RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18204
(435 letters)
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 196 bits (501), Expect = 1e-61
Identities = 107/153 (69%), Positives = 126/153 (82%)
Query: 1 MVKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF 60
MVKLTA+LI Q QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGF
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
PLL+RL L NNNRI RI E L + LP+L LILT N++ ELGDLDPL++L L LC+
Sbjct: 61 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120
Query: 121 LHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
L NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct: 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153
Score = 30.8 bits (70), Expect = 0.53
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 246 EQLDYFHDIQHPV--QEKQEAAALFKSKKGKELQKEISK 282
LD+ V +E+QEA +FK K+G +L K+I++
Sbjct: 143 RVLDF-----QKVKLKERQEAEKMFKGKRGAQLAKDIAR 176
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 162 bits (412), Expect = 1e-48
Identities = 42/140 (30%), Positives = 64/140 (45%)
Query: 14 QYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNN 73
+ V++ LD IE + A + + N + + P L +L L +
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSE 80
Query: 74 NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRL 133
NRI + L E LPNL L L+GN ++++ L+PL L LK+L L + V N YR
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE 140
Query: 134 YVAFKLPQVKLLDFSKVKLK 153
V LPQ+ LD + +
Sbjct: 141 SVFKLLPQLTYLDGYDREDQ 160
Score = 31.6 bits (72), Expect = 0.24
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
E + L+L + + L+ L L++
Sbjct: 14 IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV 59
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 159 bits (403), Expect = 2e-47
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Query: 3 KLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL 62
++ +L + + VK+ LD +E + ++ + + N + I P
Sbjct: 6 RIHLELR---NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK 62
Query: 63 LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
L +L L ++NR+ E L E PNL L L+GN I++L ++PL L LK+L L +
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
Query: 123 NPVINRPHYRLYVAFKLPQVKLLD 146
V N YR V LPQ+ LD
Sbjct: 123 CEVTNLNDYRENVFKLLPQLTYLD 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 108 bits (272), Expect = 6e-28
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGF-PLLKRLSCLFFNNNRIVRIA 80
+ L L I I ++ ++ + N I+KI+ + L L+ + N+I +
Sbjct: 51 KHLALSTNNIEKISSLS-GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL- 108
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR-------PHYRL 133
+ E L NL L ++ N I G++D L+ L KL+ L L NP+ N YR+
Sbjct: 109 SGI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167
Query: 134 YVAFKLPQVKLLDFSKVK 151
V +LP +K LD V
Sbjct: 168 EVVKRLPNLKKLDGMPVD 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 102 bits (256), Expect = 8e-24
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 8 LIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRL 66
L+ + R L L + V+ ++ L +D S+N +R + L+ L
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ-LLLVTHLDLSHNRLRALPPALAALRCL 488
Query: 67 SCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126
L ++N + + + + NLP L+ L+L N +Q+ + PL + P+L L L N +
Sbjct: 489 EVLQASDNALENV-DGV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
Query: 127 NRPHYRLYVAFKLPQVKLLD 146
+ +A LP V +
Sbjct: 547 QEEGIQERLAEMLPSVSSIL 566
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 88.6 bits (220), Expect = 7e-20
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 6/136 (4%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ L L I I + L Q +++ NN I I L +L L +N+I I
Sbjct: 115 KSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-V 172
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
L L L+ L L+ N+I DL L+ L L L L +N+P
Sbjct: 173 PL-AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228
Query: 142 VKLLDFSKVKLKALMN 157
VK D S V + + +
Sbjct: 229 VKNTDGSLVTPEIISD 244
Score = 75.5 bits (186), Expect = 2e-15
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+L L G K+ I+ + A L + N ++ + LK+L L +N I I
Sbjct: 71 TKLFLNGNKLTDIKPL-ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-N 128
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
L +LP LE+L L N I D+ LS L KL TL L N +
Sbjct: 129 GL-VHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQI 168
Score = 72.0 bits (177), Expect = 3e-14
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 20/134 (14%)
Query: 4 LTADLIVQCMQYTNPVKD----------RELDLRGYKIPVIENMGATLDQFDTIDFSNND 53
L ++ I P+K + +L+ + L+ D I +N+D
Sbjct: 3 LGSETITVP----TPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSD 57
Query: 54 IRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLP 113
I+ + G L ++ LF N N++ I + L NL NL L L N ++ DL L L
Sbjct: 58 IKSVQGIQYLPNVTKLFLNGNKLTDI-KPL-ANLKNLGWLFLDENKVK---DLSSLKDLK 112
Query: 114 KLKTLCLLHNPVIN 127
KLK+L L HN + +
Sbjct: 113 KLKSLSLEHNGISD 126
Score = 46.2 bits (110), Expect = 8e-06
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 1/95 (1%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L L +I I + A L + + S N I + LK L L + +
Sbjct: 159 DTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 217
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLK 116
N Q NL T+ T ++ + K
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 252
Score = 30.4 bits (69), Expect = 0.96
Identities = 7/68 (10%), Positives = 18/68 (26%), Gaps = 8/68 (11%)
Query: 88 PNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDF 147
P I I+ + + L V + +L + +
Sbjct: 2 PLGSETITVPTPIK---QIFSDDAFAETIKDNLKKKSVTDAVTQN-----ELNSIDQIIA 53
Query: 148 SKVKLKAL 155
+ +K++
Sbjct: 54 NNSDIKSV 61
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 87.1 bits (215), Expect = 1e-18
Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 6/167 (3%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ L L I I + L Q +++ NN I I L +L L +N+I I
Sbjct: 112 KSLSLEHNGISDINGL-VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-V 169
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
L L L+ L L+ N+I DL L+ L L L L +N+P
Sbjct: 170 PLA-GLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225
Query: 142 VKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLD 188
VK D S V + + + + + + ++ FI +
Sbjct: 226 VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272
Score = 75.5 bits (185), Expect = 8e-15
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+L L G K+ I+ + L + N I+ + LK+L L +N I I
Sbjct: 68 TKLFLNGNKLTDIKPL-TNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-N 125
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
L +LP LE+L L N I D+ LS L KL TL L N +
Sbjct: 126 GL-VHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQI 165
Score = 74.0 bits (181), Expect = 2e-14
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ +L+ + L+ D I +N+DI+ + G L ++ LF N N++ I +
Sbjct: 24 IKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-K 81
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
L NL NL L L N I+ DL L L KLK+L L HN + +
Sbjct: 82 PL-TNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISD 123
Score = 59.4 bits (143), Expect = 1e-09
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 50 SNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPL 109
+ I++I + Q L +++ +I ++I+ + +
Sbjct: 7 VSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGI 61
Query: 110 STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
LP + L L N + + + L + L + K+K L
Sbjct: 62 QYLPNVTKLFLNGNKLTD-----IKPLTNLKNLGWLFLDENKIKDL 102
Score = 49.7 bits (118), Expect = 1e-06
Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 6/157 (3%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L L +I I + A L + + S N I + LK L L + +
Sbjct: 156 DTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPI 214
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
N Q NL T+ T ++ + K H P ++
Sbjct: 215 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV--KWHLPEFTNEVSFIFYQPVTIG 272
Query: 142 VKLLDFSKVKLKALM---NVMFGTEIILSGDSIDAGD 175
F + L V + + + ++AG
Sbjct: 273 KAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGT 309
Score = 41.6 bits (97), Expect = 4e-04
Identities = 5/55 (9%), Positives = 15/55 (27%), Gaps = 5/55 (9%)
Query: 69 LFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ I +I + L ++ D + L + + ++
Sbjct: 4 TITVSTPIKQI-FPD-DAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS 53
Score = 33.9 bits (77), Expect = 0.10
Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 8/66 (12%)
Query: 90 LETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSK 149
+ I I+ + P + L V + +L + + +
Sbjct: 1 MGETITVSTPIK---QIFPDDAFAETIKDNLKKKSVTDAVTQN-----ELNSIDQIIANN 52
Query: 150 VKLKAL 155
+K++
Sbjct: 53 SDIKSV 58
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 80.8 bits (200), Expect = 2e-17
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 7/134 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
EL + ++ + + + + NN++R D LK L L NN++ I
Sbjct: 88 EELSVNRNRLKNLNGIPSA--CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-V 144
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
L L LE L L GN I + L+ L K+ + L +N P +
Sbjct: 145 ML-GFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200
Query: 142 VKLLDFSKVKLKAL 155
VK D + +
Sbjct: 201 VKDPDGRWISPYYI 214
Score = 70.8 bits (174), Expect = 5e-14
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 21/120 (17%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ +L + + + L + N++I+ + G L L ++N+I +
Sbjct: 22 VKQNLGKQSVTDLVSQ-KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL-S 79
Query: 82 NLQENLPNLETLILTGNNIQELG------------------DLDPLSTLPKLKTLCLLHN 123
L ++L LE L + N ++ L D D L L L+ L + +N
Sbjct: 80 PL-KDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN 138
Score = 65.0 bits (159), Expect = 4e-12
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 23 ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAEN 82
E R I + L + + + L + +N+ I +
Sbjct: 1 ESIQRPTPINQVFPD-PGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AG 58
Query: 83 LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
+ + NL+ L L+ N I DL PL L KL+ L + N + N
Sbjct: 59 M-QFFTNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRNRLKN 99
Score = 43.1 bits (102), Expect = 9e-05
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 10/84 (11%)
Query: 72 NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHY 131
I ++ L N L ++ DL L ++ ++ + +
Sbjct: 5 RPTPINQV-FPD-PGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQS---- 55
Query: 132 RLYVAFKLPQVKLLDFSKVKLKAL 155
L +K L S ++ L
Sbjct: 56 -LAGMQFFTNLKELHLSHNQISDL 78
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 77.7 bits (191), Expect = 2e-16
Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 9/148 (6%)
Query: 5 TADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLK 64
+ + M + LDL+G + + +R I+ +
Sbjct: 113 QVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEE--NIP 170
Query: 65 RLSCLFFNNNRIVRIA--ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
L L +NNR+ R+ ++ + PNL+ L L+GN ++ +LD + L L+ L L
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDG 229
Query: 123 NPV----INRPHYRLYVAFKLPQVKLLD 146
N + ++ Y + + P++ LD
Sbjct: 230 NSLCDTFRDQSTYISAIRERFPKLLRLD 257
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 77.4 bits (191), Expect = 5e-16
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 6/136 (4%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ L L +I I + A L + N + + L +L+ L ++N+I I
Sbjct: 132 QVLYLDLNQITNISPL-AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI-S 189
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
L +LPNL + L N I D+ PL+ L + L + + N+P +
Sbjct: 190 PL-ASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245
Query: 142 VKLLDFSKVKLKALMN 157
VK + + + +
Sbjct: 246 VKGPSGAPIAPATISD 261
Score = 73.6 bits (181), Expect = 9e-15
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L G + IE + L+ ++ +N I + L +++ L + N + +
Sbjct: 44 TTLSAFGTGVTTIEGVQY-LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV-S 101
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
+ L +++TL LT I D+ PL+ L L+ L L N + N
Sbjct: 102 AI-AGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQITN 143
Score = 67.8 bits (166), Expect = 9e-13
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 23 ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAEN 82
++ + A LD T+ + I+G L L L +N+I +
Sbjct: 23 KIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL-AP 80
Query: 83 LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
L +NL + L L+GN ++ ++ ++ L +KTL L + +
Sbjct: 81 L-KNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITD 121
Score = 42.0 bits (99), Expect = 2e-04
Identities = 16/92 (17%), Positives = 23/92 (25%), Gaps = 7/92 (7%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L KI I + A+L + NN I + L + N I
Sbjct: 176 TTLKADDNKISDISPL-ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPV 234
Query: 82 NLQENLP------NLETLILTGNNIQELGDLD 107
NL + I + G
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATISDNGTYA 266
Score = 32.0 bits (73), Expect = 0.36
Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
E+ L+ +I + + A + +N I F + IA
Sbjct: 198 IEVHLKNNQISDVSPL-ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP 256
Query: 82 NLQENLPNLETLILTGNNIQELGDLD 107
+ + LT N + ++
Sbjct: 257 ATISDNGTYASPNLTWNLTSFINNVS 282
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 71.1 bits (175), Expect = 1e-14
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ L + + + + +N + L L L +
Sbjct: 47 TYITLANINVTDLTGI-EYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI 105
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
L +L L ++ + + L ++TLPK+ ++ L +N I
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAIT 150
Score = 68.1 bits (167), Expect = 2e-13
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
++ I +N ++ + G + L NN + L NLE L + G ++
Sbjct: 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPI-SGLSNLERLRIMGKDV 100
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSK 149
+ LS L L L + H+ + ++ LP+V +D S
Sbjct: 101 TSD-KIPNLSGLTSLTLLDISHSAHDDSILTKIN---TLPKVNSIDLSY 145
Score = 60.0 bits (146), Expect = 9e-11
Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 22 RELDLRGYKI--PVIENMGATLDQFDTIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIV 77
L + G + I N+ + L +D S++ + L +++ + + N +
Sbjct: 91 ERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
L + LP L++L + + + D + PKL L +
Sbjct: 150 TDIMPL-KTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTI 193
Score = 46.5 bits (111), Expect = 3e-06
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 4/84 (4%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFS-NNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
LD+ TL + ++ID S N I I L L L + +
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY 174
Query: 80 AENLQENLPNLETLILTGNNIQEL 103
+ E+ P L L I
Sbjct: 175 -RGI-EDFPKLNQLYAFSQTIGGK 196
Score = 42.3 bits (100), Expect = 8e-05
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 57 IDGFPL--LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPK 114
P K + I + + +L + L N+ DL +
Sbjct: 14 NVNIPDSTFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVT---DLTGIEYAHN 67
Query: 115 LKTLCLLHN 123
+K L + +
Sbjct: 68 IKDLTINNI 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 74.5 bits (183), Expect = 2e-14
Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 12/177 (6%)
Query: 22 RELDLRGYKIPVIEN---MGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRI 76
+ I + G +D S+ + ++ F LK L L N+I
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302
Query: 77 VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
+IA+ L NL+ L L+ N + EL + LPK+ + L N +
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQ----T 357
Query: 137 FK-LPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFL 192
FK L +++ LD L + + +I LSG+ + + + + L N L
Sbjct: 358 FKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL-VTLPKINLTANLIHLSENRL 413
Score = 63.3 bits (154), Expect = 8e-11
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 7/145 (4%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRI- 76
+ L+L P+ + A L +D ++ I + D F L L L +
Sbjct: 51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110
Query: 77 -VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYV 135
+ + NL L L L+ N I+ L L LK++ + I
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI-DFSSNQIFLVCEHELE 169
Query: 136 AFKLPQVKLLDFSKVKLKALMNVMF 160
+ + + L + ++V +
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDW 194
Score = 57.9 bits (140), Expect = 4e-09
Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 33/201 (16%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80
+DL+ I +I + L++ T+D +N + I P + +F + N++V +
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP---SIPDIFLSGNKLVTLP 397
Query: 81 E--------NLQEN-------------LPNLETLILTGNNIQELGDLDPLSTLPKLKTLC 119
+ +L EN +P+L+ LIL N S P L+ L
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457
Query: 120 LLHNP--VINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSID 172
L N + V L +++L + L +L +F + L+ + +
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Query: 173 AGDQALFIMNHRT-RLDWNFL 192
N + N L
Sbjct: 518 VLSHNDLPANLEILDISRNQL 538
Score = 56.0 bits (135), Expect = 1e-08
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
+ ++ ++ +L L + N I + + L L+ L L D
Sbjct: 8 IAFYRFCNLTQV--PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 106 LDPLSTLPKLKTLCLLHNP 124
+ LP L+ L L +
Sbjct: 66 KEAFRNLPNLRILDLGSSK 84
Score = 48.3 bits (115), Expect = 4e-06
Identities = 29/187 (15%), Positives = 54/187 (28%), Gaps = 29/187 (15%)
Query: 22 RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNR 75
EL L + + L +D S N IR + F L L + F++N+
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159
Query: 76 IVRIAENLQENL--PNLETLILTGNNIQELGDLDPLSTLPKLKTLCL----LHNPVINRP 129
I + E+ E L L L N++ +D + + + L +
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219
Query: 130 HYRL----------YVAFKLPQVKLLDFSKVKLKALMNVMFG-------TEIILSGDSID 172
+ + F +K F + LS +
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279
Query: 173 AGDQALF 179
+ + +F
Sbjct: 280 SLNSRVF 286
Score = 46.3 bits (110), Expect = 2e-05
Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 8/128 (6%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80
+ L L + + + + L + ++N + + L L L + N+++
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN 542
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
+ +L L +T N +L + + P Y
Sbjct: 543 PD---VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDS----FS 595
Query: 141 QVKLLDFS 148
V L S
Sbjct: 596 GVSLFSLS 603
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 72.8 bits (179), Expect = 5e-14
Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 15/164 (9%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
+LD+ KI ++ + L +++ +ND+ I F L L L +
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK 138
I +L L L L NI + D L +LK L + H P ++
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMT---PNCLY 222
Query: 139 LPQVKLLDFSKVKLKALMNVMFG-----TEIILSG---DSIDAG 174
+ L + L A+ + + LS +I+
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266
Score = 68.6 bits (168), Expect = 1e-12
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 9/143 (6%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
R LDL +I + ++ A+ + ++ + N + ++ F L L L +NR+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK 138
I + L NL L ++ N I L D L LK+L + N ++ H AF
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHR----AFS 149
Query: 139 -LPQVKLLDFSKVKLKALMNVMF 160
L ++ L K L ++
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEAL 172
Score = 67.0 bits (164), Expect = 4e-12
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
L + + + + L ++ S N I I+G L RL + ++
