90 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L 90 (435)
.+.++++|++|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..+..+++|
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 5778999999999999999776 55788999999999999999986 57899999999999999999999888999999
Q ss_pred CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204 91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA 154 (435)
Q Consensus 91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~ 154 (435)
++|+|++|+|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|++..
T Consensus 134 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 134 KELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHG---AFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCBCT
T ss_pred cEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCceeC
Confidence 999999999999886 4788999999999999999988764 45789999999999998754
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=2e-17 Score=155.41 Aligned_cols=157 Identities=24% Similarity=0.243 Sum_probs=134.9
Q ss_pred cccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204 11 QCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLP 88 (435)
Q Consensus 11 ~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~ 88 (435)
....+.++++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|+++.+++..++.++
T Consensus 55 ~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 55 SVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133 (272)
T ss_dssp CCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence 3445778899999999999999876 4567999999999999999987 389999999999999999999988889999
Q ss_pred CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccE
Q psy18204 89 NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTE 163 (435)
Q Consensus 89 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~ 163 (435)
+|++|+|++|+++.++. ..+..+++|+.|++++|.++.++.. .+..+++|+.|++++|+++.+... .....
T Consensus 134 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEG---VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209 (272)
T ss_dssp TCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHH---HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence 99999999999998876 3678999999999999999988764 357899999999999998865432 23477
Q ss_pred EEEecCCCc
Q psy18204 164 IILSGDSID 172 (435)
Q Consensus 164 l~lsgn~i~ 172 (435)
+.+++|.+.
T Consensus 210 L~l~~N~~~ 218 (272)
T 3rfs_A 210 IWLHDNPWD 218 (272)
T ss_dssp EECCSSCBC
T ss_pred EEccCCCcc
Confidence 888887665
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=4.4e-17 Score=149.07 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=60.5
Q ss_pred eEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCc
Q psy18204 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN 99 (435)
Q Consensus 22 ~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (435)
+.++.+++.++.+|..+ .++|+.|+|++|.|+.+. .|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 44455555555444322 244555555555554442 24445555555555555555544444455555555555555
Q ss_pred CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204 100 IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA 154 (435)
Q Consensus 100 i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~ 154 (435)
|+.++. ..+..+++|+.|+|++|.++.+|.. +..+++|+.|++++|+++.
T Consensus 100 l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~~----~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 100 LTVLPS-AVFDRLVHLKELFMCCNKLTELPRG----IERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCCCSCCTT----GGGCTTCSEEECCSSCCCC
T ss_pred CCccCh-hHhCcchhhCeEeccCCcccccCcc----cccCCCCCEEECCCCcCCc
Confidence 544443 2344455555555555555544432 2444555555555554443
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=3.4e-17 Score=155.31 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=93.8
Q ss_pred ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE 91 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~ 91 (435)
.+.++++++++++++|.++.+|..+ .++++.|+|++|.|+.++ .|..+++|+.|++++|.|+.++.. +.+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred cccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 3455666666777766666666443 246666777777666653 466666677777777776666443 4666677
Q ss_pred eeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEE
Q psy18204 92 TLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIIL 166 (435)
Q Consensus 92 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~l 166 (435)
+|+|++|+|+.++. .+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|+++.+... .....+.+
T Consensus 81 ~L~Ls~N~l~~l~~--~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 81 TLDLSHNQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp EEECCSSCCSSCCC--CTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCcCch--hhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 77777776666654 556666677777777766666543 345666677777776666554322 22356666
Q ss_pred ecCCCccc
Q psy18204 167 SGDSIDAG 174 (435)
Q Consensus 167 sgn~i~~~ 174 (435)
++|.+...
T Consensus 156 ~~N~l~~l 163 (290)
T 1p9a_G 156 ANNNLTEL 163 (290)
T ss_dssp TTSCCSCC
T ss_pred CCCcCCcc
Confidence 66666533
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=5.4e-17 Score=153.27 Aligned_cols=151 Identities=20% Similarity=0.241 Sum_probs=83.6
Q ss_pred CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCc-cccccchhhcCCCCCCee
Q psy18204 18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNR-IVRIAENLQENLPNLETL 93 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~-i~~i~~~~~~~l~~L~~L 93 (435)
+++++.|++++|.++.++ ..+..+++|+.|++++|.++.+. .|..+++|++|++++|. ++.+++..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 345666666666666554 34555666666666666665552 45556666666666665 555544444556666666
Q ss_pred ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccEEEEec
Q psy18204 94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTEIILSG 168 (435)
Q Consensus 94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~l~lsg 168 (435)
++++|.++.++. ..+..+++|+.|++++|.++.++.. .+..+++|+.|++++|+++.+.. ......+.+++
T Consensus 111 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 111 HLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp ECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 666666655543 2455566666666666666555432 23455566666666665544322 12235555555
Q ss_pred CCCc
Q psy18204 169 DSID 172 (435)
Q Consensus 169 n~i~ 172 (435)
|.+.
T Consensus 187 n~l~ 190 (285)
T 1ozn_A 187 NRVA 190 (285)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 5554
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=145.14 Aligned_cols=130 Identities=25% Similarity=0.374 Sum_probs=85.0
Q ss_pred cceEEEecCCCccccc--ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 20 KDRELDLRGYKIPVIE--NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 20 ~L~~L~L~~n~i~~i~--~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
.+++|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++..|..+++|++|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 4566777777776553 33556667777777777776664 4666777777777777777766666666777777777
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
++|+|+.+.+ ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.+.
T Consensus 113 s~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 113 RSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTTCCEEECCSCCEE
T ss_pred CCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHH---HhcCCCCCCEEEecCcCCc
Confidence 7777766643 3566667777777777777665332 3456667777777766654
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=1.2e-16 Score=150.87 Aligned_cols=158 Identities=22% Similarity=0.246 Sum_probs=133.8
Q ss_pred ccCCCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCC-CCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNND-IRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPN 89 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~ 89 (435)
.|.++++|+.|++++|.++.+ +..+..+++|+.|++++|. ++.++ .+..+++|++|++++|.++.+++..+..+++
T Consensus 51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence 578889999999999999977 5678889999999999997 88874 6889999999999999999988777789999
Q ss_pred CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----hhhcccEE
Q psy18204 90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTEI 164 (435)
Q Consensus 90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~l 164 (435)
|++|++++|+++.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.++.+. .......+
T Consensus 131 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 131 LQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPER---AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp CCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEECCCCcccccCH-hHhccCCCccEEECCCCcccccCHH---HhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 9999999999998875 3688899999999999999987764 3577899999999999887652 22345889
Q ss_pred EEecCCCcccc
Q psy18204 165 ILSGDSIDAGD 175 (435)
Q Consensus 165 ~lsgn~i~~~~ 175 (435)
++++|.+....
T Consensus 207 ~l~~n~l~~~~ 217 (285)
T 1ozn_A 207 YLFANNLSALP 217 (285)
T ss_dssp ECCSSCCSCCC
T ss_pred eCCCCcCCcCC
Confidence 99999887544
No 17
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.5e-16 Score=149.49 Aligned_cols=166 Identities=22% Similarity=0.304 Sum_probs=134.3
Q ss_pred CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
++++.|++++|.++.++. .+..+++|+.|++++|.++.++ .|..+++|++|++++|+++.+++..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 479999999999998874 6788999999999999999886 5899999999999999999998877799999999999
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHHHHhh-----hhccc----EE
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGT----EI 164 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~----~l 164 (435)
++|+++.++.. .+..+++|+.|++++|.++. +|. .+..+++|+.|++++|+++.+.. ..... .+
T Consensus 108 ~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 108 VETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp TTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred CCCCccccCch-hcccCCCCCEEECcCCccceecCch----hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 99999988763 68899999999999999987 344 36789999999999998865422 22222 78
Q ss_pred EEecCCCcccccceeecCCcccccc
Q psy18204 165 ILSGDSIDAGDQALFIMNHRTRLDW 189 (435)
Q Consensus 165 ~lsgn~i~~~~~~~~i~nh~~~lD~ 189 (435)
++++|.+.......+...++..+|.
T Consensus 183 ~ls~n~l~~~~~~~~~~~~L~~L~L 207 (276)
T 2z62_A 183 DLSLNPMNFIQPGAFKEIRLKELAL 207 (276)
T ss_dssp ECCSSCCCEECTTSSCSCCEEEEEC
T ss_pred ecCCCcccccCccccCCCcccEEEC
Confidence 8888888755444433334444443
No 18
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.4e-16 Score=149.67 Aligned_cols=162 Identities=21% Similarity=0.212 Sum_probs=128.4
Q ss_pred ccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL 90 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L 90 (435)
.+.++++|+.|++++|.++.++ ..+..+++|+.|+|++|.++.++ .|..+++|+.|++++|.++.+++..++.+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 5778889999999999998776 46778899999999999998875 58889999999999999998877666889999
Q ss_pred CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccc-eeeecchhHHHHhhhh----cccEEE
Q psy18204 91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVK-LLDFSKVKLKALMNVM----FGTEII 165 (435)
Q Consensus 91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~-~Ldl~~n~l~~l~~~~----~~~~l~ 165 (435)
++|++++|.++.+.....+..+++|+.|+|++|.++.++...+..+..++.|. .|++++|.++.+.... ....++
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~ 206 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence 99999999998744223788899999999999999887665443444555554 7899999887654333 347788
Q ss_pred EecCCCcccc
Q psy18204 166 LSGDSIDAGD 175 (435)
Q Consensus 166 lsgn~i~~~~ 175 (435)
+++|.+....
T Consensus 207 L~~n~l~~~~ 216 (276)
T 2z62_A 207 LDTNQLKSVP 216 (276)
T ss_dssp CCSSCCSCCC
T ss_pred CCCCceeecC
Confidence 8888876443
No 19
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=2.3e-16 Score=141.84 Aligned_cols=132 Identities=22% Similarity=0.335 Sum_probs=99.8
Q ss_pred CCcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 18 PVKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+++++.|++++|.++.++. .+..+++|+.|++++|.++.++ .|..+++|++|++++|+|+.+++..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4577888888888876663 4567788888888888888775 367788888888888888887777667888888888
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
|++|+|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.+.
T Consensus 107 L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 107 LNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCBC
T ss_pred cCCCcCcccCH-hHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecCCCee
Confidence 88888877765 3567788888888888888776653 3466788888888887554
No 20
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=1.2e-16 Score=152.84 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=76.4
Q ss_pred cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++.+..+++|+.|++++|+++.++. +..+++|++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 135 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEE
Confidence 4445555555555555555544 44455555555555555555555555555555555555555533 24555555555
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCCC
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDSI 171 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~i 171 (435)
+++|.++.++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.+.. ......+.+++|.+
T Consensus 136 l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 136 LDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred CCCCccCcCcc---ccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCcc
Confidence 55555554432 4455555555555555555443 2455555555555555543322 22234555555555
Q ss_pred c
Q psy18204 172 D 172 (435)
Q Consensus 172 ~ 172 (435)
.
T Consensus 208 ~ 208 (308)
T 1h6u_A 208 S 208 (308)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=6.3e-17 Score=158.30 Aligned_cols=153 Identities=24% Similarity=0.330 Sum_probs=117.2
Q ss_pred CcceEEEecCCCccccc-cccc-CCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 19 VKDRELDLRGYKIPVIE-NMGA-TLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~-~~~~-~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
..++.|+|++|.|+.++ ..+. .+++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..|..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 45788999999988776 3454 7889999999999998886 588889999999999999988887778899999999
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhhhc-------ccEEEEe
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMF-------GTEIILS 167 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~~-------~~~l~ls 167 (435)
|++|+|+.+.. ..+..+++|+.|+|++|.++.++...+..+..+++|+.||+++|+++.+....+ ...+.+.
T Consensus 119 L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 119 LYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred CCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 99999988764 478888999999999999988876532222568889999999998865432111 2457777
Q ss_pred cCCCc
Q psy18204 168 GDSID 172 (435)
Q Consensus 168 gn~i~ 172 (435)
+|.+.
T Consensus 198 ~N~~~ 202 (361)
T 2xot_A 198 NNPLE 202 (361)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 77665
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=1.8e-16 Score=144.97 Aligned_cols=131 Identities=19% Similarity=0.260 Sum_probs=119.4
Q ss_pred CCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 18 PVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+++|+.|+|++|.|+.+ +..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..|..+++|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 47899999999999977 567888999999999999999987 478999999999999999999998889999999999
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
|++|+|+.++. .+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.+.
T Consensus 119 Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPHG---AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCBC
T ss_pred ccCCcccccCc--ccccCCCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCCcc
Confidence 99999999886 778999999999999999988763 4578999999999999875
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.68 E-value=1.2e-16 Score=166.95 Aligned_cols=134 Identities=23% Similarity=0.329 Sum_probs=120.2
Q ss_pred CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
+++++|+|++|+|+.++ ..+..+++|++|+|++|.|+.++ .|.++++|++|+|++|+|+.+++..|+++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999987 56889999999999999999996 5999999999999999999999998999999999999
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l 155 (435)
++|+|+.+++ ..++++++|+.|+|++|.++.++... .+..+++|+.|++++|+++.+
T Consensus 132 s~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 132 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCEE
T ss_pred CCCcCCCCCh-hhhhcCcccCeeccccCccccCCCch--hhccchhhhhhcccCcccccc
Confidence 9999999886 37899999999999999998653211 357899999999999988654
No 24
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=1.8e-16 Score=144.15 Aligned_cols=146 Identities=24% Similarity=0.277 Sum_probs=125.5
Q ss_pred ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204 21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98 (435)
Q Consensus 21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (435)
-+.++++++.++.+|..+. ++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+.+..|.++++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4789999999999997553 68999999999999986 6899999999999999999998887899999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEEecCCCc
Q psy18204 99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIILSGDSID 172 (435)
Q Consensus 99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~lsgn~i~ 172 (435)
+|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.++.+... .....+.+++|.+.
T Consensus 91 ~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPK-SLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCH-hHccCCCCCCEEECCCCCCCEeCHH---HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9999886 4678999999999999999988654 467899999999999999865432 22367777777654
No 25
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=2.6e-16 Score=149.31 Aligned_cols=146 Identities=19% Similarity=0.304 Sum_probs=87.6
Q ss_pred CCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204 17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT 96 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls 96 (435)
++++|+.|++++|.+..++. +..+++|+.|++++|.+++++.+..+++|+.|++++|.++.++. +..+++|++|+|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECC
Confidence 34556666666666666654 34466666666666666666556666666666666666666533 3566666666666
Q ss_pred CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCCCcc
Q psy18204 97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDSIDA 173 (435)
Q Consensus 97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~i~~ 173 (435)
+|+++.++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|+++.+.. ......+++++|.+..
T Consensus 121 ~n~i~~~~---~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 121 HNGISDIN---GLVHLPQLESLYLGNNKITDITV-----LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred CCcCCCCh---hhcCCCCCCEEEccCCcCCcchh-----hccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC
Confidence 66666543 44556666666666666665532 3556666666666666554322 2223566666666554
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=158.33 Aligned_cols=155 Identities=22% Similarity=0.293 Sum_probs=118.7
Q ss_pred cccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204 13 MQYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPN 89 (435)
Q Consensus 13 ~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~ 89 (435)
..|.++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.++...|..+++
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 46788889999999999998776 66778899999999999998886 4888899999999999999888877788888
Q ss_pred CCeeecCC-CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----hhhcccE
Q psy18204 90 LETLILTG-NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTE 163 (435)
Q Consensus 90 L~~L~Ls~-N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~ 163 (435)
|+.|+|++ |.++.++. ..+.++++|+.|+|++|.++.+|. +..+++|+.|++++|.++.+. .......
T Consensus 162 L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp CCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccccc-----cCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence 88888887 45566654 367778888888888888877765 356777777777777765542 2223366
Q ss_pred EEEecCCCcc
Q psy18204 164 IILSGDSIDA 173 (435)
Q Consensus 164 l~lsgn~i~~ 173 (435)
+.+++|.+..
T Consensus 236 L~L~~n~l~~ 245 (440)
T 3zyj_A 236 LWMIQSQIQV 245 (440)
T ss_dssp EECTTCCCCE
T ss_pred EECCCCceeE
Confidence 7777766653
No 27
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=8.6e-17 Score=143.52 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=112.4
Q ss_pred CCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204 17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT 96 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls 96 (435)
++++|+.|++++|.++.++ .+..+++|+.|++++|.++.++.+..+++|++|++++|+++......++.+++|++|+++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4567888999998888888 456688899999999888888788888889999999998886434444788889999999
Q ss_pred CCcCCCCCCCCCCCCCCCCCEEEeecCC-ccccccchHHHHhcCCccceeeecchhHHHHh---hhhcccEEEEecCCCc
Q psy18204 97 GNNIQELGDLDPLSTLPKLKTLCLLHNP-VINRPHYRLYVAFKLPQVKLLDFSKVKLKALM---NVMFGTEIILSGDSID 172 (435)
Q Consensus 97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~---~~~~~~~l~lsgn~i~ 172 (435)
+|+++.... ..+..+++|+.|++++|. ++.++. +..+++|+.|++++|.++.+. .......+++++|.+.
T Consensus 121 ~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred CCccCcHhH-HHHhhCCCCCEEEccCCCCccccHh-----hcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence 998876332 367788889999999887 777763 467888999999888876542 2233467777777653
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=3.7e-16 Score=157.45 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=117.1
Q ss_pred ccccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204 12 CMQYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLP 88 (435)
Q Consensus 12 ~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~ 88 (435)
+..|.++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.++...|..++
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 171 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence 346788899999999999998776 66778899999999999998886 488899999999999999988887777888
Q ss_pred CCCeeecCC-CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhccc
Q psy18204 89 NLETLILTG-NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGT 162 (435)
Q Consensus 89 ~L~~L~Ls~-N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~ 162 (435)
+|+.|+|++ |.++.++. ..+..+++|+.|+|++|.++.++. +..+++|+.|++++|.++.+.. .....
T Consensus 172 ~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 245 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDMPN-----LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245 (452)
T ss_dssp TCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSSCCC-----CTTCTTCCEEECTTSCCSEECGGGGTTCTTCC
T ss_pred cccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCccccccc-----ccccccccEEECcCCcCcccCcccccCccCCC
Confidence 888888887 45566654 356777777777777777777665 3566777777777777654422 22336
Q ss_pred EEEEecCCCcc
Q psy18204 163 EIILSGDSIDA 173 (435)
Q Consensus 163 ~l~lsgn~i~~ 173 (435)
.+.+++|.+..
T Consensus 246 ~L~L~~n~l~~ 256 (452)
T 3zyi_A 246 KLWVMNSQVSL 256 (452)
T ss_dssp EEECTTSCCCE
T ss_pred EEEeCCCcCce
Confidence 66666666553
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=156.96 Aligned_cols=152 Identities=25% Similarity=0.341 Sum_probs=112.3
Q ss_pred CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
.+++.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..+..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56788888888888665 56777888888888888887775 5777888888888888888887776778888888888
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeec-CCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCCC
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLH-NPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDSI 171 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~-N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~i 171 (435)
++|+|+.++. ..+..+++|+.|+|++ |.+..++.. .+..+++|+.|++++|.++.+.. ......+++++|.+
T Consensus 144 ~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 144 RNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred CCCcccccCH-HHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence 8888877765 3677788888888887 445555543 34677888888888887765532 23347778888776
Q ss_pred ccc
Q psy18204 172 DAG 174 (435)
Q Consensus 172 ~~~ 174 (435)
...
T Consensus 220 ~~~ 222 (440)
T 3zyj_A 220 SAI 222 (440)
T ss_dssp CEE
T ss_pred Ccc
Confidence 643
No 30
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.66 E-value=8.2e-17 Score=155.41 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=110.1
Q ss_pred CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204 18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT 96 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls 96 (435)
..+++.|+|++|.++.+|..+..+++|+.|+|++|.|+.++ .++.+++|++|++++|.++.+|..+ +.+++|++|+|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCCEEECC
Confidence 46788888888888888876667888888888888888776 5778888888888888888886665 778888888888
Q ss_pred CCcC-CCCCCCCCC---------CCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh----hhccc
Q psy18204 97 GNNI-QELGDLDPL---------STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN----VMFGT 162 (435)
Q Consensus 97 ~N~i-~~l~~~~~l---------~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~----~~~~~ 162 (435)
+|++ ..++. .+ ..+++|+.|+|++|.++.+|. .+..+++|+.|++++|.++.+.. .....
T Consensus 159 ~n~~~~~~p~--~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 159 ACPELTELPE--PLASTDASGEHQGLVNLQSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232 (328)
T ss_dssp EETTCCCCCS--CSEEEC-CCCEEESTTCCEEEEEEECCCCCCG----GGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred CCCCccccCh--hHhhccchhhhccCCCCCEEECcCCCcCcchH----hhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence 8654 44443 33 347888888888888887765 25678888888888887765432 23347
Q ss_pred EEEEecCCCcc
Q psy18204 163 EIILSGDSIDA 173 (435)
Q Consensus 163 ~l~lsgn~i~~ 173 (435)
.+++++|.+..
T Consensus 233 ~L~Ls~n~~~~ 243 (328)
T 4fcg_A 233 ELDLRGCTALR 243 (328)
T ss_dssp EEECTTCTTCC
T ss_pred EEECcCCcchh
Confidence 77888766543
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=4.6e-16 Score=156.74 Aligned_cols=153 Identities=24% Similarity=0.292 Sum_probs=125.7
Q ss_pred CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+++++.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..++.+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 357899999999998764 66788999999999999998885 688899999999999999999888778899999999
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeec-CCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCC
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLH-NPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDS 170 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~-N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~ 170 (435)
|++|+|+.++. ..+..+++|+.|++++ |.+..++.. .+..+++|+.|++++|.++.+.. ......+++++|.
T Consensus 154 L~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 154 LRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred CCCCCcceeCH-hHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence 99999988876 4788899999999998 556666653 35788999999999998876532 3344788899888
Q ss_pred Cccc
Q psy18204 171 IDAG 174 (435)
Q Consensus 171 i~~~ 174 (435)
+...
T Consensus 230 l~~~ 233 (452)
T 3zyi_A 230 FPEI 233 (452)
T ss_dssp CSEE
T ss_pred Cccc
Confidence 7644
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=6.3e-16 Score=137.88 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=113.2
Q ss_pred ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCC--cCCCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK--IDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE 91 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~ 91 (435)
.+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++. .+.++.+++|+.|++++|.++......++.+++|+
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 5677899999999999888776 45569999999999999987 45799999999999999999975555558999999
Q ss_pred eeecCCCc-CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 92 TLILTGNN-IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 92 ~L~Ls~N~-i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
+|++++|+ ++.++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|++.
T Consensus 140 ~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~~-----l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 140 SIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCTT-----GGGCSSCCEEEECBC---
T ss_pred EEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChHH-----hccCCCCCEEEeeCcccC
Confidence 99999998 88875 57889999999999999998764 578999999999999975
No 33
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=138.38 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=114.3
Q ss_pred ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCc
Q psy18204 21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN 99 (435)
Q Consensus 21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (435)
-+.+++++|.++.+|..+ .++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..|.++++|++|+|++|+
T Consensus 12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 468999999999999654 368999999999999987 78999999999999999999998888999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 100 IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 100 i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.+.
T Consensus 90 l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPP-RTFDGLKSLRLLSLHGNDISVVPEG---AFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECCSSCEE
T ss_pred cCEeCH-HHhCCCCCCCEEECCCCCCCeeChh---hhhcCccccEEEeCCCCee
Confidence 999886 4789999999999999999988874 3578999999999999875
No 34
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=6.1e-16 Score=147.95 Aligned_cols=148 Identities=22% Similarity=0.305 Sum_probs=129.8
Q ss_pred cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+.++++|+.|++++|.++.++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.+++ ++.+++|+.|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 157 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS 157 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred HccCCCCCEEEccCCcCCCchh-hcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEE
Confidence 7889999999999999998874 56799999999999999999889999999999999999999866 48999999999
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCCC
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDSI 171 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~i 171 (435)
|++|++++++. +..+++|+.|++++|.++.++. +..+++|+.|++++|+++.+.. ......+.+++|.+
T Consensus 158 l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 158 IGNAQVSDLTP---LANLSKLTTLKADDNKISDISP-----LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred ccCCcCCCChh---hcCCCCCCEEECCCCccCcChh-----hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 99999998763 7889999999999999998876 4789999999999999876543 23347888888877
Q ss_pred cc
Q psy18204 172 DA 173 (435)
Q Consensus 172 ~~ 173 (435)
..
T Consensus 230 ~~ 231 (308)
T 1h6u_A 230 TN 231 (308)
T ss_dssp EC
T ss_pred ec
Confidence 53
No 35
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=2.2e-16 Score=147.55 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=117.9
Q ss_pred ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL 93 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L 93 (435)
.+.++++|+.|++++|.|+.++ .+..+++|+.|+|++|.|++++.+..+++|+.|++++|+++.++... . ++|+.|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~--~-~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP--S-ACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCC--C-SSCCEE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccc--c-CcccEE
Confidence 4556778999999999998888 45568899999999999988877888999999999999999886533 3 889999
Q ss_pred ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh---hhhcccEEEEecCC
Q psy18204 94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM---NVMFGTEIILSGDS 170 (435)
Q Consensus 94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~---~~~~~~~l~lsgn~ 170 (435)
+|++|+|+.++ .+..+++|+.|+|++|.++.++. +..+++|+.|++++|+++.+. .......+++++|.
