RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18204
(435 letters)
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 132 bits (334), Expect = 1e-36
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 154 ALMNVMFGTEIILSGDSIDAGDQ-ALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLK 212
L + G ++++ GD + AL I NHR+ +DW LW R RLK+VLK
Sbjct: 2 FLFEWLSGVKVVVYGDEPKLPKERALIISNHRSEVDWLVLWMLADRFGR--LGRLKIVLK 59
Query: 213 SPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPVQ------------E 260
+++ P GW Q+ F++++R W+ D++ + QL D P E
Sbjct: 60 DSLKYPPLGGWGWQLGEFIFLKRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEE 119
Query: 261 KQEAAALFKSKKGKELQKEISK-KAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTI 319
K+E + F K G K + + K FV A L+ L + ++AVYD+T+ Y
Sbjct: 120 KKERSQEFAEKNGLPPLKHVLLPRTKGFV--AILETL-----RDAVDAVYDVTIAYPDGK 172
Query: 320 PQSEMDAVHGKFPSQAHFHIK 340
P SE + G P + H H++
Sbjct: 173 PPSEQRLLLGGKPREVHVHVR 193
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 127 bits (322), Expect = 5e-33
Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 37/244 (15%)
Query: 161 GTEIILSGDSIDAGDQALFIMNHRTRLDWNFLW------GCMFHASRPSAHRLKMVLKSP 214
T+++ SGD + ++ L I NHRT +DW +LW GC+ + +K VLKS
Sbjct: 78 KTKVVFSGDKVPPEERVLLIANHRTEVDWMYLWDLALRKGCLGY--------IKYVLKSS 129
Query: 215 IRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDYFHDIQHPV------------QEKQ 262
+ P GW I F+ +ER W+ D+ + + L F D + P+ + K
Sbjct: 130 LMKLPVFGWAFHIFEFIPVERKWEVDEPNIRQMLSSFKDPRDPLWLALFPEGTDYTEAKC 189
Query: 263 EAAALFKSKKG-KELQKEISKKAKTFVPGAALQDLSNIPTGNQLNAVYDITVGYLGTIPQ 321
+ + F ++ G L + K K FV + LQ+L L+AVYD+T+GY P
Sbjct: 190 QRSQKFAAEHGLPILNNVLLPKTKGFV--SCLQELR-----CSLDAVYDVTIGYKHRCP- 241
Query: 322 SEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYF-D 380
S +D V G PS+ H HI++ +P S+ D + AWL + K+ L+ FY +G+F +
Sbjct: 242 SFLDNVFGIDPSEVHIHIRRIPLKQIPTSE-DEVSAWLMDRFQLKDQLLSDFYAQGHFPN 300
Query: 381 GGKE 384
G E
Sbjct: 301 EGTE 304
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 84.0 bits (208), Expect = 8e-18
Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 37/239 (15%)
Query: 175 DQALFIMNHRTRLDWNFLW------GCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIA 228
+ AL I NHR+ +DW W GC+ A V+K + P GW M +
Sbjct: 84 EHALVISNHRSDIDWLVGWILAQRSGCLGSA--------LAVMKKSSKFLPVIGWSMWFS 135
Query: 229 GFLYIERNWDSDQQAMTEQLDYFHDIQHP------------VQEKQEAAALFKSKKGKEL 276
++++ER+W D+ + D P Q K AA + + +G +
Sbjct: 136 EYVFLERSWAKDENTLKSGFQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYAASRGLPV 195
Query: 277 QKEI-SKKAKTFVPGAALQDL-SNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQ 334
+ + + K FV +A+ ++ S +P A+YD+TV P M + S
Sbjct: 196 PRNVLIPRTKGFV--SAVSNMRSFVP------AIYDVTVAVPKGQPAPTMLRIFRGQSSV 247
Query: 335 AHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKEAHLNRFYDKGYFDGGKESRSKQPISP 393
H HIK++S LP +D D + W ++ K+A L++ + + F + +P
Sbjct: 248 VHVHIKRHSMKELPETD-DGIAQWCKDVFVAKDALLDKHFAEDTFGDQEYQDIGRPKKS 305
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 54.7 bits (132), Expect = 2e-09
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 177 ALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERN 236
AL + NH++ LD L + R++ V K + + P GW++++ G ++I+R+
Sbjct: 1 ALVVANHQSFLDPLVLSALL----PRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRS 56
Query: 237 WD-SDQQAMTEQLD 249
+ A+ E ++
Sbjct: 57 NGRKARAALREAVE 70
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 48.8 bits (117), Expect = 4e-07
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 169 DSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIA 228
+++ G A+ + NH++ LD L + RP L V K + + P GW+M++
Sbjct: 8 ENLPRGGPAIVVANHQSYLDPLLLSLLLPKRGRP----LVFVAKDELLNLPLLGWLMRLL 63
Query: 229 GFLYIERNWDSDQQAMTEQLDY 250
G ++I+R + + L+Y
Sbjct: 64 GCIFIDR---KNAKDAANTLEY 82
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 43.3 bits (103), Expect = 5e-06
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 46 TIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