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
+ L L L ++GN + L + ++ L+TL L NP
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLETLILDSNP 331
Score = 64.4 bits (157), Expect = 2e-11
Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 22 RELDLRGYK-IPVIENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
+ L++ + + + ++ ++ ++ + L L L + N I
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
I ++ L L+ + L G + + + L L+ L + N
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGN 306
Score = 54.3 bits (131), Expect = 4e-08
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIV 77
R L+L I IE L + I + ++ F L L L + N++
Sbjct: 251 RFLNLSYNPISTIEG-SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Query: 78 RIAENLQENLPNLETLILTGNNIQ 101
+ E++ ++ NLETLIL N +
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLA 333
Score = 48.9 bits (117), Expect = 2e-06
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 46 TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
+ + +G P L NRI + ++ + P+LE L L N + +
Sbjct: 15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72
Query: 105 DLDPLSTLPKLKTLCLLHN 123
+ L L+TL L N
Sbjct: 73 P-GAFNNLFNLRTLGLRSN 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 69.9 bits (172), Expect = 2e-13
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+L + G K+ I+ + L + ++ + N I I L +L+ L+ N+I I
Sbjct: 47 TKLVVAGEKVASIQGIE-YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI-S 104
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
L +NL NL L L +NI D+ PL+ L K+ +L L N ++ +
Sbjct: 105 AL-QNLTNLRELYLNEDNIS---DISPLANLTKMYSLNLGANHNLSDLS----PLSNMTG 156
Query: 142 VKLLDFSKVKLKAL 155
+ L ++ K+K +
Sbjct: 157 LNYLTVTESKVKDV 170
Score = 69.9 bits (172), Expect = 2e-13
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L + KI I + L + + ++I I L ++ L N +
Sbjct: 91 TNLYIGTNKITDISALQ-NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS 149
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
L N+ L L +T + ++ D+ P++ L L +L L +N
Sbjct: 150 PL-SNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYN 187
Score = 69.5 bits (171), Expect = 3e-13
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L L +I I + +L N I I + RL+ L NN+I +
Sbjct: 180 YSLSLNYNQIEDISPLA-SLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL-S 237
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
L NL L L + N I D++ + L KLK L + N
Sbjct: 238 PL-ANLSQLTWLEIGTNQIS---DINAVKDLTKLKMLNVGSN 275
Score = 68.7 bits (169), Expect = 5e-13
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L + K+ + + L ++ + N I I L L N+I I
Sbjct: 158 NYLTVTESKVKDVTPIA-NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-T 215
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ N+ L +L + N I DL PL+ L +L L + N
Sbjct: 216 PV-ANMTRLNSLKIGNNKIT---DLSPLANLSQLTWLEIGTN 253
Score = 68.7 bits (169), Expect = 6e-13
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L++ +I I + L + ++ +N I I L +L+ LF NNN++
Sbjct: 246 TWLEIGTNQISDINAVK-DLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
+ L NL TL L+ N+I D+ PL++L K+ + + +
Sbjct: 305 EVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVI 345
Score = 65.6 bits (161), Expect = 6e-12
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 23 ELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAEN 82
L I I A L + + + L+ ++ L ++ I +
Sbjct: 4 TLATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI-QG 61
Query: 83 LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ E L NLE L L GN I D+ PLS L KL L + N
Sbjct: 62 I-EYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTN 98
Score = 65.3 bits (160), Expect = 7e-12
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 9/127 (7%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+I I + + + +++ NN I + L +L+ L N+I I
Sbjct: 202 HYFTAYVNQITDITPVA-NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-N 259
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
+ ++L L+ L + N I D+ L+ L +L +L L +N + N + L
Sbjct: 260 AV-KDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDMEVI---GGLTN 312
Query: 142 VKLLDFS 148
+ L S
Sbjct: 313 LTTLFLS 319
Score = 63.7 bits (156), Expect = 2e-11
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFS-NNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80
REL L I I + L + +++ N+++ + + L+ L +++ +
Sbjct: 113 RELYLNEDNISDISPLA-NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV- 170
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ NL +L +L L N I+ D+ PL++L L N
Sbjct: 171 TPI-ANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVN 209
Score = 47.5 bits (114), Expect = 4e-06
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRI 79
+ L++ +I I + L Q +++ +NN + D + L L+ LF + N I I
Sbjct: 268 KMLNVGSNQISDISVLN-NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Query: 80 AENLQENLPNLETLILTGNNIQE 102
L +L +++ I++
Sbjct: 327 -RPL-ASLSKMDSADFANQVIKK 347
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 70.0 bits (172), Expect = 4e-13
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
LD+ K+ I + L +++ +NN I I +L L L N N++ I
Sbjct: 180 ERLDISSNKVSDISVLA-KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT 238
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV 125
+L NL L L N I +L PLS L KL L L N +
Sbjct: 239 --LASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQI 277
Score = 69.2 bits (170), Expect = 7e-13
Identities = 35/102 (34%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L I I+ + L+ I+FSNN + I L +L + NNN+I I
Sbjct: 49 TTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-T 106
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
L NL NL L L N I D+DPL L L L L N
Sbjct: 107 PL-ANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSN 144
Score = 66.5 bits (163), Expect = 5e-12
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+LDL +I + + L + + N I I L L+ L N N++ I
Sbjct: 246 TDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI-S 303
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ NL NL L L NNI D+ P+S+L KL+ L +N
Sbjct: 304 PI-SNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNN 341
Score = 66.1 bits (162), Expect = 7e-12
Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 17/158 (10%)
Query: 4 LTADLIVQCMQYT------NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI 57
L + I Q + + L + + LDQ T+ I+ I
Sbjct: 3 LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSI 61
Query: 58 DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKT 117
DG L L+ + F+NN++ I L +NL L +++ N I D+ PL+ L L
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDI-TPL-KNLTKLVDILMNNNQIA---DITPLANLTNLTG 116
Query: 118 LCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
L L +N + + + L + L+ S + +
Sbjct: 117 LTLFNNQITD-----IDPLKNLTNLNRLELSSNTISDI 149
Score = 65.0 bits (159), Expect = 1e-11
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L L +I I+ + L + ++ S+N I I L L L F N V +
Sbjct: 115 TGLTLFNNQITDIDPLK-NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ--VTDLK 171
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
L NL LE L ++ N + D+ L+ L L++L +N
Sbjct: 172 PL-ANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNN 209
Score = 64.2 bits (157), Expect = 2e-11
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
++L G ++ ++ + L + +D S+N + I L L L NN+I I
Sbjct: 159 QQLSF-GNQVTDLKPLA-NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI-T 215
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
L L NL+ L L GN ++ D+ L++L L L L +N + N
Sbjct: 216 PL-GILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISN 257
Score = 63.4 bits (155), Expect = 4e-11
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L+L ++ I + L + N+I I L +L LFF NN++ +
Sbjct: 290 TNLELNENQLEDISPIS-NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-S 347
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRP 129
+L NL N+ L N I DL PL+ L ++ L L N P
Sbjct: 348 SL-ANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLNDQAWTNAP 391
Score = 54.6 bits (132), Expect = 3e-08
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L L I I + +L + + F NN + + L ++ L +N+I +
Sbjct: 312 TYLTLYFNNISDISPVS-SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL-T 369
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
L NL + L L P++ + + N
Sbjct: 370 PL-ANLTRITQLGLNDQAWTNA----PVNYKANVSIPNTVKN 406
Score = 49.6 bits (119), Expect = 1e-06
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 4/102 (3%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ L K+ + ++ L + + +N I + L R++ L N+
Sbjct: 334 QRLFFYNNKVSDVSSLA-NLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPV 392
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
N + N+ T+ N L +S + N
Sbjct: 393 NYKANVSIPNTVK---NVTGALIAPATISDGGSYTEPDITWN 431
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 69.4 bits (170), Expect = 5e-13
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRI 79
R L+L + I N+ L + D +D S N + I F L L L+ ++I I
Sbjct: 188 RYLNLAMCNLREIPNL-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
N +NL +L + L NN+ L D + L L+ + L HNP
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLHHNP 290
Score = 69.0 bits (169), Expect = 7e-13
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 22 RELDLRGY-KIPVIENMG-ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
R LDL ++ I L ++ + ++R+I L +L L + N + I
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ L +L+ L + + IQ + + + L L + L HN
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEINLAHN 265
Score = 62.8 bits (153), Expect = 7e-11
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 12/144 (8%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
L L I IE GA L +T++ +N + I F L +L L+ NN I
Sbjct: 91 EILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 78 RIAENLQENLPNLETLILTGNN-IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
I +P+L L L + + + L L+ L L + P+
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPNLT---- 204
Query: 137 FKLPQVKLLDFSKVKLKALMNVMF 160
L ++ LD S L A+ F
Sbjct: 205 -PLIKLDELDLSGNHLSAIRPGSF 227
Score = 59.0 bits (143), Expect = 1e-09
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 46 TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
++ N I+ I F L+ L L + N I I L NL TL L N + +
Sbjct: 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127
Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLD 146
+ L KLK L L +NP+ + P Y AF +P ++ LD
Sbjct: 128 PN-GAFVYLSKLKELWLRNNPIESIPSY----AFNRIPSLRRLD 166
Score = 53.6 bits (129), Expect = 5e-08
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
ELDL G + I L + + I+ I+ F L+ L + +N +
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269
Query: 79 IAENLQENLPNLETLILTGNNIQ 101
+ +L L +LE + L N
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWN 292
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 69.0 bits (169), Expect = 8e-13
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 3/104 (2%)
Query: 22 RELDLRGY-KIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
LDL K+ I E L ++ +I+ + L L L + N I
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
L +L+ L + + + + + + L L L L HN
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNLAHN 276
Score = 66.3 bits (162), Expect = 6e-12
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRI 79
+ L+L I + N+ L + ++ S N +I F L L L+ N+++ I
Sbjct: 199 KYLNLGMCNIKDMPNL-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
N + L +L L L NN+ L D + L L L L HNP
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSL-PHDLFTPLRYLVELHLHHNP 301
Score = 61.7 bits (150), Expect = 1e-10
Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 12/144 (8%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
L L I IE GA L +T++ +N + I F L +L L+ NN I
Sbjct: 102 EVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 78 RIAENLQENLPNLETLILTGNN-IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
I +P+L L L ++ + + L LK L L + + P+
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDMPNLT---- 215
Query: 137 FKLPQVKLLDFSKVKLKALMNVMF 160
L ++ L+ S + F
Sbjct: 216 -PLVGLEELEMSGNHFPEIRPGSF 238
Score = 59.8 bits (145), Expect = 7e-10
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 46 TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
++ N+I+ I F L L L N I +I L +L TL L N + +
Sbjct: 79 YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138
Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLD 146
L KL+ L L +NP+ + P Y AF +P + LD
Sbjct: 139 PS-GAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLMRLD 177
Score = 54.0 bits (130), Expect = 4e-08
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
EL++ G P I L + N+ + I+ F L L L +N +
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280
Query: 79 IAENLQENLPNLETLILTGNNIQ 101
+ +L L L L L N
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPWN 303
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 68.9 bits (169), Expect = 9e-13
Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 3/142 (2%)
Query: 22 RELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRI 79
++L+ + I N +D + + ++ G L L L + N+ +
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKL 139
+ N P+L L + GN + L L L+ L L H+ I L
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNL 375
Query: 140 PQVKLLDFSKVKLKALMNVMFG 161
++ L+ S + +L F
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFK 397
Score = 63.9 bits (156), Expect = 4e-11
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 9/133 (6%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKID----GFPLLKRLSCLFFNNNR 75
L ++G + G L+ +D S++DI D L L L + N
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 76 IVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYV 135
+ + + P LE L L ++ P L LK L L H+ +
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD- 446
Query: 136 AFKLPQVKLLDFS 148
LP ++ L+
Sbjct: 447 --GLPALQHLNLQ 457
Score = 61.6 bits (150), Expect = 2e-10
Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 9/107 (8%)
Query: 46 TIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
+ F I ID PL K L L+ +N I I L+ L N I L
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168
Query: 104 --GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
D+ L L +L L N + AF + L+F
Sbjct: 169 SKEDMSSLQQATNL-SLNLNGNDIAGIEP----GAFDSAVFQSLNFG 210
Score = 61.2 bits (149), Expect = 3e-10
Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 11/147 (7%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG---FPLLKRLSCLFFNNNRIV 77
+ L+L + ++ Q + +D + ++ D F L L L +++ +
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHNPVINRPHYRLYV 135
+E L + LP L+ L L GN+ + L TL +L+ L L + + +
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH---- 494
Query: 136 AFK-LPQVKLLDFSKVKLKALMNVMFG 161
AF L + +D S +L +
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALS 521
Score = 60.8 bits (148), Expect = 4e-10
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 46 TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
++FS N + I F L L+ L +I I E+ ++ L+TL+LT N + +
Sbjct: 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96
Query: 104 GDLDPLSTLPKLKTLCLLHN 123
+ LS LK L +
Sbjct: 97 AE-TALSGPKALKHLFFIQT 115
Score = 52.3 bits (126), Expect = 2e-07
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 7/117 (5%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
T + N + +I G L CL F+ N + I L NL L LT I + +
Sbjct: 16 TYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74
Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG 161
D + +L TL L NP+I A +K L F + + ++ +
Sbjct: 75 -DTFQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLH 126
Score = 51.2 bits (123), Expect = 4e-07
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 46 TIDFSNNDIRKIDGFPL-----LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
++ N K + L RL L + + I ++ +L + + L+ N +
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Query: 101 QELGDLDPLSTLPKLKTLCLLHN 123
++ LS L + L L N
Sbjct: 513 TSS-SIEALSHLKGI-YLNLASN 533
Score = 46.5 bits (111), Expect = 1e-05
Identities = 21/173 (12%), Positives = 44/173 (25%), Gaps = 39/173 (22%)
Query: 22 RELDLRGYKIPVIENMGATLD-----QFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNR 75
+ LD + I + + +++ + NDI I+ G L F +
Sbjct: 156 KVLDFQNNAIHYLSK--EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213
Query: 76 IVR--IAENLQENLPNLETLILTGNNIQE-----------------------LGDLDP-- 108
+ + +L + ++ ++
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273
Query: 109 LSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG 161
L+ L L + P L +K L S K + L +
Sbjct: 274 FHCFSGLQELDLTATHLSELPSG----LVGLSTLKKLVLSANKFENLCQISAS 322
Score = 46.2 bits (110), Expect = 2e-05
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 22 RELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
L L + + ++ +L + +D S+N + LK + L +N I
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISI 537
Query: 79 IAENLQENLPNLETLILTGNNIQ 101
I +L L T+ L N +
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLD 560
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 68.2 bits (167), Expect = 2e-12
Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 13/189 (6%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
+ LDL KI I + + ++ I I+G F L L L ++N +
Sbjct: 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF- 137
++ + L +L+ L L GN Q LG L L+TL + + + F
Sbjct: 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFA 145
Query: 138 KLPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSIDAGDQALF-IMNHRTRLDWNF 191
L + L+ + L+ + + L + I++ L+
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 192 LWGCMFHAS 200
F S
Sbjct: 206 TNLARFQFS 214
Score = 59.4 bits (144), Expect = 1e-09
Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 11/134 (8%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
R L + + + + + L++ I N+ + + LK L L + N +V
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348
Query: 79 IA---ENLQENLPNLETLILTGNNIQELGDL-DPLSTLPKLKTLCLLHNPVINRPHYRLY 134
+ P+L+TL+L+ N+++ + + L TL L +L + N +
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSC- 406
Query: 135 VAFKLPQVKLLDFS 148
+++ L+ S
Sbjct: 407 --QWPEKMRFLNLS 418
Score = 58.2 bits (141), Expect = 3e-09
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 16 TNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNR 75
P K R L+L I V++ + +D SNN++ F L RL L+ + N+
Sbjct: 407 QWPEKMRFLNLSSTGIRVVKT--CIPQTLEVLDVSNNNLDSFSLF--LPRLQELYISRNK 462
Query: 76 IVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
+ + + P L + ++ N ++ + L L+ + L NP
Sbjct: 463 LKTLPDAS--LFPVLLVMKISRNQLKSV-PDGIFDRLTSLQKIWLHTNP 508
Score = 56.7 bits (137), Expect = 8e-09
Identities = 13/110 (11%), Positives = 38/110 (34%), Gaps = 3/110 (2%)
Query: 48 DFSNNDIRKIDGFPLLK--RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
DF+ ++ + ++ + L + + L ++ + + + + +
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327
Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
L L+ L L N ++ P ++ L S+ L+++
Sbjct: 328 -SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Score = 52.8 bits (127), Expect = 1e-07
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 24/123 (19%)
Query: 22 RELDLRGYKIPVIENMGATLDQFD---TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIV 77
+ L L + ++ G L ++D S N + D +++ L ++ I
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423
Query: 78 RIA-----------------ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
+ ++ LP L+ L ++ N ++ L S P L + +
Sbjct: 424 VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK---TLPDASLFPVLLVMKI 480
Query: 121 LHN 123
N
Sbjct: 481 SRN 483
Score = 51.6 bits (124), Expect = 3e-07
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 11/115 (9%)
Query: 46 TIDFSNNDIRKIDGFP--LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
D + I P L + L + N+I I NL+ LIL + I +
Sbjct: 9 VCDGRSRSFTSI---PSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65
Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKALMN 157
D +L L+ L L N + + F L +K L+ + L