T Consensus 112 ~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~~-----l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 112 FLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVM-----LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCGG-----GGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred EccCCccCCCh---hhcCcccccEEECCCCcCCCChH-----HccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCc
Confidence 99999998864 57888999999999999988753 477899999999999887552 22233677777776
Q ss_pred Cc
Q psy18204 171 ID 172 (435)
Q Consensus 171 i~ 172 (435)
+.
T Consensus 184 ~~ 185 (263)
T 1xeu_A 184 CV 185 (263)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 36
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=142.31 Aligned_cols=146 Identities=21% Similarity=0.272 Sum_probs=124.1
Q ss_pred ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC---CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204 21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID---GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG 97 (435)
Q Consensus 21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (435)
-+.+++++|.++.+|..+ ...++.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..|..+++|++|+|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 468999999999999654 346799999999999884 378999999999999999999988889999999999999
Q ss_pred CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccEEEEecCCCc
Q psy18204 98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTEIILSGDSID 172 (435)
Q Consensus 98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~l~lsgn~i~ 172 (435)
|+|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.++.+.. ......+++++|.+.
T Consensus 91 N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQH-KMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTT---SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCH-hHhcCCcCCCEEECCCCcCCeECHh---HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99998875 4688999999999999999987553 35789999999999999986532 223367777777765
No 37
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=1.9e-16 Score=145.54 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=127.2
Q ss_pred CCcceEEEecCCCcccccc-cccCCCCCCEEEccCCC-CCCcC--CCCCCCCCCEEEccC-CccccccchhhcCCCCCCe
Q psy18204 18 PVKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNND-IRKID--GFPLLKRLSCLFFNN-NRIVRIAENLQENLPNLET 92 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~ls~-N~i~~i~~~~~~~l~~L~~ 92 (435)
+.+++.|++++|+|+.++. .+..+++|+.|++++|. ++.++ .|..+++|++|++++ |+|+.+++..|..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3489999999999998875 68889999999999997 99886 588999999999998 9999999888899999999
Q ss_pred eecCCCcCCCCCCCCCCCCCCCCC---EEEeecC-CccccccchHHHHhcCCccc-eeeecchhHHHHhhhh----cccE
Q psy18204 93 LILTGNNIQELGDLDPLSTLPKLK---TLCLLHN-PVINRPHYRLYVAFKLPQVK-LLDFSKVKLKALMNVM----FGTE 163 (435)
Q Consensus 93 L~Ls~N~i~~l~~~~~l~~l~~L~---~L~L~~N-~i~~~~~~~~~~~~~l~~L~-~Ldl~~n~l~~l~~~~----~~~~ 163 (435)
|++++|+++.++. +..+++|+ .|++++| .++.++.. .+..+++|+ .|++++|.++.+.... ....
T Consensus 110 L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 110 LGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDA 183 (239)
T ss_dssp EEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEE
T ss_pred EeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCCCcccCHhhcCCCCCCE
Confidence 9999999998775 56677777 9999999 89988764 357899999 9999999987654332 3367
Q ss_pred EEEecCC-Cccc
Q psy18204 164 IILSGDS-IDAG 174 (435)
Q Consensus 164 l~lsgn~-i~~~ 174 (435)
+.+++|. +...
T Consensus 184 L~L~~n~~l~~i 195 (239)
T 2xwt_C 184 VYLNKNKYLTVI 195 (239)
T ss_dssp EECTTCTTCCEE
T ss_pred EEcCCCCCcccC
Confidence 8888884 6543
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=2.8e-16 Score=149.84 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=91.2
Q ss_pred cCCCCcceEEEecCCCcccc---cccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccc-hhhcCCCC
Q psy18204 15 YTNPVKDRELDLRGYKIPVI---ENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAE-NLQENLPN 89 (435)
Q Consensus 15 ~~~~~~L~~L~L~~n~i~~i---~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~-~~~~~l~~ 89 (435)
|.++++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++ .+..+++|++|++++|+++.++. ..+..+++
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence 55677777777777776644 333344666777777777666654 45666666666666666666654 34466666
Q ss_pred CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHHHHh-----hhhccc
Q psy18204 90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGT 162 (435)
Q Consensus 90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~ 162 (435)
|++|++++|.++.... ..+..+++|+.|++++|.++. ++. .+..+++|+.|++++|.++.+. ......
T Consensus 128 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 128 LIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp CCEEECTTSCCEECST-TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCEEECCCCcCCccch-hhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 6666666666654443 245566666666666666653 333 2355666666666666655431 112235
Q ss_pred EEEEecCCCcc
Q psy18204 163 EIILSGDSIDA 173 (435)
Q Consensus 163 ~l~lsgn~i~~ 173 (435)
.+++++|.+..
T Consensus 203 ~L~L~~N~l~~ 213 (306)
T 2z66_A 203 VLNMSHNNFFS 213 (306)
T ss_dssp EEECTTSCCSB
T ss_pred EEECCCCccCc
Confidence 66666666543
No 39
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=4.7e-16 Score=147.54 Aligned_cols=149 Identities=26% Similarity=0.281 Sum_probs=130.2
Q ss_pred cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204 13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET 92 (435)
Q Consensus 13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~ 92 (435)
+.+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++.+..+++|+.|++++|+|+.+ +.+ ..+++|+.
T Consensus 62 ~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~-~~l-~~l~~L~~ 138 (291)
T 1h6t_A 62 QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGL-VHLPQLES 138 (291)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC-GGG-GGCTTCCE
T ss_pred hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC-hhh-cCCCCCCE
Confidence 457778999999999999998887 778999999999999999999999999999999999999998 344 78999999
Q ss_pred eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecC
Q psy18204 93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGD 169 (435)
Q Consensus 93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn 169 (435)
|++++|+++.++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.+.. ......+.+++|
T Consensus 139 L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 139 LYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp EECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred EEccCCcCCcch---hhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 999999999873 67889999999999999998765 5789999999999999876533 333478888888
Q ss_pred CCc
Q psy18204 170 SID 172 (435)
Q Consensus 170 ~i~ 172 (435)
.+.
T Consensus 211 ~i~ 213 (291)
T 1h6t_A 211 ECL 213 (291)
T ss_dssp EEE
T ss_pred ccc
Confidence 765
No 40
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=3.8e-16 Score=143.56 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=131.0
Q ss_pred ccCCCCcceEEEecCCC-cccccc-cccCCCCCCEEEccC-CCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204 14 QYTNPVKDRELDLRGYK-IPVIEN-MGATLDQFDTIDFSN-NDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLP 88 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~-i~~i~~-~~~~l~~L~~L~Ls~-N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~ 88 (435)
.|.++++|+.|++++|. ++.++. .+..+++|+.|++++ |.|+.++ .|..+++|+.|++++|+++.+|. ++.++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--ccccc
Confidence 57889999999999997 998874 678899999999999 9999986 57899999999999999999976 58899
Q ss_pred CCC---eeecCCC-cCCCCCCCCCCCCCCCCC-EEEeecCCccccccchHHHHhcCCccceeeecchh-HHHHhh-----
Q psy18204 89 NLE---TLILTGN-NIQELGDLDPLSTLPKLK-TLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVK-LKALMN----- 157 (435)
Q Consensus 89 ~L~---~L~Ls~N-~i~~l~~~~~l~~l~~L~-~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~-l~~l~~----- 157 (435)
+|+ +|++++| +++.++. ..+..+++|+ .|++++|.++.++.. .+ ..++|+.|++++|+ ++.+..
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~~---~~-~~~~L~~L~L~~n~~l~~i~~~~~~~ 202 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQGY---AF-NGTKLDAVYLNKNKYLTVIDKDAFGG 202 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECTT---TT-TTCEEEEEECTTCTTCCEECTTTTTT
T ss_pred ccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCHh---hc-CCCCCCEEEcCCCCCcccCCHHHhhc
Confidence 998 9999999 9998886 4788999999 999999999988874 22 33899999999995 766532
Q ss_pred h-hcccEEEEecCCCcccc
Q psy18204 158 V-MFGTEIILSGDSIDAGD 175 (435)
Q Consensus 158 ~-~~~~~l~lsgn~i~~~~ 175 (435)
. .....+++++|.+...+
T Consensus 203 l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 203 VYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp CSBCCSEEECTTCCCCCCC
T ss_pred cccCCcEEECCCCccccCC
Confidence 2 34578888888876443
No 41
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=8.4e-16 Score=159.93 Aligned_cols=151 Identities=26% Similarity=0.274 Sum_probs=126.1
Q ss_pred ccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE 91 (435)
Q Consensus 12 ~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~ 91 (435)
.+.+.++++|+.|+|++|.|..++. +..+++|+.|+|++|.|+.++.+..+++|+.|+|++|+|+.++ .+ ..|++|+
T Consensus 58 l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~ 134 (605)
T 1m9s_A 58 VQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GL-VHLPQLE 134 (605)
T ss_dssp CTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GG-GGCTTCS
T ss_pred ChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cc-cCCCccC
Confidence 3467778899999999999998877 6679999999999999999888999999999999999999874 34 7899999
Q ss_pred eeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh---hhhcccEEEEec
Q psy18204 92 TLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM---NVMFGTEIILSG 168 (435)
Q Consensus 92 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~---~~~~~~~l~lsg 168 (435)
.|+|++|+|+.++ .+..+++|+.|+|++|.++.++. +..+++|+.|++++|.++.+. .......+.+++
T Consensus 135 ~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 135 SLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 206 (605)
T ss_dssp EEECCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCS
T ss_pred EEECCCCccCCch---hhcccCCCCEEECcCCcCCCchh-----hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccC
Confidence 9999999998873 67889999999999999987765 478899999999999886553 333457888888
Q ss_pred CCCcc
Q psy18204 169 DSIDA 173 (435)
Q Consensus 169 n~i~~ 173 (435)
|.+..
T Consensus 207 N~l~~ 211 (605)
T 1m9s_A 207 QECLN 211 (605)
T ss_dssp EEEEC
T ss_pred CcCcC
Confidence 77653
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=7.1e-16 Score=148.83 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=131.0
Q ss_pred ccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccc-cccchh------
Q psy18204 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIV-RIAENL------ 83 (435)
Q Consensus 12 ~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~-~i~~~~------ 83 (435)
+..+.++++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.++ .+..+++|+.|++++|++. .+|..+
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred ChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 44577789999999999999999988889999999999999999887 7899999999999997655 566554
Q ss_pred --hcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----
Q psy18204 84 --QENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM----- 156 (435)
Q Consensus 84 --~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~----- 156 (435)
++.+++|++|+|++|+|+.++. .+..+++|+.|+|++|.++.++. .+..+++|+.|++++|.+....
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSALGP----AIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp CCEEESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred hhhccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcCch----hhccCCCCCEEECcCCcchhhhHHHhc
Confidence 2359999999999999998875 78999999999999999998877 3678999999999999876432
Q ss_pred hhhcccEEEEecCCCcc
Q psy18204 157 NVMFGTEIILSGDSIDA 173 (435)
Q Consensus 157 ~~~~~~~l~lsgn~i~~ 173 (435)
.......+++++|.+..
T Consensus 251 ~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLL 267 (328)
T ss_dssp CCCCCCEEECTTCTTCC
T ss_pred CCCCCCEEECCCCCchh
Confidence 22334788888876543
No 43
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=1.1e-15 Score=135.85 Aligned_cols=127 Identities=21% Similarity=0.239 Sum_probs=111.8
Q ss_pred ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC---CCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204 21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG---FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG 97 (435)
Q Consensus 21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (435)
-+.+++++|.++.+|..+. .+|+.|++++|.|+.++. |..+++|+.|+|++|+|+.+++..+..+++|++|+|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3789999999999997553 389999999999998862 78999999999999999999877779999999999999
Q ss_pred CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
|+|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECS-SSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeCCCCcc
Confidence 99998876 4688999999999999999976443 3578999999999999876
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=147.24 Aligned_cols=151 Identities=21% Similarity=0.222 Sum_probs=121.6
Q ss_pred CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
++|++|++++|.++.++. .+..+++|+.|++++|.+++++ .|..+++|++|++++|+|+.+++..++.+++|++|+|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 478999999999998775 6778999999999999998874 5888999999999999999998887788999999999
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecC-CccccccchHHHHhcCCccceeeecchhHHHHh-----hhhcccEEEEecC
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHN-PVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTEIILSGD 169 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~l~lsgn 169 (435)
++|+++.++....+..+++|+.|++++| .++.++.. .+..+++|+.|++++|.++... .......+.+++|
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHH---HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 9999988775346788999999999998 46666543 3567888999999998876542 2223367778877
Q ss_pred CCc
Q psy18204 170 SID 172 (435)
Q Consensus 170 ~i~ 172 (435)
.+.
T Consensus 209 ~l~ 211 (353)
T 2z80_A 209 QHI 211 (353)
T ss_dssp CST
T ss_pred ccc
Confidence 764
No 45
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.4e-15 Score=135.19 Aligned_cols=146 Identities=23% Similarity=0.259 Sum_probs=125.5
Q ss_pred ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204 21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98 (435)
Q Consensus 21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (435)
-+.++.+++.++.+|... .++|+.|++++|.++.++ .|..+++|+.|++++|+|+.+++..+..+++|++|+|++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 467899999999998554 468999999999999886 3789999999999999999999888899999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccEEEEecCCCc
Q psy18204 99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTEIILSGDSID 172 (435)
Q Consensus 99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~l~lsgn~i~ 172 (435)
+|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.++.+... .....+++++|.+.
T Consensus 87 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 87 QLQSLPN-GVFDKLTQLKELALNTNQLQSLPDG---VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCccCH-hHhcCccCCCEEEcCCCcCcccCHh---HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 9998876 3678999999999999999988764 357899999999999998765432 33478888888665
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.62 E-value=4.8e-16 Score=148.97 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=97.4
Q ss_pred ccccCCCCcceEEEecCCCcc-cccccccCCCCCCEEEccCCCCCC-cC-CCCCCCCCCEEEccCCccc-cccchhhcCC
Q psy18204 12 CMQYTNPVKDRELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRK-ID-GFPLLKRLSCLFFNNNRIV-RIAENLQENL 87 (435)
Q Consensus 12 ~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ls~N~i~-~i~~~~~~~l 87 (435)
+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ ++ .+..+++|++|++++|+++ .+|..+ ..+
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l 172 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-GSF 172 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GCC
T ss_pred ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH-hhh
Confidence 445677788888888888887 677777778888888888888873 34 5777788888888888887 455444 566
Q ss_pred C-CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh----hccc
Q psy18204 88 P-NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV----MFGT 162 (435)
Q Consensus 88 ~-~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~----~~~~ 162 (435)
+ +|+.|++++|+++...+ ..+..++ |+.|++++|.++..... .+..+++|+.|++++|.++..... ....
T Consensus 173 ~~~L~~L~L~~N~l~~~~~-~~~~~l~-L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~ 247 (313)
T 1ogq_A 173 SKLFTSMTISRNRLTGKIP-PTFANLN-LAFVDLSRNMLEGDASV---LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247 (313)
T ss_dssp CTTCCEEECCSSEEEEECC-GGGGGCC-CSEEECCSSEEEECCGG---GCCTTSCCSEEECCSSEECCBGGGCCCCTTCC
T ss_pred hhcCcEEECcCCeeeccCC-hHHhCCc-ccEEECcCCcccCcCCH---HHhcCCCCCEEECCCCceeeecCcccccCCCC
Confidence 5 77778887777763222 1444444 66666666666533221 234555566666666555422111 2225
Q ss_pred EEEEecCCCc
Q psy18204 163 EIILSGDSID 172 (435)
Q Consensus 163 ~l~lsgn~i~ 172 (435)
.+++++|.+.
T Consensus 248 ~L~Ls~N~l~ 257 (313)
T 1ogq_A 248 GLDLRNNRIY 257 (313)
T ss_dssp EEECCSSCCE
T ss_pred EEECcCCccc
Confidence 5555555554
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=152.83 Aligned_cols=136 Identities=20% Similarity=0.273 Sum_probs=70.4
Q ss_pred ccCCCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL 90 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L 90 (435)
.|.++++|++|+|++|.|+.+ +..+..+++|+.|+|++|.++.++ .|..+++|++|+|++|+++.+++..+..+++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 344455555555555555543 344445555555555555555554 24555555555555555555544444555555
Q ss_pred CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
++|+|++|.++.+.. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.+.
T Consensus 131 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 131 KSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHH---HHTTCTTCCEEEEESCCCC
T ss_pred CEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChh---HhcccCCCcEEeCCCCcCc
Confidence 555555555554443 2455555555555555555554432 3345555555555555543
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=1.4e-15 Score=150.06 Aligned_cols=131 Identities=18% Similarity=0.306 Sum_probs=66.7
Q ss_pred CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
.+++.|++++|.++.+|. .+..+++|+.|++++|.++.++ .|..+++|++|++++|.++.+++..++.+++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 455555555555555542 2344555555555555555443 3455555555555555555555444455555555555
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
++|+++.++. ..+..+++|++|++++|.++.++.. .+..+++|+.|++++|+++
T Consensus 125 ~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 125 ERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTSSCTTCCEEECCSSCCS
T ss_pred CCCccCcCCH-HHhcCCCCCcEEECCCCccCccChh---hccCCCCCCEEECCCCcCC
Confidence 5555555443 1344555555555555555544332 2344555555555555544
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=9.9e-16 Score=149.17 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=131.0
Q ss_pred ccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccc-hhhcCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAE-NLQENLPN 89 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~-~~~~~l~~ 89 (435)
.+.++++|+.|++++|.++.++ ..+..+++|+.|++++|.|+.++ .+..+++|++|++++|+++.++. ..+..+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 5788999999999999999775 56888999999999999999987 38899999999999999999987 56689999
Q ss_pred CCeeecCCC-cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-----hcccE
Q psy18204 90 LETLILTGN-NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MFGTE 163 (435)
Q Consensus 90 L~~L~Ls~N-~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~~~~ 163 (435)
|++|++++| .++.++. ..+..+++|+.|++++|.++.+... .+..+++|+.|++++|.+..+... .....
T Consensus 151 L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 226 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226 (353)
T ss_dssp CCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEE
T ss_pred CcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCccccchhhhhhhcccccE
Confidence 999999999 5777764 4788899999999999999876432 357889999999999988665443 33478
Q ss_pred EEEecCCCcc
Q psy18204 164 IILSGDSIDA 173 (435)
Q Consensus 164 l~lsgn~i~~ 173 (435)
+++++|.+..
T Consensus 227 L~L~~n~l~~ 236 (353)
T 2z80_A 227 LELRDTDLDT 236 (353)
T ss_dssp EEEESCBCTT
T ss_pred EECCCCcccc
Confidence 8888888764
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=9.7e-16 Score=146.09 Aligned_cols=157 Identities=20% Similarity=0.203 Sum_probs=131.4
Q ss_pred ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC---CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID---GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL 90 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L 90 (435)
.+.++++|+.|++++|.+..++..+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+.+..+..+++|
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred ccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 445678999999999999998877888999999999999998875 58889999999999999998877777899999
Q ss_pred CeeecCCCcCCC--CCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccE
Q psy18204 91 ETLILTGNNIQE--LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTE 163 (435)
Q Consensus 91 ~~L~Ls~N~i~~--l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~ 163 (435)
++|++++|.+++ ++. .+..+++|+.|++++|.++.++.. .+..+++|+.|++++|.++.+.. ......
T Consensus 153 ~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPT---AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp CEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred CEEECCCCccccccchh--HHhhCcCCCEEECCCCCcCCcCHH---HhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 999999999976 443 788899999999999999877543 35788999999999999876533 234588
Q ss_pred EEEecCCCcccc
Q psy18204 164 IILSGDSIDAGD 175 (435)
Q Consensus 164 l~lsgn~i~~~~ 175 (435)
+++++|.+....
T Consensus 228 L~L~~N~l~~~~ 239 (306)
T 2z66_A 228 LDYSLNHIMTSK 239 (306)
T ss_dssp EECTTSCCCBCS
T ss_pred eECCCCCCcccC
Confidence 999999887543
No 51
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3.8e-15 Score=130.30 Aligned_cols=128 Identities=18% Similarity=0.260 Sum_probs=113.2
Q ss_pred cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204 20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG 97 (435)
Q Consensus 20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (435)
..+.+++++++++.+|..+ .++|+.|++++|.++.++ .|..+++|++|++++|+|+.+++..+..+++|++|+|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4578999999999998544 478999999999999886 478999999999999999999988889999999999999
Q ss_pred CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
|+|+.++. ..+..+++|+.|++++|.++.++.. .+..+++|+.|++++|.+.
T Consensus 86 N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCBC
T ss_pred CCccccCH-HHhhCCcccCEEECcCCcceEeCHH---HhcCCcccCEEEecCCCee
Confidence 99998876 3678899999999999999988874 3467999999999999865
No 52
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=2.6e-15 Score=140.28 Aligned_cols=131 Identities=24% Similarity=0.322 Sum_probs=117.1
Q ss_pred cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204 13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET 92 (435)
Q Consensus 13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~ 92 (435)
+.+.++++|+.|++++|.|+.++. +..+++|+.|++++|.++.++.+.. ++|+.|++++|+|+.++ . ++.+++|+.
T Consensus 57 ~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~-l~~l~~L~~ 132 (263)
T 1xeu_A 57 AGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-S-LIHLKNLEI 132 (263)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-G-GTTCTTCCE
T ss_pred hHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCCh-h-hcCcccccE
Confidence 357788999999999999999888 7789999999999999999987766 99999999999999985 3 489999999
Q ss_pred eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204 93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155 (435)
Q Consensus 93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l 155 (435)
|+|++|+|++++ .+..+++|+.|+|++|.++.++. +..+++|+.|++++|++...
T Consensus 133 L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~~-----l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 133 LSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTGG-----LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCTT-----STTCCCCCEEEEEEEEEECC
T ss_pred EECCCCcCCCCh---HHccCCCCCEEECCCCcCcchHH-----hccCCCCCEEeCCCCcccCC
Confidence 999999999875 67889999999999999998733 57899999999999998744
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=152.41 Aligned_cols=153 Identities=24% Similarity=0.262 Sum_probs=132.4
Q ss_pred CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+.+++.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.+. .|..+++|++|+|++|+|+.++...|..+++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 458999999999999875 67888999999999999999884 699999999999999999999988889999999999
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----hhhcccEEEEecC
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTEIILSGD 169 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~l~lsgn 169 (435)
|++|+++.+.+ ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|+++.+. .......+.+++|
T Consensus 111 Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 111 ISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHR---AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTT---SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CCCCccccCCh-hHccccccCCEEECCCCccceeChh---hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 99999988765 4789999999999999999977653 3578999999999999987643 3344588999988
Q ss_pred CCccc
Q psy18204 170 SIDAG 174 (435)
Q Consensus 170 ~i~~~ 174 (435)
.+...
T Consensus 187 ~i~~~ 191 (477)
T 2id5_A 187 NINAI 191 (477)
T ss_dssp CCCEE
T ss_pred cCcEe
Confidence 87643
No 54
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=2.5e-15 Score=148.26 Aligned_cols=172 Identities=20% Similarity=0.215 Sum_probs=94.4
Q ss_pred CCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204 16 TNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET 92 (435)
Q Consensus 16 ~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~ 92 (435)
.++++|++|++++|.++.++ ..+..+++|+.|+|++|.++.++ .|..+++|++|++++|.++.++..+++.+++|++
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 34455555666655555444 24455555555555555555553 3455555555555555555555555455555555
Q ss_pred eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccch----------------------------------------
Q psy18204 93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYR---------------------------------------- 132 (435)
Q Consensus 93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~---------------------------------------- 132 (435)
|++++|+++.+++ ..+..+++|+.|++++|.++.++...
T Consensus 146 L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 146 LSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp EECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred EECCCCccCccCh-hhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence 5555555555443 24455555555555555544321000
Q ss_pred ----------------HHHHhcCCccceeeecchhHHHHh-----hhhcccEEEEecCCCcccccceeecCCccccc
Q psy18204 133 ----------------LYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTEIILSGDSIDAGDQALFIMNHRTRLD 188 (435)
Q Consensus 133 ----------------~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~l~lsgn~i~~~~~~~~i~nh~~~lD 188 (435)
...+..+++|+.|++++|.++.+. .......+.+++|.+...........++..+|
T Consensus 225 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 301 (390)
T ss_dssp CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEE
T ss_pred cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEE
Confidence 012467788999999999886542 23344788888888765433332233333333
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=2.3e-15 Score=157.04 Aligned_cols=159 Identities=20% Similarity=0.248 Sum_probs=90.0
Q ss_pred CCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204 16 TNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET 92 (435)
Q Consensus 16 ~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~ 92 (435)
.++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++ .|+.+++|++|+|++|.|+.+|+.+|+.+++|++
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 34455666666666655444 34555556666666666665554 3455556666666666666555555555566666
Q ss_pred eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccch----------------------------------------
Q psy18204 93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYR---------------------------------------- 132 (435)
Q Consensus 93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~---------------------------------------- 132 (435)
|+|++|.++.+++ ..+..+++|+.|+|++|.++.++...