++D SNN + I L L L + N + I+ LP+L +L L+GNN+
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 42.9 bits (102), Expect = 8e-06
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 65 RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
L L +NNR+ I + + LPNL+ L L+GNN+ + + S LP L++L L N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSI-SPEAFSGLPSLRSLDLSGNN 59
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 47.7 bits (113), Expect = 8e-06
Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 11/159 (6%)
Query: 15 YTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK-IDGFPLLKRLSCLFFNN 73
+N LDL G KI + L + +D SNN I + + LK LS L +N
Sbjct: 182 LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN 241
Query: 74 NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRL 133
N++ + E++ NL NLETL L+ N I + L +L L+ L L N + N
Sbjct: 242 NKLEDLPESIG-NLSNLETLDLSNNQIS---SISSLGSLTNLRELDLSGNSLSNALPLIA 297
Query: 134 YVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSID 172
+ L LL+ IL ++I
Sbjct: 298 LL--LLLLELLLNLLLTLKALE----LKLNSILLNNNIL 330
Score = 46.9 bits (111), Expect = 1e-05
Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIA 80
+ELDL KI + + L +D S ND+ + L L+ L + N+I +
Sbjct: 143 KELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDL- 201
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
E L LE L L+ N+I EL L LS L L L L +N + + P + L
Sbjct: 202 PPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSNNKLEDLP---ESIG-NLS 255
Query: 141 QVKLLDFSK 149
++ LD S
Sbjct: 256 NLETLDLSN 264
Score = 43.4 bits (102), Expect = 2e-04
Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 18/142 (12%)
Query: 16 TNPVKDRELDLRGYKIPVIENMGA-----TLDQFDTIDFSNNDIRK----IDGFPLLKRL 66
R L L I ++ L ++D + N +R + L L
Sbjct: 62 LPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSL 121
Query: 67 SCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126
+NN I I + NL+ L L+ N I+ L PL LP LK L L N +
Sbjct: 122 DL---DNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLS 176
Query: 127 NRPHYRLYVAFKLPQVKLLDFS 148
+ P + L + LD S
Sbjct: 177 DLP----KLLSNLSNLNNLDLS 194
Score = 40.3 bits (94), Expect = 0.002
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLL--KRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
L ++D NN+I I L L L ++N+I + L NLPNL+ L L+ N
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFN 173
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHN 123
++ +L L LS L L L L N
Sbjct: 174 DLSDLPKL--LSNLSNLNNLDLSGN 196
Score = 32.6 bits (74), Expect = 0.36
Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 10/90 (11%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
L +T+D SNN I I L L L + N + L + L
Sbjct: 252 GNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSL----------SNALPLIALLLL 301
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHNPVINR 128
++ L +L +LK +L N I
Sbjct: 302 LLELLLNLLLTLKALELKLNSILLNNNILS 331
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 41.3 bits (98), Expect = 2e-05
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 88 PNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
NLETL L+ N I DL PLS LP L+TL L N +
Sbjct: 1 TNLETLDLSNNQIT---DLPPLSNLPNLETLDLSGNKI 35
Score = 30.2 bits (69), Expect = 0.18
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
T+D SNN I + L L L + N+I +
Sbjct: 5 TLDLSNNQITDLPPLSNLPNLETLDLSGNKITDL 38
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 41.4 bits (97), Expect = 5e-04
Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 22/135 (16%)
Query: 109 LSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSG 168
+ L L L+ + RP R ++ F L L+ ++FG + + G
Sbjct: 11 ILFLLLPLPLALIALFRLRRPVLRRWLRF--------------LVLLLLLLFGLRVEVEG 56
Query: 169 DS-IDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKM-VLKSPIRHAPGPGWVMQ 226
+ G AL + NH++ LD L P K + K P+ GW+++
Sbjct: 57 LENLPKGGPALVVANHQSFLDP-LLLSLALPRRGPVRFVAKKELFKVPLL-----GWLLR 110