Sbjct: 66 EG-DAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLGV 115
Score = 50.9 bits (122), Expect = 5e-07
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
LD+ + L + + S N ++ + L L + + N++ + +
Sbjct: 434 EVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD 490
Query: 82 NLQENLPNLETLILTGNNIQ 101
+ + L +L+ + L N
Sbjct: 491 GIFDRLTSLQKIWLHTNPWD 510
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 67.4 bits (165), Expect = 2e-12
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 8/134 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
ELD I V+ + + +N++ L + + N + +I
Sbjct: 208 EELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 265
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
+ + LE L ++ N + L +P LK L L HN +++ + +
Sbjct: 266 HPFVKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNHLLHVER----NQPQFDR 319
Query: 142 VKLLDFSKVKLKAL 155
++ L + L
Sbjct: 320 LENLYLDHNSIVTL 333
Score = 63.9 bits (156), Expect = 2e-11
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
+ + + + + + + Q + ++ ++ I +ID F + L+ N I
Sbjct: 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ ++ +N+P L L+L N++ L PKL TL + +N
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNN 151
Score = 54.7 bits (132), Expect = 2e-08
Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 28/159 (17%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
L L + + + + T+ SNN++ +I+ F L L ++NR+
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTL---------------PKLKTLCLLHN 123
+ + +P+L ++ N + L + L +L L L HN
Sbjct: 180 VDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236
Query: 124 PVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG 161
+ + P + +D S +L+ +M F
Sbjct: 237 NLTDTA------WLLNYPGLVEVDLSYNELEKIMYHPFV 269
Score = 54.7 bits (132), Expect = 2e-08
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIA 80
L + ++ + G + +D S+N + ++ P RL L+ ++N IV +
Sbjct: 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
+ L+ L L+ N+ + + +
Sbjct: 335 LS---THHTLKNLTLSHNDWDCNSLRALFRNVARPA---VDDAD 372
Score = 50.8 bits (122), Expect = 4e-07
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 47 IDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL 106
ID D+ L + F N+ + ++ L ++ +E L L I+E+
Sbjct: 28 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT- 86
Query: 107 DPLSTLPKLKTLCLLHN 123
+ ++ L + N
Sbjct: 87 YAFAYAHTIQKLYMGFN 103
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 65.7 bits (160), Expect = 1e-11
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 8/134 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
ELD I V+ + + +N++ L + + N + +I
Sbjct: 214 EELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 271
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
+ + LE L ++ N + L +P LK L L HN +++ + +
Sbjct: 272 HPFVKMQRLERLYISNNRLVALNLY--GQPIPTLKVLDLSHNHLLHVER----NQPQFDR 325
Query: 142 VKLLDFSKVKLKAL 155
++ L + L
Sbjct: 326 LENLYLDHNSIVTL 339
Score = 65.7 bits (160), Expect = 1e-11
Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 10/161 (6%)
Query: 22 RELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
L+L +I I+ A + N IR + F + L+ L N +
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK 138
+ + N P L TL ++ NN++ + D D L+ L L N + +
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD------LSL 190
Query: 139 LPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALF 179
+P + + S L L + E+ S +SI+ +
Sbjct: 191 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231
Score = 62.3 bits (151), Expect = 1e-10
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
+ + + + + + + Q + ++ ++ I +ID F + L+ N I
Sbjct: 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ ++ +N+P L L+L N++ L PKL TL + +N
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNN 157
Score = 59.2 bits (143), Expect = 1e-09
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 40 TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG 97
TL+ + F N+ +RK+ +++ L N+ +I I ++ L +
Sbjct: 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 98 NNIQELGDLDPLSTLPKLKTLCLLHN 123
N I+ L +P L L L N
Sbjct: 109 NAIRYL-PPHVFQNVPLLTVLVLERN 133
Score = 52.6 bits (126), Expect = 1e-07
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ L L ++ ++ + + + S N + + + + L ++N I +
Sbjct: 174 QNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTL---AIPIAVEELDASHNSINVVRG 228
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ L L L NN+ + L P L + L +N
Sbjct: 229 PV---NVELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYN 264
Score = 52.2 bits (125), Expect = 2e-07
Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIA 80
L + ++ + G + +D S+N + ++ P RL L+ ++N IV +
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTL 118
+ L+ L L+ N+ + +
Sbjct: 341 LS---THHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 375
Score = 51.1 bits (122), Expect = 4e-07
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 47 IDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL 106
ID D+ L + F N+ + ++ L ++ +E L L I+E+
Sbjct: 34 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT- 92
Query: 107 DPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG 161
+ ++ L + N + P + F+ +P + +L + L +L +F
Sbjct: 93 YAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFH 144
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 65.5 bits (160), Expect = 1e-11
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
+ LDL +I IE+ GA +L T+ + N I+ + F L L L +
Sbjct: 55 QVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
+ +L L+ L + N IQ + S L L+ L L N + + L V
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 138 KLPQVKL-LDFSKVKLKAL 155
++P + L LD S + +
Sbjct: 174 QMPLLNLSLDLSLNPMNFI 192
Score = 59.0 bits (143), Expect = 2e-09
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 46 TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
+D S N +R + F L L + I I + ++L +L TLILTGN IQ L
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
S L L+ L + + + ++ L +K L+ + +++
Sbjct: 92 AL-GAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSF 139
Score = 58.6 bits (142), Expect = 2e-09
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 34/164 (20%)
Query: 22 RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIV 77
LDL +D S N + + F L++L L F ++ +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409
Query: 78 RIAE--------NLQE-----------------NLPNLETLILTGNNIQELGDLDPLSTL 112
+++E NL L +LE L + GN+ QE D + L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 113 PKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
L L L + + AF L +++L+ + +LK++
Sbjct: 470 RNLTFLDLSQCQ-LEQLSPT---AFNSLSSLQVLNMASNQLKSV 509
Score = 57.0 bits (138), Expect = 5e-09
Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIV 77
LD+ V N L + + + N ++ D F L+ L+ L + ++
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
+++ +L +L+ L + N ++ + L L+ + L NP
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNP 529
Score = 52.4 bits (126), Expect = 2e-07
Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 24/135 (17%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE----NLQE----------- 85
L + + I ++ F L N + + +L+
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340
Query: 86 ----NLPNLETLILTGNNIQELGDL-DPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
+LP+LE L L+ N + G LK L L N VI L
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS----NFLGLE 396
Query: 141 QVKLLDFSKVKLKAL 155
Q++ LDF LK +
Sbjct: 397 QLEHLDFQHSNLKQM 411
Score = 43.2 bits (102), Expect = 1e-04
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 46 TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ 101
+D S + ++ F L L L +N++ + + + + L +L+ + L N
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 36.6 bits (85), Expect = 0.014
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 11/117 (9%)
Query: 18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDI------RKIDGFPLLKRLS---C 68
P+ + LDL + I+ + + NN I G L+
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Query: 69 LFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHN 123
F N + + ++ E L NL + D + L + + L+
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Score = 32.8 bits (75), Expect = 0.24
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 85 ENLP-NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+NLP + + L L+ N ++ LG + P+L+ L L
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRC 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 65.1 bits (159), Expect = 2e-11
Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVR 78
R LDL ++ L++ +DF ++ ++++ F L++L L +
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ + L +L TL + GN+ ++ + + L L L
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Score = 63.5 bits (155), Expect = 5e-11
Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 15/158 (9%)
Query: 22 RELDLRGYKIPVIEN---MGATLDQFDTIDFSNNDIRKIDG-FPLLKRLSCLFFNNNRIV 77
LDL + + +D S N + F L+ L L F ++ +
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLK 412
Query: 78 RIAE-NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
R+ E + +L L L ++ N + D L L TL + N +
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSN---V 468
Query: 137 FK-LPQVKLLDFSKVKLKALMNVMFG-----TEIILSG 168
F + LD SK +L+ + +F + +S
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Score = 63.5 bits (155), Expect = 5e-11
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 9/131 (6%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL----LKRLSCLFFNNNRIV 77
+ L L K + L +D S N + L L + N +
Sbjct: 331 KSLTLTMNKGSISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
++ N L L+ L + ++ + + +L KL L + +
Sbjct: 390 IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL--- 445
Query: 138 KLPQVKLLDFS 148
L + L +
Sbjct: 446 GLTSLNTLKMA 456
Score = 57.7 bits (140), Expect = 3e-09
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
+ LDL +I IE+ L + + N I+ F L L L ++
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ L L+ L + N I S L L + L +N
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 57.7 bits (140), Expect = 4e-09
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
+ + I+ ++ P + L ++ + +LP L++L LT N
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL---DLPFLKSLTLTMNKGS---I 342
Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
LP L L L N ++ Y ++ LD S
Sbjct: 343 SFKKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLS 384
Score = 57.3 bits (139), Expect = 5e-09
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 46 TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
ID S N ++ + F L L + I I + L +L LILTGN IQ
Sbjct: 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95
Query: 104 GDLDPLSTLPKLKTLCLLHN 123
S L L+ L +
Sbjct: 96 SP-GSFSGLTSLENLVAVET 114
Score = 57.0 bits (138), Expect = 6e-09
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 46 TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
+D S + +I F L RL L ++N ++ + + L +L TL + N I+
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536
Query: 104 GDLDPLSTLPKLKTLCLLHNP 124
L L +N
Sbjct: 537 -KGILQHFPKSLAFFNLTNNS 556
Score = 53.5 bits (129), Expect = 8e-08
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 46 TIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRIAEN-LQENLPNLETLILTGNNIQE 102
+ + ++ FP+ L L L +N I NL NL + L+ N IQ
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167
Query: 103 L--GDLDPLSTLPK-LKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
+ DL L P+ +L + NP+ AF+ ++ L
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ----AFQGIKLHELTLR 212
Score = 51.6 bits (124), Expect = 3e-07
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 11/119 (9%)
Query: 46 TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
T + + K+ D K + + N + + N L+ L L+ I+ +
Sbjct: 15 TYQCMDQKLSKVPDDIPSSTKNID---LSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71
Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG 161
D L L L L NP+ + +F L ++ L + KL +L + G
Sbjct: 72 ED-KAWHGLHHLSNLILTGNPIQSFSPG----SFSGLTSLENLVAVETKLASLESFPIG 125
Score = 50.4 bits (121), Expect = 8e-07
Identities = 29/169 (17%), Positives = 48/169 (28%), Gaps = 35/169 (20%)
Query: 22 RELDLRGYKI--PVIENMGATLDQFDTIDFSNNDIRKI--------DGFPLLKRLSCLFF 71
EL LRG +++ L + + L ++ F
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 72 --NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLD------------------PLST 111
L N+ + L G +I+ L D+ P
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD 326
Query: 112 LPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMF 160
LP LK+L L N + ++ LP + LD S+ L +
Sbjct: 327 LPFLKSLTLTMNK-GSISFKKV----ALPSLSYLDLSRNALSFSGCCSY 370
Score = 47.3 bits (113), Expect = 6e-06
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 22 RELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
LDL ++ + + TL + ++ S+N++ +D + L LS L + NRI
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
Query: 79 IAENLQENLPNLETLILTGNNI 100
LQ +L LT N++
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSV 557
Score = 47.3 bits (113), Expect = 7e-06
Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 19/168 (11%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSC----LFFNN 73
++L++ I + L +D S N I+ I L+ L +
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Query: 74 NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPV-----INR 128
N I I + + + L L L GN L L L L+ +
Sbjct: 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249
Query: 129 PHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSI 171
+ + + + V F + + L+G SI
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 63.2 bits (154), Expect = 3e-11
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 18 PVKDRELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNN 74
+ LDL +I I N + ++N I I+ F L L L + N
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 75 RIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126
+ ++ + + L +L L L GN + LG+ S L KL+ L + +
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162
Score = 52.8 bits (127), Expect = 9e-08
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 11/150 (7%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNND-IRKI--DGFPLLKRLSCLFFNNNRI 76
L+L G + L + + N D KI F L L L + + +
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186
Query: 77 VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRL-YV 135
+++ N+ LIL L ++ + ++ L L + L
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIF-VDVTSSVECLELRDTDLDTFHFSELSTG 245
Query: 136 AF----KLPQVKLLDFSKVKLKALMNVMFG 161
K + + + L +M ++
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Score = 50.9 bits (122), Expect = 3e-07
Identities = 14/114 (12%), Positives = 36/114 (31%), Gaps = 13/114 (11%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKI----------DGFPLLKRLSCLF 70
L L + ++ E + ++ + D+ + +
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260
Query: 71 FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
+ + ++ + L + L L + N ++ + D L L+ + L NP
Sbjct: 261 ITDESLFQVMKLLN-QISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNP 312
Score = 45.1 bits (107), Expect = 2e-05
Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 41 LDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN 99
F + ++ + ++ + L L F+ N++ + + + + L +L+ + L N
Sbjct: 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312
Query: 100 IQ 101
Sbjct: 313 WD 314
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 64.5 bits (157), Expect = 3e-11
Identities = 15/106 (14%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 22 RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVR 78
+ + + P ++ + + +D +N +R ++ F +L+ L + N+I
Sbjct: 551 QIFYMGYNNLEEFPASASLQK-MVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE 609
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
I E+ +E L + N ++ + ++ ++ + ++ +N
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655
Score = 49.9 bits (119), Expect = 1e-06
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 50 SNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQE---------NLPNLETLILTGNN 99
+ ++ ++ D L L L NR + A+ + P ++ + NN
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559
Query: 100 IQELGDLDPLSTLPKLKTLCLLHN 123
++E L + KL L +HN
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHN 583
Score = 49.1 bits (117), Expect = 2e-06
Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 17/118 (14%)
Query: 22 RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKI-------DGFPLLKRLSCLFF 71
L IP I N ++ ++DFS N I S +
Sbjct: 622 EGLGFSHNKLKYIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680
Query: 72 NNNRIVRIAENLQENLPNLETLILTGNNIQEL------GDLDPLSTLPKLKTLCLLHN 123
+ N I + L + T+IL+ N + + L T+ L N
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738
Score = 46.8 bits (111), Expect = 1e-05
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 13/87 (14%)
Query: 46 TIDFSNNDIRKI-DGFPLLKRL------SCLFFNNNRIVR-IAENLQENLPNLETLILTG 97
+D S N +L NRI+R + P+L L +
Sbjct: 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGS 815
Query: 98 NNIQELGDLDPLSTLPKLKTLCLLHNP 124
N+I+++ P+L L + NP
Sbjct: 816 NDIRKV----DEKLTPQLYILDIADNP 838
Score = 46.4 bits (110), Expect = 2e-05
Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 19/166 (11%)
Query: 4 LTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQF-------DTIDFSNNDIRK 56
L D I + + KD + L+ +I + N + + I F+N+
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS---P 459
Query: 57 IDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDP-LSTLPKL 115
+ + + E NL +L + L + L L LP+L
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN--MTQLPDFLYDLPEL 517
Query: 116 KTLCLLHN-----PVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
++L + N + RL P++++ L+
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563
Score = 36.8 bits (85), Expect = 0.013
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Query: 63 LKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLL 121
R++ L R+ + + L L+ L ++ G L L +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380
Query: 122 HNPVINRPHYRLYVAFKLPQVKLLDFSKVKL 152
H R HY+ ++ L D + +
Sbjct: 381 HR---IRMHYKKMFLDYDQRLNLSDLLQDAI 408
Score = 32.9 bits (75), Expect = 0.26
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
+ +NDIRK+D L +L L +N + I +L + Q++
Sbjct: 810 QLQIGSNDIRKVD-EKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868
Query: 106 LD 107
D
Sbjct: 869 CD 870
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 62.3 bits (152), Expect = 5e-11
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVR 78
+ LDL + + + L+Q + +DF +++++++ F L+ L L ++
Sbjct: 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ L +LE L + GN+ QE D + L L L L
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Score = 58.5 bits (142), Expect = 1e-09
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 22 RELDLRG--YKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIV 77
L + G ++ + ++ L +D S + ++ F L L L ++N
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212
Query: 78 RIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHNP 124
+ + L +L+ L + N+I +L + L L L N
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS--SLAFLNLTQND 259
Score = 49.2 bits (118), Expect = 9e-07
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 10/114 (8%)
Query: 45 DTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
I ++ + + G P + L +N++ + + + L L L L+ N +
Sbjct: 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 104 GDLDP-LSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
G LK L L N VI F L Q++ LDF LK +
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSS-----NFLGLEQLEHLDFQHSNLKQM 116
Score = 47.3 bits (113), Expect = 4e-06
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
LDL ++ + +L ++ S+N+ +D + L L L ++ N I+
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
Query: 79 IAENLQENLP-NLETLILTGNNIQ 101
+ ++ P +L L LT N+
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 62.3 bits (152), Expect = 6e-11