T Consensus 152 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 152 LSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp EECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred EEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence 6666665555443 24555555555555555544322100
Q ss_pred ----------------HHHHhcCCccceeeecchhHHHHh-----hhhcccEEEEecCCCcccc
Q psy18204 133 ----------------LYVAFKLPQVKLLDFSKVKLKALM-----NVMFGTEIILSGDSIDAGD 175 (435)
Q Consensus 133 ----------------~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~~l~lsgn~i~~~~ 175 (435)
...+..+++|+.|++++|.++.+. .......+.+++|.+....
T Consensus 231 ~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 294 (597)
T 3oja_B 231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294 (597)
T ss_dssp CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE
T ss_pred CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC
Confidence 012466788888888888876542 2333477888888776543
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=1.4e-15 Score=145.59 Aligned_cols=174 Identities=16% Similarity=0.112 Sum_probs=125.4
Q ss_pred CCCCcceEEEecCCCcccccccccCC-----CCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccc---cch-hh
Q psy18204 16 TNPVKDRELDLRGYKIPVIENMGATL-----DQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRI---AEN-LQ 84 (435)
Q Consensus 16 ~~~~~L~~L~L~~n~i~~i~~~~~~l-----~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i---~~~-~~ 84 (435)
.++++|+.|++++|.++.+|..+..+ ++|++|+|++|.|+.++ .|..+++|+.|++++|++... +.. .+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 67889999999999998777655555 88999999999998886 588899999999999987642 222 23
Q ss_pred cCCCCCCeeecCCCcCCCCCCC--CCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhhh--c
Q psy18204 85 ENLPNLETLILTGNNIQELGDL--DPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVM--F 160 (435)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~--~ 160 (435)
+.+++|++|+|++|+|+.++.+ ..+..+++|+.|+|++|.++..+... .+..+++|+.|++++|.++.+.... .
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~Ls~N~l~~ip~~~~~~ 275 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP--SCDWPSQLNSLNLSFTGLKQVPKGLPAK 275 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS--CCCCCTTCCEEECTTSCCSSCCSSCCSE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh--hhhhcCCCCEEECCCCccChhhhhccCC
Confidence 7888999999999988854431 13356788999999999988654211 2345788999999999888665444 3
Q ss_pred ccEEEEecCCCcccccceeecCCccccccchhchh
Q psy18204 161 GTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGC 195 (435)
Q Consensus 161 ~~~l~lsgn~i~~~~~~~~i~nh~~~lD~l~l~~~ 195 (435)
...+++++|.+...+. ..+...+..+.+.++
T Consensus 276 L~~L~Ls~N~l~~~p~----~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 276 LSVLDLSYNRLDRNPS----PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEEEECCSSCCCSCCC----TTTSCEEEEEECTTC
T ss_pred ceEEECCCCCCCCChh----HhhCCCCCEEeccCC
Confidence 4778888888876532 233444444444444
No 57
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=2.4e-16 Score=150.78 Aligned_cols=174 Identities=18% Similarity=0.084 Sum_probs=128.0
Q ss_pred ccCCCCcceEEEecCCCcc-cccccc--cCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCccccccchhh
Q psy18204 14 QYTNPVKDRELDLRGYKIP-VIENMG--ATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRIVRIAENLQ 84 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~-~i~~~~--~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i~~i~~~~~ 84 (435)
.+..+++|++|++++|.+. .+|..+ ..+++|+.|+|++|.++... .+..+++|++|++++|+|+.+++..+
T Consensus 86 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 165 (310)
T 4glp_A 86 RVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV 165 (310)
T ss_dssp HHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred HhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence 3334566999999999988 455554 77899999999999998631 34578899999999999998887777
Q ss_pred cCCCCCCeeecCCCcCCC---CCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----
Q psy18204 85 ENLPNLETLILTGNNIQE---LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM----- 156 (435)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~---l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~----- 156 (435)
+.+++|++|+|++|++.. ++....+..+++|++|+|++|.++.++......+..+++|+.||+++|+++...
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 899999999999998754 322224467889999999999998766543334578899999999999987651
Q ss_pred hh---hcccEEEEecCCCcccccceeecCCcccccc
Q psy18204 157 NV---MFGTEIILSGDSIDAGDQALFIMNHRTRLDW 189 (435)
Q Consensus 157 ~~---~~~~~l~lsgn~i~~~~~~~~i~nh~~~lD~ 189 (435)
.. .....+++++|.+...+..+. .++..+|.
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDL 279 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEEC
T ss_pred hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEEC
Confidence 11 245788888888874433332 34444443
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=2.3e-15 Score=157.04 Aligned_cols=151 Identities=17% Similarity=0.231 Sum_probs=127.6
Q ss_pred CCCcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204 17 NPVKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL 93 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L 93 (435)
.+.+++.|++++|.+..+|. .+..+++|+.|+|++|.|+.++ .|+.+++|+.|+|++|.|+.+++..++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35788999999999999884 4677999999999999999986 69999999999999999999999888999999999
Q ss_pred ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh--hhhcccEEEEecCCC
Q psy18204 94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM--NVMFGTEIILSGDSI 171 (435)
Q Consensus 94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~--~~~~~~~l~lsgn~i 171 (435)
+|++|.|+.++. ..+..+++|++|+|++|.++.++.. .+..+++|+.|++++|.++.+. .......+.+++|.+
T Consensus 129 ~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCChh---hhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcc
Confidence 999999999886 3578999999999999999987664 3578999999999999887542 122224555555444
No 59
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=2.9e-15 Score=146.45 Aligned_cols=135 Identities=26% Similarity=0.309 Sum_probs=118.3
Q ss_pred cC-CCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204 15 YT-NPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL 90 (435)
Q Consensus 15 ~~-~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L 90 (435)
+. ++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..|..+++|
T Consensus 59 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138 (361)
T ss_dssp SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence 44 8899999999999999887 56888999999999999999986 48999999999999999999988888999999
Q ss_pred CeeecCCCcCCCCCCCCCC---CCCCCCCEEEeecCCccccccchHHHHhcCCc--cceeeecchhHH
Q psy18204 91 ETLILTGNNIQELGDLDPL---STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ--VKLLDFSKVKLK 153 (435)
Q Consensus 91 ~~L~Ls~N~i~~l~~~~~l---~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~--L~~Ldl~~n~l~ 153 (435)
+.|+|++|+|+.++. ..+ ..+++|+.|+|++|.|+.++.. .+..++. |+.|++++|.+.
T Consensus 139 ~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 139 QKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCHH---HHHHSCHHHHTTEECCSSCEE
T ss_pred CEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCHH---HhhhccHhhcceEEecCCCcc
Confidence 999999999999886 244 5799999999999999988754 4567777 488999999875
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.59 E-value=4.4e-15 Score=143.13 Aligned_cols=148 Identities=22% Similarity=0.318 Sum_probs=84.9
Q ss_pred CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCc----CCCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204 19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKI----DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL 93 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L 93 (435)
++|++|++++|.++.++ ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.++.++..++ ++|++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEE
Confidence 46667777777666554 3355566666666666666532 135556666666666666666654432 566666
Q ss_pred ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh----hcccEEEEecC
Q psy18204 94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV----MFGTEIILSGD 169 (435)
Q Consensus 94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~----~~~~~l~lsgn 169 (435)
++++|+++.+.. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|+++.+... .....+++++|
T Consensus 198 ~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 198 HLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNG---SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp ECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTT---TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred ECCCCcCCccCH-HHhcCCCCCCEEECCCCcCceeChh---hccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence 666666655543 2555666666666666666654432 234566666666666665544322 22355666666
Q ss_pred CCcc
Q psy18204 170 SIDA 173 (435)
Q Consensus 170 ~i~~ 173 (435)
.+..
T Consensus 274 ~i~~ 277 (330)
T 1xku_A 274 NISA 277 (330)
T ss_dssp CCCC
T ss_pred cCCc
Confidence 5553
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.59 E-value=1e-15 Score=146.73 Aligned_cols=150 Identities=18% Similarity=0.240 Sum_probs=99.9
Q ss_pred CcceEEEecCCCcc---cccccccCCCCCCEEEccC-CCCCC-cC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204 19 VKDRELDLRGYKIP---VIENMGATLDQFDTIDFSN-NDIRK-ID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET 92 (435)
Q Consensus 19 ~~L~~L~L~~n~i~---~i~~~~~~l~~L~~L~Ls~-N~l~~-l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~ 92 (435)
.+++.|+|++|.++ .+|..+..+++|+.|++++ |.+.+ ++ .|..+++|++|++++|+++...+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46777888888776 4666777777888888874 77753 34 5777777888888888877433444477778888
Q ss_pred eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcc-ccccchHHHHhcCC-ccceeeecchhHHHH----hhhhcccEEEE
Q psy18204 93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI-NRPHYRLYVAFKLP-QVKLLDFSKVKLKAL----MNVMFGTEIIL 166 (435)
Q Consensus 93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~l~-~L~~Ldl~~n~l~~l----~~~~~~~~l~l 166 (435)
|+|++|.++...+ ..+..+++|++|+|++|.++ .+|. .+..++ +|+.|++++|+++.. ........+++
T Consensus 130 L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~L 204 (313)
T 1ogq_A 130 LDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPD----SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204 (313)
T ss_dssp EECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEEC
T ss_pred EeCCCCccCCcCC-hHHhcCCCCCeEECcCCcccCcCCH----HHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEEC
Confidence 8888887763222 26677777888888888777 5554 245665 777777777776521 11112466777
Q ss_pred ecCCCcc
Q psy18204 167 SGDSIDA 173 (435)
Q Consensus 167 sgn~i~~ 173 (435)
++|.+..
T Consensus 205 s~N~l~~ 211 (313)
T 1ogq_A 205 SRNMLEG 211 (313)
T ss_dssp CSSEEEE
T ss_pred cCCcccC
Confidence 7776653
No 62
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=6.9e-15 Score=130.76 Aligned_cols=109 Identities=27% Similarity=0.405 Sum_probs=101.5
Q ss_pred CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
+.++++|+|++|.|+.+|..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..|..+++|+.|+|
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 35899999999999999988889999999999999999996 5999999999999999999999988899999999999
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCccc
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~ 127 (435)
++|+|+.++. ..+..+++|+.|+|++|++..
T Consensus 110 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 110 HGNDISVVPE-GAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCT-TTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCeeCh-hhhhcCccccEEEeCCCCeec
Confidence 9999999886 468899999999999999874
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=3.7e-16 Score=149.64 Aligned_cols=159 Identities=18% Similarity=0.066 Sum_probs=113.1
Q ss_pred CCCcceEEEecCCCcc-cccccc--cCCCCCCEEEccCCCCCCcC-CCCCC-----CCCCEEEccCCccccccchhhcCC
Q psy18204 17 NPVKDRELDLRGYKIP-VIENMG--ATLDQFDTIDFSNNDIRKID-GFPLL-----KRLSCLFFNNNRIVRIAENLQENL 87 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~-~i~~~~--~~l~~L~~L~Ls~N~l~~l~-~l~~l-----~~L~~L~ls~N~i~~i~~~~~~~l 87 (435)
++++|++|++++|.++ .+|..+ ..+++|+.|+|++|.+++++ .+..+ ++|++|++++|+|+.+++..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5778888888888887 566543 67888888888888888775 23333 788888888888888876666888
Q ss_pred CCCCeeecCCCcCCCC---CCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh--h----h
Q psy18204 88 PNLETLILTGNNIQEL---GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM--N----V 158 (435)
Q Consensus 88 ~~L~~L~Ls~N~i~~l---~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~--~----~ 158 (435)
++|++|+|++|++... +....+..+++|+.|+|++|.++.++......+..+++|+.|++++|+++... . .
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 8888888888886432 11013367888888888888888655433334567788888888888877632 1 1
Q ss_pred hcccEEEEecCCCcccc
Q psy18204 159 MFGTEIILSGDSIDAGD 175 (435)
Q Consensus 159 ~~~~~l~lsgn~i~~~~ 175 (435)
.....+++++|.+...+
T Consensus 253 ~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp TTCCEEECTTSCCSSCC
T ss_pred CCCCEEECCCCccChhh
Confidence 23477888888776433
No 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.59 E-value=8.5e-15 Score=141.13 Aligned_cols=147 Identities=22% Similarity=0.305 Sum_probs=78.5
Q ss_pred CcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
++++.|++++|.|+.++. .+..+++|++|+|++|.++.+ + .|..+++|++|++++|.++.+|..++ ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEEC
Confidence 456666666666665553 455666666666666666665 2 46666666666666666666654432 45555556
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHHHHhhh--hcccEEEEecCCC
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLKALMNV--MFGTEIILSGDSI 171 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~--~~~~~l~lsgn~i 171 (435)
++|.++.++. ..+..+++|+.|++++|.++. +... .+..+++|+.|++++|.++.+... .....+.+++|.+
T Consensus 129 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENG---AFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTT---GGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCC
T ss_pred CCCcccccCH-hHhcCCccccEEECCCCcCCccCcChh---hccCCCCcCEEECCCCccccCCccccccCCEEECCCCcC
Confidence 5555555443 234555555555555555542 1111 234455555555555554433221 1224455555444
Q ss_pred c
Q psy18204 172 D 172 (435)
Q Consensus 172 ~ 172 (435)
.
T Consensus 205 ~ 205 (330)
T 1xku_A 205 T 205 (330)
T ss_dssp C
T ss_pred C
Confidence 3
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=6.1e-15 Score=142.30 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=54.8
Q ss_pred ccCCCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE 91 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~ 91 (435)
.+.++++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++ .+. ++|++|++++|.++.+++..+..+++|+
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 455666666666666666654 445556666666666666666655 222 5666666666666666666556677777
Q ss_pred eeecCCCcCC
Q psy18204 92 TLILTGNNIQ 101 (435)
Q Consensus 92 ~L~Ls~N~i~ 101 (435)
+|++++|.++
T Consensus 151 ~L~l~~n~l~ 160 (332)
T 2ft3_A 151 CIEMGGNPLE 160 (332)
T ss_dssp EEECCSCCCB
T ss_pred EEECCCCccc
Confidence 7777777664
No 66
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=4e-15 Score=153.83 Aligned_cols=125 Identities=26% Similarity=0.356 Sum_probs=107.9
Q ss_pred cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204 20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98 (435)
Q Consensus 20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (435)
.|+.|+|++|.|+.+|. ++.+++|+.|+|++|.|+.+| .++.+++|+.|+|++|+|+.+| .+ +.+++|+.|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l-~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV-ANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc-CCCCCCcEEECCCC
Confidence 58899999999999987 778999999999999999887 6889999999999999999986 44 88999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeee
Q psy18204 99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDF 147 (435)
Q Consensus 99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl 147 (435)
+|+.+.....+..+++|+.|+|++|+++.++.....++..+|+|+.||+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9988841137888999999999999999888776667778999999874
No 67
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.58 E-value=8.4e-15 Score=142.01 Aligned_cols=149 Identities=23% Similarity=0.240 Sum_probs=79.4
Q ss_pred cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC----------------------CCCCCCCCEEEcc
Q psy18204 15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG----------------------FPLLKRLSCLFFN 72 (435)
Q Consensus 15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~----------------------l~~l~~L~~L~ls 72 (435)
+.++++|+.|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|+++
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG 229 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEcc
Confidence 4455555555555555554443 3345555555555555554443 4445555555555
Q ss_pred CCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhH
Q psy18204 73 NNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKL 152 (435)
Q Consensus 73 ~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l 152 (435)
+|.++.+++ +..+++|++|++++|.++.++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 230 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 230 NNKITDLSP--LANLSQLTWLEIGTNQISDIN---AVKDLTKLKMLNVGSNQISDISV-----LNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSSCC
T ss_pred CCccCCCcc--hhcCCCCCEEECCCCccCCCh---hHhcCCCcCEEEccCCccCCChh-----hcCCCCCCEEECcCCcC
Confidence 555555544 355556666666666555542 34555666666666666655532 34566666666666655
Q ss_pred HHH-----hhhhcccEEEEecCCCccc
Q psy18204 153 KAL-----MNVMFGTEIILSGDSIDAG 174 (435)
Q Consensus 153 ~~l-----~~~~~~~~l~lsgn~i~~~ 174 (435)
+.. ........+++++|.+...
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCcChhHhhccccCCEEEccCCccccc
Confidence 432 1222335666666655433
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=144.39 Aligned_cols=156 Identities=12% Similarity=0.085 Sum_probs=71.5
Q ss_pred CCCCcceEEEecCCCcccc-c----ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCcccc---ccchh-h
Q psy18204 16 TNPVKDRELDLRGYKIPVI-E----NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVR---IAENL-Q 84 (435)
Q Consensus 16 ~~~~~L~~L~L~~n~i~~i-~----~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~---i~~~~-~ 84 (435)
.++++|++|++++|.++.. + ..+..+++|+.|+|++|.++.++ .+..+++|++|++++|++.. ++... +
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 4455555555555555531 1 11223555555555555555543 34555555555555555443 21111 1
Q ss_pred cCCCCCCeeecCCCcCCCCCCCC--CCCCCCCCCEEEeecCCcccc-ccchHHHHhcCCccceeeecchhHHHHhhhh--
Q psy18204 85 ENLPNLETLILTGNNIQELGDLD--PLSTLPKLKTLCLLHNPVINR-PHYRLYVAFKLPQVKLLDFSKVKLKALMNVM-- 159 (435)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~l~~~~--~l~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~-- 159 (435)
+.+++|++|+|++|+++.++... .+..+++|++|+|++|.++.. |... .....+++|+.|++++|+++.+....
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 272 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLEQVPKGLPA 272 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCCSCCSCCCS
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCCchhhhhcC
Confidence 34555555555555554433200 123445555555555555543 2210 00111245555555555555432222
Q ss_pred cccEEEEecCCCc
Q psy18204 160 FGTEIILSGDSID 172 (435)
Q Consensus 160 ~~~~l~lsgn~i~ 172 (435)
....+++++|.+.
T Consensus 273 ~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 273 KLRVLDLSSNRLN 285 (310)
T ss_dssp CCSCEECCSCCCC
T ss_pred CCCEEECCCCcCC
Confidence 2245555555554
No 69
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.57 E-value=5.8e-15 Score=154.03 Aligned_cols=155 Identities=21% Similarity=0.283 Sum_probs=124.7
Q ss_pred CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
++++++|+|++|.++.++ ..+..+++|+.|+|++|.++.++ .|..+++|++|++++|+++.+++..++++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 367899999999998776 47788999999999999999884 588999999999999999998777678999999999
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHHHHhhh-----hc----ccE
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-----MF----GTE 163 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-----~~----~~~ 163 (435)
|++|.++.++.. .+..+++|++|++++|.++. +|. .+..+++|+.|++++|.++.+... .. ...
T Consensus 111 L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 111 AVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPA----YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCG----GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred ccCCcccccccc-ccCCCCCCCEEeCCCCcccceechH----hHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 999999888753 78899999999999999885 455 367899999999999987654221 11 136
Q ss_pred EEEecCCCcccccc
Q psy18204 164 IILSGDSIDAGDQA 177 (435)
Q Consensus 164 l~lsgn~i~~~~~~ 177 (435)
+.+++|.+......
T Consensus 186 L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQ 199 (606)
T ss_dssp EECTTCCCCEECTT
T ss_pred eeccCCCcceeCcc
Confidence 77777777644433
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=1.3e-15 Score=154.87 Aligned_cols=168 Identities=17% Similarity=0.116 Sum_probs=101.2
Q ss_pred CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccch--------------
Q psy18204 18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAEN-------------- 82 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~-------------- 82 (435)
+++|+.|+|++|.++.++ ..+..+++|+.|+|++|.|++...+..+++|+.|+|++|.|+.++..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 446777777777777554 45666777777777777776655566666676666666666654421
Q ss_pred --hhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---
Q psy18204 83 --LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN--- 157 (435)
Q Consensus 83 --~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~--- 157 (435)
....+++|+.|+|++|.|+.+.+ ..+..+++|+.|+|++|.++.++... ....+++|+.|++++|.++.+..
T Consensus 113 ~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~--l~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (487)
T 3oja_A 113 RVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAE--LAASSDTLEHLNLQYNFIYDVKGQVV 189 (487)
T ss_dssp CEEECCCSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTSCCCEEEGGG--GGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred CCCccccCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCCCCCCcChHH--HhhhCCcccEEecCCCcccccccccc
Confidence 01235667777777777776654 25666777777777777777543221 12356777777777777655422
Q ss_pred hhcccEEEEecCCCcccccceeecCCccccc
Q psy18204 158 VMFGTEIILSGDSIDAGDQALFIMNHRTRLD 188 (435)
Q Consensus 158 ~~~~~~l~lsgn~i~~~~~~~~i~nh~~~lD 188 (435)
......+++++|.+......+..+.++..+|
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220 (487)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred CCCCCEEECCCCCCCCCCHhHcCCCCccEEE
Confidence 2233666677766665444333333333333
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.57 E-value=7.8e-15 Score=151.70 Aligned_cols=153 Identities=23% Similarity=0.335 Sum_probs=129.8
Q ss_pred CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+.+++.|++++|.++.++ ..+..+++|++|+|++|.++.++ .|..+++|++|++++|+++.+++..++++++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 457999999999999876 56888999999999999999885 589999999999999999999888889999999999
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHHHHh-----hhhcc----cE
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFG----TE 163 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~----~~ 163 (435)
+++|+++.++.. .+..+++|++|++++|.++. +|. .+..+++|+.|++++|.++.+. ..... ..
T Consensus 107 L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 107 AVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CTTSCCCCSTTC-SCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred ccccccccCCCc-cccccccccEEecCCCccceecChh----hhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 999999998864 68999999999999999986 455 3688999999999999876532 22222 57
Q ss_pred EEEecCCCcccc
Q psy18204 164 IILSGDSIDAGD 175 (435)
Q Consensus 164 l~lsgn~i~~~~ 175 (435)
+.+++|.+....
T Consensus 182 L~l~~n~l~~~~ 193 (570)
T 2z63_A 182 LDLSLNPMNFIQ 193 (570)
T ss_dssp EECTTCCCCEEC
T ss_pred cccCCCCceecC
Confidence 888888776443
No 72
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.56 E-value=1.6e-14 Score=139.94 Aligned_cols=130 Identities=22% Similarity=0.253 Sum_probs=63.8
Q ss_pred cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+..+++|++|++++|.++.++. +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++. +..+++|+.|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEE
Confidence 3444455555555555554444 34455555555555555555445555555555555555555433 24455555555
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA 154 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~ 154 (435)
+++|...... ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.+..