Query: 227 IAGFLYIERNWDSDQ 241
+ G + ++R D+
Sbjct: 111 LLGAIPVDRENPDDE 125
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 39.6 bits (93), Expect = 0.001
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 152 LKALMNVMFGTEIILSG-DSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMV 210
L+ L+ + G + + G +++ + + NH++ LD + G ++ V
Sbjct: 1 LRLLL-RLLGVRVRVEGLENLPPKGPVIIVANHQSYLDP-LVLGAALP------RPIRFV 52
Query: 211 LKSPIRHAPGPGWVMQIAGFLYIER-NWDSDQQAM 244
K + P GW++++ G + I+R N S ++A+
Sbjct: 53 AKKELFKIPFLGWLLRLLGAIPIDRGNGRSAREAL 87
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 34.6 bits (80), Expect = 0.078
Identities = 28/117 (23%), Positives = 41/117 (35%), Gaps = 23/117 (19%)
Query: 44 FDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
++ +NN I G L AE L+ N NLE L L N + +
Sbjct: 167 LKELNLANNGIGD-AGIRAL----------------AEGLKAN-CNLEVLDLNNNGLTDE 208
Query: 104 GDLD---PLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKL--LDFSKVKLKAL 155
G L++L L+ L L N + + L A P + L L S +
Sbjct: 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265
Score = 31.9 bits (73), Expect = 0.58
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFF------NNN----RIVRI-AENLQENLPNLETLI 94
+D S+N + DG +L+ L NNN R +R+ A+ L++ P LE L+
Sbjct: 85 ELDLSDNAL-GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143
Query: 95 LTGNNIQELGDLDPLSTL----PKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLD 146
L N + E + L+ LK L L +N + + L K +++LD
Sbjct: 144 LGRNRL-EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 34.4 bits (80), Expect = 0.091
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 19/85 (22%)
Query: 302 GNQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAHFHIKKYSTDSLPVSDTD-------- 353
G Q + + D+T+ Y P S D + G+ + H++ LP+ +
Sbjct: 217 GEQFDGLLDVTIVYPDGRP-SFWDLLSGR-VKKIVVHVRL-----LPIPEELIGDYFNDK 269
Query: 354 ----AMKAWLNQIWAEKEAHLNRFY 374
+ WLNQ+W EK+ + +
Sbjct: 270 EFRRRFQQWLNQLWQEKDQLIEQLL 294
>gnl|CDD|221740 pfam12732, YtxH, YtxH-like protein. This family of proteins is
found in bacteria. Proteins in this family are typically
between 100 and 143 amino acids in length. The
N-terminal region is the most conserved. Proteins is
this family are functionally uncharacterized.
Length = 66
Score = 31.4 bits (72), Expect = 0.10
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 264 AAALFKSKKGKELQKEISKKAKTF 287
A L K GKE +K++ KAK
Sbjct: 15 AGLLLAPKSGKETRKKLKDKAKDL 38
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 28.5 bits (65), Expect = 0.45
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 87 LPNLETLILTGNNIQEL 103
LPNL L L+ N + L
Sbjct: 1 LPNLRELDLSNNQLSSL 17
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 28.5 bits (65), Expect = 0.45
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 87 LPNLETLILTGNNIQEL 103
LPNL L L+ N + L
Sbjct: 1 LPNLRELDLSNNQLSSL 17
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 30.8 bits (70), Expect = 0.81
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 10/75 (13%)
Query: 178 LFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNW 237
LF+ NH + D L+ + R + ++ G ++R+
Sbjct: 29 LFVSNHSSWWDGLILFLLLERGLR---RDVYGLMD---EELLERYPFFTRLGAFSVDRDS 82
Query: 238 D----SDQQAMTEQL 248
+ + L
Sbjct: 83 PRSAAKSLKYVARLL 97
>gnl|CDD|221411 pfam12078, DUF3557, Domain of unknown function (DUF3557). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 150
amino acids in length.
Length = 153
Score = 30.3 bits (69), Expect = 0.89
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 69 LFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPL---STLPKLKTLCL----- 120
L + I+RI NL+ + NLE + N + L L PL S+LP LK+L +
Sbjct: 26 LSISCKGILRIPSNLKLKVKNLE--LSGSNTDKILEALRPLLDNSSLP-LKSLEVTFDVS 82
Query: 121 -LHNPVIN 127
+P++
Sbjct: 83 NFDHPIVQ 90
>gnl|CDD|197729 smart00446, LRRcap, occurring C-terminal to leucine-rich repeats.
A motif occurring C-terminal to leucine-rich repeats in
"sds22-like" and "typical" LRR-containing proteins.