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 22 RELDLRGYKIPVIEN--MGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
+ LDL+ +I + + A+ D + ++ N I + G + +L L ++N++ +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
++ + + L N + + L L+ L N
Sbjct: 207 GPEF-QSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNG 248
Score = 59.6 bits (145), Expect = 4e-10
Identities = 26/134 (19%), Positives = 56/134 (41%), Gaps = 10/134 (7%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
R LDL + + G +++ T+ +NN+I ++ + ++ NN+I + +
Sbjct: 83 RTLDLNNNYVQELLV-GPSIE---TLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRD 137
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
+ ++ L L N I + + ++ L+ L L +N + + +
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-----QVVFAK 192
Query: 142 VKLLDFSKVKLKAL 155
+K LD S KL +
Sbjct: 193 LKTLDLSSNKLAFM 206
Score = 56.9 bits (138), Expect = 4e-09
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIA 80
L+L+ I ++ + T+D S+N + + F ++ + NN++V I
Sbjct: 172 EHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTL 118
+ L+ NLE L GN D S +++T+
Sbjct: 231 KALR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Score = 56.5 bits (137), Expect = 4e-09
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
+ + + ++ + +D S N + +I +L L ++N +
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ E+L L TL L N +QE L P ++TL +N
Sbjct: 73 TLDL--ESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANN 109
Score = 55.4 bits (134), Expect = 1e-08
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
+++ +++ +++ + L + N + +I+ LE L L+ N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHN 123
+ E L +L L+TL L +N
Sbjct: 69 VLYETL---DLESLSTLRTLDLNNN 90
Score = 50.0 bits (120), Expect = 6e-07
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 60 FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLC 119
R ++ + + +L+++ N++ L L+GN + ++ L+ KL+ L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLN 64
Query: 120 LLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
L N + L ++ LD + ++ L
Sbjct: 65 LSSNVLYETLDLE-----SLSTLRTLDLNNNYVQEL 95
Score = 37.7 bits (88), Expect = 0.005
Identities = 6/41 (14%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 83 LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+++N + +T +++++ + +K L L N
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGN 44
Score = 33.0 bits (76), Expect = 0.15
Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 11/105 (10%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ LR K+ +IE + D N L F N R+ +A+
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT-------LRDFFSKNQRVQTVAK 269
Query: 82 NLQENLPNLETLILTGNNIQELGDLD----PLSTLPKLKTLCLLH 122
+ L T + G P +L L H
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHH 314
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 61.5 bits (150), Expect = 7e-11
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
+ L L+ + + + L + N I + F L L L + NR+
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
+ + +L L TL L NN+ L + L+ L L+ L L NP
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNP 236
Score = 60.8 bits (148), Expect = 2e-10
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 11/132 (8%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
L L + + G L + +N ++ + D F L L+ LF + NRI
Sbjct: 108 HTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
+ E L +L+ L+L N + + L +L TL L N + P A
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTE----AL 221
Query: 138 K-LPQVKLLDFS 148
L ++ L +
Sbjct: 222 APLRALQYLRLN 233
Score = 57.3 bits (139), Expect = 2e-09
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 10/139 (7%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNN-DIRKI--DGFPLLKRLSCLFFNNNRIV 77
L L + I+ L + +D S+N +R + F L RL L + +
Sbjct: 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
+ L L L+ L L N +Q L D D L L L L N + + P AF
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPER----AF 173
Query: 138 K-LPQVKLLDFSKVKLKAL 155
+ L + L + ++ +
Sbjct: 174 RGLHSLDRLLLHQNRVAHV 192
Score = 49.6 bits (119), Expect = 7e-07
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
L L G +I + L D + N + + F L RL L+ N +
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 79 IAENLQENLPNLETLILTGNNIQ 101
+ L L+ L L N
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWV 238
Score = 49.2 bits (118), Expect = 8e-07
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 46 TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
T ++ + G P +F + NRI + NL L L N + +
Sbjct: 15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 105 DLDPLSTLPKLKTLCLLHNPVI 126
+ L L+ L L N +
Sbjct: 73 A-AAFTGLALLEQLDLSDNAQL 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 62.2 bits (151), Expect = 1e-10
Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 22 RELDLRGYKIPVIE--NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
+ LDL+ +I + + A+ D + ++ N I + G + +L L ++N++ +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
++ + + L N + + L L+ L N
Sbjct: 207 GPEF-QSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNG 248
Score = 58.7 bits (142), Expect = 1e-09
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
R LDL + + +T+ +NN+I ++ + ++ NN+I + +
Sbjct: 83 RTLDLNNNYVQELLV----GPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRD 137
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ ++ L L N I + + ++ L+ L L +N
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Score = 57.5 bits (139), Expect = 4e-09
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIA 80
L+L+ I ++ + T+D S+N + + F ++ + NN++V I
Sbjct: 172 EHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126
+ L+ NLE L GN D S +++T+ +
Sbjct: 231 KALR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275
Score = 55.2 bits (133), Expect = 2e-08
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 41 LDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
+++ +++ +++ + L + N + +I+ LE L L+ N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHN 123
+ E L +L L+TL L +N
Sbjct: 69 VLYETL---DLESLSTLRTLDLNNN 90
Score = 48.7 bits (116), Expect = 2e-06
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 60 FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLC 119
R ++ + + +L+++ N++ L L+GN + ++ L+ KL+ L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLN 64
Query: 120 LLHN 123
L N
Sbjct: 65 LSSN 68
Score = 46.4 bits (110), Expect = 1e-05
Identities = 17/146 (11%), Positives = 44/146 (30%), Gaps = 13/146 (8%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVR 78
+ LR K+ +IE + D N D F +R+ + + +
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKK 274
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYV--- 135
+ +E ++L P +L L + +++
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDL----PAPFADRLIALKRKEHALLSGQGSETERLEC 330
Query: 136 -AFKLPQVKLLDFSKVKLKALMNVMF 160
+ + +D K + + +++ +
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVT 356
Score = 39.4 bits (92), Expect = 0.002
Identities = 6/89 (6%), Positives = 20/89 (22%), Gaps = 2/89 (2%)
Query: 40 TLDQFDTIDFSNNDIRKID-GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
+ + ++ +++ R + + + + + TL
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
+ E +L I
Sbjct: 371 ALDEQVSN-GRRAHAELDGTLQQAVGQIE 398
Score = 36.7 bits (85), Expect = 0.013
Identities = 6/41 (14%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 83 LQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+++N + +T +++++ + +K L L N
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGN 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 61.2 bits (149), Expect = 1e-10
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRI 79
+ + I I + N I K+D L L+ L + N I +
Sbjct: 174 SYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHNP 124
N P+L L L N + ++ P L+ ++ + L +N
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKV----PGGLADHKYIQVVYLHNNN 274
Score = 60.8 bits (148), Expect = 2e-10
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
EL L G KI + L+ + S N I +D L L NNN++V+
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254
Query: 79 IAENLQENLPNLETLILTGNNIQELGD-----LDPLSTLPKLKTLCLLHNPV 125
+ L + ++ + L NNI +G + + L NPV
Sbjct: 255 VPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
Score = 58.5 bits (142), Expect = 1e-09
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 46 TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
+D NN I +I F LK L L NN+I +I+ L LE L L+ N ++EL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 104 GDLDPLSTLPKLKTLCLLHN 123
P L+ L + N
Sbjct: 116 ----PEKMPKTLQELRVHEN 131
Score = 56.5 bits (137), Expect = 5e-09
Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 20/177 (11%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRI--V 77
L L ++ + + N+I K+ F L ++ + N +
Sbjct: 103 ERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
I + + L + + NI + P P L L L N + +
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTI----PQGLPPSLTELHLDGNKITKVDAA----SL 212
Query: 138 K-LPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSIDAGDQALFIMNHRTRLD 188
K L + L S + A+ N E+ L+ + + L + +
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY 269
Score = 55.4 bits (134), Expect = 1e-08
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVR 78
+L L I ++N G+ + +NN + K+ G K + ++ +NN I
Sbjct: 219 AKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Query: 79 IAEN------LQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHN 123
I N + + L N +Q ++ P + + L +
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQLGNY 329
Score = 55.0 bits (133), Expect = 2e-08
Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 22 RELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80
L L KI I A L + + + S N ++++ + K L L + N I ++
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVR 137
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHN 123
+++ L + + L N ++ G ++ + KL + +
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSG-IENGAFQGMKKLSYIRIADT 181
Score = 36.9 bits (86), Expect = 0.010
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 63 LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
L+ + C ++ + ++ ++L P+ L L N I E+ D L L TL L++
Sbjct: 33 LRVVQC---SDLGLEKVPKDLP---PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILIN 85
Query: 123 NPVIN-RPHYRLYVAF-KLPQVKLLDFSKVKLKALMNVMF 160
N + P AF L +++ L SK +LK L M
Sbjct: 86 NKISKISPG-----AFAPLVKLERLYLSKNQLKELPEKMP 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 61.4 bits (149), Expect = 1e-10
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 9/114 (7%)
Query: 46 TIDFSNNDIRKIDG---FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQE 102
+D S+N++ ++ L L L ++N + I+ +PNL L L+ N++
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 103 LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
L + S L L+ L L +N ++ AF + Q++ L S+ ++
Sbjct: 103 LDEFL-FSDLQALEVLLLYNNHIVVVDRN----AFEDMAQLQKLYLSQNQISRF 151
Score = 53.3 bits (128), Expect = 6e-08
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 22 RELDLRGYKIPVIENMGATLDQFD------TIDFSNNDIRKIDG--FPLLKRLSCLFFNN 73
R LDL + ++ F + NN I +D F + +L L+ +
Sbjct: 91 RYLDLSSNHLHTLDE-----FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 74 NRIVRIAENL---QENLPNLETLILTGNNIQELGDLDPLSTLPKLK--TLCLLHNP 124
N+I R L LP L L L+ N +++L L LP L L +NP
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNP 200
Score = 42.1 bits (99), Expect = 2e-04
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 22 RELDLRGYKIPVIENMGATLDQFD------TIDFSNNDIRKI-----DGFPLLKRLSCLF 70
L L I V++ + F+ + S N I + L +L L
Sbjct: 115 EVLLLYNNHIVVVDR-----NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169
Query: 71 FNNNRIVRIAENLQENLPNL--ETLILTGNNIQ 101
++N++ ++ + LP L L N ++
Sbjct: 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
Score = 37.1 bits (86), Expect = 0.008
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 85 ENLP-NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQV 142
++LP L L+ NN+ L + L L +L L HN + AF +P +
Sbjct: 35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE----AFVPVPNL 90
Query: 143 KLLDFSKVKLKALMNVMF 160
+ LD S L L +F
Sbjct: 91 RYLDLSSNHLHTLDEFLF 108
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 60.8 bits (148), Expect = 2e-10
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRI 79
L + K+ I + + + +N I+ I+ +L L +N+I I
Sbjct: 175 NYLRISEAKLTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHNP 124
LP L L L N + + P L L L+ + L N
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRV----PAGLPDLKLLQVVYLHTNN 275
Score = 60.8 bits (148), Expect = 2e-10
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 22 RELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
EL L KI IE + + +N IR I+ L L L +NN++ R
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255
Query: 79 IAENLQENLPNLETLILTGNNIQELG-----DLDPLSTLPKLKTLCLLHNPV 125
+ L +L L+ + L NNI ++G + + L +NPV
Sbjct: 256 VPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306
Score = 57.7 bits (140), Expect = 2e-09
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 46 TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
+D NNDI ++ D F L+ L L NN+I +I E L L+ L ++ N++ E+
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 104 GDLDPLSTLPKLKTLCLLHN 123
P + L L + N
Sbjct: 118 ----PPNLPSSLVELRIHDN 133
Score = 52.7 bits (127), Expect = 9e-08
Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 35/196 (17%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
L L KI I A L + + S N + +I L L L ++NRI ++
Sbjct: 81 YALVLVNNKISKIHE-KAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKV 138
Query: 80 AENLQENLPNLETLILTGNNIQE------------LGDLD---------PLSTLPKLKTL 118
+ + L N+ + + GN ++ L L P L L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL 198
Query: 119 CLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSID 172
L HN + ++ L +++ + N E+ L + +
Sbjct: 199 HLDHNKIQAIELE----DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 173 AGDQALFIMNHRTRLD 188
L + +
Sbjct: 255 RVPAGLPDLKLLQVVY 270
Score = 38.8 bits (91), Expect = 0.003
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 11/88 (12%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--------GFPLLKRLSCLFFNN 73
REL L K+ + L + N+I K+ + + N
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303
Query: 74 NRI--VRIAENLQENLPNLETLILTGNN 99
N + + + + + GN
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQF-GNY 330
Score = 38.8 bits (91), Expect = 0.003
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 63 LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
L+ + C ++ + + + + P+ L L N+I EL D L L L L++
Sbjct: 35 LRVVQC---SDLGLKAVPKEI---SPDTTLLDLQNNDISELRK-DDFKGLQHLYALVLVN 87
Query: 123 NPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKALMNVMF 160
N + AF L +++ L SK L + +
Sbjct: 88 NKISKIHEK----AFSPLRKLQKLYISKNHLVEIPPNLP 122
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 61.9 bits (151), Expect = 2e-10
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
L+L ++ + Q ++D N I K+ + L L L +N + +
Sbjct: 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+++ NL L L N+IQ++ + +P L TL L HN
Sbjct: 88 LSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHN 131
Score = 60.4 bits (147), Expect = 5e-10
Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 13/193 (6%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
LD+ I +E L ++ +N++ ++ F L+ L +N I
Sbjct: 52 TSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
+I N NL TL L+ N + L L L+ L L +N I F
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNN-KIQALKSEELDIF 168
Query: 138 KLPQVKLLDFSKVKLKALMNVMFG-----TEIILSGDSIDAG-DQALFIMNHRTRLDWNF 191
+K L+ S ++K F + L+ + + L + T +
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228
Query: 192 LWGCMFHASRPSA 204
L + +
Sbjct: 229 LSNSQLSTTSNTT 241
Score = 59.6 bits (145), Expect = 8e-10
Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 10/152 (6%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIV 77
L+L KI IE+ + L + +D N+I + + L+ + ++ + N+ +
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Query: 78 RIAENLQENLPNLETLILTGNNIQELGD-LDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
++ N +P+L+ L+L ++ + P L L L L +N + N
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN----DDM 499
Query: 137 FK-LPQVKLLDFSKVKLKALMNVMFGTEIILS 167
+ L ++++LD L L I
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531
Score = 57.7 bits (140), Expect = 4e-09
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 11/114 (9%)
Query: 22 RELDLRGYKIPVIENMGAT---------LDQFDTIDFSNNDIRKI--DGFPLLKRLSCLF 70
LDL+ + + L ++ +N +I + F L L +
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566
Query: 71 FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
N + + ++ N +L++L L N I + L L + NP
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620
Score = 56.9 bits (138), Expect = 7e-09
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 9/110 (8%)
Query: 22 RELDLRGYKI----PVIENMGATLDQFDTIDFSNNDIRKIDG--FPLLK--RLSCLFFNN 73
L L ++ + + SN+ + F LK L+ L +
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 74 NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
N + + + LP LE L NNIQ L L L ++ L L +
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRS 306
Score = 56.2 bits (136), Expect = 1e-08
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
Query: 46 TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPN--LETLILTGNNIQ 101
T+D S+N + L+ L L +NN+I + + N L+ L L+ N I+
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184
Query: 102 ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG 161
E + +L L L + + +L + ++ L S +L N F
Sbjct: 185 EFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243
Score = 55.0 bits (133), Expect = 3e-08
Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 22 RELDLRGYKIPVIEN---MGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRI 76
R L L ++ N +G +D S N++ + D F L +L F N I
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Query: 77 VRIAENLQENLPNLETLILTGNNIQ------ELGDLDP--LSTLPKLKTLCLLHNPVINR 128
+ + L N+ L L + + L +D L L+ L + N +
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344
Query: 129 PHYRLYVAFKLPQVKLLDFS 148
L +K L S
Sbjct: 345 KSNMF---TGLINLKYLSLS 361
Score = 54.6 bits (132), Expect = 3e-08
Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 10/141 (7%)
Query: 22 RELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKI----DGFPLL--KRLSCLFFNNN 74
L++ IP + NM L + SN+ + F L L L N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391
Query: 75 RIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLY 134
+I +I + L +LE L L N I + L + + L +N +
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451
Query: 135 VAFKLPQVKLLDFSKVKLKAL 155
+P ++ L +V LK +
Sbjct: 452 ---LVPSLQRLMLRRVALKNV 469
Score = 50.4 bits (121), Expect = 8e-07
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 45 DTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
+ D S+ + ++ L ++ L +N++ R+ L +L + N I +L
Sbjct: 7 EVADCSHLKLTQVP-DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65
Query: 105 DLDPLSTLPKLKTLCLLHNP 124
+ LP LK L L HN
Sbjct: 66 P-ELCQKLPMLKVLNLQHNE 84
Score = 47.7 bits (114), Expect = 6e-06
Identities = 33/144 (22%), Positives = 47/144 (32%), Gaps = 22/144 (15%)
Query: 22 RELDLRGYKI-----PVIENMGA--TLDQ---FDTIDFSNNDIRKIDGFPL--LKRLSCL 69
L I + + L+ F S + KID F LK L L
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334
Query: 70 FFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLS----TLPKLKTLCLLHNPV 125
+N I I N+ L NL+ L L+ + L L + L L L N +
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS-LRTLTNETFVSLAHSPLHILNLTKNKI 393
Query: 126 INRPHYRLYVAF-KLPQVKLLDFS 148
AF L +++LD
Sbjct: 394 SKIESD----AFSWLGHLEVLDLG 413
Score = 43.1 bits (102), Expect = 2e-04
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 22 RELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVR 78
L+L + + L + ID N++ + F L L N I
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