T Consensus 139 l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 139 LGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECTTSCCCC
T ss_pred CCCCCCcccc--cchhhCCCCcEEEecCCCcCCchh-----hccCCCCCEEEccCCcccc
Confidence 5555322211 134455555555555555554433 2455555555555555443
No 73
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.56 E-value=4.1e-15 Score=155.13 Aligned_cols=134 Identities=22% Similarity=0.184 Sum_probs=62.0
Q ss_pred cCCCCcceEEEecCCCcccc---cccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccc-hhhcCCCC
Q psy18204 15 YTNPVKDRELDLRGYKIPVI---ENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAE-NLQENLPN 89 (435)
Q Consensus 15 ~~~~~~L~~L~L~~n~i~~i---~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~-~~~~~l~~ 89 (435)
+.++++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.+++ ..+..+++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 34455555555555555433 333444555555555555554443 34445555555555555554433 23344455
Q ss_pred CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccc--cccchHHHHhcCCccceeeecchhHH
Q psy18204 90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN--RPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~--~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
|++|++++|.++...+ ..+..+++|+.|++++|.++. ++. .+..+++|+.|++++|.++
T Consensus 426 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSN----VFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp CCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCC
T ss_pred CCEEECcCCCCCccch-hhhcCCCCCCEEECCCCcCCCcchHH----hhccCCCCCEEECCCCcCC
Confidence 5555555554443322 134444444444444444443 222 1234444444444444443
No 74
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.56 E-value=1.4e-14 Score=139.74 Aligned_cols=132 Identities=16% Similarity=0.219 Sum_probs=84.7
Q ss_pred ccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCcccc--ccchhhcCC
Q psy18204 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVR--IAENLQENL 87 (435)
Q Consensus 12 ~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~--i~~~~~~~l 87 (435)
+..+.++++|+.|++++|.++.+|.... ++|+.|++++|.++.++ .+..+++|+.|++++|.++. +.+..+..+
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC
T ss_pred HhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC
Confidence 3467888999999999999998886543 78999999999998886 37888889999999888864 444444555
Q ss_pred CCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 88 PNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 88 ~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
+|+.|++++|+++.++. .+ .++|+.|++++|.++.++.. .+..+++|+.|++++|+++
T Consensus 173 -~L~~L~l~~n~l~~l~~--~~--~~~L~~L~l~~n~i~~~~~~---~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 173 -KLNYLRISEAKLTGIPK--DL--PETLNELHLDHNKIQAIELE---DLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp -CCSCCBCCSSBCSSCCS--SS--CSSCSCCBCCSSCCCCCCTT---SSTTCTTCSCCBCCSSCCC
T ss_pred -ccCEEECcCCCCCccCc--cc--cCCCCEEECCCCcCCccCHH---HhcCCCCCCEEECCCCcCC
Confidence 56666666666555443 11 13444444444444443321 1234444444444444443
No 75
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.56 E-value=6.3e-15 Score=153.75 Aligned_cols=158 Identities=22% Similarity=0.303 Sum_probs=127.6
Q ss_pred CCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 18 PVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+.+++.|++++|.|+.+ +..+..+++|++|+|++|.++.+. .|..+++|++|++++|+++.+++..++.+++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 34789999999999977 467888999999999999998874 689999999999999999988777779999999999
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh-----hhhccc--EEEEe
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM-----NVMFGT--EIILS 167 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~-----~~~~~~--~l~ls 167 (435)
+++|+++.++.. .+..+++|++|++++|.++.++.. .+..+++|+.|++++|.++.+. ...... .+.++
T Consensus 112 L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 112 FIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLP---KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCC---TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred ccccCcccCCcc-hhccCCcccEEECCCCcccccCcc---cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 999999987543 788999999999999999876322 1245899999999999886542 222234 78888
Q ss_pred cCCCccccccee
Q psy18204 168 GDSIDAGDQALF 179 (435)
Q Consensus 168 gn~i~~~~~~~~ 179 (435)
+|.+....+..+
T Consensus 188 ~n~l~~~~~~~~ 199 (606)
T 3t6q_A 188 GNDIAGIEPGAF 199 (606)
T ss_dssp TCCCCEECTTTT
T ss_pred CCccCccChhHh
Confidence 888775544433
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.56 E-value=1.1e-14 Score=152.10 Aligned_cols=143 Identities=22% Similarity=0.227 Sum_probs=118.9
Q ss_pred cccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204 13 MQYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPN 89 (435)
Q Consensus 13 ~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~ 89 (435)
..|.++++|+.|+|++|+|+.|+ +.+..+++|++|+|++|.|+.++ .|.++++|++|++++|+|+.+++..|+.+++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 46889999999999999999887 56889999999999999999987 5899999999999999999999888899999
Q ss_pred CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCc-cceeeecchhHHHH
Q psy18204 90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ-VKLLDFSKVKLKAL 155 (435)
Q Consensus 90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~-L~~Ldl~~n~l~~l 155 (435)
|++|+|++|.++.+.....+..+++|++|+|++|.++.++...+..+..++. +..++++.|.+..+
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 216 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence 9999999999987654346788999999999999999776544333333332 33566666665443
No 77
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.56 E-value=1.2e-14 Score=146.24 Aligned_cols=131 Identities=27% Similarity=0.338 Sum_probs=94.3
Q ss_pred CcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
++|+.|++++|.+..+ +..+..+++|+.|++++|.+++++ .|..+++|+.|++++|.++.+++..++.+++|++|+|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 4677777777777743 455667777777777777777664 5777777777777777777776666677777777777
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
++|+++.+.+ ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|+++
T Consensus 355 s~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 355 SYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCBC
T ss_pred CCCcccccCh-hhccccccccEEECCCCccccCCHh---HhccCCcccEEEccCCCcc
Confidence 7777776643 3667777777777777777776653 3456777777777777765
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=1.3e-15 Score=146.16 Aligned_cols=170 Identities=16% Similarity=0.112 Sum_probs=115.9
Q ss_pred CCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccch-------------
Q psy18204 17 NPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAEN------------- 82 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~------------- 82 (435)
.+++|++|+|++|.++.++ ..+..+++|+.|+|++|.+++...+..+++|++|++++|+|+.++..
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l 111 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence 4557777788777777655 45667777777777777777665566677777777777776654321
Q ss_pred ---hhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-
Q psy18204 83 ---LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV- 158 (435)
Q Consensus 83 ---~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~- 158 (435)
....+++|++|++++|+++.+++ ..+..+++|+.|+|++|.++.++... ....+++|+.|++++|.++.+...
T Consensus 112 ~~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~ 188 (317)
T 3o53_A 112 SRVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAE--LAASSDTLEHLNLQYNFIYDVKGQV 188 (317)
T ss_dssp SEEEECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEEEGGG--GGGGTTTCCEEECTTSCCCEEECCC
T ss_pred CCcCccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcccHHH--HhhccCcCCEEECCCCcCccccccc
Confidence 01345678888888888887765 36777889999999999988764321 224678899999999988765332
Q ss_pred --hcccEEEEecCCCcccccceeecCCcccccc
Q psy18204 159 --MFGTEIILSGDSIDAGDQALFIMNHRTRLDW 189 (435)
Q Consensus 159 --~~~~~l~lsgn~i~~~~~~~~i~nh~~~lD~ 189 (435)
.....+++++|.+......+....++..+|.
T Consensus 189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred ccccCCEEECCCCcCCcchhhhcccCcccEEEC
Confidence 3347888888888755444433444444443
No 79
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.55 E-value=1.3e-14 Score=153.60 Aligned_cols=160 Identities=25% Similarity=0.234 Sum_probs=99.9
Q ss_pred ccCCCCcceEEEecCCCcc-ccc-ccccCCCCCCEEEccCCCCCCc---------------------------C-CCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIP-VIE-NMGATLDQFDTIDFSNNDIRKI---------------------------D-GFPLL 63 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~-~i~-~~~~~l~~L~~L~Ls~N~l~~l---------------------------~-~l~~l 63 (435)
.+.++++|+.|++++|.+. .++ ..+..+++|+.|++++|.++.+ + .+..+
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 4556666677777766665 343 3444555555555555554332 2 35666
Q ss_pred CCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCC-------CCCCCCCCCCCEEEeecCCccccccchHHHH
Q psy18204 64 KRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD-------LDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136 (435)
Q Consensus 64 ~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~-------~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~ 136 (435)
++|+.|++++|+|+.+++..+..+++|++|+|++|+++.++. ...+..+++|+.|+|++|.++.+|.. .+
T Consensus 480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~---~~ 556 (680)
T 1ziw_A 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE---VF 556 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT---TT
T ss_pred CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH---Hc
Confidence 777777777777777766666777777777777777765421 11356677777777777777766653 34
Q ss_pred hcCCccceeeecchhHHHHhhhh-----cccEEEEecCCCccccc
Q psy18204 137 FKLPQVKLLDFSKVKLKALMNVM-----FGTEIILSGDSIDAGDQ 176 (435)
Q Consensus 137 ~~l~~L~~Ldl~~n~l~~l~~~~-----~~~~l~lsgn~i~~~~~ 176 (435)
..+++|+.|++++|+++.+.... ....+++++|.+.....
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 56777777777777776554332 33677777777664443
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=3.4e-15 Score=151.84 Aligned_cols=171 Identities=19% Similarity=0.138 Sum_probs=135.1
Q ss_pred cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC------------------CCCCCCCCEEEccCC
Q psy18204 13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG------------------FPLLKRLSCLFFNNN 74 (435)
Q Consensus 13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~------------------l~~l~~L~~L~ls~N 74 (435)
..|.++++|+.|+|++|.++.++. +..+++|+.|+|++|.|++++. ...+++|+.|++++|
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N 130 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSS
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCC
Confidence 467889999999999999986665 7789999999999998876531 123577899999999
Q ss_pred ccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCC-CCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 75 RIVRIAENLQENLPNLETLILTGNNIQELGDLDPLS-TLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 75 ~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~-~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
.|+.+++..++.+++|+.|+|++|.|+.... ..+. .+++|+.|+|++|.++.++.. ..+++|+.|++++|.++
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~~-----~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp CCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSSCCC
T ss_pred CCCCCCchhhcCCCCCCEEECCCCCCCCcCh-HHHhhhCCcccEEecCCCcccccccc-----ccCCCCCEEECCCCCCC
Confidence 9998877666899999999999999987654 2444 789999999999999988764 46999999999999987
Q ss_pred HHhh----hhcccEEEEecCCCcccccceeecCCccccccc
Q psy18204 154 ALMN----VMFGTEIILSGDSIDAGDQALFIMNHRTRLDWN 190 (435)
Q Consensus 154 ~l~~----~~~~~~l~lsgn~i~~~~~~~~i~nh~~~lD~l 190 (435)
.+.. ......+++++|.+...+..+..+.++..+|..
T Consensus 205 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcC
Confidence 6533 344589999999988655544444445554443
No 81
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.54 E-value=2e-14 Score=144.50 Aligned_cols=80 Identities=20% Similarity=0.155 Sum_probs=36.9
Q ss_pred CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh-----hhcccE
Q psy18204 89 NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN-----VMFGTE 163 (435)
Q Consensus 89 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~-----~~~~~~ 163 (435)
+|+.|++++|.++.... ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|.++.+.. ......
T Consensus 276 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDN---AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp CCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred CceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChh---HhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 34444444444433322 2445555555555555555544322 23445555555555555543311 122245
Q ss_pred EEEecCCCc
Q psy18204 164 IILSGDSID 172 (435)
Q Consensus 164 l~lsgn~i~ 172 (435)
+++++|.+.
T Consensus 352 L~Ls~N~l~ 360 (455)
T 3v47_A 352 LDLSYNHIR 360 (455)
T ss_dssp EECCSSCCC
T ss_pred EECCCCccc
Confidence 555555544
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.54 E-value=2.5e-14 Score=147.38 Aligned_cols=125 Identities=20% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCCcceEEEecCCCccc-cc---ccccCCCCCCEEEccCCCCCCcC----CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204 17 NPVKDRELDLRGYKIPV-IE---NMGATLDQFDTIDFSNNDIRKID----GFPLLKRLSCLFFNNNRIVRIAENLQENLP 88 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~-i~---~~~~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~ 88 (435)
++++|+.|++++|.+.. ++ ..+..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.+|..+ +.++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC-QWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCC-CCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhh-cccc
Confidence 34555556666555552 21 22344555555555555555543 1455555555555555555554433 4555
Q ss_pred CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 89 NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 89 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
+|++|++++|+|+.++. .+ .++|+.|++++|.++.++ ..+++|+.|++++|+++
T Consensus 411 ~L~~L~Ls~N~l~~l~~--~~--~~~L~~L~Ls~N~l~~~~-------~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKT--CI--PQTLEVLDVSNNNLDSFS-------LFLPRLQELYISRNKLK 464 (549)
T ss_dssp TCCEEECTTSCCSCCCT--TS--CTTCSEEECCSSCCSCCC-------CCCTTCCEEECCSSCCS
T ss_pred cccEEECCCCCcccccc--hh--cCCceEEECCCCChhhhc-------ccCChhcEEECCCCccC
Confidence 55555555555554443 11 134444444444444332 13444444444444443
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=2.8e-15 Score=143.88 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=115.2
Q ss_pred ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC------------------CCCCCCCCEEEccCCc
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG------------------FPLLKRLSCLFFNNNR 75 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~------------------l~~l~~L~~L~ls~N~ 75 (435)
.+.++++|+.|++++|.++.++. +..+++|+.|++++|.|++++. ...+++|+.|++++|+
T Consensus 53 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~ 131 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131 (317)
T ss_dssp HHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC
T ss_pred HhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCC
Confidence 46678888999999998886655 6678888888888887765431 1234667888888888
Q ss_pred cccccchhhcCCCCCCeeecCCCcCCCCCCCCCC-CCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204 76 IVRIAENLQENLPNLETLILTGNNIQELGDLDPL-STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA 154 (435)
Q Consensus 76 i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l-~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~ 154 (435)
++.+++..++.+++|++|+|++|.++.+... .+ ..+++|+.|+|++|.++.++.. ..+++|+.|++++|+++.
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-----~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CCSGGGBCTGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSSCCCE
T ss_pred CCCccchhhhccCCCCEEECCCCCCCcccHH-HHhhccCcCCEEECCCCcCcccccc-----cccccCCEEECCCCcCCc
Confidence 8887776667888899999999988876542 33 4678899999999988877653 358889999999888865
Q ss_pred Hhh----hhcccEEEEecCCCccccc
Q psy18204 155 LMN----VMFGTEIILSGDSIDAGDQ 176 (435)
Q Consensus 155 l~~----~~~~~~l~lsgn~i~~~~~ 176 (435)
+.. ......+++++|.+...+.
T Consensus 206 l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 206 MGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp ECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred chhhhcccCcccEEECcCCcccchhh
Confidence 532 3344788888888774433
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=1.5e-14 Score=150.56 Aligned_cols=130 Identities=27% Similarity=0.339 Sum_probs=117.5
Q ss_pred cCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 15 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+.++++|+.|+|++|.|..++ .+..+++|+.|+|++|.|+.++.+..+++|+.|+|++|+|+.+ +.+ +.+++|+.|+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l-~~l~~L~~L~ 159 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVL-SRLTKLDTLS 159 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGG-GSCTTCSEEE
T ss_pred hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhh-cccCCCCEEE
Confidence 778999999999999999887 4567999999999999999999899999999999999999998 444 8999999999
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l 155 (435)
|++|+|+.+++ +..+++|+.|+|++|.++.++. +..+++|+.|++++|++...
T Consensus 160 Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~~-----l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 160 LEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG-----GTTCTTCSEEECCSEEEECC
T ss_pred CcCCcCCCchh---hccCCCCCEEECcCCCCCCChH-----HccCCCCCEEEccCCcCcCC
Confidence 99999988763 7889999999999999998854 57899999999999998643
No 85
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.53 E-value=2.8e-14 Score=148.80 Aligned_cols=139 Identities=22% Similarity=0.187 Sum_probs=116.3
Q ss_pred ccccCCCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204 12 CMQYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLP 88 (435)
Q Consensus 12 ~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~ 88 (435)
+..|.++++|++|+|++|.+..+ |..+..+++|++|+|++|.++.+. .|..+++|++|++++|+|+.+++..++.++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 34688999999999999999866 577889999999999999998874 689999999999999999998776678999
Q ss_pred CCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccc--eeeecchhHHH
Q psy18204 89 NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVK--LLDFSKVKLKA 154 (435)
Q Consensus 89 ~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~--~Ldl~~n~l~~ 154 (435)
+|++|++++|+++.++. ..+..+++|+.|++++|.++.++.. .+..+++|+ .|++++|.++.
T Consensus 130 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKE---DMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHH---HHHTTTTCCSEEEECTTCCCCE
T ss_pred cccEEECCCCcccccCc-ccccCCcccCEEEcccCcccccChh---hhhhhcccceeEEecCCCccCc
Confidence 99999999999988753 2555699999999999999876543 456677777 67777776543
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.53 E-value=4.3e-14 Score=149.52 Aligned_cols=155 Identities=22% Similarity=0.230 Sum_probs=123.9
Q ss_pred cCCCCcceEEEecCCCcc---cccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccch-------
Q psy18204 15 YTNPVKDRELDLRGYKIP---VIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAEN------- 82 (435)
Q Consensus 15 ~~~~~~L~~L~L~~n~i~---~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~------- 82 (435)
|.++++|+.|++++|.+. .+|..+..+++|+.|++++|.|+.++ .|..+++|+.|++++|+++.++..
T Consensus 450 ~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 529 (680)
T 1ziw_A 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529 (680)
T ss_dssp TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence 334445555555555443 34566778899999999999999986 489999999999999999987432
Q ss_pred -hhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh----
Q psy18204 83 -LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---- 157 (435)
Q Consensus 83 -~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---- 157 (435)
.++.+++|+.|+|++|+|+.++. ..+..+++|+.|+|++|.++.++.. .+..+++|+.|++++|+++.+..
T Consensus 530 ~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 530 YFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLNTLPAS---VFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred hhhcCCCCCCEEECCCCCCCCCCH-HHcccccCcceeECCCCCCCcCCHh---HhCCCCCCCEEECCCCcCCccChhHhc
Confidence 25889999999999999998885 4789999999999999999998875 45789999999999999876533
Q ss_pred --hhcccEEEEecCCCcc
Q psy18204 158 --VMFGTEIILSGDSIDA 173 (435)
Q Consensus 158 --~~~~~~l~lsgn~i~~ 173 (435)
......+++++|.+..
T Consensus 606 ~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 606 PAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp HHHTTCSEEECTTCCCCB
T ss_pred ccccccCEEEccCCCccc
Confidence 3345788888888753
No 87
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1.8e-14 Score=155.22 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=109.1
Q ss_pred ccCCCCcceEEEecCCCcccccc--cccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCC-C
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIEN--MGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPN-L 90 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~~--~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~-L 90 (435)
.+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|.++.++.|+.+++|+.|+|++|+++.+|..+ ..+++ |
T Consensus 543 ~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l-~~l~~~L 621 (876)
T 4ecn_A 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF-CAFTDQV 621 (876)
T ss_dssp CTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTS-CEECTTC
T ss_pred cccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHH-hhccccC
Confidence 44556688888888888887877 67778888888888888887777788888888888888888776665 67777 8
Q ss_pred CeeecCCCcCCCCCCCCCCCCCC--CCCEEEeecCCcccc-ccchH-HHHhcCCccceeeecchhHHHHhhhh-----cc
Q psy18204 91 ETLILTGNNIQELGDLDPLSTLP--KLKTLCLLHNPVINR-PHYRL-YVAFKLPQVKLLDFSKVKLKALMNVM-----FG 161 (435)
Q Consensus 91 ~~L~Ls~N~i~~l~~~~~l~~l~--~L~~L~L~~N~i~~~-~~~~~-~~~~~l~~L~~Ldl~~n~l~~l~~~~-----~~ 161 (435)
+.|+|++|+|+.++. .+..++ +|+.|+|++|.++.. |.... .....+++|+.|++++|.++.+.... ..
T Consensus 622 ~~L~Ls~N~L~~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L 699 (876)
T 4ecn_A 622 EGLGFSHNKLKYIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699 (876)
T ss_dssp CEEECCSSCCCSCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCC
T ss_pred CEEECcCCCCCcCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCC
Confidence 888888888887764 444443 377777777776532 21100 00113457788888888776554332 34
Q ss_pred cEEEEecCCCcccc
Q psy18204 162 TEIILSGDSIDAGD 175 (435)
Q Consensus 162 ~~l~lsgn~i~~~~ 175 (435)
..+.+++|.+...+
T Consensus 700 ~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 700 STIILSNNLMTSIP 713 (876)
T ss_dssp SEEECCSCCCSCCC
T ss_pred CEEECCCCcCCccC
Confidence 77778777766333
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.53 E-value=3.3e-14 Score=146.47 Aligned_cols=133 Identities=22% Similarity=0.234 Sum_probs=109.4
Q ss_pred CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
++|++|++++|.++.++ ..+..+++|++|++++|.++.++ .|..+++|++|++++|+++.+++..++.+++|++|+|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 58999999999998764 66788999999999999998885 5889999999999999999998886789999999999
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCC-ccccccchHHHHhcCCccceeeecchhHHH
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNP-VINRPHYRLYVAFKLPQVKLLDFSKVKLKA 154 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~ 154 (435)
++|.++.++....+..+++|+.|++++|. +..++.. .+..+++|+.|++++|.++.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTCCE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHh---hhhcccccCeeeccCCcccc
Confidence 99999865433467889999999999988 5566532 34667778888888777654
No 89
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=5.7e-14 Score=122.16 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=95.3
Q ss_pred cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204 20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG 97 (435)
Q Consensus 20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (435)
..+.+++++|.++.+|..+ .++|+.|+|++|.|+.++ .|..+++|++|+|++|+|+.+++..|..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4688999999999999655 378999999999999985 589999999999999999999998889999999999999
Q ss_pred CcCCCCCCCCCCCCCCCCCEEEeecCCccccc
Q psy18204 98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRP 129 (435)
Q Consensus 98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~ 129 (435)
|+|+.++. ..+..+++|+.|+|++|+++...
T Consensus 88 N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPR-GAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCH-HHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999886 46889999999999999987544
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=3.8e-14 Score=146.07 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=91.4
Q ss_pred CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204 19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (435)
++|+.|+|++|.|+.+| ..+++|+.|+|++|.|+.++.++. +|+.|++++|+|+.+|. .+++|+.|+|++|
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCC
Confidence 45666666666666666 235666666666666666655333 66666666666666655 4566777777777
Q ss_pred cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhhh--cc-------cEEEEecC
Q psy18204 99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVM--FG-------TEIILSGD 169 (435)
Q Consensus 99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~--~~-------~~l~lsgn 169 (435)
+|+.++. .+++|+.|+|++|.++.+|.. . ++|+.|++++|+++.+.. . .. ..+++++|
T Consensus 151 ~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~l-----~--~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 151 QLTMLPE-----LPTSLEVLSVRNNQLTFLPEL-----P--ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCREN 217 (571)
T ss_dssp CCSCCCC-----CCTTCCEEECCSSCCSCCCCC-----C--TTCCEEECCSSCCSSCCC-CC--------CCEEEECCSS
T ss_pred ccCcCCC-----cCCCcCEEECCCCCCCCcchh-----h--CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCC
Confidence 7766553 356777777777777776651 1 677777777777765433 1 12 56677777
Q ss_pred CCcccccceeecCCcccccc
Q psy18204 170 SIDAGDQALFIMNHRTRLDW 189 (435)
Q Consensus 170 ~i~~~~~~~~i~nh~~~lD~ 189 (435)
.+...+..+....++..+|.
T Consensus 218 ~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 218 RITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp CCCCCCGGGGGSCTTEEEEC
T ss_pred cceecCHHHhcCCCCCEEEe
Confidence 77655444444444444443
No 91
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=5.3e-14 Score=124.85 Aligned_cols=109 Identities=23% Similarity=0.303 Sum_probs=99.0
Q ss_pred CcceEEEecCCCcccccc--cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 19 VKDRELDLRGYKIPVIEN--MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~--~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
.++++|++++|.|+.++. .+..+++|+.|+|++|.|+++. .|..+++|+.|+|++|+|+.+++..+..+++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 389999999999998874 4788999999999999999984 699999999999999999999988779999999999
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccc
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR 128 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~ 128 (435)
|++|+|+.+.+ ..+..+++|+.|+|++|+++..
T Consensus 109 L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 109 LYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCc
Confidence 99999998764 4788999999999999999843
No 92
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1e-13 Score=121.21 Aligned_cols=110 Identities=23% Similarity=0.415 Sum_probs=99.5
Q ss_pred CCcceEEEecCCCcccccc-cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 18 PVKDRELDLRGYKIPVIEN-MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+++|+.|++++|.++.++. .+..+++|+.|++++|.|+.++ .|..+++|+.|++++|+|+.+++..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 4689999999999998874 5678999999999999999987 378999999999999999999988889999999999
Q ss_pred cCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccc
Q psy18204 95 LTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR 128 (435)
Q Consensus 95 Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~ 128 (435)
|++|+|+.++. ..+..+++|+.|+|++|+++..
T Consensus 107 l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 107 LDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCcceEeCH-HHhcCCcccCEEEecCCCeecc
Confidence 99999998886 4678899999999999998753
No 93
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.51 E-value=2.8e-14 Score=153.12 Aligned_cols=90 Identities=18% Similarity=0.029 Sum_probs=62.6
Q ss_pred ccccCCCCcceEEEecCCCcc-cccccccCCCCCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204 12 CMQYTNPVKDRELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIVRIAENLQENLP 88 (435)
Q Consensus 12 ~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~ 88 (435)
+..+.++++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++. + .++.+++|+.|++++|+++...+..++.++
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 345666777788888888777 5666677777788888888777743 4 567777777777777777743333336777
Q ss_pred CCCeeecCCCcCC
Q psy18204 89 NLETLILTGNNIQ 101 (435)
Q Consensus 89 ~L~~L~Ls~N~i~ 101 (435)
+|+.|++++|+++
T Consensus 539 ~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 539 SLIWLDLNTNLFN 551 (768)
T ss_dssp TCCEEECCSSEEE
T ss_pred CCCEEECCCCccC
Confidence 7777777777664
No 94
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=1e-13 Score=121.09 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=94.8
Q ss_pred ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204 21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98 (435)
Q Consensus 21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (435)
.+.+++++|.++.+|..+ .++|+.|+|++|.|++++ .|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 478999999999998755 378999999999999985 5899999999999999999999988889999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCEEEeecCCcccccc
Q psy18204 99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPH 130 (435)
Q Consensus 99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~ 130 (435)
+|+.++. ..+..+++|+.|+|++|++...+.
T Consensus 92 ~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 9998886 358889999999999999886543
No 95
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.50 E-value=8.2e-14 Score=140.81 Aligned_cols=149 Identities=28% Similarity=0.310 Sum_probs=89.1
Q ss_pred ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL 93 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L 93 (435)
.+.++++|+.|++++|.++.++. +..+++|+.|++++|.++.+..++.+++|+.|++++|+++.++ . +..+++|+.|
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L 248 (466)
T 1o6v_A 172 PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-T-LASLTNLTDL 248 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-G-GGGCTTCSEE
T ss_pred hhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-h-hhcCCCCCEE
Confidence 36667777777777777776654 3456677777777777766655556666666666666666652 2 2556666666
Q ss_pred ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCC
Q psy18204 94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDS 170 (435)
Q Consensus 94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~ 170 (435)
++++|.++.++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|+++.+.. ......+++++|.
T Consensus 249 ~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 249 DLANNQISNLA---PLSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp ECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred ECCCCccccch---hhhcCCCCCEEECCCCccCcccc-----ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc
Confidence 66666665544 24556666666666666655543 2455566666666665543322 2223555555555
Q ss_pred Ccc
Q psy18204 171 IDA 173 (435)
Q Consensus 171 i~~ 173 (435)
+..