Length = 19
Score = 26.5 bits (60), Expect = 2.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 128 RPHYRLYVAFKLPQVKLLD 146
HYR V LPQ++ LD
Sbjct: 1 LAHYREKVIELLPQLRKLD 19
>gnl|CDD|224816 COG1904, UxaC, Glucuronate isomerase [Carbohydrate transport and
metabolism].
Length = 463
Score = 30.0 bits (68), Expect = 3.0
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 13/65 (20%)
Query: 237 WDSDQQAMTEQLDYFH-------DIQHPVQE-----KQEAAALF-KSKKGKELQKEISKK 283
WD A+ ++ +YF D + + +A A+F K G+ L E +++
Sbjct: 211 WDGYLDALRKRREYFKSHGATSSDHGLDTADTAELSEADADAIFDKRLAGEALSTEEAEQ 270
Query: 284 AKTFV 288
K +
Sbjct: 271 FKAAM 275
>gnl|CDD|214354 CHL00074, rps14, ribosomal protein S14.
Length = 100
Score = 27.8 bits (63), Expect = 3.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 401 IKEAISKASSLEEIERLNKLLQS 423
+K+ I K SSL E ++ LQS
Sbjct: 27 LKKEIKKVSSLSEKWEIHGKLQS 49
>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
putative bacterial glycerol kinases (GK), which may be
coded by the GK-like gene, GK2. Sequence comparison
shows members in this CD are homologs of Escherichia
coli GK. They retain all functionally important
residues, and may catalyze the Mg-ATP dependent
phosphorylation of glycerol to yield glycerol
3-phosphate (G3P). GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 484
Score = 29.3 bits (66), Expect = 4.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 214 PIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLD 249
I++ P PGWV Q A E W + QQA+ + L
Sbjct: 32 GIQY-PQPGWVEQDA-----EAIWAAVQQAIADCLA 61
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 28.5 bits (65), Expect = 6.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 16/43 (37%)
Query: 391 ISPSAEEVW-------KIKEAISKASSLEEIERLNKLLQSGQI 426
I P+AEEVW K+KE + EE + LL+ GQI
Sbjct: 57 IVPTAEEVWAKADLIVKVKEPL-----PEEYD----LLREGQI 90
>gnl|CDD|165190 PHA02852, PHA02852, putative virion structural protein;
Provisional.
Length = 153
Score = 27.6 bits (61), Expect = 8.1
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 55 RKIDGFPLLKRL--SCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTL 112
+ ++G P + + F+N I R+ + + +N P + LI N+ E L+PL L
Sbjct: 35 KNLNGLPFKAHIYNNVSRFDNKTIFRVVKYVYKNRPKILKLIFPNNSFFE--SLEPL--L 90
Query: 113 PKLKTLCLLHNPVIN 127
P +KT+ L +N IN
Sbjct: 91 P-VKTINLSYNNTIN 104
>gnl|CDD|179327 PRK01732, rnpA, ribonuclease P; Reviewed.
Length = 114
Score = 26.8 bits (60), Expect = 9.6
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 74 NRIVRIAE----NLQENLPNLETLILTGNNIQELGDLDPLSTLPKL 115
NRI R+ Q LP ++ +++ + +L + + L KL
Sbjct: 63 NRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKL 108
>gnl|CDD|217143 pfam02614, UxaC, Glucuronate isomerase. This is a family of
Glucuronate isomerases also known as D-glucuronate
isomerase, uronic isomerase, uronate isomerase, or
uronic acid isomerase, EC:5.3.1.12. This enzyme
catalyzes the reactions: D-glucuronate <=>
D-fructuronate and D-galacturonate <=> D-tagaturonate.
It is not however clear where the experimental evidence
for this functional assignment came from and thus this
family has no literature reference.
Length = 469
Score = 28.3 bits (64), Expect = 9.8
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 235 RNWDSDQQAMTEQLDYF---------HDIQHPVQE---KQEAAALF-KSKKGKELQKEIS 281
++D +A+ +++D+F H + V ++EA A+F K+ G+ L E
Sbjct: 212 TSFDDFLEALEKRIDFFHELGCRASDHGLDTVVYAEASEEEADAIFAKALSGEPLTPEEI 271
Query: 282 KKAKTFV 288
+K KT +
Sbjct: 272 EKFKTAM 278
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,572,905
Number of extensions: 2204658
Number of successful extensions: 2086
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2056
Number of HSP's successfully gapped: 43
Length of query: 435
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 335
Effective length of database: 6,502,202
Effective search space: 2178237670
Effective search space used: 2178237670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)