Query: 79 IAEN-LQENLPNLETLILTGNNIQELGDLDPLSTLPK 114
+ + NL L + N + ++
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFD--CTCESIAWFVN 633
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 60.5 bits (147), Expect = 3e-10
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Query: 30 KIPVIENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENL 87
G T D S + I + F L L N I +I +N L
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 88 PNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLD 146
+L L L+ N + + L KL+ L L +N + +F LP +K L
Sbjct: 323 THLLKLNLSQNFLGSIDS-RMFENLDKLEVLDLSYNHIRALGDQ----SFLGLPNLKELA 377
Query: 147 FSKVKLKALMNVMF 160
+LK++ + +F
Sbjct: 378 LDTNQLKSVPDGIF 391
Score = 56.3 bits (136), Expect = 8e-09
Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 9/141 (6%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI-----DGFPLLKRLSCLFFNNN 74
+ L + ++ L + N ++ +G L+ L+ L N
Sbjct: 57 QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT-LTQCNL 115
Query: 75 RIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLY 134
++ N + L +LE L+L NNI+++ + + L L N V + L
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175
Query: 135 VAFKLPQVKLLDFSKVKLKAL 155
F+ LL S + L+ +
Sbjct: 176 -NFQGKHFTLLRLSSITLQDM 195
Score = 55.5 bits (134), Expect = 2e-08
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIV 77
+L L +I I++ A L ++ S N + ID F L +L L + N I
Sbjct: 302 EQLTLAQNEINKIDD-NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
+ + LPNL+ L L N ++ + D L L+ + L NP
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNP 406
Score = 39.7 bits (93), Expect = 0.001
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 69 LFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ + N I + E L +L+ L + + + L L L L +N
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Score = 32.0 bits (73), Expect = 0.43
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 88 PNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLD 146
++ + L+ N+I EL + S L L+ L + F L + +L
Sbjct: 30 AHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNN---TFRGLSSLIILK 85
Query: 147 FSKVKLKAL 155
+ L
Sbjct: 86 LDYNQFLQL 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 58.1 bits (141), Expect = 7e-10
Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFS-NNDIRKIDG--FPLLKRLSCLF-FNNNRI 76
+ L L + I + + L I S + +++++ F L +++ + N +
Sbjct: 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93
Query: 77 VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVI 126
I + + LP L+ L + ++ DL + + L + NP +
Sbjct: 94 TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM 143
Score = 50.4 bits (121), Expect = 3e-07
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 45 DTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
+ + DI++I P L + I + NLPN+ + ++ + L
Sbjct: 14 EDFRVTCKDIQRIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV--TLQ 69
Query: 105 DLDP--LSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKAL 155
L+ L K+ + + + + A K LP +K L LK
Sbjct: 70 QLESHSFYNLSKVTHIEIRNTRNLTYIDPD---ALKELPLLKFLGIFNTGLKMF 120
Score = 50.4 bits (121), Expect = 3e-07
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 11/86 (12%)
Query: 48 DFSNNDIRKIDGFPLLKRLSCLFF----NNNRIVRIAENLQENLPN-LETLILTGNNIQE 102
N ++ + F +N + I N + L N TL L N
Sbjct: 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170
Query: 103 LGD--LDPLSTLPKLKTLCLLHNPVI 126
+ + KL + L N +
Sbjct: 171 VQGYAFN----GTKLDAVYLNKNKYL 192
Score = 43.8 bits (104), Expect = 4e-05
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 46 TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPN-LETLILTGNNIQE 102
T+ NN + G F K + N + I ++ + + L ++ ++
Sbjct: 160 TLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219
Query: 103 LGDLDPLSTLPKLKTLCLLHNP 124
L P L LK L +
Sbjct: 220 L----PSKGLEHLKELIARNTW 237
Score = 31.1 bits (71), Expect = 0.48
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 22 RELDLRGYKIPVIENMGA-TLDQFDTIDFS-NNDIRKIDG--F-PLLKRLSCLFFNNNRI 76
L L ++ A + D + + N + ID F + S L + +
Sbjct: 159 LTLKLYNNGFTSVQG-YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217
Query: 77 VRIAENLQENLPNLETL 93
+ E+L L
Sbjct: 218 TALPSKGLEHLKELIAR 234
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 58.6 bits (141), Expect = 1e-09
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 50 SNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL--GD 105
+ ++ ++ L L L + + +A + P L L L+ N ++ L
Sbjct: 40 NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99
Query: 106 LDPLSTLPKLKTLCLLHNP 124
+ LS L+ L L NP
Sbjct: 100 VQGLS----LQELVLSGNP 114
Score = 50.1 bits (119), Expect = 5e-07
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 50 SNNDIRKIDGFPLLKRLSCLFF-NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDP 108
+ + + P + L+ L+ N + + L L L + + ++ + D
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DA 75
Query: 109 LSTLPKLKTLCLLHN 123
P+L L L N
Sbjct: 76 FHFTPRLSRLNLSFN 90
Score = 38.6 bits (89), Expect = 0.003
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 86 NLPNLETLILTGNN-IQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVK 143
NL L + +Q L +L L L +L+ L ++ + + AF P++
Sbjct: 29 GAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPD----AFHFTPRLS 83
Query: 144 LLDFSKVKLKALMNVMF 160
L+ S L++L
Sbjct: 84 RLNLSFNALESLSWKTV 100
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 57.8 bits (140), Expect = 3e-09
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
++D N+ I + G L L+ L +N I + +L NL L N + L
Sbjct: 46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL--DLS-QNTNLTYLACDSNKLTNL-- 100
Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
++ L KL L N + + P + L+ ++ L +
Sbjct: 101 --DVTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNCARNTLTEI 142
Score = 55.8 bits (135), Expect = 1e-08
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
+D I ++D +L L+ NN + + ++ + L++L +IQ D
Sbjct: 301 LLDCQAAGITELD-LSQNPKLVYLYLNNTELTEL--DV-SHNTKLKSLSCVNAHIQ---D 353
Query: 106 LDPLSTLPKLKTLCLLHNPVIN 127
+ +P L I
Sbjct: 354 FSSVGKIPALNNNFEAEGQTIT 375
Score = 52.8 bits (127), Expect = 1e-07
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 46 TIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
++ N+I K+D L L C ++N++ I ++ L L + N + EL
Sbjct: 195 RLNCDTNNITKLDLNQNIQLTFLDC---SSNKLTEI--DV-TPLTQLTYFDCSVNPLTEL 248
Query: 104 GDLDPLSTLPKLKTLCLLHNP 124
+STL KL TL +
Sbjct: 249 ----DVSTLSKLTTLHCIQTD 265
Score = 50.5 bits (121), Expect = 6e-07
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKID--GFPLLKRLSCLFFNNNRIVRI 79
D + ++ +TL + T+ D+ +ID L + + +
Sbjct: 236 TYFDCSVNPLTELDV--STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV 293
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ L L I EL LS PKL L L +
Sbjct: 294 T-----HNTQLYLLDCQAAGITEL----DLSQNPKLVYLYLNNT 328
Score = 47.4 bits (113), Expect = 6e-06
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 15/134 (11%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L K+ ++ L + ++ N + K+D L+ L N + I
Sbjct: 88 TYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDV 144
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
+ L L N D ++ +L TL N + L V+ +
Sbjct: 145 ---SHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-----LDVS-QNKL 192
Query: 142 VKLLDFSKVKLKAL 155
+ L+ + L
Sbjct: 193 LNRLNCDTNNITKL 206
Score = 42.4 bits (100), Expect = 2e-04
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 63 LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
F I+ +E L L +L ++I D+ + L L L
Sbjct: 20 FASEVAAAFEMQATDTIS---EEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTS 73
Query: 123 N 123
N
Sbjct: 74 N 74
Score = 38.1 bits (89), Expect = 0.004
Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
++ N I+ + L+ F + + + + N N T+ ++ + + + G
Sbjct: 343 SLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTN--NSLTIAVSPDLLDQFG- 399
Query: 106 LDPLSTLPKLKTLCLLHNPVIN 127
+P++ P + I
Sbjct: 400 -NPMNIEPGDGGVYDQATNTIT 420
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 58.1 bits (141), Expect = 3e-09
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 46 TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
+D S N +R + F L L + I I + ++L +L TLILTGN IQ L
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91
Query: 104 GDLDPLSTLPKLKTLCLLHN 123
L S L L+ L +
Sbjct: 92 -ALGAFSGLSSLQKLVAVET 110
Score = 54.6 bits (132), Expect = 4e-08
Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 24/130 (18%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQE-------------------N 86
+ + I ++ F L N + + + +
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345
Query: 87 LPNLETLILTGNNIQELGDLDP-LSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLL 145
LP+LE L L+ N + G LK L L N VI L Q++ L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS----NFLGLEQLEHL 401
Query: 146 DFSKVKLKAL 155
DF LK +
Sbjct: 402 DFQHSNLKQM 411
Score = 54.3 bits (131), Expect = 4e-08
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 46 TIDFSNNDIRKIDGFPL----LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ 101
+D S N + L L + N ++ ++ N L LE L +N++
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLK 409
Query: 102 ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
++ + +L L L + H + L +++L +
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMA 453
Score = 54.3 bits (131), Expect = 5e-08
Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 29/131 (22%)
Query: 22 RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIV 77
LDL +D S N + + F L++L L F ++ +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409
Query: 78 RIAE--------NLQ-----------------ENLPNLETLILTGNNIQELGDLDPLSTL 112
+++E NL L +LE L + GN+ QE D + L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 113 PKLKTLCLLHN 123
L L L
Sbjct: 470 RNLTFLDLSQC 480
Score = 53.9 bits (130), Expect = 6e-08
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 6/108 (5%)
Query: 22 RELDLRGYKI--PVIENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIV 77
L + G + ++ L +D S + ++ F L L L ++N
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPK-LKTLCLLHNP 124
+ + L +L+ L + N+I L P L L L N
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQND 554
Score = 53.1 bits (128), Expect = 1e-07
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 22 RELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
+ LDL +I IE+ +L T+ + N I+ + F L L L +
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ +L L+ L + N IQ + S L L+ L L N
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 49.6 bits (119), Expect = 1e-06
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 46 TIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRIAE-NLQENLPNLETLILTGNNIQE 102
+ ++ ++ FP+ LK L L +N I NL NLE L L+ N IQ
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Query: 103 L--GDLDPLSTLPKLK-TLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
+ DL L +P L +L L NP+ AFK ++ L
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG----AFKEIRLHKLTLR 208
Score = 47.7 bits (114), Expect = 5e-06
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ L+L K + L + F++N L L L + N +
Sbjct: 307 QHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364
Query: 82 --NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+L+ L L+ N + + L +L+ L H+
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHS 406
Score = 45.8 bits (109), Expect = 2e-05
Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 46 TIDFSNNDIRKIDGFP--LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
T + KI P L L + N + + + P L+ L L+ IQ +
Sbjct: 11 TYQCMELNFYKI---PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMFG 161
D +L L TL L NP+ + AF L ++ L + L +L N G
Sbjct: 68 EDGA-YQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIG 121
Score = 45.8 bits (109), Expect = 2e-05
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 16/115 (13%)
Query: 22 RELDLRGYKI--PVIENMGATLDQFDTIDFSNNDIRK--------IDGFPLLKRLSCLFF 71
+L LR V++ L + + R L L+ F
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 72 NNNRIVRIAENLQE---NLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ +++ + L N+ + L I+ + S + L L++
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNC 314
Score = 37.7 bits (88), Expect = 0.007
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 9/142 (6%)
Query: 22 RELDLRGYKIPVIE--NMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFN----N 73
+EL++ I + + L + +D S+N I+ I +L ++ L +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 74 NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRL 133
N + I + + L L L N + L L+ L+ N +
Sbjct: 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245
Query: 134 YVAFKLPQVKLLDFSKVKLKAL 155
+ L + L + +L L
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYL 267
Score = 37.7 bits (88), Expect = 0.008
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 46 TIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVRIAEN-LQENLPNLETLILTGNNIQ 101
++ S+N+ +D FP L L L ++ N I+ + LQ +L L LT N+
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 55.4 bits (134), Expect = 5e-09
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Query: 45 DTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQE 102
I N I+ I F K+L + +NN+I +A + + L +L +L+L GN I E
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 103 L--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKALMNVM 159
L + L L+ L L N + AF L + LL KL+ +
Sbjct: 95 LPKSLFEG---LFSLQLLLLNANKINCLRVD----AFQDLHNLNLLSLYDNKLQTIAKGT 147
Query: 160 F 160
F
Sbjct: 148 F 148
Score = 50.8 bits (122), Expect = 1e-07
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIV 77
R +DL +I + A L +++ N I ++ F L L L N N+I
Sbjct: 59 RRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
+ + ++L NL L L N +Q + S L ++T+ L NP
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNP 163
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 54.7 bits (132), Expect = 9e-09
Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 27/134 (20%)
Query: 18 PVKDRELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI-DG-FPLLKRLSCLFFNN 73
P EL L + V+E G L Q I+FSNN I I +G F ++ + +
Sbjct: 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90
Query: 74 NRIVRIAENLQENLPNLETLILTGNNIQE--------LGDLDPLS--------------- 110
NR+ + + + L +L+TL+L N I L + LS
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 111 TLPKLKTLCLLHNP 124
TL L TL LL NP
Sbjct: 151 TLHSLSTLNLLANP 164
Score = 54.3 bits (131), Expect = 1e-08
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 13/122 (10%)
Query: 45 DTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ 101
+ +NN+ + F L +L + F+NN+I I E E + ++LT N ++
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 102 EL--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKALMNV 158
+ L LKTL L N + + +F L V+LL ++ +
Sbjct: 95 NVQHKMFKG---LESLKTLMLRSNRITCVGND----SFIGLSSVRLLSLYDNQITTVAPG 147
Query: 159 MF 160
F
Sbjct: 148 AF 149
Score = 33.9 bits (78), Expect = 0.070
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 88 PNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLD 146
L L N L LP+L+ + +N + + AF V +
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEIL 87
Query: 147 FSKVKLKALMNVMF 160
+ +L+ + + MF
Sbjct: 88 LTSNRLENVQHKMF 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 55.8 bits (135), Expect = 1e-08
Identities = 23/134 (17%), Positives = 53/134 (39%), Gaps = 19/134 (14%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ + + ++ +L+ +I NN + ++ L L+ ++ +NN + +
Sbjct: 198 TAIYADNNSLKKLPDLPLSLE---SIVAGNNILEELPELQNLPFLTTIYADNNLL----K 250
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
L + P+LE L + N + +L +L L L + N P
Sbjct: 251 TLPDLPPSLEALNVRDNYLTDLPEL-----PQSLTFLDVSENIFSGLSEL-------PPN 298
Query: 142 VKLLDFSKVKLKAL 155
+ L+ S ++++L
Sbjct: 299 LYYLNASSNEIRSL 312
Score = 53.5 bits (129), Expect = 7e-08
Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+ +D+ + + + + I NN + ++ L L+ ++ +NN + +
Sbjct: 156 KIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL----K 208
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
L + +LE+++ N ++E L L LP L T+ +N + P P
Sbjct: 209 KLPDLPLSLESIVAGNNILEE---LPELQNLPFLTTIYADNNLLKTLPD-------LPPS 258
Query: 142 VKLLDFSKVKLKAL 155
++ L+ L L
Sbjct: 259 LEALNVRDNYLTDL 272
Score = 50.8 bits (122), Expect = 4e-07
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
+ SNN + K+ L + +NN + + L + P+LE + N ++E
Sbjct: 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSL----KKLPDLPPSLEFIAAGNNQLEE--- 187
Query: 106 LDPLSTLPKLKTLCLLHN 123
L L LP L + +N
Sbjct: 188 LPELQNLPFLTAIYADNN 205
Score = 48.8 bits (117), Expect = 2e-06
Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 21/135 (15%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIA 80
EL+L + + +++ S N + ++ + LK L N
Sbjct: 74 HELELNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA----- 125
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
L + P LE L ++ N +++ L L LK + + +N + P P
Sbjct: 126 --LSDLPPLLEYLGVSNNQLEK---LPELQNSSFLKIIDVDNNSLKKLPD-------LPP 173
Query: 141 QVKLLDFSKVKLKAL 155
++ + +L+ L
Sbjct: 174 SLEFIAAGNNQLEEL 188
Score = 46.5 bits (111), Expect = 1e-05
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
+D S N + P L L ++N I +L + P+LE L ++ N + EL
Sbjct: 281 FLDVSENIFSGLSELP--PNLYYLNASSNEI----RSLCDLPPSLEELNVSNNKLIEL-- 332
Query: 106 LDPLSTLPKLKTLCLLHN 123
P + P+L+ L N
Sbjct: 333 --P-ALPPRLERLIASFN 347
Score = 46.5 bits (111), Expect = 1e-05
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
++ S+N+IR + L L L +NN++ L P LE LI + N++ E+ +
Sbjct: 301 YLNASSNEIRSL--CDLPPSLEELNVSNNKL----IELPALPPRLERLIASFNHLAEVPE 354
Query: 106 LDPLSTLPKLKTLCLLHNP 124
L LK L + +NP
Sbjct: 355 L-----PQNLKQLHVEYNP 368
Score = 41.5 bits (98), Expect = 4e-04
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
+ N +R+ + + + L N++ + E NL+ L + N ++E D
Sbjct: 361 QLHVEYNPLREFP--DIPESVEDLRMNSHL-----AEVPELPQNLKQLHVETNPLREFPD 413
Query: 106 LDPLSTLPKLKTLCLLHNPVINRP 129
+ ++ L + V++
Sbjct: 414 I-----PESVEDLRMNSERVVDPY 432
Score = 40.7 bits (96), Expect = 6e-04
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
+ N +R+ + + + L N+ R+V E E LE + ++
Sbjct: 400 QLHVETNPLREFP--DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452
Score = 38.8 bits (91), Expect = 0.003
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
L+ +I + ++ +L+ ++ SNN + ++ L RL L + N +
Sbjct: 300 YYLNASSNEIRSLCDLPPSLE---ELNVSNNKLIELP--ALPPRLERLIASFNHL----A 350
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLL 121
+ E NL+ L + N ++E D+ ++ L+ L
Sbjct: 351 EVPELPQNLKQLHVEYNPLREFPDI--PESVEDLRMNSHL 388
Score = 38.4 bits (90), Expect = 0.004
Identities = 12/102 (11%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
++L + + ++ +++ N+ + ++ L + L L N +
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLR----MNSHLAEV--PELPQNLKQLHVETNPL----R 409
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ ++E L + + + + T KL+ H+
Sbjct: 410 EFPDIPESVEDLRMNSERVVDPYEF-AHETTDKLEDDVFEHH 450
Score = 32.7 bits (75), Expect = 0.22
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 19/99 (19%)
Query: 39 ATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIA------------ENLQE 85
+ ++++ ++ +K + + + R A L++
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 86 NLP-NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
L L L + L +L P L++L N
Sbjct: 68 CLDRQAHELELNNLGLSSLPEL-----PPHLESLVASCN 101
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 54.9 bits (132), Expect = 1e-08
Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 12/166 (7%)
Query: 2 VKLTADLIVQCMQYTNPVKDRELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKID 58
++ + ++ ++ +EL L + AT + ++ N D
Sbjct: 78 ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137
Query: 59 GFP------LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ---ELGDLDPL 109
+ L L L + + P L TL L+ N L
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197
Query: 110 STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
P L+ L L + + +A Q++ LD S L+