T Consensus 321 l~~ 323 (466)
T 1o6v_A 321 ISD 323 (466)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 96
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=8.8e-15 Score=155.73 Aligned_cols=114 Identities=23% Similarity=0.287 Sum_probs=90.5
Q ss_pred cccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCC
Q psy18204 35 ENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLP 113 (435)
Q Consensus 35 ~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~ 113 (435)
+..+..+.+|+.|+|++|.|..++ .+..+++|+.|+|++|.|+.+|..+ +.+++|+.|+|++|+|+.++. .+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~--~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPA--ELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCS--SGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccCh--hhcCCC
Confidence 455667888888999988888886 5668888888999999888887666 788889999999998888765 678888
Q ss_pred CCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204 114 KLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155 (435)
Q Consensus 114 ~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l 155 (435)
+|+.|+|++|.|+.+|.. +..+++|+.|++++|.++..
T Consensus 294 ~L~~L~L~~N~l~~lp~~----~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWE----FGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TCSEEECCSSCCCCCCSS----TTSCTTCCCEECTTSCCCSH
T ss_pred CCCEEECCCCCCCccChh----hhcCCCccEEeCCCCccCCC
Confidence 888999988888888763 57888888889888887643
No 97
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.50 E-value=4e-14 Score=144.92 Aligned_cols=146 Identities=18% Similarity=0.260 Sum_probs=85.8
Q ss_pred cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccccccc--hhhcCCCCCCeeec
Q psy18204 20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIVRIAE--NLQENLPNLETLIL 95 (435)
Q Consensus 20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~~--~~~~~l~~L~~L~L 95 (435)
+|+.|++++|.+..++. ...+++|+.|++++|.+++. + .+..+++|+.|++++|+++.++. ..++.+++|++|++
T Consensus 303 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred ceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 56667777766654432 13566677777777776652 2 56666677777777777765432 33466677777777
Q ss_pred CCCcCCC-CCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcC-CccceeeecchhHHHHhhh----hcccEEEEecC
Q psy18204 96 TGNNIQE-LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL-PQVKLLDFSKVKLKALMNV----MFGTEIILSGD 169 (435)
Q Consensus 96 s~N~i~~-l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l-~~L~~Ldl~~n~l~~l~~~----~~~~~l~lsgn 169 (435)
++|.++. ++. ..+..+++|+.|++++|.++.... ..+ ++|+.|++++|+++.+... .....+++++|
T Consensus 382 s~N~l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~------~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 382 SQNSVSYDEKK-GDCSWTKSLLSLNMSSNILTDTIF------RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CSSCCBCCGGG-CSCCCCTTCCEEECCSSCCCGGGG------GSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCcCCccccc-chhccCccCCEEECcCCCCCcchh------hhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence 7777665 543 245566666777777666653211 112 5666666666666544332 23366666666
Q ss_pred CCcc
Q psy18204 170 SIDA 173 (435)
Q Consensus 170 ~i~~ 173 (435)
.+..
T Consensus 455 ~l~~ 458 (520)
T 2z7x_B 455 QLKS 458 (520)
T ss_dssp CCCC
T ss_pred cCCc
Confidence 6653
No 98
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.49 E-value=4.7e-14 Score=148.17 Aligned_cols=135 Identities=21% Similarity=0.262 Sum_probs=69.9
Q ss_pred cCCCCc-ceEEEecCCCcccccccccCCC--CCCEEEccCCCCCCc-C-CCC-------CCCCCCEEEccCCccccccch
Q psy18204 15 YTNPVK-DRELDLRGYKIPVIENMGATLD--QFDTIDFSNNDIRKI-D-GFP-------LLKRLSCLFFNNNRIVRIAEN 82 (435)
Q Consensus 15 ~~~~~~-L~~L~L~~n~i~~i~~~~~~l~--~L~~L~Ls~N~l~~l-~-~l~-------~l~~L~~L~ls~N~i~~i~~~ 82 (435)
+.++++ |+.|++++|.++.+|..+..+. +|+.|++++|.+++. + .++ .+++|+.|++++|+|+.+|..
T Consensus 372 l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 451 (636)
T 4eco_A 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451 (636)
T ss_dssp SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH
T ss_pred hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH
Confidence 444444 5555555555555554433322 455555555555443 1 233 445556666666666665555
Q ss_pred hhcCCCCCCeeecCCCcCCCCCCCCCCCC-------CCCCCEEEeecCCccccccchHHHHh--cCCccceeeecchhHH
Q psy18204 83 LQENLPNLETLILTGNNIQELGDLDPLST-------LPKLKTLCLLHNPVINRPHYRLYVAF--KLPQVKLLDFSKVKLK 153 (435)
Q Consensus 83 ~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~-------l~~L~~L~L~~N~i~~~~~~~~~~~~--~l~~L~~Ldl~~n~l~ 153 (435)
++..+++|+.|+|++|+|+.++. ..+.. +++|+.|+|++|.++.+|.. +. .+++|+.|++++|+++
T Consensus 452 ~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~~~~~l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 452 LFSTGSPLSSINLMGNMLTEIPK-NSLKDENENFKNTYLLTSIDLRFNKLTKLSDD----FRATTLPYLVGIDLSYNSFS 526 (636)
T ss_dssp HHHTTCCCSEEECCSSCCSBCCS-SSSEETTEECTTGGGCCEEECCSSCCCBCCGG----GSTTTCTTCCEEECCSSCCS
T ss_pred HHccCCCCCEEECCCCCCCCcCH-HHhccccccccccCCccEEECcCCcCCccChh----hhhccCCCcCEEECCCCCCC
Confidence 55555666666666666655543 12221 12566666666666555542 22 5556666666666554
Q ss_pred H
Q psy18204 154 A 154 (435)
Q Consensus 154 ~ 154 (435)
.
T Consensus 527 ~ 527 (636)
T 4eco_A 527 K 527 (636)
T ss_dssp S
T ss_pred C
Confidence 4
No 99
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=145.76 Aligned_cols=154 Identities=21% Similarity=0.178 Sum_probs=126.9
Q ss_pred cccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCC
Q psy18204 13 MQYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPN 89 (435)
Q Consensus 13 ~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~ 89 (435)
..|.++++|+.|++++|.++.++ ..+..+++|++|+|++|.++.++ .|..+++|++|++++|+++.+++..++.+++
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 36788999999999999999876 66888999999999999999885 6999999999999999999998765689999
Q ss_pred CCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCcc----ceeeecchhHHHHhhhh----cc
Q psy18204 90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQV----KLLDFSKVKLKALMNVM----FG 161 (435)
Q Consensus 90 L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L----~~Ldl~~n~l~~l~~~~----~~ 161 (435)
|++|++++|.++.+.....+.++++|+.|++++|.++.++... +..+++| ..|++++|.++.+.... ..
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L 202 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD---LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG---GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH---ccchhccchhhhhcccCCCCceecCHHHhccCcc
Confidence 9999999999987432237889999999999999999876543 3445555 78999999886553322 23
Q ss_pred cEEEEecC
Q psy18204 162 TEIILSGD 169 (435)
Q Consensus 162 ~~l~lsgn 169 (435)
..+.+++|
T Consensus 203 ~~L~l~~n 210 (570)
T 2z63_A 203 HKLTLRNN 210 (570)
T ss_dssp EEEEEESC
T ss_pred eeEecccc
Confidence 56666665
No 100
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=1.6e-14 Score=155.78 Aligned_cols=158 Identities=14% Similarity=0.101 Sum_probs=117.0
Q ss_pred cccccCCCCcceEEEecCCCccc------------------cccccc--CCCCCCEEEccCCCCCC-cC-CCCCCCCCCE
Q psy18204 11 QCMQYTNPVKDRELDLRGYKIPV------------------IENMGA--TLDQFDTIDFSNNDIRK-ID-GFPLLKRLSC 68 (435)
Q Consensus 11 ~~~~~~~~~~L~~L~L~~n~i~~------------------i~~~~~--~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 68 (435)
.|..+.++++|+.|+|++|.++. +|..++ .+++|+.|+|++|.+.+ +| .|..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 35568888889999999998887 887766 88889999998888654 45 5788888888
Q ss_pred EEccCCc-ccc--ccchh------hcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcC
Q psy18204 69 LFFNNNR-IVR--IAENL------QENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL 139 (435)
Q Consensus 69 L~ls~N~-i~~--i~~~~------~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l 139 (435)
|+|++|+ ++. +|..+ +..+++|+.|+|++|+++.++....+..+++|+.|+|++|.++.+|. +..+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~-----~~~L 594 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-----FGTN 594 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCC-----CCTT
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchh-----hcCC
Confidence 8888887 775 66543 12445888888888888866531246778888888888888887773 4678
Q ss_pred CccceeeecchhHHHHhh----hhc-ccEEEEecCCCcc
Q psy18204 140 PQVKLLDFSKVKLKALMN----VMF-GTEIILSGDSIDA 173 (435)
Q Consensus 140 ~~L~~Ldl~~n~l~~l~~----~~~-~~~l~lsgn~i~~ 173 (435)
++|+.|++++|.++.+.. ... ...+.+++|.+..
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~ 633 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc
Confidence 888888888888764432 223 5677788877763
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.49 E-value=1.4e-13 Score=142.40 Aligned_cols=146 Identities=20% Similarity=0.207 Sum_probs=119.1
Q ss_pred CCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
+...+.+++++|+++.+|..+ .++|+.|+|++|.|+.++ .|..+++|++|++++|+|+.+++..|+.+++|++|+|
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCCCCccCCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 445588999999999998654 378999999999999886 6899999999999999999998877789999999999
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH--hhhhcc--cEEEEecCCC
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL--MNVMFG--TEIILSGDSI 171 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l--~~~~~~--~~l~lsgn~i 171 (435)
++|+|+.++. . .+++|++|+|++|.++.++... .+..+++|+.|++++|.++.. ...... ..+.+++|.+
T Consensus 108 s~N~l~~lp~--~--~l~~L~~L~Ls~N~l~~l~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQNISC--C--PMASLRHLDLSFNDFDVLPVCK--EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCCEECS--C--CCTTCSEEECCSSCCSBCCCCG--GGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred CCCcCCccCc--c--ccccCCEEECCCCCccccCchH--hhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 9999998875 2 7899999999999998765211 367899999999999988642 223333 7888888877
No 102
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.49 E-value=6.8e-14 Score=141.07 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=82.8
Q ss_pred ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCee
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETL 93 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L 93 (435)
.+.++++|+.|++++|.++.+| .+..+++|+.|++++|.|++++ ++.+++|++|++++|.|+.++ ++.+++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEE
Confidence 4455677777888877777776 3456777777777777777765 677777777777777777763 3677777777
Q ss_pred ecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecch
Q psy18204 94 ILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKV 150 (435)
Q Consensus 94 ~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n 150 (435)
++++|+++.++ +..+++|+.|++++|.++.++ +..+++|+.|++++|
T Consensus 112 ~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~------l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 112 NCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLN 158 (457)
T ss_dssp ECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC------CTTCTTCCEEECTTC
T ss_pred ECCCCcCCeec----CCCCCcCCEEECCCCccceec------cccCCcCCEEECCCC
Confidence 77777776643 466777777777777776653 134445555555544
No 103
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.49 E-value=1.9e-14 Score=151.27 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=107.2
Q ss_pred CCCCcceEEEecCCCcccccc--cccCCCCCCEEEccCCCCC-CcCCCCCCCCCCEEEccCCccccccchhhcCCCC-CC
Q psy18204 16 TNPVKDRELDLRGYKIPVIEN--MGATLDQFDTIDFSNNDIR-KIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPN-LE 91 (435)
Q Consensus 16 ~~~~~L~~L~L~~n~i~~i~~--~~~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~-L~ 91 (435)
..+++|+.|++++|.++.+|. .+..+++|+.|++++|.++ .++.+..+++|+.|++++|+++.+|..+ ..+++ |+
T Consensus 302 ~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l-~~l~~~L~ 380 (636)
T 4eco_A 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANF-CGFTEQVE 380 (636)
T ss_dssp GGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTS-EEECTTCC
T ss_pred ccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhh-hhhcccCc
Confidence 344788888888888888887 7778888888888888888 6777777888888888888888877665 67777 88
Q ss_pred eeecCCCcCCCCCCCCCCCCC--CCCCEEEeecCCccccccchHHHHh-------cCCccceeeecchhHHHHhhh----
Q psy18204 92 TLILTGNNIQELGDLDPLSTL--PKLKTLCLLHNPVINRPHYRLYVAF-------KLPQVKLLDFSKVKLKALMNV---- 158 (435)
Q Consensus 92 ~L~Ls~N~i~~l~~~~~l~~l--~~L~~L~L~~N~i~~~~~~~~~~~~-------~l~~L~~Ldl~~n~l~~l~~~---- 158 (435)
+|++++|.++.++. .+..+ ++|+.|++++|.++..... .+. .+++|+.|++++|+++.+...
T Consensus 381 ~L~Ls~N~l~~lp~--~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~ 455 (636)
T 4eco_A 381 NLSFAHNKLKYIPN--IFDAKSVSVMSAIDFSYNEIGSVDGK---NFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455 (636)
T ss_dssp EEECCSSCCSSCCS--CCCTTCSSCEEEEECCSSCTTTTTTC---SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHT
T ss_pred EEEccCCcCcccch--hhhhcccCccCEEECcCCcCCCcchh---hhcccccccccCCCCCEEECcCCccCcCCHHHHcc
Confidence 88888888887765 34433 3677777777777643211 112 455677777777776544322
Q ss_pred -hcccEEEEecCCCcc
Q psy18204 159 -MFGTEIILSGDSIDA 173 (435)
Q Consensus 159 -~~~~~l~lsgn~i~~ 173 (435)
.....+.+++|.+..
T Consensus 456 l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 456 GSPLSSINLMGNMLTE 471 (636)
T ss_dssp TCCCSEEECCSSCCSB
T ss_pred CCCCCEEECCCCCCCC
Confidence 233667777766653
No 104
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.49 E-value=1.2e-13 Score=139.53 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=114.1
Q ss_pred cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204 13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET 92 (435)
Q Consensus 13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~ 92 (435)
..+.++++|+.|++++|.+..++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.+++ +..+++|+.
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 269 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence 346677888888888888887655 45578888888888888888777788888888888888887755 477888888
Q ss_pred eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHh---hhhcccEEEEecC
Q psy18204 93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALM---NVMFGTEIILSGD 169 (435)
Q Consensus 93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~---~~~~~~~l~lsgn 169 (435)
|++++|.++.++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.++... .......+.+++|
T Consensus 270 L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 270 LKLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp EECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence 8888888877653 6678888888888888877654 467788888888888776543 2333477777777
Q ss_pred CCccc
Q psy18204 170 SIDAG 174 (435)
Q Consensus 170 ~i~~~ 174 (435)
.+...
T Consensus 342 ~l~~~ 346 (466)
T 1o6v_A 342 KVSDV 346 (466)
T ss_dssp CCCCC
T ss_pred ccCCc
Confidence 76644
No 105
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.49 E-value=1.5e-13 Score=138.56 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=99.3
Q ss_pred cccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204 13 MQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET 92 (435)
Q Consensus 13 ~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~ 92 (435)
+.+.++++|+.|++++|.++.++ ++.+++|+.|++++|.|++++ ++.+++|++|++++|+++.++ ++.+++|++
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~ 131 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTY 131 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCCE
T ss_pred hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCCCcCCE
Confidence 35777888999999999988876 667888999999999888875 788888899999988888874 478888888
Q ss_pred eecCCCcCCCCCCCC-------------------CCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 93 LILTGNNIQELGDLD-------------------PLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 93 L~Ls~N~i~~l~~~~-------------------~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
|++++|+++.++ +. .+..+++|+.|++++|.++.++ +..+++|+.|++++|.++
T Consensus 132 L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~------l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 132 LNCARNTLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD------VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp EECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC------CTTCTTCCEEECCSSCCS
T ss_pred EECCCCccceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec------cccCCCCCEEECcCCcCC
Confidence 888888887753 10 1233444445555555544443 134555555555555554
Q ss_pred HH--hhhhcccEEEEecCCCcc
Q psy18204 154 AL--MNVMFGTEIILSGDSIDA 173 (435)
Q Consensus 154 ~l--~~~~~~~~l~lsgn~i~~ 173 (435)
.+ ........+++++|.+..
T Consensus 205 ~~~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 205 KLDLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CCCCTTCTTCSEEECCSSCCSC
T ss_pred eeccccCCCCCEEECcCCcccc
Confidence 33 112223555666655544
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=1.4e-13 Score=141.84 Aligned_cols=142 Identities=17% Similarity=0.199 Sum_probs=92.6
Q ss_pred CCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204 17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT 96 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls 96 (435)
.+++|+.|++++|.|+.+|. +.. +|+.|+|++|.|+.++. .+++|+.|++++|.|+.+|. .+++|+.|+|+
T Consensus 98 ~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls 168 (571)
T 3cvr_A 98 LPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE----LPTSLEVLSVR 168 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC----CCTTCCEEECC
T ss_pred ccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC----cCCCcCEEECC
Confidence 46788888888888888777 433 78888888888877766 56777888888888777765 45677777777
Q ss_pred CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh----hcccEEEEecCCCc
Q psy18204 97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV----MFGTEIILSGDSID 172 (435)
Q Consensus 97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~----~~~~~l~lsgn~i~ 172 (435)
+|+|+.++. +. ++|+.|+|++|.|+.+|.....+....+.|+.|++++|+++.+... .....+++++|.+.
T Consensus 169 ~N~L~~lp~---l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 169 NNQLTFLPE---LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SSCCSCCCC---CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred CCCCCCcch---hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 777777664 22 6777777777777766652110111122337777777776654332 23366777777665
No 107
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.48 E-value=9.5e-14 Score=143.68 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=66.3
Q ss_pred cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccccccc--hhhcCCCCCCeeec
Q psy18204 20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIVRIAE--NLQENLPNLETLIL 95 (435)
Q Consensus 20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~~--~~~~~l~~L~~L~L 95 (435)
+|+.|++++|.+..++. ...+++|+.|++++|.+++. + .+..+++|+.|++++|+++.++. ..++.+++|++|++
T Consensus 332 ~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred cceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 45555555555443321 12344555555555555442 1 34555555555555555554432 22345555555555
Q ss_pred CCCcCCC-CCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcC-CccceeeecchhHHHHhhhh----cccEEEEecC
Q psy18204 96 TGNNIQE-LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL-PQVKLLDFSKVKLKALMNVM----FGTEIILSGD 169 (435)
Q Consensus 96 s~N~i~~-l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l-~~L~~Ldl~~n~l~~l~~~~----~~~~l~lsgn 169 (435)
++|+++. ++. ..+..+++|+.|++++|.++.... ..+ ++|+.|++++|+++.+.... ....+++++|
T Consensus 411 ~~N~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~------~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 411 SLNSLNSHAYD-RTCAWAESILVLNLSSNMLTGSVF------RCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp TTSCCBSCCSS-CCCCCCTTCCEEECCSSCCCGGGG------SSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS
T ss_pred CCCcCCCccCh-hhhcCcccCCEEECCCCCCCcchh------hhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCC
Confidence 5555544 332 234445555555555555442111 112 34555555555544332221 2244555555
Q ss_pred CCc
Q psy18204 170 SID 172 (435)
Q Consensus 170 ~i~ 172 (435)
.+.
T Consensus 484 ~l~ 486 (562)
T 3a79_B 484 QLK 486 (562)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 108
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=141.27 Aligned_cols=105 Identities=23% Similarity=0.240 Sum_probs=49.7
Q ss_pred CcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
++|++|++++|.++.++ ..+..+++|++|+|++|.|+++. .|..+++|++|++++|+|+.+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEec
Confidence 34555555555554443 33444455555555555554441 344455555555555555544433 4455555555
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecCCcc
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~ 126 (435)
++|+++.++....++.+++|++|++++|.++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccc
Confidence 5555544321124444555555555555544
No 109
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.7e-16 Score=141.68 Aligned_cols=130 Identities=22% Similarity=0.257 Sum_probs=96.7
Q ss_pred cceEEEecCC--CcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204 20 KDRELDLRGY--KIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG 97 (435)
Q Consensus 20 ~L~~L~L~~n--~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (435)
.++.+.+.++ .++.+|..+..+++|+.|++++|.|+.++.+..+++|+.|++++|.|+.++... ..+++|++|+|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcC
Confidence 3444555443 344555567778888888888888888887777888888888888888886544 6678888888888
Q ss_pred CcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204 98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155 (435)
Q Consensus 98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l 155 (435)
|+|+.++ .+..+++|+.|++++|.++.++.. ..+..+++|+.|++++|.+...
T Consensus 103 N~l~~l~---~~~~l~~L~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 103 NQIASLS---GIEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EECCCHH---HHHHHHHSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCcCC---ccccCCCCCEEECCCCcCCchhHH--HHHhcCCCCCEEEecCCccccc
Confidence 8888765 466778888888888888876542 2457788888888888888654
No 110
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.46 E-value=2e-13 Score=146.44 Aligned_cols=178 Identities=19% Similarity=0.118 Sum_probs=135.8
Q ss_pred ccccCCCCcceEEEecCCCcc-cccccccCCCCCCEEEccCCCCCCc-C-CCCCCCCCCEEEccCCccccccchhhcCCC
Q psy18204 12 CMQYTNPVKDRELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKI-D-GFPLLKRLSCLFFNNNRIVRIAENLQENLP 88 (435)
Q Consensus 12 ~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~ 88 (435)
+..+.++++|+.|++++|.+. .+|..+..+++|+.|++++|.+++. + .+..+++|+.|++++|+++...+..++.++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 456778899999999999998 7888888899999999999999854 4 688999999999999999955455558999
Q ss_pred CCCeeecCCCcCC-CCCCCCCCCCCCCCCEEEeecCCcc-ccccchHH--------------------------------
Q psy18204 89 NLETLILTGNNIQ-ELGDLDPLSTLPKLKTLCLLHNPVI-NRPHYRLY-------------------------------- 134 (435)
Q Consensus 89 ~L~~L~Ls~N~i~-~l~~~~~l~~l~~L~~L~L~~N~i~-~~~~~~~~-------------------------------- 134 (435)
+|+.|+|++|+++ .++. .+..+++|+.|++++|+++ .+|.....
T Consensus 515 ~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp TCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 9999999999997 4443 7888999999999999887 44432100
Q ss_pred ----------------------------------HHhcCCccceeeecchhHHH-----HhhhhcccEEEEecCCCccc-
Q psy18204 135 ----------------------------------VAFKLPQVKLLDFSKVKLKA-----LMNVMFGTEIILSGDSIDAG- 174 (435)
Q Consensus 135 ----------------------------------~~~~l~~L~~Ldl~~n~l~~-----l~~~~~~~~l~lsgn~i~~~- 174 (435)
.+..+++|+.||+++|+++. +........+++++|.+.+.
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 12235778899999998863 23344457888888888743
Q ss_pred ccceeecCCccccccch
Q psy18204 175 DQALFIMNHRTRLDWNF 191 (435)
Q Consensus 175 ~~~~~i~nh~~~lD~l~ 191 (435)
+..+.-...+..+|...
T Consensus 673 p~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSS 689 (768)
T ss_dssp CGGGGGCTTCCEEECCS
T ss_pred ChHHhCCCCCCEEECCC
Confidence 33444455555555443
No 111
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.45 E-value=3.2e-13 Score=146.40 Aligned_cols=154 Identities=19% Similarity=0.100 Sum_probs=119.6
Q ss_pred CCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCC-CCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204 17 NPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNND-IRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLET 92 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~ 92 (435)
-+++++.|+|++|.|+.+ +..+..+++|+.|+|++|. +..++ .|.++++|++|+|++|+|+.+++..++++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 467899999999999866 4678889999999999994 44553 6899999999999999999887777799999999
Q ss_pred eecCCCcCCC-CCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH-----hhh--hcccEE
Q psy18204 93 LILTGNNIQE-LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL-----MNV--MFGTEI 164 (435)
Q Consensus 93 L~Ls~N~i~~-l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l-----~~~--~~~~~l 164 (435)
|+|++|.+++ ++.-..+..+++|+.|+|++|.++.++... .+..+++|+.|++++|.++.. ... .....+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP--SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG--GGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch--hHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 9999999976 333234888999999999999998664311 357899999999999987542 111 334566
Q ss_pred EEecCCCc
Q psy18204 165 ILSGDSID 172 (435)
Q Consensus 165 ~lsgn~i~ 172 (435)
.+++|.+.
T Consensus 180 ~L~~n~l~ 187 (844)
T 3j0a_A 180 SLAANSLY 187 (844)
T ss_dssp EECCSBSC
T ss_pred ECCCCccc
Confidence 66666554
No 112
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.45 E-value=3.4e-13 Score=146.23 Aligned_cols=90 Identities=22% Similarity=0.263 Sum_probs=61.9
Q ss_pred ccCCCCcceEEEecCCCcccc-cccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL 90 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L 90 (435)
.|.++++|+.|+|++|.++.+ +..+..+++|+.|+|++|.++.+. .|..+++|+.|++++|.|+.+++..|..+++|
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence 455667777777777777654 345666777777777777776663 56677777777777777777766666667777
Q ss_pred CeeecCCCcCCCC
Q psy18204 91 ETLILTGNNIQEL 103 (435)
Q Consensus 91 ~~L~Ls~N~i~~l 103 (435)
++|+|++|.++.+
T Consensus 365 ~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 365 QTLDLRDNALTTI 377 (844)
T ss_dssp CEEEEETCCSCCC
T ss_pred CEEECCCCCCCcc
Confidence 7777777766543
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=2.3e-14 Score=152.53 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=102.2
Q ss_pred ccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL 90 (435)
Q Consensus 12 ~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L 90 (435)
+..+.++.+|+.|+|++|.+..++..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|+|+.+|..+ +.|++|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L 295 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL-GSCFQL 295 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG-GGGTTC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh-cCCCCC
Confidence 44678889999999999999999976668999999999999999887 6899999999999999999997776 899999
Q ss_pred CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccccc
Q psy18204 91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH 130 (435)
Q Consensus 91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~ 130 (435)
++|+|++|.|+.++. .+..+++|+.|+|++|+++..+.
T Consensus 296 ~~L~L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SEEECCSSCCCCCCS--STTSCTTCCCEECTTSCCCSHHH
T ss_pred CEEECCCCCCCccCh--hhhcCCCccEEeCCCCccCCCCh
Confidence 999999999999986 69999999999999999985443
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=8.7e-14 Score=120.47 Aligned_cols=118 Identities=20% Similarity=0.192 Sum_probs=101.5
Q ss_pred ccccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCC-cCC-CCCCCCCCEEEccCCccccccc-hhhcCCC
Q psy18204 12 CMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK-IDG-FPLLKRLSCLFFNNNRIVRIAE-NLQENLP 88 (435)
Q Consensus 12 ~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~-l~~-l~~l~~L~~L~ls~N~i~~i~~-~~~~~l~ 88 (435)
+..+.++++|+.|++++|.++.+ ..+..+++|+.|++++|.++. ++. +..+++|+.|++++|.|+.++. ..+..++
T Consensus 42 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 42 EGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120 (168)
T ss_dssp SSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred HHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence 33457788999999999999988 667789999999999999998 553 4569999999999999999863 4558999
Q ss_pred CCCeeecCCCcCCCCCCC--CCCCCCCCCCEEEeecCCcccccc
Q psy18204 89 NLETLILTGNNIQELGDL--DPLSTLPKLKTLCLLHNPVINRPH 130 (435)
Q Consensus 89 ~L~~L~Ls~N~i~~l~~~--~~l~~l~~L~~L~L~~N~i~~~~~ 130 (435)
+|+.|++++|.++.++.. ..+..+++|+.|++++|.+..+|.
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 999999999999988741 257889999999999999988775
No 115
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=4e-13 Score=116.77 Aligned_cols=105 Identities=20% Similarity=0.292 Sum_probs=93.9
Q ss_pred CCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEee
Q psy18204 43 QFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLL 121 (435)
Q Consensus 43 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~ 121 (435)
..+.|++++|.++.++ .+. ++|+.|+|++|+|+.+++..|..+++|++|+|++|+|+.++. ..+..+++|+.|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECC
Confidence 3579999999999998 453 789999999999999988878999999999999999999886 467899999999999
Q ss_pred cCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 122 HNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 122 ~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
+|.++.++.. .+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRG---AFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTT---TTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHH---HhcCCCCCCEEEeCCCCCC
Confidence 9999988874 3578999999999999775
No 116
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=5.6e-13 Score=116.33 Aligned_cols=104 Identities=19% Similarity=0.297 Sum_probs=93.4
Q ss_pred CCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeec
Q psy18204 44 FDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122 (435)
Q Consensus 44 L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~ 122 (435)
-+.+++++|.++.+| .+. ++|+.|+|++|+|+.+++..++.+++|+.|+|++|+|+.++. ..+..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCC
Confidence 478999999999998 454 889999999999999988888999999999999999999886 3678999999999999
Q ss_pred CCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 123 NPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 123 N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
|.|+.++.. .+..+++|+.|++++|.+.
T Consensus 91 N~l~~l~~~---~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRG---AFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTT---TTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHH---HhccccCCCEEEeCCCCcc
Confidence 999988874 3578999999999999876
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.42 E-value=7.6e-13 Score=133.28 Aligned_cols=140 Identities=18% Similarity=0.225 Sum_probs=94.7
Q ss_pred CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204 19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (435)
++|++|++++|.++.+|. ++.+++|+.|++++|.+++++.. ..+|++|++++|+++.++ . ++.+++|+.|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcc-cCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-c-ccCCCCCCEEECCCC
Confidence 577888888888877773 66778888888888888776643 247788888888877775 3 367777777777777
Q ss_pred cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-hcccEEEEecCCCcc
Q psy18204 99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-MFGTEIILSGDSIDA 173 (435)
Q Consensus 99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-~~~~~l~lsgn~i~~ 173 (435)
+++.++.. .++|+.|++++|.++.+|. +..+++|+.|++++|+++.+... .....+++++|.+..
T Consensus 206 ~l~~l~~~-----~~~L~~L~l~~n~l~~lp~-----~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 206 SLKKLPDL-----PLSLESIVAGNNILEELPE-----LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD 271 (454)
T ss_dssp CCSSCCCC-----CTTCCEEECCSSCCSSCCC-----CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC
T ss_pred cCCcCCCC-----cCcccEEECcCCcCCcccc-----cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc
Confidence 77766542 2467777777777776664 35667777777777766654322 233566666666553
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=2e-12 Score=134.73 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=33.2
Q ss_pred CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCcccccc
Q psy18204 19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~ 80 (435)
++|+.|++++|.|+.+|. .+++|+.|+|++|.|+.++. .+++|+.|++++|.|+.++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCC
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCC
Confidence 456666666666666655 34566666666666665554 4455555555555555544
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=8.3e-14 Score=143.96 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=108.0
Q ss_pred cCCCCcceEEE-ecCCCcccccc------ccc--CCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhc
Q psy18204 15 YTNPVKDRELD-LRGYKIPVIEN------MGA--TLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQE 85 (435)
Q Consensus 15 ~~~~~~L~~L~-L~~n~i~~i~~------~~~--~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~ 85 (435)
+.++++|+.|+ ++.|.+..++. .+. ....|+.|+|++|.|++++.++.+++|+.|+|++|+|+.+|..+ +
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~-~ 483 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL-A 483 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGG-G
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhh-h
Confidence 34455666666 45554433321 000 12358999999999999999999999999999999999998766 8
Q ss_pred CCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccc--ccchHHHHhcCCccceeeecchhHHHH
Q psy18204 86 NLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR--PHYRLYVAFKLPQVKLLDFSKVKLKAL 155 (435)
Q Consensus 86 ~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~--~~~~~~~~~~l~~L~~Ldl~~n~l~~l 155 (435)
.+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.++.+ |. .+..+++|+.|++++|+++..
T Consensus 484 ~l~~L~~L~Ls~N~l~~lp---~l~~l~~L~~L~Ls~N~l~~~~~p~----~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 484 ALRCLEVLQASDNALENVD---GVANLPRLQELLLCNNRLQQSAAIQ----PLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp GCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECCSSCCCSSSTTG----GGGGCTTCCEEECTTSGGGGS
T ss_pred cCCCCCEEECCCCCCCCCc---ccCCCCCCcEEECCCCCCCCCCCcH----HHhcCCCCCEEEecCCcCCCC
Confidence 9999999999999999876 678999999999999999988 55 468999999999999999843
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.38 E-value=2e-12 Score=130.24 Aligned_cols=138 Identities=18% Similarity=0.250 Sum_probs=100.4
Q ss_pred CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCC
Q psy18204 19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (435)
.+|+.|++++|.++.++.. .++|++|++++|.+++++.++.+++|++|++++|+++.+|.. .++|++|++++|
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC
Confidence 3455555555555544432 257888888888888888888888888888888888887643 358888888888
Q ss_pred cCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhh---hhcccEEEEecCCCcc
Q psy18204 99 NIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN---VMFGTEIILSGDSIDA 173 (435)
Q Consensus 99 ~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~---~~~~~~l~lsgn~i~~ 173 (435)
+++.++ .+..+++|+.|++++|.++.+|.. .++|+.|++++|.++.+.. ......+.+++|.+..
T Consensus 184 ~l~~l~---~~~~l~~L~~L~l~~N~l~~l~~~-------~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 184 QLEELP---ELQNLPFLTAIYADNNSLKKLPDL-------PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCSSCC---CCTTCTTCCEEECCSSCCSSCCCC-------CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred cCCcCc---cccCCCCCCEEECCCCcCCcCCCC-------cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc
Confidence 888765 467888888888888888877652 3578888888888765432 2334788888887764
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=3.8e-13 Score=117.47 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=97.1
Q ss_pred ccCCCCCCEEEccCCCCCCcCCCCCCC-CCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCC
Q psy18204 38 GATLDQFDTIDFSNNDIRKIDGFPLLK-RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLK 116 (435)
Q Consensus 38 ~~~l~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~ 116 (435)
+..+.+|+.|++++|.++.++.+..+. +|+.|++++|.|+.+ +.+ +.+++|++|+|++|+|+.++. ..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGF-PLLRRLKTLLVNNNRICRIGE-GLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCC-CCCSSCCEEECCSSCCCEECS-CHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-ccc-ccCCCCCEEECCCCcccccCc-chhhcCCCCC
Confidence 346889999999999999998776666 999999999999998 444 899999999999999998875 2458899999
Q ss_pred EEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204 117 TLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155 (435)
Q Consensus 117 ~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l 155 (435)
.|+|++|.++.++... .+..+++|+.|++++|.++.+
T Consensus 92 ~L~L~~N~i~~~~~~~--~l~~l~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 92 ELILTNNSLVELGDLD--PLASLKSLTYLCILRNPVTNK 128 (176)
T ss_dssp EEECCSCCCCCGGGGG--GGGGCTTCCEEECCSSGGGGS
T ss_pred EEECCCCcCCcchhhH--hhhcCCCCCEEEecCCCCCCc
Confidence 9999999999887621 357899999999999998743
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.38 E-value=1.5e-12 Score=135.73 Aligned_cols=133 Identities=16% Similarity=0.203 Sum_probs=105.4
Q ss_pred cceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCc
Q psy18204 20 KDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN 99 (435)
Q Consensus 20 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (435)
+++.|++++|.++.+|..+. ++|+.|+|++|.|+.++. .+++|++|+|++|+|+.+|. .+++|++|+|++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCc
Confidence 58999999999999997654 799999999999999886 57899999999999999976 67899999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhh-hcccEEEEecCCCc
Q psy18204 100 IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV-MFGTEIILSGDSID 172 (435)
Q Consensus 100 i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~-~~~~~l~lsgn~i~ 172 (435)
|+.++. .+++|+.|++++|.++.+|.. +++|+.|++++|+++.+... .....+.+++|.+.
T Consensus 113 l~~l~~-----~l~~L~~L~L~~N~l~~lp~~-------l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 113 LTHLPA-----LPSGLCKLWIFGNQLTSLPVL-------PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT 174 (622)
T ss_dssp CCCCCC-----CCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCCCCC-----CCCCcCEEECCCCCCCcCCCC-------CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCC
Confidence 988774 467788888888888877752 47788888888877654221 12245555555444
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=5e-13 Score=113.22 Aligned_cols=110 Identities=22% Similarity=0.200 Sum_probs=93.4
Q ss_pred CCCCCCEEEccCCCCC--CcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCC-CCCCCCCCCCCCC
Q psy18204 40 TLDQFDTIDFSNNDIR--KID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQE-LGDLDPLSTLPKL 115 (435)
Q Consensus 40 ~l~~L~~L~Ls~N~l~--~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-l~~~~~l~~l~~L 115 (435)
..++|+.|++++|.++ .++ .+..+++|+.|++++|.++.+ ..++.+++|++|+|++|.++. ++. .+..+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV--LAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH--HHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH--HhhhCCCC
Confidence 3578999999999998 666 578999999999999999998 444899999999999999988 443 55669999
Q ss_pred CEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204 116 KTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155 (435)
Q Consensus 116 ~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l 155 (435)
+.|++++|.++.++.. ..+..+++|+.|++++|.++.+
T Consensus 91 ~~L~ls~N~i~~~~~~--~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 91 THLNLSGNKIKDLSTI--EPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp CEEECTTSCCCSHHHH--GGGGGCTTCCEEECTTCGGGGS
T ss_pred CEEECCCCcCCChHHH--HHHhhCCCCCEEeCcCCcccch
Confidence 9999999999986521 1468899999999999998854
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=1.4e-14 Score=129.18 Aligned_cols=135 Identities=28% Similarity=0.454 Sum_probs=111.9
Q ss_pred ccCCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcCC-CCCCCCCCEEEccCCccccccchhhcCCCCCCe
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG-FPLLKRLSCLFFNNNRIVRIAENLQENLPNLET 92 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~ 92 (435)
.+.++++|++|++++|.++.+| .+..+++|+.|++++|.|+.++. +..+++|+.|++++|+|+.++ .+ ..+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-ccCCCCCE
Confidence 5667889999999999999988 66678999999999999998874 455689999999999999986 44 78899999
Q ss_pred eecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcccc-------ccchHHHHhcCCccceeeecchhHH
Q psy18204 93 LILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR-------PHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~-------~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
|++++|+|+.++.+..+..+++|+.|++++|+++.. ..++...+..+++|+.|| +|.++
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 999999998876544678899999999999998755 345555678899999988 45544
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=1.1e-13 Score=136.26 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=97.7
Q ss_pred cccCCCCcceEEEecCCCcccc----ccc-------ccCCCCCCEEEccCCCCCC-----cC-CCCCCCCCCEEEccCCc
Q psy18204 13 MQYTNPVKDRELDLRGYKIPVI----ENM-------GATLDQFDTIDFSNNDIRK-----ID-GFPLLKRLSCLFFNNNR 75 (435)
Q Consensus 13 ~~~~~~~~L~~L~L~~n~i~~i----~~~-------~~~l~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~ls~N~ 75 (435)
..+.++++|+.|+|++|.+..+ |.. +..+++|+.|+|++|.|+. ++ .+..+++|++|+|++|.
T Consensus 54 ~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 54 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 3466777888888888755533 321 3567888888888888876 22 45677788888888888
Q ss_pred cccccchhh----cCC---------CCCCeeecCCCcCCCCCCC---CCCCCCCCCCEEEeecCCccccc--cchHHHHh
Q psy18204 76 IVRIAENLQ----ENL---------PNLETLILTGNNIQELGDL---DPLSTLPKLKTLCLLHNPVINRP--HYRLYVAF 137 (435)
Q Consensus 76 i~~i~~~~~----~~l---------~~L~~L~Ls~N~i~~l~~~---~~l~~l~~L~~L~L~~N~i~~~~--~~~~~~~~ 137 (435)
|+......+ ..+ ++|++|+|++|+++..... ..+..+++|+.|+|++|.++... ......+.
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 764332211 223 7788888888877632210 13456677777777777776211 00000245
Q ss_pred cCCccceeeecchhHH-----HHh----hhhcccEEEEecCCCcc
Q psy18204 138 KLPQVKLLDFSKVKLK-----ALM----NVMFGTEIILSGDSIDA 173 (435)
Q Consensus 138 ~l~~L~~Ldl~~n~l~-----~l~----~~~~~~~l~lsgn~i~~ 173 (435)
.+++|+.|++++|.++ .+. .......+.+++|.+..
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 6777777777777763 222 22334677777777653
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.34 E-value=1.3e-12 Score=126.93 Aligned_cols=137 Identities=22% Similarity=0.253 Sum_probs=102.0
Q ss_pred CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCC-cC--CCCCCCCCCE-EEccCCccccccchhhcCCCCCCe
Q psy18204 18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRK-ID--GFPLLKRLSC-LFFNNNRIVRIAENLQENLPNLET 92 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~-L~ls~N~i~~i~~~~~~~l~~L~~ 92 (435)
+.++++|+|++|+|+.|| +.+..+++|+.|+|++|.+.+ ++ .|.++++|.. +.+++|+|+.+++..|..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 357899999999999888 467889999999999999854 44 5788888765 667779999998888889999999
Q ss_pred eecCCCcCCCCCCCCCCCCCCCCCEEEeec-CCccccccchHHHHhcC-CccceeeecchhHHHHhhh
Q psy18204 93 LILTGNNIQELGDLDPLSTLPKLKTLCLLH-NPVINRPHYRLYVAFKL-PQVKLLDFSKVKLKALMNV 158 (435)
Q Consensus 93 L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~-N~i~~~~~~~~~~~~~l-~~L~~Ldl~~n~l~~l~~~ 158 (435)
|++++|+|+.+++. .+....++..|++.+ |.+..++... +..+ ..++.|++++|+++.+...
T Consensus 109 L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~~~~---f~~~~~~l~~L~L~~N~i~~i~~~ 172 (350)
T 4ay9_X 109 LLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNS---FVGLSFESVILWLNKNGIQEIHNS 172 (350)
T ss_dssp EEEEEECCSSCCCC-TTCCBSSCEEEEEESCTTCCEECTTS---STTSBSSCEEEECCSSCCCEECTT
T ss_pred ccccccccccCCch-hhcccchhhhhhhccccccccccccc---hhhcchhhhhhccccccccCCChh
Confidence 99999999887763 444555667777755 4566655431 2233 3577777888777665443
No 127
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=8.2e-12 Score=120.96 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=93.9
Q ss_pred eEEEecCC-CcccccccccCCCCCCEEEccC-CCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCC
Q psy18204 22 RELDLRGY-KIPVIENMGATLDQFDTIDFSN-NDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG 97 (435)
Q Consensus 22 ~~L~L~~n-~i~~i~~~~~~l~~L~~L~Ls~-N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (435)
..++++++ .++.||. +..+++|+.|+|++ |.|+.++ .|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 46799998 8999999 88899999999996 9999997 599999999999999999999998889999999999999
Q ss_pred CcCCCCCCCCCCCCCCCCCEEEeecCCcccccc
Q psy18204 98 NNIQELGDLDPLSTLPKLKTLCLLHNPVINRPH 130 (435)
Q Consensus 98 N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~ 130 (435)
|+|+.++. ..+..++ |+.|+|.+|++.....
T Consensus 90 N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSW-KTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCH-HHcccCC-ceEEEeeCCCccCCCc
Confidence 99999886 3555555 9999999999985443
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.31 E-value=2.7e-12 Score=124.75 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=119.9
Q ss_pred ceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccc-cccchhhcCCCCCCe-eecC
Q psy18204 21 DRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIV-RIAENLQENLPNLET-LILT 96 (435)
Q Consensus 21 L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~-~i~~~~~~~l~~L~~-L~Ls 96 (435)
-+.++.++++++.||..+ ..+++.|+|++|.|+.++ .|.++++|++|+|++|++. .++...|.++++|.+ +.++
T Consensus 11 ~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 367899999999999654 468999999999999997 5899999999999999985 577788899998875 6677
Q ss_pred CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecc-hhHHHHhhhh------cccEEEEecC
Q psy18204 97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSK-VKLKALMNVM------FGTEIILSGD 169 (435)
Q Consensus 97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~-n~l~~l~~~~------~~~~l~lsgn 169 (435)
+|+|+.+++ +.+..+++|+.|++++|.++.++... .....++..|++.+ +.+..+.... ....+.+++|
T Consensus 89 ~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 89 ANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDVH---KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp ETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCCCT---TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred CCcccccCc-hhhhhccccccccccccccccCCchh---hcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 899999876 48899999999999999999887752 34566788888865 5565543322 2356788888
Q ss_pred CCcccccc
Q psy18204 170 SIDAGDQA 177 (435)
Q Consensus 170 ~i~~~~~~ 177 (435)
.+......
T Consensus 165 ~i~~i~~~ 172 (350)
T 4ay9_X 165 GIQEIHNS 172 (350)
T ss_dssp CCCEECTT
T ss_pred cccCCChh
Confidence 87654433
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=6.4e-13 Score=130.81 Aligned_cols=163 Identities=14% Similarity=0.136 Sum_probs=122.0
Q ss_pred HHhcccccCCCCcceEEEecCCCccc-----ccccccCCCCCCEEEccCCCCCCcC-----C-------CCCCCCCCEEE
Q psy18204 8 LIVQCMQYTNPVKDRELDLRGYKIPV-----IENMGATLDQFDTIDFSNNDIRKID-----G-------FPLLKRLSCLF 70 (435)
Q Consensus 8 ~i~~~~~~~~~~~L~~L~L~~n~i~~-----i~~~~~~l~~L~~L~Ls~N~l~~l~-----~-------l~~l~~L~~L~ 70 (435)
+...+..+..+++|+.|+|++|.|+. +...+..+++|+.|+|++|.+..+. + +..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 34444566678899999999999884 3345678999999999998776542 2 37889999999
Q ss_pred ccCCcccc-----ccchhhcCCCCCCeeecCCCcCCCCCCC---CCCCCC---------CCCCEEEeecCCccc--cccc
Q psy18204 71 FNNNRIVR-----IAENLQENLPNLETLILTGNNIQELGDL---DPLSTL---------PKLKTLCLLHNPVIN--RPHY 131 (435)
Q Consensus 71 ls~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~i~~l~~~---~~l~~l---------~~L~~L~L~~N~i~~--~~~~ 131 (435)
|++|.|+. ++..+ ..+++|++|+|++|.|+..... ..+..+ ++|++|+|++|.++. ++..
T Consensus 101 Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CCSCCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCCCcCCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 99999997 44444 7899999999999999643320 123333 899999999999973 3321
Q ss_pred hHHHHhcCCccceeeecchhHHH-----H-----hhhhcccEEEEecCCCc
Q psy18204 132 RLYVAFKLPQVKLLDFSKVKLKA-----L-----MNVMFGTEIILSGDSID 172 (435)
Q Consensus 132 ~~~~~~~l~~L~~Ldl~~n~l~~-----l-----~~~~~~~~l~lsgn~i~ 172 (435)
...+..+++|+.|++++|.++. + ........+.+++|.+.
T Consensus 180 -~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 180 -AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp -HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred -HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 1246789999999999999862 1 22334588999999874
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=1.6e-12 Score=126.87 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=91.5
Q ss_pred CCcceEEEecCCCccccc-----ccccCCC-CCCEEEccCCCCCCcC--CCCCC-----CCCCEEEccCCccccccch--
Q psy18204 18 PVKDRELDLRGYKIPVIE-----NMGATLD-QFDTIDFSNNDIRKID--GFPLL-----KRLSCLFFNNNRIVRIAEN-- 82 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~-----~~~~~l~-~L~~L~Ls~N~l~~l~--~l~~l-----~~L~~L~ls~N~i~~i~~~-- 82 (435)
+.+|++|+|++|.++.++ ..+..++ +|+.|+|++|.|+... .+..+ ++|+.|+|++|.++..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 345777888887777654 3455566 7778888877776653 23332 6777777777777765443
Q ss_pred --hhcCC-CCCCeeecCCCcCCCCCCC---CCCCC-CCCCCEEEeecCCccccccch-HHHHhcCC-ccceeeecchhHH
Q psy18204 83 --LQENL-PNLETLILTGNNIQELGDL---DPLST-LPKLKTLCLLHNPVINRPHYR-LYVAFKLP-QVKLLDFSKVKLK 153 (435)
Q Consensus 83 --~~~~l-~~L~~L~Ls~N~i~~l~~~---~~l~~-l~~L~~L~L~~N~i~~~~~~~-~~~~~~l~-~L~~Ldl~~n~l~ 153 (435)
.+..+ ++|++|+|++|+|+..+.. ..+.. .++|+.|+|++|.++...... ...+..++ +|+.|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 12344 6777777777777665431 01233 246777777777776432211 11223444 6777777777664
Q ss_pred HHh-----hh-----hcccEEEEecCCCcc
Q psy18204 154 ALM-----NV-----MFGTEIILSGDSIDA 173 (435)
Q Consensus 154 ~l~-----~~-----~~~~~l~lsgn~i~~ 173 (435)
... .. .....+++++|.+..
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 321 11 244667777766654
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.27 E-value=6e-13 Score=128.19 Aligned_cols=169 Identities=17% Similarity=0.093 Sum_probs=109.5
Q ss_pred CcceEEEecCCCcccccccccCCCCCCEEEccCCCCCC--cC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeec
Q psy18204 19 VKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK--ID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~L 95 (435)
.+++.|++++|.+...+.....+++|+.|++++|.++. ++ .+..+++|++|++++|.++......++.+++|++|+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 57788888888887655444567888888888888764 33 4677788888888888887543444467888888888
Q ss_pred CCC-cCCC--CCCCCCCCCCCCCCEEEeecC-CccccccchHHHHhcCC-ccceeeecchhH----HHH----hhhhccc
Q psy18204 96 TGN-NIQE--LGDLDPLSTLPKLKTLCLLHN-PVINRPHYRLYVAFKLP-QVKLLDFSKVKL----KAL----MNVMFGT 162 (435)
Q Consensus 96 s~N-~i~~--l~~~~~l~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~l~-~L~~Ldl~~n~l----~~l----~~~~~~~ 162 (435)
++| .+++ ++. .+..+++|+.|++++| .++.... ...+..++ +|+.|++++|.+ ..+ .......
T Consensus 150 ~~~~~l~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 150 SGCSGFSEFALQT--LLSSCSRLDELNLSWCFDFTEKHV--QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp TTCBSCCHHHHHH--HHHHCTTCCEEECCCCTTCCHHHH--HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred CCCCCCCHHHHHH--HHhcCCCCCEEcCCCCCCcChHHH--HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 888 5663 332 4566788888888888 7764210 12456778 888888888843 222 2233457
Q ss_pred EEEEecCC-Ccc-cccceeecCCccccccch
Q psy18204 163 EIILSGDS-IDA-GDQALFIMNHRTRLDWNF 191 (435)
Q Consensus 163 ~l~lsgn~-i~~-~~~~~~i~nh~~~lD~l~ 191 (435)
.+.++++. +.. ....+..+.++..++...