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243
Score = 46.4 bits (110), Expect = 9e-06
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 10/112 (8%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDG---------FPLLKRLSCLFF 71
+ L + T+D S+N G FP L+ L+
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211
Query: 72 NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ L L+ L L+ N++++ +L +L L
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263
Score = 43.3 bits (102), Expect = 8e-05
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 48 DFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
D S+N +R +L+ L + + ++ + L L L L+ N +
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL---PAKLSVLDLSYNRLDR-- 288
Query: 105 DLDPLSTLPKLKTLCLLHNP 124
LP++ L L NP
Sbjct: 289 -NPSPDELPQVGNLSLKGNP 307
Score = 36.4 bits (84), Expect = 0.014
Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 13/112 (11%)
Query: 47 IDFSNNDIRKIDGFPLLK-----RLSCLFFNNNRIVRIA--ENLQENLPNLETLILTGNN 99
+ I F L+ L L N + A L+ P+L L L +
Sbjct: 73 LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132
Query: 100 IQELGDLDPLS---TLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
P LK L + +N ++ P + LD S
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR---VFPALSTLDLS 181
Score = 35.3 bits (81), Expect = 0.035
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQE 102
+++ S ++++ L +LS L + NR+ R + LP + L L GN +
Sbjct: 257 SLNLSFTGLKQVPK-GLPAKLSVLDLSYNRLDRNPSPDE--LPQVGNLSLKGNPFLD 310
Score = 27.6 bits (61), Expect = 7.6
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIV 77
L+L + + + + A L +D S N + + L ++ L N +
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL 309
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 53.6 bits (129), Expect = 4e-08
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 16/155 (10%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG-FPLLKRLSCLFFNNNRIVRIA 80
+L+L ++ ++ + TL T+D S+N ++ + L L+ L + NR+ +
Sbjct: 58 TQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 81 ENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF- 137
L L+ L L GN ++ L G L P PKL+ L L +N + P
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTP---TPKLEKLSLANNNLTELPAG----LLN 169
Query: 138 KLPQVKLLDFSKVKLKALMNVMFG----TEIILSG 168
L + L + L + FG L G
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204
Score = 51.6 bits (124), Expect = 2e-07
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 18 PVKDRELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRI 76
P L L + + ++ ++ K+ L L L ++N++
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89
Query: 77 VRIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHN 123
+ Q LP L L ++ N + L G L L +L+ L L N
Sbjct: 90 QSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRG---LGELQELYLKGN 134
Score = 42.8 bits (101), Expect = 1e-04
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 69 LFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR 128
L + N + + L L L + +L LP L TL L HN + +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT---LPVLGTLDLSHNQLQSL 92
Query: 129 PHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
P + LP + +LD S +L +L
Sbjct: 93 P-----LLGQTLPALTVLDVSFNRLTSL 115
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 53.1 bits (128), Expect = 5e-08
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 48 DFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
D S N +R + F L L + I I + ++L +L TLILTGN IQ L
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-A 92
Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
L S L L+ L + + + + + L +K L+ + +++
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSF 139
Score = 51.9 bits (125), Expect = 1e-07
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIV 77
+ LDL +I IE+ GA +L T+ + N I+ + F L L L +
Sbjct: 55 QVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ +L L+ L + N IQ + S L L+ L L N
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 50.4 bits (121), Expect = 3e-07
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPL--LKRLSCLFFNNNRIVR 78
L L G I + + L + ++ ++ FP+ LK L L +N I
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 79 IAE-NLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLK-TLCLLHNPVINRPHYRLY 134
NL NLE L L+ N IQ + DL L +P L +L L NP+
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--- 195
Query: 135 VAFKLPQVKLLDFSKVKLKALMNVMF 160
AFK ++K L +LK++ + +F
Sbjct: 196 -AFKEIRLKELALDTNQLKSVPDGIF 220
Score = 50.4 bits (121), Expect = 3e-07
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 16 TNPVKDRELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI-----DGFPLLKRLSC 68
+ +EL++ I + L + +D S+N I+ I + L+
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180
Query: 69 -LFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
L + N + I + + L+ L L N ++ + D L L+ + L NP
Sbjct: 181 SLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNP 235
Score = 43.4 bits (103), Expect = 7e-05
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 69 LFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR 128
L + N + + + P L+ L L+ IQ + + +L L TL L NP+ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSL 91
Query: 129 PHYRLYVAF-KLPQVKLLDFSKVKLKALMNVMFG 161
AF L ++ L + L +L N G
Sbjct: 92 AL----GAFSGLSSLQKLVAVETNLASLENFPIG 121
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 53.5 bits (129), Expect = 7e-08
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 46 TIDFSNNDIRK-IDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
++ N + + F +L+ L N+I I N +E L N ++ +
Sbjct: 334 MLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393
Query: 105 DLDPLSTLPKLKTLCLLHNP 124
++ ++ + + +N
Sbjct: 394 NIFDAKSVSVMSAIDFSYNE 413
Score = 48.9 bits (117), Expect = 2e-06
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 46 TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQE-------NLPNLETLILT 96
+I+ SNN I K + F LS + N + I +N + N L ++ L
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496
Query: 97 GNNIQELGDLDPLSTLPKLKTLCLLHN 123
N + +L D +TLP L + L +N
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYN 523
Score = 47.0 bits (112), Expect = 8e-06
Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 17/115 (14%)
Query: 22 RELDLRGYKIP-VIENMGATLDQFDTIDFSNNDIRKI---------DGFPLLKRLSCLFF 71
++L +I + + +T +I+ N + +I + F L+ +
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495
Query: 72 NNNRIVRIAENLQE-NLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHN 123
N++ +++++ + LP L + L+ N+ + P LK + +
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF----PTQPLNSSTLKGFGIRNQ 546
Score = 44.6 bits (106), Expect = 5e-05
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 11/86 (12%)
Query: 46 TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIV---RIAENLQE---NLPNLETLILTGN 98
ID S N K L N R R E P+L L + N
Sbjct: 517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHNP 124
+I+++ P + L + NP
Sbjct: 577 DIRKV----NEKITPNISVLDIKDNP 598
Score = 44.3 bits (105), Expect = 6e-05
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 19/120 (15%)
Query: 22 RELDLRG---YKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPL---------LKRLSCL 69
L IP I + ++ IDFS N+I +DG +S +
Sbjct: 380 ENLSFAHNKLKYIPNIFDAK-SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
Query: 70 FFNNNRIVRIAENLQENLPNLETLILTGNNIQEL------GDLDPLSTLPKLKTLCLLHN 123
+NN+I + + L L ++ L GN + E+ + + L ++ L N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498
Score = 44.3 bits (105), Expect = 6e-05
Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 33 VIENMGATLDQFDTIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVRIAENLQENLP- 88
+ N +Q + + F++N ++ I + +S + F+ N I + + L
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427
Query: 89 ------NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
N+ ++ L+ N I + + ST L ++ L+ N
Sbjct: 428 TPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGN 467
Score = 43.5 bits (103), Expect = 1e-04
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 49 FSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQE--------NLPNLETLILTGNN 99
++ ++ K+ L + + NR + + + ++ + + NN
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316
Query: 100 IQELGDLDPLSTLPKLKTLCLLHN 123
++ L + KL L L+N
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYN 340
Score = 41.2 bits (97), Expect = 7e-04
Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 43 QFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQ-ENLPNLETLILTGNNIQ 101
+ + + +D + + P+ +++ ++ N + + + L L N ++
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343
Query: 102 ELGDLDPLSTLPKLKTLCLLHN 123
L + KL +L L +N
Sbjct: 344 GK--LPAFGSEIKLASLNLAYN 363
Score = 36.9 bits (86), Expect = 0.012
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
+ +NDIRK++ + +S L +N + I + +L + Q++
Sbjct: 570 QLQIGSNDIRKVNE-KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628
Query: 106 LDPL 109
D L
Sbjct: 629 CDAL 632
Score = 35.8 bits (83), Expect = 0.026
Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 18/148 (12%)
Query: 22 RELDL-----RGYKIPVIENMGATLDQFDTIDFSNNDIRK--IDGFPLLK--RLSCLFFN 72
L L + + + + +K +D P L N
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167
Query: 73 NNRIVRIAENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHN---PVIN 127
++ + + + NNI + + L KL+ + ++
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFV----SKAVMRLTKLRQFYMGNSPFVAENI 223
Query: 128 RPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
+ + Q K D LK L
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDL 251
Score = 35.0 bits (81), Expect = 0.043
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 28/135 (20%)
Query: 47 IDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIV-------RIAENLQ------------EN 86
I +N+I + L +L + N+ V EN + +N
Sbjct: 188 IGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247
Query: 87 LPNLETLILTGNNIQELGDLDP-LSTLPKLKTLCLLHN-----PVINRPHYRLYVAFKLP 140
L +L + + L L L LP+++ + + N + L A
Sbjct: 248 LKDLTDVEVYNCPN--LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305
Query: 141 QVKLLDFSKVKLKAL 155
+++++ LK
Sbjct: 306 KIQIIYIGYNNLKTF 320
Score = 33.1 bits (76), Expect = 0.21
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 63 LKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLL 121
R++ L R+ + + L LE L L + + L + +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 122 HN 123
Sbjct: 139 QK 140
Score = 28.9 bits (65), Expect = 4.3
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 86 NLPNLETLILTGNNIQELGDLDP-LSTLPKLKTLCLLHN 123
+ + L L G G + + L +L+ L L +
Sbjct: 79 SNGRVTGLSLEGFGAS--GRVPDAIGQLTELEVLALGSH 115
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 53.3 bits (128), Expect = 7e-08
Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 16/161 (9%)
Query: 48 DFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
+ S N I ++ L +L L ++NRI + ++ + LE L L+ N + ++
Sbjct: 27 NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-- 84
Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFS-----KVKLKALMNVM 159
LK L L N P + F + Q+K L S K + + ++
Sbjct: 85 --SCHPTVNLKHLDLSFNAFDALPICKE---FGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 160 FGTEIILSGDSIDAGDQALFIMNHRT-RLDWNFLWGCMFHA 199
+++ G++ + + + T L F FH
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180
Score = 45.2 bits (107), Expect = 3e-05
Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 41 LDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQ--ENLPNLETLILT 96
+ F +DFSNN + + L L L N++ +++ + + +L+ L ++
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382
Query: 97 GNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYV------------------AFK 138
N++ S L +L + N + + L K
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK 442
Query: 139 LPQVKLLDFSKVKLKAL 155
L ++ L+ + +LK++
Sbjct: 443 LEALQELNVASNQLKSV 459
Score = 44.9 bits (106), Expect = 4e-05
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 3/117 (2%)
Query: 40 TLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN 99
+ S + + + L F+NN + +L LETLIL N
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359
Query: 100 IQELGDL-DPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
++EL + + + + L+ L + N V + L+ S L
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS--WTKSLLSLNMSSNILTDT 414
Score = 44.1 bits (104), Expect = 7e-05
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 22 RELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRI 79
++LD+ + E G +++ S+N + L R+ L ++N+I I
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI 436
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
+ + L L+ L + N ++ + D L L+ + L NP
Sbjct: 437 PKQV-VKLEALQELNVASNQLKSVPD-GIFDRLTSLQKIWLHTNP 479
Score = 36.0 bits (83), Expect = 0.022
Identities = 14/165 (8%), Positives = 46/165 (27%), Gaps = 10/165 (6%)
Query: 1 MVKLTADLIVQCMQYTNPVKDREL---DLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI 57
++ T + ++ +Q +++ + + +
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288
Query: 58 D-----GFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTL 112
+ + ++ F + + + L + N + + + L
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT-VFENCGHL 347
Query: 113 PKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMN 157
+L+TL L N + ++ ++ LD S+ +
Sbjct: 348 TELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEK 391
Score = 34.1 bits (78), Expect = 0.089
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 16 TNPVKDRELDLRGYKIPVIENMGATLDQFDT----IDFSNNDIRKI-DGFPLLKRLSCLF 70
+ L++ + +D +N I+ I L+ L L
Sbjct: 396 SWTKSLLSLNMSSNILTDT-----IFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELN 450
Query: 71 FNNNRIVRIAENLQENLPNLETLILTGNN 99
+N++ + + + + L +L+ + L N
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNP 479
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 51.4 bits (123), Expect = 3e-07
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 45 DTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
+ + +I P + L F ++ I + +LE + ++ N++ E+
Sbjct: 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDFSKVKLKALMNVMF 160
+ D S LPKL + + + + AF+ LP ++ L S +K L +V
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLLYINPE---AFQNLPNLQYLLISNTGIKHLPDVHK 124
Score = 50.6 bits (121), Expect = 4e-07
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 46 TIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
+ + N I++I F + +NN + + ++ L ++ I L
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217
Query: 104 GDLDPLSTLPKLKTLCLLHN 123
L L KL+ +
Sbjct: 218 PS-YGLENLKKLRARSTYNL 236
Score = 45.6 bits (108), Expect = 2e-05
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 9/130 (6%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFS-NNDIRKIDGFP---LLKRLSCLFFNNNRI 76
+ L + I + + Q +D N +I I+ L L+ N N I
Sbjct: 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166
Query: 77 VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVA 136
I + E + NN++EL + D L + + + P Y L
Sbjct: 167 QEIHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHSLPSYGLE-- 223
Query: 137 FKLPQVKLLD 146
L +++
Sbjct: 224 -NLKKLRARS 232
Score = 44.8 bits (106), Expect = 3e-05
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 12/109 (11%)
Query: 46 TIDFSN-NDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN-IQ 101
I N++ I + F L L L +N I + + + + L + N I
Sbjct: 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142
Query: 102 EL--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
+ LS + L L N + + AF Q+ L+ S
Sbjct: 143 TIERNSFVGLS--FESVILWLNKNGIQEIHNS----AFNGTQLDELNLS 185
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 47.3 bits (113), Expect = 2e-06
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 18 PVKDRELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKI-DG-FPLLKRLSCLFFNN 73
P+ EL L ++ I + G L ++ N + I F + L
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 74 NRIVRIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHNP 124
N+I I+ + L L+TL L N I + G + L L +L L NP
Sbjct: 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE---HLNSLTSLNLASNP 137
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 48.3 bits (115), Expect = 3e-06
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 48 DFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
S N I ++ L L L ++NRI + ++ +LE L ++ N +Q +
Sbjct: 58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-- 115
Query: 106 LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
+ L+ L L N P + F L ++ L S K + L
Sbjct: 116 --SCCPMASLRHLDLSFNDFDVLP---VCKEFGNLTKLTFLGLSAAKFRQL 161
Score = 38.3 bits (89), Expect = 0.004
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 62 LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLC 119
L ++ L +NNRI+ I +++ +L L+ L + N ++ + G D L L+ +
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVFDR---LTSLQYIW 503
Query: 120 LLHNP 124
L NP
Sbjct: 504 LHDNP 508
Score = 36.4 bits (84), Expect = 0.016
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 41 LDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
+ + S +D I P + L F N L L+TLIL N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387
Query: 99 NIQELGDL-DPLSTLPKLKTLCLLHN 123
++ + + L+TL + N
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLN 413
Score = 35.6 bits (82), Expect = 0.027
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 48 DFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN 99
D NN I I L+ L L +N++ + + + + L +L+ + L N
Sbjct: 456 DLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Score = 33.7 bits (77), Expect = 0.14
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 4/96 (4%)
Query: 63 LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
LK L N + E L + +L+ ++ + + + L
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQ 362
Query: 123 NPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNV 158
N + L +++ L + LK V
Sbjct: 363 NVFTDSV---FQGCSTLKRLQTLILQRNGLKNFFKV 395
Score = 32.2 bits (73), Expect = 0.41
Identities = 23/135 (17%), Positives = 40/135 (29%), Gaps = 32/135 (23%)
Query: 18 PVKDRELDLRGYKIPVIENMG-ATLDQFDTIDFSNNDIRKIDG-FPLLKRLSCLFFNNNR 75
P L+ G +TL + T+ N ++ + K +S L +
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 76 IVRIAE----------------NLQEN----------LPNLETLILTGNNIQEL-GDLDP 108
+ + NL N P ++ L L N I + D+
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH 471
Query: 109 LSTLPKLKTLCLLHN 123
L L+ L + N
Sbjct: 472 ---LQALQELNVASN 483
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 45.5 bits (109), Expect = 4e-06
Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 10/106 (9%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRI 79
+L ++ + +G L + + ++ ++ L S L + R+
Sbjct: 7 SKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRL 65
Query: 80 AENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHN 123
+ LP L + L + LP+ L ++
Sbjct: 66 KAAV-GELPEKSKLQEIYQELTRL----KAAVGELPEKSKLQEIYQ 106
Score = 42.1 bits (100), Expect = 7e-05
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 8/79 (10%)
Query: 48 DFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL 106
++ ++ L S L + R+ + LP L + EL
Sbjct: 56 QEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIYQELTEL--- 111
Query: 107 DP--LSTLPKLKTLCLLHN 123
+ LP+ L ++
Sbjct: 112 -KAAVGELPEKSKLQEIYQ 129
Score = 37.4 bits (88), Expect = 0.003
Identities = 6/57 (10%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 48 DFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
++ ++ L S L + ++ + LP+ + +L
Sbjct: 102 QEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAV-GELPDQSKQQQIYQELTDL 157
Score = 31.7 bits (73), Expect = 0.24
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 6/40 (15%)
Query: 86 NLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLCLLHN 123
LP L + L + LP+ L ++
Sbjct: 2 ELPEKSKLQEIYQELTRL----KAAVGELPEKSKLQEIYQ 37
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 45.8 bits (109), Expect = 6e-06
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DG-FPLLKRLSCLFFNNNR 75