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 88888877 432 222333334455554433
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=7.1e-13 Score=129.43 Aligned_cols=162 Identities=16% Similarity=0.184 Sum_probs=116.9
Q ss_pred cccCCCC-cceEEEecCCCccccc-ccccC----C-CCCCEEEccCCCCCCcC------CCCCC-CCCCEEEccCCcccc
Q psy18204 13 MQYTNPV-KDRELDLRGYKIPVIE-NMGAT----L-DQFDTIDFSNNDIRKID------GFPLL-KRLSCLFFNNNRIVR 78 (435)
Q Consensus 13 ~~~~~~~-~L~~L~L~~n~i~~i~-~~~~~----l-~~L~~L~Ls~N~l~~l~------~l~~l-~~L~~L~ls~N~i~~ 78 (435)
..+.+++ +|++|+|++|.|+... ..+.. . ++|+.|+|++|.++... .+..+ ++|+.|++++|+|+.
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 3455666 8999999999998653 33332 2 89999999999998764 14555 799999999999998
Q ss_pred ccchh----hcC-CCCCCeeecCCCcCCCCCCC---CCCCCCC-CCCEEEeecCCccccccchH-HHHhcC-Cccceeee
Q psy18204 79 IAENL----QEN-LPNLETLILTGNNIQELGDL---DPLSTLP-KLKTLCLLHNPVINRPHYRL-YVAFKL-PQVKLLDF 147 (435)
Q Consensus 79 i~~~~----~~~-l~~L~~L~Ls~N~i~~l~~~---~~l~~l~-~L~~L~L~~N~i~~~~~~~~-~~~~~l-~~L~~Ldl 147 (435)
.+... +.. .++|++|+|++|.|++.... ..+..++ +|+.|+|++|.++....... ..+..+ ++|+.||+
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence 76543 234 36999999999999864421 1234454 89999999999986654322 234556 59999999
Q ss_pred cchhHHH-----Hhhh-----hcccEEEEecCCCccc
Q psy18204 148 SKVKLKA-----LMNV-----MFGTEIILSGDSIDAG 174 (435)
Q Consensus 148 ~~n~l~~-----l~~~-----~~~~~l~lsgn~i~~~ 174 (435)
++|.++. +... .....+++++|.+...
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 9999876 3332 2457899999987643
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.25 E-value=2.6e-12 Score=123.71 Aligned_cols=143 Identities=16% Similarity=0.101 Sum_probs=78.2
Q ss_pred cceEEEecCCCcccccccccCC--CCCCEEEccCCCCCCcC-CCCCCCCCCEEEccCCccccc-cchhhcCCCCCCeeec
Q psy18204 20 KDRELDLRGYKIPVIENMGATL--DQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRI-AENLQENLPNLETLIL 95 (435)
Q Consensus 20 ~L~~L~L~~n~i~~i~~~~~~l--~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ls~N~i~~i-~~~~~~~l~~L~~L~L 95 (435)
.++.+++++|.+. +..+..+ .+++.|++++|.+.+.. .+..+++|+.|++++|.++.. .+..+..+++|++|+|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 3566666666655 2222223 56666666666665553 455566666666666666532 2333356666666666
Q ss_pred CCCcCCCCCCCCCCCCCCCCCEEEeecC-Cccc--cccchHHHHhcCCccceeeecch-hHHH------Hhhhh-cccEE
Q psy18204 96 TGNNIQELGDLDPLSTLPKLKTLCLLHN-PVIN--RPHYRLYVAFKLPQVKLLDFSKV-KLKA------LMNVM-FGTEI 164 (435)
Q Consensus 96 s~N~i~~l~~~~~l~~l~~L~~L~L~~N-~i~~--~~~~~~~~~~~l~~L~~Ldl~~n-~l~~------l~~~~-~~~~l 164 (435)
++|.+++... ..+..+++|+.|++++| .++. ++. .+..+++|+.|++++| .++. +.... ....+
T Consensus 126 ~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~l~~----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 126 EGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFSEFALQT----LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp TTCBCCHHHH-HHHTTCTTCSEEECTTCBSCCHHHHHH----HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred cCcccCHHHH-HHHhcCCCCCEEECCCCCCCCHHHHHH----HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 6666553221 24555666666666666 4542 222 3455666666666666 4432 12222 44666
Q ss_pred EEecC
Q psy18204 165 ILSGD 169 (435)
Q Consensus 165 ~lsgn 169 (435)
.++++
T Consensus 201 ~l~~~ 205 (336)
T 2ast_B 201 NLSGY 205 (336)
T ss_dssp ECCSC
T ss_pred EeCCC
Confidence 66666
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1.7e-11 Score=118.74 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=92.4
Q ss_pred CEEEccCC-CCCCcCCCCCCCCCCEEEccC-CccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeec
Q psy18204 45 DTIDFSNN-DIRKIDGFPLLKRLSCLFFNN-NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122 (435)
Q Consensus 45 ~~L~Ls~N-~l~~l~~l~~l~~L~~L~ls~-N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~ 122 (435)
..++++++ .|+.+|.++.+++|+.|+|++ |+|+.+++..|+++++|+.|+|++|+|+.+++ ..|.++++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCC
Confidence 45799998 999998899999999999996 99999998888999999999999999999876 4789999999999999
Q ss_pred CCccccccchHHHHhcCCccceeeecchhHHH
Q psy18204 123 NPVINRPHYRLYVAFKLPQVKLLDFSKVKLKA 154 (435)
Q Consensus 123 N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~ 154 (435)
|.++.++.. .+..++ |+.|++++|.+.+
T Consensus 90 N~l~~~~~~---~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWK---TVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCST---TTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHH---HcccCC-ceEEEeeCCCccC
Confidence 999998874 233444 9999999998764
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=1.7e-11 Score=118.05 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=52.0
Q ss_pred CCcceEEEecCCCcc--------------------ccc-ccccC--------CCCCCEEEccCCCCCCcC--CCCCCCCC
Q psy18204 18 PVKDRELDLRGYKIP--------------------VIE-NMGAT--------LDQFDTIDFSNNDIRKID--GFPLLKRL 66 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~--------------------~i~-~~~~~--------l~~L~~L~Ls~N~l~~l~--~l~~l~~L 66 (435)
+++|+.|+|++|+|. .|| ..|.. +++|+.|+|++ .++.++ .|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 678899999998888 333 34556 88899999988 888886 58888899
Q ss_pred CEEEccCCccccccchhhcCCC
Q psy18204 67 SCLFFNNNRIVRIAENLQENLP 88 (435)
Q Consensus 67 ~~L~ls~N~i~~i~~~~~~~l~ 88 (435)
+.|++++|.++.|++..|.++.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~ 148 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSV 148 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTT
T ss_pred ceEEcCCCCccccchhhhcCCC
Confidence 9999988887666655444433
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=2.6e-11 Score=116.66 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=79.4
Q ss_pred CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCC--------------------------------
Q psy18204 18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPL-------------------------------- 62 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~-------------------------------- 62 (435)
+++|+.|+|++ .++.|+ ..|..|++|+.|++++|.++.++ .|..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 88888888888 888777 56888888999999888775553 2333
Q ss_pred ----------------------------------------------CCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204 63 ----------------------------------------------LKRLSCLFFNNNRIVRIAENLQENLPNLETLILT 96 (435)
Q Consensus 63 ----------------------------------------------l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls 96 (435)
+++|+.|++++|+++.|++..|.+|++|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 4455555555555555555555555555555555
Q ss_pred CCcCCCCCCCCCCCCCCCCC-EEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 97 GNNIQELGDLDPLSTLPKLK-TLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 97 ~N~i~~l~~~~~l~~l~~L~-~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
+| ++.++. ..|.+|++|+ .+++.+ .++.++.+ .+..|++|+.++++.|.++
T Consensus 259 ~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~~---aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 259 HN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIEFG---AFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TT-CCEECT-TTTTTCTTCCEEEEECT-TCCEECTT---TTTTCTTEEEEEECSSCCC
T ss_pred cc-cceehH-HHhhCChhccEEEEEcc-cceEEchh---hhhCCccCCEEEeCCCccC
Confidence 55 555554 3555555555 555555 45555443 3455555555555555554
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.08 E-value=1.7e-11 Score=123.19 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=119.1
Q ss_pred CCCcceEEEecCCCccc-----ccccccCCCCCCEEEccCCCCCCcC------C-CCCCCCCCEEEccCCcccc-----c
Q psy18204 17 NPVKDRELDLRGYKIPV-----IENMGATLDQFDTIDFSNNDIRKID------G-FPLLKRLSCLFFNNNRIVR-----I 79 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~-----i~~~~~~l~~L~~L~Ls~N~l~~l~------~-l~~l~~L~~L~ls~N~i~~-----i 79 (435)
+.++|+.|++++|.++. ++..+..+++|+.|++++|.++... . +..+++|+.|++++|.|+. +
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 35689999999999885 4566667899999999999887642 2 3468899999999999987 4
Q ss_pred cchhhcCCCCCCeeecCCCcCCCCCCC---CC-CCCCCCCCEEEeecCCccccccc-hHHHHhcCCccceeeecchhHHH
Q psy18204 80 AENLQENLPNLETLILTGNNIQELGDL---DP-LSTLPKLKTLCLLHNPVINRPHY-RLYVAFKLPQVKLLDFSKVKLKA 154 (435)
Q Consensus 80 ~~~~~~~l~~L~~L~Ls~N~i~~l~~~---~~-l~~l~~L~~L~L~~N~i~~~~~~-~~~~~~~l~~L~~Ldl~~n~l~~ 154 (435)
+..+ ..+++|++|+|++|.+++.+.. .. ....++|+.|++++|.++..... -...+..+++|+.||+++|.++.
T Consensus 277 ~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 277 CRVL-RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHH-HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HHHH-hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 4443 6789999999999988643210 01 12346899999999998754321 11245678899999999998765
Q ss_pred H-----hh-----hhcccEEEEecCCCcc-----cccceeecCCccccccc
Q psy18204 155 L-----MN-----VMFGTEIILSGDSIDA-----GDQALFIMNHRTRLDWN 190 (435)
Q Consensus 155 l-----~~-----~~~~~~l~lsgn~i~~-----~~~~~~i~nh~~~lD~l 190 (435)
. .. ......+++++|.+.. ....+....++..+|..
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 3 12 1245788888888763 12222334455555543
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.04 E-value=2.3e-11 Score=122.17 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=117.3
Q ss_pred ccCCCCcceEEEecCCCccccc--cc----ccCCCCCCEEEccCCCCCCc-----C-CCCCCCCCCEEEccCCcccccc-
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIE--NM----GATLDQFDTIDFSNNDIRKI-----D-GFPLLKRLSCLFFNNNRIVRIA- 80 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~--~~----~~~l~~L~~L~Ls~N~l~~l-----~-~l~~l~~L~~L~ls~N~i~~i~- 80 (435)
.+.++++|++|++++|.++... .. ....++|+.|++++|.++.. + .+..+++|+.|++++|.++...
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 4456789999999999987432 11 12366999999999999873 2 4667899999999999998642
Q ss_pred ----chhhcCCCCCCeeecCCCcCCC-----CCCCCCCCCCCCCCEEEeecCCccccccchH--HHHhcCCccceeeecc
Q psy18204 81 ----ENLQENLPNLETLILTGNNIQE-----LGDLDPLSTLPKLKTLCLLHNPVINRPHYRL--YVAFKLPQVKLLDFSK 149 (435)
Q Consensus 81 ----~~~~~~l~~L~~L~Ls~N~i~~-----l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~--~~~~~l~~L~~Ldl~~ 149 (435)
+.++..+++|++|++++|.++. ++. .+..+++|+.|++++|.++....... ......++|+.|++++
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 4454578999999999999987 343 56678999999999999875432111 0112336999999999
Q ss_pred hhHHHH-----hh----hhcccEEEEecCCCccc
Q psy18204 150 VKLKAL-----MN----VMFGTEIILSGDSIDAG 174 (435)
Q Consensus 150 n~l~~l-----~~----~~~~~~l~lsgn~i~~~ 174 (435)
|.++.. .. ......+++++|.+...
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 987542 22 24558999999987643
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=2.9e-11 Score=118.34 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=98.2
Q ss_pred CcceEEEecCCCccccc-----cccc-CCCCCCEEEccCCCCCCcC--CC-CCCCCCCEEEccCCccccccchhh-----
Q psy18204 19 VKDRELDLRGYKIPVIE-----NMGA-TLDQFDTIDFSNNDIRKID--GF-PLLKRLSCLFFNNNRIVRIAENLQ----- 84 (435)
Q Consensus 19 ~~L~~L~L~~n~i~~i~-----~~~~-~l~~L~~L~Ls~N~l~~l~--~l-~~l~~L~~L~ls~N~i~~i~~~~~----- 84 (435)
++|+.|+|++|.|+... ..+. ...+|+.|+|++|.|+... .+ ..+++|+.|+|++|.|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46788888888887432 2222 2367888888888886532 22 335678888888888875433221
Q ss_pred cCCCCCCeeecCCCcCCCCCC---CCCCCCCCCCCEEEeecCCccccccch-HHHHhcCCccceeeecchhHHHH-----
Q psy18204 85 ENLPNLETLILTGNNIQELGD---LDPLSTLPKLKTLCLLHNPVINRPHYR-LYVAFKLPQVKLLDFSKVKLKAL----- 155 (435)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~i~~~~~~~-~~~~~~l~~L~~Ldl~~n~l~~l----- 155 (435)
...++|++|+|++|.|++.+. ...+..+++|++|+|++|.|+...... ...+..+++|+.||+++|.++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 346778888888888765321 013356778888888888877532111 12345677888888888877542
Q ss_pred h----hhhcccEEEEecCCCc
Q psy18204 156 M----NVMFGTEIILSGDSID 172 (435)
Q Consensus 156 ~----~~~~~~~l~lsgn~i~ 172 (435)
. .......+++++|.+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 1 2234578888888775
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.94 E-value=6.4e-11 Score=115.94 Aligned_cols=139 Identities=13% Similarity=0.096 Sum_probs=102.6
Q ss_pred CCCcceEEEecCCCccc--ccccccCCCCCCEEEccCCCCCCcC--CC-----CCCCCCCEEEccCCccccccc----hh
Q psy18204 17 NPVKDRELDLRGYKIPV--IENMGATLDQFDTIDFSNNDIRKID--GF-----PLLKRLSCLFFNNNRIVRIAE----NL 83 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~--i~~~~~~l~~L~~L~Ls~N~l~~l~--~l-----~~l~~L~~L~ls~N~i~~i~~----~~ 83 (435)
++.+|++|+|++|.|+. +......+.+|+.|+|++|.|+... .+ ...++|+.|+|++|.|+.... ..
T Consensus 99 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 99 GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp CSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 34689999999999874 3344445668999999999997653 22 356889999999999986332 12
Q ss_pred hcCCCCCCeeecCCCcCCCCCC---CCCCCCCCCCCEEEeecCCccccccch-HHHHhcCCccceeeecchhHHHH
Q psy18204 84 QENLPNLETLILTGNNIQELGD---LDPLSTLPKLKTLCLLHNPVINRPHYR-LYVAFKLPQVKLLDFSKVKLKAL 155 (435)
Q Consensus 84 ~~~l~~L~~L~Ls~N~i~~l~~---~~~l~~l~~L~~L~L~~N~i~~~~~~~-~~~~~~l~~L~~Ldl~~n~l~~l 155 (435)
+..+++|++|+|++|.|++.+. ...+..+++|+.|+|++|.|+...... ...+..+++|+.||+++|.++..
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 2678999999999999976431 124566789999999999998643221 12355779999999999998654
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.84 E-value=2e-09 Score=99.72 Aligned_cols=103 Identities=27% Similarity=0.378 Sum_probs=80.9
Q ss_pred EEccCCCCCCcCC-----CCCCCCCCEEEccCCccccccc--hhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEE
Q psy18204 47 IDFSNNDIRKIDG-----FPLLKRLSCLFFNNNRIVRIAE--NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLC 119 (435)
Q Consensus 47 L~Ls~N~l~~l~~-----l~~l~~L~~L~ls~N~i~~i~~--~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~ 119 (435)
++++.|....+++ ..++++|+.|+|++|+|+.++. ..++.+++|+.|+|++|+|+++..++.+..+ +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 4556665443331 1467899999999999998753 4557899999999999999988766666666 999999
Q ss_pred eecCCccc-c---ccchHHHHhcCCccceeeecch
Q psy18204 120 LLHNPVIN-R---PHYRLYVAFKLPQVKLLDFSKV 150 (435)
Q Consensus 120 L~~N~i~~-~---~~~~~~~~~~l~~L~~Ldl~~n 150 (435)
|++|+++. + +.|+..++..+|+|+.||-...
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence 99999984 3 3677778999999999996544
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=1.5e-08 Score=99.97 Aligned_cols=122 Identities=11% Similarity=0.176 Sum_probs=59.8
Q ss_pred cceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204 20 KDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT 96 (435)
Q Consensus 20 ~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls 96 (435)
+|+.+.+.+ .+..|+ ..|..|.+|+.++|++|.++.++ .|. +++|+.+.+.+ .++.|+...|.+|++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecC
Confidence 455555553 444443 34445555555555555555443 232 34455555542 2444444444455555554444
Q ss_pred C---------------------CcCCCCCCCCCCCCCCCCCEEEeecCCcc-----ccccchHHHHhcCCccceeeec
Q psy18204 97 G---------------------NNIQELGDLDPLSTLPKLKTLCLLHNPVI-----NRPHYRLYVAFKLPQVKLLDFS 148 (435)
Q Consensus 97 ~---------------------N~i~~l~~~~~l~~l~~L~~L~L~~N~i~-----~~~~~~~~~~~~l~~L~~Ldl~ 148 (435)
+ |.++.++. ..|.+|++|+.+.+.+|.+. .++.+ .+..|++|+.+++.
T Consensus 235 ~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~-~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 235 ENVSTIGQEAFRESGITTVKLPNGVTNIAS-RAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIP 308 (401)
T ss_dssp TTCCEECTTTTTTCCCSEEEEETTCCEECT-TTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCC
T ss_pred CCccCccccccccCCccEEEeCCCccEECh-hHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeC
Confidence 3 23444443 25556666666666555543 33333 34555666666655
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=2.3e-08 Score=98.71 Aligned_cols=146 Identities=16% Similarity=0.099 Sum_probs=105.6
Q ss_pred CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeee
Q psy18204 18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLI 94 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~ 94 (435)
+.+|+.+.|..+ ++.|+ ..|..+.+|+.|+|.+| ++.++ .|.+ .+|+.+.+ .|.++.|+...|.+|++|+.+.
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence 578888888844 77776 56778888999998875 66665 5666 67888888 5668888888888888888888
Q ss_pred cCCCcCC-----CCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHHhhhh----cccEEE
Q psy18204 95 LTGNNIQ-----ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVM----FGTEII 165 (435)
Q Consensus 95 Ls~N~i~-----~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l~~~~----~~~~l~ 165 (435)
+.+|.+. .++. ..|.+|++|+.+.|. |.++.++.+ .+..|++|+.+++..+ ++.+.... ....+.
T Consensus 278 l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~-~~i~~I~~~---aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~ 351 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHP-YCLEGCPKLARFEIP-ESIRILGQG---LLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVK 351 (401)
T ss_dssp EESSCCCCCTTCEECT-TTTTTCTTCCEECCC-TTCCEECTT---TTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEE
T ss_pred eCCccccCCcccEECH-HHhhCCccCCeEEeC-CceEEEhhh---hhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEE
Confidence 8887765 4554 478888888888887 457777665 4577888888888654 44332222 447788
Q ss_pred EecCCCcc
Q psy18204 166 LSGDSIDA 173 (435)
Q Consensus 166 lsgn~i~~ 173 (435)
+.++....
T Consensus 352 l~~n~~~~ 359 (401)
T 4fdw_A 352 VEGTTPPQ 359 (401)
T ss_dssp ECCSSCCB
T ss_pred EcCCCCcc
Confidence 88776553
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.61 E-value=5.9e-09 Score=107.98 Aligned_cols=156 Identities=11% Similarity=0.054 Sum_probs=106.3
Q ss_pred CCCCcceEEEecC-----------CCcc--cccccccCCCCCCEEEccCCCCCCcC--CCCC-CCCCCEEEcc----CCc
Q psy18204 16 TNPVKDRELDLRG-----------YKIP--VIENMGATLDQFDTIDFSNNDIRKID--GFPL-LKRLSCLFFN----NNR 75 (435)
Q Consensus 16 ~~~~~L~~L~L~~-----------n~i~--~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~~-l~~L~~L~ls----~N~ 75 (435)
.++++|++|++++ |.++ .++.....+++|+.|+++.|.+++.. .+.. +++|+.|+++ .|.
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 3577899999993 4565 24444556889999999888887642 3443 7889999996 778
Q ss_pred cccccc-----hhhcCCCCCCeeecCCCc--CCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeec
Q psy18204 76 IVRIAE-----NLQENLPNLETLILTGNN--IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148 (435)
Q Consensus 76 i~~i~~-----~~~~~l~~L~~L~Ls~N~--i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~ 148 (435)
++..|. .++.++++|+.|+|++|. +++.........+++|+.|++++|.++.... ...+..+++|+.|+++
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL--MEFSRGCPNLQKLEMR 496 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH--HHHHTCCTTCCEEEEE
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH--HHHHhcCcccCeeecc
Confidence 886432 234678999999997543 4432211112347889999999998875221 1245678999999999
Q ss_pred chhHHHH------hhhhcccEEEEecCCCcc
Q psy18204 149 KVKLKAL------MNVMFGTEIILSGDSIDA 173 (435)
Q Consensus 149 ~n~l~~l------~~~~~~~~l~lsgn~i~~ 173 (435)
+|.++.. ........+.+++|.+..
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 9986432 123345889999988653
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=2e-08 Score=88.06 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=86.3
Q ss_pred cccccCCCCCCEEEccCC-CCCCcC------CCCCCCCCCEEEccCCcccc-----ccchhhcCCCCCCeeecCCCcCCC
Q psy18204 35 ENMGATLDQFDTIDFSNN-DIRKID------GFPLLKRLSCLFFNNNRIVR-----IAENLQENLPNLETLILTGNNIQE 102 (435)
Q Consensus 35 ~~~~~~l~~L~~L~Ls~N-~l~~l~------~l~~l~~L~~L~ls~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~i~~ 102 (435)
...+...++|+.|+|++| .|..-. .+...++|++|+|++|.|.. +...+ ...++|++|+|++|.|++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcCCH
Confidence 345566788999999998 887531 46677889999999999885 22233 566789999999999876
Q ss_pred CCC---CCCCCCCCCCCEEEe--ecCCccccccc-hHHHHhcCCccceeeecchhHHH
Q psy18204 103 LGD---LDPLSTLPKLKTLCL--LHNPVINRPHY-RLYVAFKLPQVKLLDFSKVKLKA 154 (435)
Q Consensus 103 l~~---~~~l~~l~~L~~L~L--~~N~i~~~~~~-~~~~~~~l~~L~~Ldl~~n~l~~ 154 (435)
.+. ...+...++|+.|+| ++|.|+..... -...+...++|+.|++++|.+..
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 321 125677788999999 88998853211 12245677899999999998863
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.55 E-value=7e-08 Score=93.73 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=99.8
Q ss_pred CCCCcceEEEecCCCcc----------cccccccCCCCCCEEEccCCCCCCcCCCCCCCCCCEEEccCCcccccc-chhh
Q psy18204 16 TNPVKDRELDLRGYKIP----------VIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA-ENLQ 84 (435)
Q Consensus 16 ~~~~~L~~L~L~~n~i~----------~i~~~~~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ls~N~i~~i~-~~~~ 84 (435)
..+++|+.|.+.++... .+...+..+++|+.|+|++|.-..++.+. +++|++|.+..|.++.-. ..+.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHH
Confidence 34568889988765321 24455667899999999988322344443 789999999999887422 2221
Q ss_pred -cCCCCCCeeecCC--CcCC------CCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHHHH
Q psy18204 85 -ENLPNLETLILTG--NNIQ------ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155 (435)
Q Consensus 85 -~~l~~L~~L~Ls~--N~i~------~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~~l 155 (435)
..+|+|+.|+|+. |... .+..+-....+++|+.|+|.+|.++............+++|+.||++.|.+...
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 3789999999863 2221 111111113588999999999998742211111113578999999999987542
Q ss_pred ---------hhhhcccEEEEecCCCc
Q psy18204 156 ---------MNVMFGTEIILSGDSID 172 (435)
Q Consensus 156 ---------~~~~~~~~l~lsgn~i~ 172 (435)
........++++.|.+.
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhhcccCCcceEEECCCCcCC
Confidence 22344577888777654
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.51 E-value=8.4e-08 Score=99.26 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=88.9
Q ss_pred CCCcceEEEecCCCccc-----ccccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCccccccchhhc
Q psy18204 17 NPVKDRELDLRGYKIPV-----IENMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRIVRIAENLQE 85 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~-----i~~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i~~i~~~~~~ 85 (435)
++++|++|+|++|.++. ++.....+++|+.|++++|.++.+. .+..+++|+.|++++|.+..++.. +.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~-~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH-HH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH-Hh
Confidence 45677888888877652 3334456778888888888876432 135678888888888888877533 46
Q ss_pred CCCCCCeeecCCCcCC---------------------------CCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhc
Q psy18204 86 NLPNLETLILTGNNIQ---------------------------ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK 138 (435)
Q Consensus 86 ~l~~L~~L~Ls~N~i~---------------------------~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~ 138 (435)
.+++|+.|+++.+... .++. .+..+++|+.|+|++|.++.... ...+..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~~--~~~~~~ 316 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETEDH--CTLIQK 316 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHHH--HHHHTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHHH--HHHHHh
Confidence 7777777777642211 1111 23346677777777777553211 123567
Q ss_pred CCccceeeecchhHHH-----H-hhhhcccEEEEe
Q psy18204 139 LPQVKLLDFSKVKLKA-----L-MNVMFGTEIILS 167 (435)
Q Consensus 139 l~~L~~Ldl~~n~l~~-----l-~~~~~~~~l~ls 167 (435)
+++|+.|+++ +.+.. + ........+.++
T Consensus 317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 8888888887 33322 1 112335788888
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=2e-08 Score=88.10 Aligned_cols=113 Identities=15% Similarity=0.082 Sum_probs=87.8
Q ss_pred ccCCCCcceEEEecCC-Cccc-----ccccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCcccc---
Q psy18204 14 QYTNPVKDRELDLRGY-KIPV-----IENMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRIVR--- 78 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n-~i~~-----i~~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i~~--- 78 (435)
.+.+.++|++|+|++| .|.. +...+...++|+.|+|++|.|..-. .+...++|++|+|++|.|+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3456789999999999 8873 3355566789999999999997632 35566889999999999996
Q ss_pred --ccchhhcCCCCCCeeec--CCCcCCCCCC---CCCCCCCCCCCEEEeecCCccc
Q psy18204 79 --IAENLQENLPNLETLIL--TGNNIQELGD---LDPLSTLPKLKTLCLLHNPVIN 127 (435)
Q Consensus 79 --i~~~~~~~l~~L~~L~L--s~N~i~~l~~---~~~l~~l~~L~~L~L~~N~i~~ 127 (435)
+...+ ...++|++|+| ++|.|++... ...+...++|+.|+|++|.+..
T Consensus 111 ~~l~~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVEAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 32333 67789999999 8899976331 1245567899999999999874
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=9.7e-08 Score=92.74 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=102.5
Q ss_pred CCCCcceEEEecCCCcccccccccCCCCCCEEEccCCCCCCcC--CC--CCCCCCCEEEccC--Cc------cccccchh
Q psy18204 16 TNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GF--PLLKRLSCLFFNN--NR------IVRIAENL 83 (435)
Q Consensus 16 ~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~Ls~N~l~~l~--~l--~~l~~L~~L~ls~--N~------i~~i~~~~ 83 (435)
..+++|+.|.+++|.-..++. + .+++|+.|+|..|.+..-. .+ ..+++|+.|+|+. |. +..+.+.+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 456899999999984224444 3 3789999999999886432 23 4789999999863 22 22232222
Q ss_pred h-cCCCCCCeeecCCCcCCCCCC--CCCCCCCCCCCEEEeecCCccccccchH-HHHhcCCccceeeecchhHHHH----
Q psy18204 84 Q-ENLPNLETLILTGNNIQELGD--LDPLSTLPKLKTLCLLHNPVINRPHYRL-YVAFKLPQVKLLDFSKVKLKAL---- 155 (435)
Q Consensus 84 ~-~~l~~L~~L~Ls~N~i~~l~~--~~~l~~l~~L~~L~L~~N~i~~~~~~~~-~~~~~l~~L~~Ldl~~n~l~~l---- 155 (435)
. ..+|+|+.|+|++|.+++... +.....+++|++|+|+.|.++....... ..+..+++|+.|+++.|.++.-
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence 1 358999999999999864221 1112357899999999999886321111 1235689999999999988643
Q ss_pred hhhhcccEEEEecCC
Q psy18204 156 MNVMFGTEIILSGDS 170 (435)
Q Consensus 156 ~~~~~~~~l~lsgn~ 170 (435)
.....+.++.++.+.
T Consensus 327 l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHCCSEEECCSBC
T ss_pred HHHHcCCEEEecCCc
Confidence 222236788877765
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.34 E-value=5e-08 Score=100.93 Aligned_cols=152 Identities=10% Similarity=0.067 Sum_probs=102.4
Q ss_pred CCCcceEEEecC---------CCccc--ccccccCCCCCCEEEccCCCCCCcC--CCC-CCCCCCEEEcc--C----Ccc
Q psy18204 17 NPVKDRELDLRG---------YKIPV--IENMGATLDQFDTIDFSNNDIRKID--GFP-LLKRLSCLFFN--N----NRI 76 (435)
Q Consensus 17 ~~~~L~~L~L~~---------n~i~~--i~~~~~~l~~L~~L~Ls~N~l~~l~--~l~-~l~~L~~L~ls--~----N~i 76 (435)
++++|++|++.+ +.++. +......+++|+.|+++.|.++... .+. .+++|+.|+++ + |.+
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 477899999943 34442 2233345789999999889887643 333 57889999998 4 667
Q ss_pred ccccc-----hhhcCCCCCCeeecCCCcCCCCCCCCCCCC-CCCCCEEEeecCCccccccchHHHHhcCCccceeeecch
Q psy18204 77 VRIAE-----NLQENLPNLETLILTGNNIQELGDLDPLST-LPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKV 150 (435)
Q Consensus 77 ~~i~~-----~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~-l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n 150 (435)
+..+. .++..+++|+.|+|++ .+++... ..+.. +++|+.|+|++|.++.... ......+++|+.|++++|
T Consensus 416 ~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~-~~l~~~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 416 TLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF-EYIGTYAKKMEMLSVAFAGDSDLGM--HHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp TCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-HHHHHHCTTCCEEEEESCCSSHHHH--HHHHHHCTTCCEEEEESC
T ss_pred cCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-HHHHHhchhccEeeccCCCCcHHHH--HHHHhcCCCcCEEECcCC
Confidence 74432 2347789999999977 5544221 23333 7889999999999864322 113366899999999999
Q ss_pred hHHHHh------hhhcccEEEEecCCCc
Q psy18204 151 KLKALM------NVMFGTEIILSGDSID 172 (435)
Q Consensus 151 ~l~~l~------~~~~~~~l~lsgn~i~ 172 (435)
.++... .......+.++++.+.
T Consensus 492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 492 PFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 874321 2345588889888763
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=1.9e-07 Score=80.51 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=72.6
Q ss_pred CCCCCEEEccCCCCCCc--CCCCCCCCCCEEEccCCc-cccccchhhcC----CCCCCeeecCCC-cCCCCCCCCCCCCC
Q psy18204 41 LDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNR-IVRIAENLQEN----LPNLETLILTGN-NIQELGDLDPLSTL 112 (435)
Q Consensus 41 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ls~N~-i~~i~~~~~~~----l~~L~~L~Ls~N-~i~~l~~~~~l~~l 112 (435)
-.+|+.||+|++.|+.. ..+..+++|+.|+|++|. |+.-.-..... +++|++|+|++| +|++-+ +..+..+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~ 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHF 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGC
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcC
Confidence 34799999999998765 367889999999999985 77532222234 357999999998 587654 3467789
Q ss_pred CCCCEEEeecCC-ccccccchHHHHhcCCccce
Q psy18204 113 PKLKTLCLLHNP-VINRPHYRLYVAFKLPQVKL 144 (435)
Q Consensus 113 ~~L~~L~L~~N~-i~~~~~~~~~~~~~l~~L~~ 144 (435)
++|+.|+|++++ |+.........-..+|++++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 999999999987 55432222223456777654
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=3.7e-07 Score=84.43 Aligned_cols=100 Identities=20% Similarity=0.305 Sum_probs=72.4
Q ss_pred CCcceE--EEecCCCcccccc----cccCCCCCCEEEccCCCCCCcCCCC----CCCCCCEEEccCCccccccchhhcCC
Q psy18204 18 PVKDRE--LDLRGYKIPVIEN----MGATLDQFDTIDFSNNDIRKIDGFP----LLKRLSCLFFNNNRIVRIAENLQENL 87 (435)
Q Consensus 18 ~~~L~~--L~L~~n~i~~i~~----~~~~l~~L~~L~Ls~N~l~~l~~l~----~l~~L~~L~ls~N~i~~i~~~~~~~l 87 (435)
.+.|.. ++++.|....++. ....+++|+.|+|++|.|++++++. .+++|+.|+|++|+|+.+. .+ ..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l-~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-EL-DKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GG-GGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hh-hhc
Confidence 334454 6777776555442 2346889999999999999886543 7899999999999999873 22 333
Q ss_pred C--CCCeeecCCCcCCC-CCCC-----CCCCCCCCCCEEE
Q psy18204 88 P--NLETLILTGNNIQE-LGDL-----DPLSTLPKLKTLC 119 (435)
Q Consensus 88 ~--~L~~L~Ls~N~i~~-l~~~-----~~l~~l~~L~~L~ 119 (435)
. +|++|+|++|.+.. ++.. ..+..+++|+.|+
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3 89999999999964 3310 1356788998886
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.18 E-value=2.1e-07 Score=96.22 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=97.5
Q ss_pred CCCcceEEEecCCCccc--ccccccCCCCCCEEEcc--C----CCCCCcC---C----CCCCCCCCEEEccCCcccccc-
Q psy18204 17 NPVKDRELDLRGYKIPV--IENMGATLDQFDTIDFS--N----NDIRKID---G----FPLLKRLSCLFFNNNRIVRIA- 80 (435)
Q Consensus 17 ~~~~L~~L~L~~n~i~~--i~~~~~~l~~L~~L~Ls--~----N~l~~l~---~----l~~l~~L~~L~ls~N~i~~i~- 80 (435)
++++|+.|.+..|.++. +......+++|+.|+++ + |.++..+ + +..+++|+.|++++ .++...
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 36789999999898874 23344458999999999 4 6676442 1 46678999999987 666432
Q ss_pred chhhcCCCCCCeeecCCCcCCCCCCCCCC-CCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 81 ENLQENLPNLETLILTGNNIQELGDLDPL-STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 81 ~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l-~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
..+...+++|+.|+|++|.+++... ..+ ..+++|+.|+|++|+++.... ...+..+++|+.|++++|+++
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGM-HHVLSGCDSLRKLEIRDCPFGDKAL--LANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHH-HHHHHHCTTCCEEEEESCSCCHHHH--HHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHhchhccEeeccCCCCcHHHH-HHHHhcCCCcCEEECcCCCCcHHHH--HHHHHhCCCCCEEeeeCCCCC
Confidence 3443458999999999999865432 133 568999999999999854321 113456899999999999874
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=1.2e-05 Score=78.26 Aligned_cols=128 Identities=13% Similarity=0.187 Sum_probs=86.8
Q ss_pred cCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCC
Q psy18204 15 YTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLE 91 (435)
Q Consensus 15 ~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~ 91 (435)
+..+.+|+.+.+..+ +..+. ..+..+..|+.+.+..+ ++.++ .|.++.+|+.+.+.. .++.++...|.+|++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 344555666666543 33333 44556777888877665 66664 577777888887754 47777777778888888
Q ss_pred eeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecch
Q psy18204 92 TLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKV 150 (435)
Q Consensus 92 ~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n 150 (435)
.+.+.++.++.++. ..|.+|.+|+.+.|..+ ++.+..+ .+..|.+|+.+.+..+
T Consensus 290 ~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 290 KVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY---AFKNCKALSTISYPKS 343 (379)
T ss_dssp EEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT---TTTTCTTCCCCCCCTT
T ss_pred cccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH---HhhCCCCCCEEEECCc
Confidence 88888777777776 47788888888888644 6666665 4567777877777543
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.10 E-value=9.3e-06 Score=79.68 Aligned_cols=125 Identities=14% Similarity=0.250 Sum_probs=92.6
Q ss_pred cceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecC
Q psy18204 20 KDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT 96 (435)
Q Consensus 20 ~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls 96 (435)
.+..+.+. +.+..+. ..+..+..|+.+.+.++.. .++ .|.++++|+.+.+. +.++.|+...|.+|.+|+.+.|.
T Consensus 243 ~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 243 EDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp CCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred ccceEEcC-CcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence 33444443 2344443 4577788899998876543 343 68888899999885 67888888888999999999997
Q ss_pred CCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcCCccceeeecchhHH
Q psy18204 97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 97 ~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
.+ ++.++. ..|.+|.+|+.+.+..+ ++.+..+ .+..|.+|+.+++.++...
T Consensus 320 ~~-v~~I~~-~aF~~C~~L~~i~ip~s-v~~I~~~---aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 320 EG-ITQILD-DAFAGCEQLERIAIPSS-VTKIPES---AFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TT-CCEECT-TTTTTCTTCCEEEECTT-CCBCCGG---GGTTCTTCCEEEESSCHHH
T ss_pred Cc-ccEehH-hHhhCCCCCCEEEECcc-cCEEhHh---HhhCCCCCCEEEECCceee
Confidence 64 777776 48888999999998654 7777765 5678899999999887654
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.05 E-value=1.2e-05 Score=78.19 Aligned_cols=113 Identities=10% Similarity=0.115 Sum_probs=95.2
Q ss_pred ccCCCCcceEEEecCCCccccc-ccccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCC
Q psy18204 14 QYTNPVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNL 90 (435)
Q Consensus 14 ~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L 90 (435)
.|.++..|+.+.+..+ ++.|. ..+..+.+|+.+.+..+ ++.++ .|.++++|+.+.+.++.++.|++..|.+|.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 4677889999999876 66665 56778899999999754 66665 68999999999999999999999999999999
Q ss_pred CeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccc
Q psy18204 91 ETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHY 131 (435)
Q Consensus 91 ~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~ 131 (435)
+.+.|..+ ++.++. ..|.+|.+|+.+.+..+ ++.+..+
T Consensus 313 ~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~-v~~I~~~ 350 (379)
T 4h09_A 313 SSVTLPTA-LKTIQV-YAFKNCKALSTISYPKS-ITLIESG 350 (379)
T ss_dssp CEEECCTT-CCEECT-TTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred CEEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc-cCEEchh
Confidence 99999765 788876 48999999999999765 7777665
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.00 E-value=2.4e-05 Score=76.67 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=59.7
Q ss_pred CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhc
Q psy18204 59 GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK 138 (435)
Q Consensus 59 ~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~ 138 (435)
.|..+.+|+.+.+.++ ++.|++..|.+|.+|+.++|.++ ++.++. ..|.+|.+|+.+.+..| ++.++.. .+..
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~ 364 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKIGAN---AFQG 364 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEECTT---TBTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEehHH---HhhC
Confidence 4566777777777544 77777777777888888887644 666665 47777888888887666 6666654 4567
Q ss_pred CCccceeeecch
Q psy18204 139 LPQVKLLDFSKV 150 (435)
Q Consensus 139 l~~L~~Ldl~~n 150 (435)
|++|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 777887777644
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.92 E-value=7e-05 Score=73.36 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=38.2
Q ss_pred CCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCccccccchHHHHhcC
Q psy18204 60 FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL 139 (435)
Q Consensus 60 l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~~~~l 139 (435)
|.++..|+.+.+.++ +..|....|.++++|+.+.+. +.++.++. ..|.+|.+|+.+.|..+ ++.+..+ .+..|
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~-~aF~~c~~L~~i~lp~~-v~~I~~~---aF~~C 333 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPE-SVFAGCISLKSIDIPEG-ITQILDD---AFAGC 333 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT---TTTTC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCc-eeecCCCCcCEEEeCCc-ccEehHh---HhhCC
Confidence 445555555555322 233444444555555555553 23444443 24555555555555432 4444433 23445
Q ss_pred Cccceeeec
Q psy18204 140 PQVKLLDFS 148 (435)
Q Consensus 140 ~~L~~Ldl~ 148 (435)
.+|+.+.+.
T Consensus 334 ~~L~~i~ip 342 (394)
T 4gt6_A 334 EQLERIAIP 342 (394)
T ss_dssp TTCCEEEEC
T ss_pred CCCCEEEEC
Confidence 555555553
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.81 E-value=6.6e-05 Score=73.54 Aligned_cols=100 Identities=11% Similarity=0.134 Sum_probs=80.3
Q ss_pred cccCCCCCCEEEccCCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCC
Q psy18204 37 MGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPK 114 (435)
Q Consensus 37 ~~~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~ 114 (435)
.+..+.+|+.+.+.++ ++.++ +|.++.+|+.+.+.+ .++.|+...|.+|.+|+.+++..| ++.++. ..|.+|++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGA-NAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECT-TTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehH-HHhhCCCC
Confidence 4556788899988765 77775 689999999999975 499999999999999999999877 888876 58999999
Q ss_pred CCEEEeecCCccccccchHHHHhcCCcccee
Q psy18204 115 LKTLCLLHNPVINRPHYRLYVAFKLPQVKLL 145 (435)
Q Consensus 115 L~~L~L~~N~i~~~~~~~~~~~~~l~~L~~L 145 (435)
|+.+.+..+ ++.+. + .+..+++|+.+
T Consensus 368 L~~i~lp~~-~~~~~-~---~F~~c~~L~~I 393 (394)
T 4fs7_A 368 LKKVELPKR-LEQYR-Y---DFEDTTKFKWI 393 (394)
T ss_dssp CCEEEEEGG-GGGGG-G---GBCTTCEEEEE
T ss_pred CCEEEECCC-CEEhh-h---eecCCCCCcEE
Confidence 999999765 44432 2 35677877754
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=1.7e-05 Score=68.29 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=64.2
Q ss_pred CCcceEEEecCCCccccc-ccccCCCCCCEEEccCCC-CCCcC--CCCCC----CCCCEEEccCCc-cccccchhhcCCC
Q psy18204 18 PVKDRELDLRGYKIPVIE-NMGATLDQFDTIDFSNND-IRKID--GFPLL----KRLSCLFFNNNR-IVRIAENLQENLP 88 (435)
Q Consensus 18 ~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~Ls~N~-l~~l~--~l~~l----~~L~~L~ls~N~-i~~i~~~~~~~l~ 88 (435)
.-+|+.||+++|.|+... ..+..+++|+.|+|++|. |++-. .++.+ ++|+.|+|++|. |+.-.-.....++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 447999999999987432 234679999999999995 76543 45553 479999999985 8854333336799
Q ss_pred CCCeeecCCC-cCCC
Q psy18204 89 NLETLILTGN-NIQE 102 (435)
Q Consensus 89 ~L~~L~Ls~N-~i~~ 102 (435)
+|++|+|+++ .|++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 9999999998 4665
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.51 E-value=0.00015 Score=59.26 Aligned_cols=55 Identities=27% Similarity=0.348 Sum_probs=26.9
Q ss_pred EEEccCCccc--cccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecCCcc
Q psy18204 68 CLFFNNNRIV--RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126 (435)
Q Consensus 68 ~L~ls~N~i~--~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N~i~ 126 (435)
.++.+++.++ .+|..+ .++|+.|+|++|+|+.++. ..|..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence 4444555544 444322 1245555555555555543 34445555555555555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.37 E-value=5.5e-05 Score=66.31 Aligned_cols=118 Identities=12% Similarity=0.059 Sum_probs=80.2
Q ss_pred ccccCCCCCCEEEccCC-CCCCc------CCCCCCCCCCEEEccCCccccccc----hhhcCCCCCCeeecCCCcCCCCC
Q psy18204 36 NMGATLDQFDTIDFSNN-DIRKI------DGFPLLKRLSCLFFNNNRIVRIAE----NLQENLPNLETLILTGNNIQELG 104 (435)
Q Consensus 36 ~~~~~l~~L~~L~Ls~N-~l~~l------~~l~~l~~L~~L~ls~N~i~~i~~----~~~~~l~~L~~L~Ls~N~i~~l~ 104 (435)
.....-+.|+.|+|++| .|..- ..+..-+.|+.|+|++|.|..... ..+..-+.|++|+|++|.|+.-+
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 44555678999999985 77643 246677889999999999985321 22245678999999999997644
Q ss_pred C---CCCCCCCCCCCEEEeecCC---cccccc-chHHHHhcCCccceeeecchhHH
Q psy18204 105 D---LDPLSTLPKLKTLCLLHNP---VINRPH-YRLYVAFKLPQVKLLDFSKVKLK 153 (435)
Q Consensus 105 ~---~~~l~~l~~L~~L~L~~N~---i~~~~~-~~~~~~~~l~~L~~Ldl~~n~l~ 153 (435)
. .+.+..-+.|+.|+|++|. +..... .-..++..-++|+.|+++.|.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2 1245566679999998653 332111 11234567788999999888764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.32 E-value=0.00027 Score=57.66 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=44.8
Q ss_pred CEEEccCCCCC--CcC-CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCcCC
Q psy18204 45 DTIDFSNNDIR--KID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ 101 (435)
Q Consensus 45 ~~L~Ls~N~l~--~l~-~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~i~ 101 (435)
..++.+++.++ .+| +++ ++|+.|+|++|+|+.++.+.|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888888 777 343 46888999999999988888888889999999988774
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.13 E-value=0.00013 Score=63.92 Aligned_cols=110 Identities=8% Similarity=0.115 Sum_probs=79.0
Q ss_pred CCCCcceEEEecCC-Cccc-----ccccccCCCCCCEEEccCCCCCCcC------CCCCCCCCCEEEccCCcccccc---
Q psy18204 16 TNPVKDRELDLRGY-KIPV-----IENMGATLDQFDTIDFSNNDIRKID------GFPLLKRLSCLFFNNNRIVRIA--- 80 (435)
Q Consensus 16 ~~~~~L~~L~L~~n-~i~~-----i~~~~~~l~~L~~L~Ls~N~l~~l~------~l~~l~~L~~L~ls~N~i~~i~--- 80 (435)
.+-+.|++|+|++| .|.. +-..+..-+.|+.|+|++|.|.+.. .+..-+.|+.|+|++|.|+.-.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45568999999986 7763 3344556789999999999998653 2456678999999999999532
Q ss_pred --chhhcCCCCCCeeecCCCcCCCCCC------CCCCCCCCCCCEEEeecCCcc
Q psy18204 81 --ENLQENLPNLETLILTGNNIQELGD------LDPLSTLPKLKTLCLLHNPVI 126 (435)
Q Consensus 81 --~~~~~~l~~L~~L~Ls~N~i~~l~~------~~~l~~l~~L~~L~L~~N~i~ 126 (435)
+.+ ..-+.|++|+|++|....+++ .+.+..-+.|+.|+++.|.+.
T Consensus 118 la~aL-~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRST-LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHT-TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHH-hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 233 556779999999764322221 124555678999999887654
No 165
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=96.33 E-value=0.00066 Score=64.21 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=60.8
Q ss_pred cccccceeecCCccccccchhchhhhhcCCCCcceeEEeecCccccCCcc---chhhhhhceeccccChH----------
Q psy18204 172 DAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGP---GWVMQIAGFLYIERNWD---------- 238 (435)
Q Consensus 172 ~~~~~~~~i~nh~~~lD~l~l~~~~~~~~~~~~~~~~~~lK~~Lk~iP~~---G~~~~~~~~ifl~R~~~---------- 238 (435)
....++++++||++..|...+..............+.+++|.+|...|++ +++ ..++++|.+|...
T Consensus 127 ~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g-~~l~cI~~kk~id~~p~l~r~~~ 205 (367)
T 1iuq_A 127 QQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIG-RNLICVYSKKHMFDIPELTETKR 205 (367)
T ss_dssp HTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHT-SEEEECCCGGGTTSSGGGHHHHH
T ss_pred cCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhh-hheeeEEecccCCCcchhhhhhh
Confidence 35688999999999999888766542211111136889999999988877 555 3367888755433
Q ss_pred -HhHHHHHHHHHHhhcCCCchhhhHHHhhhhcCccCcc
Q psy18204 239 -SDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKE 275 (435)
Q Consensus 239 -~d~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~eG~~ 275 (435)
.+.+++.+..+.+++. +...+.+||||+
T Consensus 206 r~n~ksl~~~~~~Lk~G---------G~sI~IFPEGTR 234 (367)
T 1iuq_A 206 KANTRSLKEMALLLRGG---------SQLIWIAPSGGR 234 (367)
T ss_dssp HHHHHHHHHHHHHHHHC---------CCEEEECTTCSC
T ss_pred HHHHHHHHHHHHHHHcC---------CeEEEEeCCCCC
Confidence 3444444444444332 224677899994
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.39 E-value=1.7 Score=32.98 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=29.2
Q ss_pred CccccccchhhcCCCCCCeeecCCCcCCCCCCCCCCCCCCCCCEEEeecC
Q psy18204 74 NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123 (435)
Q Consensus 74 N~i~~i~~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~l~~L~~L~L~~N 123 (435)
..++.|....|.+|.+|+.+.+-.+ ++.++. ..|.+|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEcCC
Confidence 4455666666666666666666653 555554 36666666666666543
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.75 E-value=5.8 Score=29.96 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=37.6
Q ss_pred CCCCCCcC--CCCCCCCCCEEEccCCccccccchhhcCCCCCCeeecCCCc
Q psy18204 51 NNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN 99 (435)
Q Consensus 51 ~N~l~~l~--~l~~l~~L~~L~ls~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (435)
+..++.++ .|.++++|+.+.+-. .++.|....|.+|.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence 45666775 688888888888865 4788888888899999998887754
Done!