P EL L G + ++ + ID SNN I + + F + +L L + NR
Sbjct: 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 76 IVRIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHNP 124
+ I + L +L L L GN+I + G + LS L L + NP
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS---ALSHLAIGANP 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 47.2 bits (112), Expect = 7e-06
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
+EL + G ++ ++ + + S N + + L L L N++ R+ E
Sbjct: 224 KELIVSGNRL---TSLPVLPSELKELMVSGNRLTSLP--MLPSGLLSLSVYRNQLTRLPE 278
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHY 131
+L +L + T+ L GN + E L L ++ + P+I
Sbjct: 279 SL-IHLSSETTVNLEGNPLSER----TLQALREITSAPGYSGPIIRFDMA 323
Score = 46.4 bits (110), Expect = 1e-05
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 13/109 (11%)
Query: 17 NPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFP--LLKRLSCLFFNNN 74
E R + + + ++ + + + P L ++ L +N
Sbjct: 17 RAAPAEESRGRAAVVQKMRA--CLNNGNAVLNVGESGLTTL---PDCLPAHITTLVIPDN 71
Query: 75 RIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ +L P L TL ++GN + L L L +L
Sbjct: 72 NL----TSLPALPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLT 114
Score = 45.7 bits (108), Expect = 2e-05
Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 34/166 (20%)
Query: 7 DLIVQCMQYTNPVKDRELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPLLKR 65
+VQ M+ + L++ + + + + A + T+ +N++ + L
Sbjct: 28 AAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHIT---TLVIPDNNLTSLP--ALPPE 82
Query: 66 LSCLFFNNNRIVRIAE----------------NLQENLPNLETLILTGNNIQELGDLDPL 109
L L + N++ + +L L L + GN + L L
Sbjct: 83 LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL--- 139
Query: 110 STLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
P L+ L + N + + P ++ L +L +L
Sbjct: 140 --PPGLQELSVSDNQLASLPAL-------PSELCKLWAYNNQLTSL 176
Score = 45.7 bits (108), Expect = 2e-05
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIA 80
+L + G ++ + + S+N + + L +L NN++
Sbjct: 124 CKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAY---NNQL---- 173
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+L L+ L ++ N + L L +L L +N
Sbjct: 174 TSLPMLPSGLQELSVSDNQLASLPTL-----PSELYKLWAYNN 211
Score = 44.9 bits (106), Expect = 4e-05
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 46 TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
+ S+N + + L +L NNR+ +L L+ LI++GN + L
Sbjct: 185 ELSVSDNQLASLPTLPSELYKLWAY---NNRL----TSLPALPSGLKELIVSGNRLTSLP 237
Query: 105 DLDPLSTLPKLKTLCLLHN 123
L +LK L + N
Sbjct: 238 VL-----PSELKELMVSGN 251
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 46.5 bits (110), Expect = 1e-05
Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 22/135 (16%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIA 80
EL L + + +N+ + ++ + N + + L L L +NR+
Sbjct: 62 SELQLNRLNLSSLPDNLPPQIT---VLEITQNALISLP--ELPASLEYLDACDNRL---- 112
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
L E +L+ L + N + L +L L+ + +N + P
Sbjct: 113 STLPELPASLKHLDVDNNQLTMLPEL-----PALLEYINADNNQLTMLPE-------LPT 160
Query: 141 QVKLLDFSKVKLKAL 155
+++L +L L
Sbjct: 161 SLEVLSVRNNQLTFL 175
Score = 43.0 bits (101), Expect = 1e-04
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 48 DFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL 106
D NN + + + LL+ ++ +NN++ + E +LE L + N + L +L
Sbjct: 126 DVDNNQLTMLPELPALLEYINA---DNNQLTMLPELPT----SLEVLSVRNNQLTFLPEL 178
Query: 107 DPLSTLPKLKTLCLLHN 123
L+ L + N
Sbjct: 179 -----PESLEALDVSTN 190
Score = 40.3 bits (94), Expect = 0.001
Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 13/118 (11%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-----DGFPLLKRLSCLFFNNNRI 76
L +R ++ + + + +D S N + + + NRI
Sbjct: 163 EVLSVRNNQLTFLP---ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219
Query: 77 VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLY 134
I EN+ +L T+IL N + +L + H P I
Sbjct: 220 THIPENIL-SLDPTCTIILEDNPLSSR----IRESLSQQTAQPDYHGPRIYFSMSDGQ 272
Score = 37.3 bits (86), Expect = 0.010
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 63 LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
LS F N I + E L G N E L + + L L
Sbjct: 10 NFSLSQNSFYNT-ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNR 68
Query: 123 NPVINRPHYRLYVAFKLPQVKLLDFSKVKLKAL 155
+ + P PQ+ +L+ ++ L +L
Sbjct: 69 LNLSSLP------DNLPPQITVLEITQNALISL 95
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 45.3 bits (108), Expect = 2e-05
Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 46 TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
++ + + + D L L + + ++ + + + + LETL L N ++ L
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRAL- 142
Query: 105 DLDP--LSTLPKLKTLCLLHNPVINR-PH-----YRLYVAFKLPQVKLLDFSKVKLKAL 155
P +++L +L+ L + P + P L ++ L +++L
Sbjct: 143 ---PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Score = 43.0 bits (102), Expect = 1e-04
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 22 RELDLRGY----KIP-VIENMGATLDQFD-----TIDFSNNDIRKI-DGFPLLKRLSCLF 70
REL +R ++P + + A+ + ++ IR + L+ L L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK 212
Query: 71 FNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL-DPLSTLPKLKTLCLLHN 123
N+ + + + +LP LE L L G L + LK L L
Sbjct: 213 IRNSPLSALGPAI-HHLPKLEELDLRGCT--ALRNYPPIFGGRAPLKRLILKDC 263
Score = 34.1 bits (79), Expect = 0.079
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 63 LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
L + + + A N N + TG ++ DL +T P L L
Sbjct: 32 LSQWQRHYNADRNRWHSAWRQ-ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS 90
Query: 123 NP 124
P
Sbjct: 91 VP 92
Score = 28.4 bits (64), Expect = 4.9
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 50 SNNDIRKI-DGFPLLKRLSCLFF-NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLD 107
+++ + L +L L + R+ + LP +++ + +L
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQAQLDQHR 320
Query: 108 PLSTLPKL 115
P++ P
Sbjct: 321 PVA-RPAE 327
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 45.0 bits (107), Expect = 2e-05
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 16 TNPVKDRELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFF 71
V EL L ++ + +L + + N+++ + F L L L
Sbjct: 106 DQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164
Query: 72 NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
NN++ R+ E + L L+TL L N ++ + + +L KLK L L NP
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENP 216
Score = 44.6 bits (106), Expect = 3e-05
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 22 RELDLRGYKIPVI-ENMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
L + K+ + + L + N ++ + F L +L+ L N +
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 79 IAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHNPVINRPH 130
+ + + + L +L+ L L N ++ + G D L+ +LKTL L +N + P
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT---ELKTLKLDNNQLKRVPE 198
Score = 43.4 bits (103), Expect = 7e-05
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 18 PVKDRELDLRGYKIPVIENMGA--TLDQFDTIDFSNNDIRKIDG--FPLLKRLSCLFFNN 73
P ++LDL+ K+ + + A L + + ++N ++ + F LK L L+ +
Sbjct: 36 PADTKKLDLQSNKLSSLPS-KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 74 NRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
N++ + + + L NL L L N ++ L +L KL L L +N
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYN 143
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 43.0 bits (102), Expect = 1e-04
Identities = 39/228 (17%), Positives = 68/228 (29%), Gaps = 40/228 (17%)
Query: 22 RELDLRGYKI------PVIENMGATLDQFDTIDFSNNDIRKIDGFPL------LKRLSCL 69
REL L K+ + + + T+ I L + L L
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289
Query: 70 FFNNNRI-----VRIAENLQENLPNLETLILTGNNI-----QELGDLDPLSTLPKLKTLC 119
N + + E L E LE+L + + + L+ L L
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV--LAQNRFLLELQ 347
Query: 120 LLHNPVINRPHYRLYVAFKLPQVKL--LDFSKVKL---------KALMNVMFGTEIILSG 168
+ +N + + L P L L + + L+ E+ LS
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407
Query: 169 DSI-DAGDQALF--IMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKS 213
+ + DAG L + L+ L+ + S RL+ + K
Sbjct: 408 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYW--SEEMEDRLQALEKD 453
Score = 42.3 bits (100), Expect = 2e-04
Identities = 34/215 (15%), Positives = 67/215 (31%), Gaps = 44/215 (20%)
Query: 22 RELDLRGYKI---------PVIENMGATLDQFDTIDFSNNDIRKI------DGFPLLKRL 66
EL+LR ++ ++ + + N + L L
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQ---KLSLQNCCLTGAGCGVLSSTLRTLPTL 115
Query: 67 SCLFFNNNRI-----VRIAENLQENLPNLETLILTGNNI-----QELGDLDPLSTLPKLK 116
L ++N + + E L + LE L L ++ + L + L P K
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV--LRAKPDFK 173
Query: 117 TLCLLHNPVINRPHYRLYVAFKLPQVKL--LDFSKVKL---------KALMNVMFGTEII 165
L + +N + L K +L L + + + E+
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233
Query: 166 LSGDSI-DAGDQAL--FIMNHRTRLDWNFLWGCMF 197
L + + D G L +++ +RL ++W C
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268
Score = 35.3 bits (82), Expect = 0.034
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 45 DTIDFSNNDIRKIDGF----PLLKRLSCLFFNNNRI-----VRIAENLQENLPNLETLIL 95
++D ++ + PLL++ + ++ + I+ L+ N P L L L
Sbjct: 6 QSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNL 63
Query: 96 TGNNIQELGDLDPLSTL-----PKLKTLCLLHN 123
N + ++G + + K++ L L +
Sbjct: 64 RSNELGDVG-VHCVLQGLQTPSCKIQKLSLQNC 95
Score = 34.2 bits (79), Expect = 0.076
Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 32/123 (26%)
Query: 22 RELDLRGYKIPVIENMGAT-----LDQFDT----IDFSNNDIRKIDGFPLL-------KR 65
EL + ++ E+ G L Q + + ++ D+ L
Sbjct: 344 LELQISNNRL---EDAGVRELCQGLGQPGSVLRVLWLADCDVSD-SSCSSLAATLLANHS 399
Query: 66 LSCLFFNNNRI-----VRIAENLQENLPNLETLILTGNNI-----QELGDLDPLSTLPKL 115
L L +NN + +++ E++++ LE L+L L L P L
Sbjct: 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL--EKDKPSL 457
Query: 116 KTL 118
+ +
Sbjct: 458 RVI 460
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 43.0 bits (102), Expect = 2e-04
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 46 TIDFSNNDIR-KIDGFPLLKRLSCLFFNNNRIV-RIAENLQ-ENLPNLETLILTGNNIQE 102
++ SN+ I + GF L+ L + N + + + L+ L ++ N +
Sbjct: 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140
Query: 103 LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
G + L L+ L L N + ++ ++K L S
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186
Score = 41.8 bits (99), Expect = 4e-04
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 46 TIDFSNNDIR-KIDGFPLLKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNNIQEL 103
+D S+N+ I L L + N++ + + L+ L ++ N
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFV-- 260
Query: 104 GDLDPLSTLPKLKTLCLLHN 123
G + P L L+ L L N
Sbjct: 261 GPI-PPLPLKSLQYLSLAEN 279
Score = 41.4 bits (98), Expect = 5e-04
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 46 TIDFSNNDIRKIDG-FP--LLKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNNIQ 101
++ S+N + G P LK L L N+ I + L L L L+GN+
Sbjct: 251 LLNISSN---QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 102 ELGDLDP-LSTLPKLKTLCLLHN 123
G + P + L++L L N
Sbjct: 308 --GAVPPFFGSCSLLESLALSSN 328
Score = 36.4 bits (85), Expect = 0.019
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 19/88 (21%)
Query: 46 TIDFSNNDI-----RKIDGFPLLKRLSCLFFNNNRIVRIAENLQ-----ENLPNLETLIL 95
+D S N I L L + N + NLE L +
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGN-------KISGDVDVSRCVNLEFLDV 207
Query: 96 TGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ NN + L L+ L + N
Sbjct: 208 SSNNFS--TGIPFLGDCSALQHLDISGN 233
Score = 36.0 bits (84), Expect = 0.021
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 15/87 (17%)
Query: 46 TIDFSNNDIRKIDG------FPLLKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGN 98
+ + N K G L+ L + N + + LE+L L+ N
Sbjct: 273 YLSLAEN---KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSN 328
Query: 99 NIQELGDLDP--LSTLPKLKTLCLLHN 123
N G+L L + LK L L N
Sbjct: 329 NFS--GELPMDTLLKMRGLKVLDLSFN 353
Score = 34.5 bits (80), Expect = 0.070
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 46 TIDFSNNDIRKIDG-FPL----LKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNN 99
T+ N + G P L+ + +NNR+ I + + L NL L L+ N+
Sbjct: 470 TLILDFN---DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNS 525
Query: 100 IQELGDL-DPLSTLPKLKTLCLLHN 123
G++ L L L L N
Sbjct: 526 FS--GNIPAELGDCRSLIWLDLNTN 548
Score = 33.7 bits (78), Expect = 0.14
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 86 NLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+L LE+L L+ ++I G + L +L L N
Sbjct: 75 SLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRN 110
Score = 33.0 bits (76), Expect = 0.25
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 30 KIPV-IENMGATLDQFDTIDFSNN----DIRKIDGFPLLKRLSCLFFNNNRIV-RIAENL 83
++P + N+ A+L T+D S+N I L L+ NN +I L
Sbjct: 358 ELPESLTNLSASLL---TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 84 QENLPNLETLILTGNNI-----QELGDLDPLSTL 112
N L +L L+ N + LG L L L
Sbjct: 415 S-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Score = 32.6 bits (75), Expect = 0.28
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 33/107 (30%)
Query: 46 TIDFSNNDIRKIDG-FPL----LKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNN 99
++ S N + G P L +L L N + I + L + LETLIL N+
Sbjct: 422 SLHLSFN---YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFND 477
Query: 100 I-----QELGDLDPL------------------STLPKLKTLCLLHN 123
+ L + L L L L L +N
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Score = 29.9 bits (68), Expect = 2.1
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 19/89 (21%)
Query: 46 TIDFSNNDIRKIDG-FPL----LKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNN 99
+D S N G P L L ++N + + + L+ L L+ N
Sbjct: 298 GLDLSGN---HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 100 IQ-----ELGDLDPLSTLPKLKTLCLLHN 123
L +L L TL L N
Sbjct: 355 FSGELPESLTNL-----SASLLTLDLSSN 378
Score = 28.7 bits (65), Expect = 4.4
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 40 TLDQFDTIDFSNNDIRKIDG-FPL----LKRLSCLFFNNNRIV-RIAENLQENLPNLETL 93
+D S N + G P + L L +N I I + + +L L L
Sbjct: 630 NNGSMMFLDMSYN---MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNIL 685
Query: 94 ILTGNNI-----QELGDLDPLSTL 112
L+ N + Q + L L+ +
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEI 709
Score = 28.3 bits (64), Expect = 6.7
Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 28/132 (21%)
Query: 46 TIDFSNNDIRKIDGFPL----LKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNNI 100
I SNN + P L+ L+ L +NN I L + +L L L N
Sbjct: 494 WISLSNNRL--TGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLF 550
Query: 101 -----QELGDL--------------DPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
+ + K N + + + +L
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL-NRLST 609
Query: 142 VKLLDFSKVKLK 153
+ +
Sbjct: 610 RNPCNITSRVYG 621
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 3e-04
Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 47/173 (27%)
Query: 24 LDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDG---F---------PLLKRLSCLFF 71
L LR K P + LDQ I FS RK+ F LL S L
Sbjct: 391 LTLRKAKAP------SGLDQ-SRIPFSE---RKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 72 NN--NRIVRI-AENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINR 128
+ V A+++Q +P +T G++++ L S ++ C++ PV
Sbjct: 441 KDLVKNNVSFNAKDIQ--IPVYDTF--DGSDLRVLSG----SISERI-VDCIIRLPV--- 488
Query: 129 PHYRLYVAFKLPQVKLLDF---SKVKLKALMNVMF---GTEIILSGDSIDAGD 175
+ FK + LDF L L + G +I++G ++D
Sbjct: 489 -KWETTTQFKATHI--LDFGPGGASGLGVLTHRNKDGTGVRVIVAG-TLDINP 537
Score = 41.6 bits (97), Expect = 5e-04
Identities = 68/400 (17%), Positives = 117/400 (29%), Gaps = 144/400 (36%)
Query: 83 LQENLPNLETLILTGNNIQEL-GDLDPLSTLPKLKTLCLLHN-----PVINRP------- 129
L L E L GN+I L L + +KT L+ N + RP
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 130 ---------HYRLYVAF-----------KLPQVKLLDFSKVKLKALMNVMFGTEIILSGD 169
+ +L F +L L V + L+ T L
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEEL--RDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 170 SIDAG-------DQALFIMNHRTRLDWNFLWGCMFHASRP-S---------AH------- 205
++DA + ++ N D ++L S P S AH
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYL------LSIPISCPLIGVIQLAHYVVTAKL 255
Query: 206 ------RLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWDSDQQAMTEQLDY-FHDI---- 254
L+ LK H+ G + A + +W+S ++ + + F I
Sbjct: 256 LGFTPGELRSYLKGATGHSQG----LVTAVAIAETDSWESFFVSVRKAITVLFF-IGVRC 310
Query: 255 --QHPVQEKQEAAALFKSKKG----------------KELQKEISKK------------- 283
+P + L S + +++Q ++K
Sbjct: 311 YEAYPNTS-LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 284 ----AKTFV---PGAALQDLSN------IPTG-NQLNAVYDITVGYLGTIPQSEMD-AVH 328
AK V P +L L+ P+G +Q IP SE
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ------------SRIPFSERKLKFS 417
Query: 329 GKF-PSQAHFHIKKYSTDSLPVSDTDAMKAWLNQIWAEKE 367
+F P + FH + + + D +K ++ + K+
Sbjct: 418 NRFLPVASPFH-SHLLVPASDLINKDLVKNNVS--FNAKD 454
Score = 40.4 bits (94), Expect = 0.001
Identities = 72/410 (17%), Positives = 115/410 (28%), Gaps = 124/410 (30%)
Query: 69 LFFNNNRIVRIAENLQE----NLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
FF A LQE LP + D +T +L
Sbjct: 26 SFFI-------ASQLQEQFNKILPE---------PTEGFAADDEPTTPAELVG------- 62
Query: 125 VINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFGTEIILSGDSIDAGDQALFIMNHR 184
+ YV+ + K+ F +V L + F L G+ I A L N
Sbjct: 63 -----KFLGYVSSLVEPSKVGQFDQV-LNLCLT-EFENCY-LEGNDIHALAAKLLQENDT 114
Query: 185 TRLDWNFLWGCMFHASRPSAHRLKMVLKSP-IRHAP-GPGWVMQIAGFLYIERNWDSDQQ 242
T + L A + S R G ++ I G Q
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-----------GQ 163
Query: 243 AMTEQLDYFHDIQ------HP-VQE-KQEAAALFKSKKGKELQKEISKKAKTFVPG---- 290
T+ DYF +++ H V + + +A EL + K F G
Sbjct: 164 GNTD--DYFEELRDLYQTYHVLVGDLIKFSAETLS-----ELIRTTLDAEKVFTQGLNIL 216
Query: 291 AALQDLSNIPTGNQLNAVYDITVGYLGTIPQSEMDAVHGKFP----SQ-AHFHIKKYSTD 345
L++ SN P YL +IP S P Q AH+ +
Sbjct: 217 EWLENPSNTPD-----------KDYLLSIPIS--------CPLIGVIQLAHYVVTAKLLG 257
Query: 346 SLPVSDTDAMKAWLNQI--------------WAEKEAHLNRFYDKGYFDGGKESRSKQ-- 389
P +K W + + +F G R +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG---VRCYEAY 314
Query: 390 P---ISPSA-EEVWKIKEA----------ISKASSLEEIERLNKLLQSGQ 425
P + PS E+ + E +++ + + + N L +G+
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Score = 31.2 bits (70), Expect = 0.76
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 382 GKESRSKQPISPSAEEVWKIKEAISKAS---SLEEIERLN---KLLQSGQIPGREDAENH 435
G + S +A++VW + K + S+ +I N + G G+ EN+
Sbjct: 1632 GMDLYKT---SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 39.7 bits (93), Expect = 0.001
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 45 DTIDFSNNDIRKIDGFPL---LKRLSCLFFNNNRI-----VRIAENLQENLPNLETLILT 96
D ++ ++ + L R L N + + + L + + TL L+
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS 163
Query: 97 GNNIQELG--DL-DPLSTLPKLKTLCLLHN 123
N + G L + L+ + L LLH
Sbjct: 164 NNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193
Score = 37.0 bits (86), Expect = 0.009
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 63 LKRLSCLFFNNNRI-----VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKT 117
L L L R+ +A L L+ + L + G L + +
Sbjct: 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130
Query: 118 LCLLHN 123
L L N
Sbjct: 131 LGLQLN 136
Score = 33.5 bits (77), Expect = 0.12
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 64 KRLSCLFFNNNRI-----VRIAENLQENLPNLETLILTGNNI-----QELGDLDPLSTLP 113
++L L N + +A +E+ P+LE L L N + Q L DL +
Sbjct: 211 RQLQELNVAYNGAGDTAALALARAAREH-PSLELLHLYFNELSSEGRQVLRDLGGAAEGG 269
Query: 114 KLKTLCLLHNPVI 126
+ L +
Sbjct: 270 ARVVVSLTEGTAV 282
Score = 31.6 bits (72), Expect = 0.48
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 18/121 (14%)
Query: 22 RELDLRGYKIPV--IENMGATLDQFDTIDFSNNDIRKIDGFPL---LKRLSC----LFFN 72
E++L ++ + + + + N + L L C L +
Sbjct: 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS 163
Query: 73 NNRI-----VRIAENLQENLPNLETLILTGNNIQELG--DL-DPLSTLPKLKTLCLLHNP 124
NN + + E L N ++ L L + + G L L +L+ L + +N
Sbjct: 164 NNPLTAAGVAVLMEGLAGN-TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222
Query: 125 V 125
Sbjct: 223 A 223
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 39.6 bits (91), Expect = 0.002
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 65 RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD-----LDPL---STLPKLK 116
+ ++ + I + +LPNLE L+L D PL P LK
Sbjct: 199 EIISGGLPDSVVEDILGS---DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK 255
Query: 117 TLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKL 152
L ++ N + LPQ++ +D S L
Sbjct: 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291
Score = 35.7 bits (81), Expect = 0.028
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 53 DIRKIDGFPLLKRLSCLFFNNNRIV-RIAENLQE--NLPNLETLILTGNNIQELGD---L 106
R + L L + + E E LP LET+ ++ + + G L
Sbjct: 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300
Query: 107 DPLSTLPKLKTLCLLHNPV 125
D + + LK + + +N +
Sbjct: 301 DHVDKIKHLKFINMKYNYL 319
Score = 31.5 bits (70), Expect = 0.56
Identities = 7/76 (9%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 48 DFSNNDIRKIDGFPLLKRLSCLFFNNNRI-----VRIAENLQENLPNLETLILTGNNIQE 102
+ N + +L +L + + + + +++ + +L+ + + N + +
Sbjct: 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD-KIKHLKFINMKYNYLSD 321
Query: 103 LGDLDPLSTLPKLKTL 118
+ +LP +
Sbjct: 322 EMKKELQKSLPMKIDV 337
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 37.0 bits (86), Expect = 0.007
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 45 DTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQE 102
+ +D + + + F L +L+ L + N++ ++ + ++L L TL L N +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 103 L--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
L G D L+ +L L L N + + P F +L ++K L + +L+++
Sbjct: 98 LPLGVFDHLT---QLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSI 146
Score = 34.3 bits (79), Expect = 0.048
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 41 LDQFDTIDFSNNDIRKI-DG-FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
L Q D + N ++ + G F L +L L N N++ I + L NL+TL L+ N
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 99 NIQELGDLDPLSTLPKLKTLCLLHNP 124
+Q + L KL+T+ L N
Sbjct: 166 QLQSVPH-GAFDRLGKLQTITLFGNQ 190
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 37.0 bits (86), Expect = 0.009
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 18/96 (18%)
Query: 46 TIDFSNNDIRKI-------DGFPLLKRLSCLFFNNNRI-----VRIAENLQENLPNLETL 93
T+ N IR +G + L L +N +A L+ PNL L
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-PNLREL 249
Query: 94 ILTGNNI-----QELGDLDPLSTLPKLKTLCLLHNP 124
L + + D L+TL L +N
Sbjct: 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285
Score = 35.8 bits (83), Expect = 0.021
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 15/74 (20%)
Query: 46 TIDFSNNDIRKIDGFPLL---------KRLSCLFFNNNRI-----VRIAENLQENLPNLE 91
+ ++ + G + L L N I + + E +P+L
Sbjct: 248 ELGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306
Query: 92 TLILTGNNIQELGD 105
L L GN E D
Sbjct: 307 FLELNGNRFSEEDD 320
Score = 35.5 bits (82), Expect = 0.027
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 26/102 (25%)
Query: 46 TIDFSNNDIRKIDGFPL------LKRLSCLFFNNNRI-----VRIAENLQENL------- 87
T+ S+N PL L L+ +NN + +IA LQE
Sbjct: 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKN 157
Query: 88 -PNLETLILTGNNIQE-----LGDLDPLSTLPKLKTLCLLHN 123
P L ++I N ++ + L T+ ++ N
Sbjct: 158 APPLRSIICGRNRLENGSMKEWAKT--FQSHRLLHTVKMVQN 197
Score = 33.1 bits (76), Expect = 0.17
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 27/101 (26%)
Query: 46 TIDFSNNDIRKIDGFPLL-------KRLSCLFFNNNRIVR-----------IAENLQENL 87
I S N I + L K L F++ R + + L +
Sbjct: 36 EIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC- 93
Query: 88 PNLETLILTGNNI-----QELGDLDPLSTLPKLKTLCLLHN 123
P L T+ L+ N + L D LS L+ L L +N
Sbjct: 94 PKLHTVRLSDNAFGPTAQEPLIDF--LSKHTPLEHLYLHNN 132
Score = 33.1 bits (76), Expect = 0.17
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 64 KRLSCLFFNNNRI-----VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTL----PK 114
L + NR+ A+ Q + L T+ + N I+ G L +
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217
Query: 115 LKTLCLLHNPV 125
LK L L N
Sbjct: 218 LKVLDLQDNTF 228
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 37.0 bits (86), Expect = 0.010
Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 29/129 (22%)
Query: 22 RELDLRGYKI---------PVIENMGATLDQFDTIDFSNNDIRKIDGFPLL--------K 64
L+LRG + ++ + A ++ +++ N++ L
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVN---SLNLRGNNLAS-KNCAELAKFLASIPA 196
Query: 65 RLSCLFFNNNRI-----VRIAENLQENLPNLETLILTGNNIQELG--DL-DPLSTLPKLK 116
++ L + N + +A ++ +L L N + +L +L L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256
Query: 117 TLCLLHNPV 125
T+ L ++ V
Sbjct: 257 TVYLDYDIV 265
Score = 35.8 bits (83), Expect = 0.024
Identities = 15/133 (11%), Positives = 46/133 (34%), Gaps = 23/133 (17%)
Query: 22 RELDLRGYKI-----PVIENMGATLDQFDTIDFSNNDIRKI---------DGFPLLKRLS 67
L+L + ++ + +L T+ + ++ + FP ++++
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287
Query: 68 CLFFNNNRI-----VRIAENLQENLPNLETLILTGNNIQELG----DLDPLSTLPKLKTL 118
+ N I + I+ ++E + L + +++ L+ +L+
Sbjct: 288 LVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRES 347
Query: 119 CLLHNPVINRPHY 131
P++ H+
Sbjct: 348 IQTCKPLLEHHHH 360
Score = 32.0 bits (73), Expect = 0.36
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 64 KRLSCLFFNNNRI-----VRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPK---- 114
++ L + N + V + + ++ +L L+GN++ + + L
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 115 LKTLCLLHN 123
+ +L L N
Sbjct: 82 VTSLNLSGN 90
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 35.2 bits (81), Expect = 0.010
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 86 NLP-NLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHNP 124
P + L+LTGNN+ L G LD L P L+T L NP
Sbjct: 28 AFPVDTTELVLTGNNLTALPPGLLDAL---PALRTAHLGANP 66
Score = 27.5 bits (61), Expect = 4.4
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 69 LFFNNNRIVRIAENLQENLPNLETLILTGN 98
L N + + L + LP L T L N
Sbjct: 36 LVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 35.2 bits (81), Expect = 0.019
Identities = 15/89 (16%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 47 IDFSNNDI-----RKIDGFPLLKRLS---CLFFNNNRIVRIAENLQENLPNLETLILTGN 98
ID +++ I ++G ++++ C + + + R++ L+ ++ + +
Sbjct: 66 IDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS-QLENLQKSMLEMEIISC 124
Query: 99 -NIQELGDLDPLSTLPKLKTLCLLHNPVI 126
N+ + G + L LK L L P +
Sbjct: 125 GNVTDKG-IIALHHFRNLKYLFLSDLPGV 152
Score = 27.5 bits (61), Expect = 5.7
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 65 RLSCLFFNNNRIVRIAENLQENLPNLETLILTG-NNIQELGDLDPLSTLPK----LKTLC 119
++ + ++ I+ I + E L +E + L + I++ L+ LS L + +
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEME 120
Query: 120 LLHNPVI 126
++ +
Sbjct: 121 IISCGNV 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 35.6 bits (82), Expect = 0.027
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 60 FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLC 119
K L CL + + + L TL L+ +Q + L PKL+ L
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320
Query: 120 LLHN 123
+L
Sbjct: 321 VLDY 324
Score = 33.7 bits (77), Expect = 0.11
Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 20/135 (14%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKI-DGFPLLKRLS---CLFFNNNRIV 77
L + + T++ + I + L+RLS L +
Sbjct: 400 TRFRLCI--------IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL--TDKVFE 449
Query: 78 RIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF 137
I +E L + +LG LS L+ L + P ++ A
Sbjct: 450 YIGTYA----KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN--AS 503
Query: 138 KLPQVKLLDFSKVKL 152
KL ++ L S +
Sbjct: 504 KLETMRSLWMSSCSV 518
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 35.7 bits (82), Expect = 0.030
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 59 GFPLLKRLSCLFFNNNRIVRIA-ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKT 117
G L+R + + + + + PN+ ++L + G ++ P L+
Sbjct: 434 GCKKLRRF-AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK 492
Query: 118 LCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKL 152
L + R KLP ++ L +
Sbjct: 493 LEMRGCCFSERAIAAA--VTKLPSLRYLWVQGYRA 525
Score = 34.1 bits (78), Expect = 0.082
Identities = 12/68 (17%), Positives = 23/68 (33%)
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
PNL+ L + G E ++ LP L+ L + + +A
Sbjct: 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW 540
Query: 141 QVKLLDFS 148
++L+
Sbjct: 541 NIELIPSR 548
Score = 33.0 bits (75), Expect = 0.19
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 4/60 (6%)
Query: 63 LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
L RL + N + + + L L ++ + P L+ L +
Sbjct: 272 LCRLGLSYMGPNEMPILFPFA----AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327
Score = 31.5 bits (71), Expect = 0.64
Identities = 7/71 (9%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 64 KRLSCLFFNNNRIVRIA----ENLQENLPNLETLILTGNNIQELGDLD---PLSTLPKLK 116
+++ L + L ++ +LE L ++ D L
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223
Query: 117 TLCLLHNPVIN 127
++ + ++
Sbjct: 224 SVKVGDFEILE 234
Score = 28.4 bits (63), Expect = 5.2
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 85 ENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
+ LE + + ++I + L L L+
Sbjct: 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 34.8 bits (81), Expect = 0.042
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 63 LKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNNIQELGDLDP--LSTLPKLKTLC 119
L +L L+ + + I + L + L TL + N + G L P +S+LP L +
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALS--GTL-PPSISSLPNLVGIT 155
Query: 120 LLHN 123
N
Sbjct: 156 FDGN 159
Score = 34.0 bits (79), Expect = 0.079
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 86 NLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+ N + + L N++ DL + L L L +N
Sbjct: 219 SDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNN 254
Score = 33.7 bits (78), Expect = 0.092
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 46 TIDFSNNDIRKIDGFPL----LKRLSCLFF-NNNRIV-RIAENLQENLPNLETLILTGNN 99
+D S ++ K P L L+ L+ N +V I + L L L +T N
Sbjct: 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTN 112
Query: 100 IQELGDL-DPLSTLPKLKTLCLLHN 123
+ G + D LS + L TL +N
Sbjct: 113 VS--GAIPDFLSQIKTLVTLDFSYN 135
Score = 32.1 bits (74), Expect = 0.30
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 12/67 (17%)
Query: 63 LKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTGNNI-----QELGDLDPLSTLPKLK 116
+K L L F+ N + + ++ +LPNL + GN I G L T
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTS---- 178
Query: 117 TLCLLHN 123
+ + N
Sbjct: 179 -MTISRN 184
Score = 30.6 bits (70), Expect = 0.82
Identities = 19/109 (17%), Positives = 29/109 (26%), Gaps = 33/109 (30%)
Query: 44 FDTIDFSNNDIRKIDG-----FPLLKRLSCLFFNNNRIV-RIAENLQENLPNLETLILTG 97
+D S N ++G F K + N + + + NL L L
Sbjct: 199 LAFVDLSRN---MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRN 253
Query: 98 NNI-----QELGDLDPLSTL-----------------PKLKTLCLLHNP 124
N I Q L L L +L + +N
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 30.6 bits (70), Expect = 0.90
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 45 DTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRI---VRIAENLQENLPNLETLILTG-N 98
T D N + D R++ L + + I +L NLP L L + G N
Sbjct: 29 PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGIN 87
Query: 99 NIQELGDL-DPLSTLPKLKTLCLLHN 123
N+ G + ++ L +L L + H
Sbjct: 88 NLV--GPIPPAIAKLTQLHYLYITHT 111
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 34.6 bits (80), Expect = 0.043
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 18 PVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIV 77
+ + +L+ + L+ D I +N+DI+ + G L + L N++
Sbjct: 18 FAETIKANLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH 76
Query: 78 RIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKL 115
I+ + L NL LILTGN +Q L G D L+ L +L
Sbjct: 77 DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114
Score = 33.5 bits (77), Expect = 0.10
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Query: 40 TLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNN 99
L + N + I L L+ L N++ + + + L NL+ L+L N
Sbjct: 61 YLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 100 IQEL--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLKAL 155
+Q L G D L+ L L L HN + + P F KL + LD S +L++L
Sbjct: 121 LQSLPDGVFDKLTN---LTYLNLAHNQLQSLPKG----VFDKLTNLTELDLSYNQLQSL 172
Score = 28.4 bits (64), Expect = 4.0
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 41 LDQFDTIDFSNNDIRKI-DG-FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
L ++ ++N ++ + G F L L+ L + N++ + E + + L L+ L L N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 99 NIQEL--GDLDPLSTLPKLKTLCLLHNP 124
++ + G D L+ L+ + L NP
Sbjct: 192 QLKSVPDGVFDRLT---SLQYIWLHDNP 216
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 33.5 bits (77), Expect = 0.077
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 45 DTIDFSNNDIRKIDG--FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQE 102
+D N ++ + F L L+ L+ N++ + + L +L L L+ N +Q
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 103 L--GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAF-KLPQVKLLDFSKVKLK 153
L G D L+ +LK L L N + + P F KL Q+K L + +LK
Sbjct: 91 LPNGVFDKLT---QLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQNQLK 137
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.12
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 323 EMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAMKA 357
E A+ K + +K Y+ DS P A+KA
Sbjct: 18 EKQALK-KLQAS----LKLYADDSAPAL---AIKA 44
Score = 31.5 bits (70), Expect = 0.27
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 13/33 (39%)
Query: 260 EKQEAAALFKSKKGKELQKEISKKAKTFVPGAA 292
EKQ K+LQ + K + +A
Sbjct: 18 EKQAL---------KKLQASL----KLYADDSA 37
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 32.2 bits (73), Expect = 0.27
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 65 RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
LS + + I L+ L L G + + ++ L+ L L L
Sbjct: 99 DLSNSVIEVSTLHGILSQC----SKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNL 149
Score = 32.2 bits (73), Expect = 0.29
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 61 PLLKRLS---CLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD--LDPLSTLPKL 115
+ +L+ + L PNL L L+ + L + L L
Sbjct: 195 ETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDSV--MLKNDCFQEFFQLNYL 249
Query: 116 KTLCLLHNPVI 126
+ L L I
Sbjct: 250 QHLSLSRCYDI 260
Score = 32.2 bits (73), Expect = 0.30
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Query: 63 LKRLSCLFFNNNRIVRIAENLQENLPNLETLILTG-NNIQELGDLDPLSTLPKLKTLCLL 121
+L L R+ N NL L L+G + E LS+ +L L L
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176
Query: 122 HNPVINRPHYRLYVAFKLPQVKLLDFS 148
H ++ VA + L+ S
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLS 203
Score = 31.0 bits (70), Expect = 0.75
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 11/85 (12%)
Query: 49 FSNNDIRKI-DGFPLLKRLS---CLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
FS ++ + L L+ C F + + + L L+G + L
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA---VAHVSETITQLNLSGYR-KNLQ 210
Query: 105 D--LDPLST-LPKLKTLCLLHNPVI 126
L L P L L L + ++
Sbjct: 211 KSDLSTLVRRCPNLVHLDLSDSVML 235
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 29.3 bits (66), Expect = 2.4
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 41 LDQFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGN 98
L + N + ++ G L L+ L + N++ I + L +L L GN
Sbjct: 111 LVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 3.3
Identities = 18/178 (10%), Positives = 53/178 (29%), Gaps = 43/178 (24%)
Query: 245 TEQLDY-FHDIQHPVQEKQEAAALFKSKKGKELQ-KEISKKAKTFVPGAALQDLSNIPTG 302
T + Y + DI ++ F K++ K+ + + +
Sbjct: 11 TGEHQYQYKDILSVFEDA------FV----DNFDCKDVQDMPKSILSKEEIDHIIMSK-- 58
Query: 303 NQLNAVYDITVGYLGTIPQSEMDAVHGKFPSQAH-----FHIKKYSTDSL-PVSDTDAMK 356
+ ++ + T+ + + V KF + F + T+ P T
Sbjct: 59 DAVSGTLRL----FWTLLSKQEEMVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 357 AWLNQIWAEKEAHLNRFYDKGYFDGGKESRSKQPISPSAEEVWKIKEAISKASSLEEI 414
++++ + +K + + K+++A+ + + +
Sbjct: 114 EQRDRLY-----------------NDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNV 153
Score = 29.1 bits (64), Expect = 3.5
Identities = 42/293 (14%), Positives = 82/293 (27%), Gaps = 88/293 (30%)
Query: 34 IENMGATLDQFDTIDFSNNDIRKIDGF------PLLKRL--SCLFFNNNRIVRIAENL-- 83
I + AT D + ++ I+ +++ F + I L
Sbjct: 337 IRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPS--AHIPTILLS 393
Query: 84 ---QENLPNLETLILTGNNIQELGDLDP-----------LSTLPKLKTLCLLHNPVINRP 129
+ + + +++ + L + P L KL+ LH +++
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-- 451
Query: 130 HYRLYVAFKLPQVKLLDFSKVKLKA-----LMNVMFGTEIILSGDSIDAGDQALFIMNHR 184
HY + F D L + + + E LF
Sbjct: 452 HYNIPKTFDSD-----DLIPPYLDQYFYSHIGHHLKNIE--------HPERMTLF---RM 495
Query: 185 TRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHA----PGPGWVMQIAGFL-----YIER 235
LD+ F L+ IRH G ++ L YI
Sbjct: 496 VFLDFRF-------------------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 236 NWDSDQQAMTEQLDYFHDIQHPVQEKQEA----AALFKSKKG------KELQK 278
N ++ + LD+ I+ + + AL + K++Q+
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>2q01_A Uronate isomerase; structural genomics, protein structure
initiative NEW YORK SGX research center for structural
genomics, nysgx; 2.34A {Caulobacter crescentus}
Length = 497
Score = 28.9 bits (64), Expect = 3.9
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 235 RNWDSDQQAMTEQLDYFH-------DIQHPV-----QEKQEAAALFKSKKGKELQKEISK 282
+W S +A + F D HP EA ALF S ++ E ++
Sbjct: 226 YSWKSYLEAHRLRRQAFIDAGATSSDHGHPTAATADLSDVEAEALFNSLVKGDVTPEKAE 285
Query: 283 KAKTFV 288
+ +
Sbjct: 286 LFRAQM 291
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 4.4
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 23/68 (33%)
Query: 235 RNWDSDQQAMTEQLDYFHDIQHPVQEKQEAAALFKSKKGKEL---------QKEISKK-- 283
R W +Q+ ++LD K + K K+L Q E +K
Sbjct: 88 RKWREEQRKRLQELD--------AASKVMEQEW-REKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 284 ---AKTFV 288
K F
Sbjct: 139 RIADKAFY 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 28.0 bits (63), Expect = 4.7
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 69 LFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL--GDLDPLSTLPKLKTLCLLHN 123
L+ NNN+I ++ + ++L NL+ L N + + G D L+ +L L L N
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT---QLTQLDLNDN 91
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 28.4 bits (64), Expect = 5.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 400 KIKEAISKASSLEEIERLNKLLQSGQIPGR 429
K+K I+K LEE L++ + GR
Sbjct: 313 KVKPMITKTMKLEEANEAIDNLENFKAIGR 342
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 28.0 bits (62), Expect = 7.8
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 339 IKKYSTDSLPVSDTDAMKAWLNQIWAEKEA-----HLNRFYDKGYFDGGKESRSKQPISP 393
I++ D + + + + W KE + RFY+ E + +
Sbjct: 665 IEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKD 724
Query: 394 SAEEVW-KIKEAISKASSLEEIERLN 418
+ ++ +AI + + +E
Sbjct: 725 IDRWMLHRLNKAIKETT--NALEEFR 748
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,717,035
Number of extensions: 403246
Number of successful extensions: 2012
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1276
Number of HSP's successfully gapped: 396
Length of query: 435
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 339
Effective length of database: 4,021,377
Effective search space: 1363246803
Effective search space used: 1363246803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)