RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18204
(435 letters)
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 114 bits (286), Expect = 5e-31
Identities = 106/152 (69%), Positives = 125/152 (82%)
Query: 2 VKLTADLIVQCMQYTNPVKDRELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFP 61
VKLTA+LI Q QYTN V+DRELDLRGYKIPVIEN+GATLDQFD IDFS+N+IRK+DGFP
Sbjct: 1 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60
Query: 62 LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLL 121
LL+RL L NNNRI RI E L + LP+L LILT N++ ELGDLDPL++L L LC+L
Sbjct: 61 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120
Query: 122 HNPVINRPHYRLYVAFKLPQVKLLDFSKVKLK 153
NPV N+ HYRLYV +K+PQV++LDF KVKLK
Sbjct: 121 RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 152
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 61.7 bits (149), Expect = 2e-12
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRK-IDGFPLLKRLSCLFFNNNRIVRIA 80
R L L + V+ ++ L +D S+N +R L+ L L ++N + +
Sbjct: 1 RVLHLAHKDLTVLCHLE-QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 81 ENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
L+ L+L N +Q+ + PL + P+L L L N + + +A LP
Sbjct: 60 GVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 141 QVKLL 145
V +
Sbjct: 118 SVSSI 122
Score = 32.8 bits (74), Expect = 0.022
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 46 TIDFSNNDIRKI---DGFPLLKRLSCLFFNNNRIVRIA---ENLQENLPNLETLI 94
+ NN +++ RL L N + + E L E LP++ +++
Sbjct: 69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 57.3 bits (137), Expect = 1e-09
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L + N+I I L +L LFF NN++ ++ NL N+ L N I
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQI 363
Query: 101 QELGDLDPLSTLPKLKTLCLLHN 123
DL PL+ L ++ L L
Sbjct: 364 S---DLTPLANLTRITQLGLNDQ 383
Score = 46.5 bits (109), Expect = 3e-06
Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 11/127 (8%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAE 81
EL L +I I + L ++ + N + I LK L+ L N I I+
Sbjct: 266 TELKLGANQISNISPLA-GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324
Query: 82 NLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
+L L+ L N + D+ L+ L + L HN + + L +
Sbjct: 325 --VSSLTKLQRLFFANNKVS---DVSSLANLTNINWLSAGHNQISDLTPLA-----NLTR 374
Query: 142 VKLLDFS 148
+ L +
Sbjct: 375 ITQLGLN 381
Score = 42.7 bits (99), Expect = 6e-05
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 48 DFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLD 107
++ L +++ L + I I + + E L NL + + N + D+
Sbjct: 28 VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGV-EYLNNLTQINFSNNQLT---DIT 82
Query: 108 PLSTLPKLKTLCLLHNPVINRPHY 131
PL L KL + + +N + +
Sbjct: 83 PLKNLTKLVDILMNNNQIADITPL 106
Score = 41.5 bits (96), Expect = 1e-04
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 36 NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95
++ A L +++ +NN I I +L L L N N++ I +L NL L L
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDL 248
Query: 96 TGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHY 131
N I +L PLS L KL L L N + N
Sbjct: 249 ANNQIS---NLAPLSGLTKLTELKLGANQISNISPL 281
Score = 33.1 bits (74), Expect = 0.057
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNI 100
L + +D S+N + I L L L NN+I I L NL+ L L GN +
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 231
Query: 101 QELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVM 159
+++G L++L L L L +N + N L ++ L ++ + +
Sbjct: 232 KDIG---TLASLTNLTDLDLANNQISNLAPL-----SGLTKLTELKLGANQISNISPLA 282
Score = 32.3 bits (72), Expect = 0.12
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNN 74
+ L K+ + ++ L + + +N I + L R++ L N+
Sbjct: 332 QRLFFANNKVSDVSSLA-NLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383
Score = 31.5 bits (70), Expect = 0.18
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 22 RELDLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNN 74
L I I+ + L+ I+FSNN + I L +L + NNN
Sbjct: 47 TTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 98
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 49.8 bits (118), Expect = 6e-08
Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 30/156 (19%)
Query: 25 DLRGYKIPVIENMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQ 84
+L+ ++ ++ + + +R L ++ + ++
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATL-RIIE 61
Query: 85 ENLPNLETLILTGNNIQELGDLDP-LSTLPKLK------------------------TLC 119
EN+P L +L L+ N + L D+ + P LK L
Sbjct: 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121
Query: 120 LLHNPV----INRPHYRLYVAFKLPQVKLLDFSKVK 151
L N + ++ Y + + P++ LD ++
Sbjct: 122 LDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELP 157
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 47.9 bits (112), Expect = 1e-06
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
++ SNN + ++ L RL L + N + + E NL+ L + N ++E D
Sbjct: 288 ELNVSNNKLIELP--ALPPRLERLIASFNHL----AEVPELPQNLKQLHVEYNPLREFPD 341
Query: 106 LDPLSTLPKLK 116
+ ++ L+
Sbjct: 342 I--PESVEDLR 350
Score = 42.5 bits (98), Expect = 6e-05
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 60 FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLC 119
L L L +NN++ L P LE LI + N++ E+ +L LK L
Sbjct: 280 CDLPPSLEELNVSNNKL----IELPALPPRLERLIASFNHLAEVPEL-----PQNLKQLH 330
Query: 120 LLHNP 124
+ +NP
Sbjct: 331 VEYNP 335
Score = 36.0 bits (81), Expect = 0.008
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 68 CLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVIN 127
+ N +L + P+LE L ++ N + EL L P+L+ L N +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL-----PPRLERLIASFNHLAE 318
Query: 128 RPHYRLYVAFKLPQVKLLDFSKVKLKALMNVM 159
P +K L L+ ++
Sbjct: 319 VPEL-------PQNLKQLHVEYNPLREFPDIP 343
Score = 33.6 bits (75), Expect = 0.039
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 62 LLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLL 121
L ++ L NN + +L E P+LE+L+ + N++ EL +L LK+L +
Sbjct: 36 LDRQAHELELNNLGL----SSLPELPPHLESLVASCNSLTELPEL-----PQSLKSLLVD 86
Query: 122 HN 123
+N
Sbjct: 87 NN 88
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 45.1 bits (105), Expect = 4e-06
Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 32/168 (19%)
Query: 17 NPVKDRELDLRGYKIPVIENMGATLDQFD---TIDFSNNDIRKIDGFPLLKRLSCLFF-- 71
+ +++L G IP IE M ATL + S N+I KI ++ L L
Sbjct: 21 VATEAEKVELHG-MIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGR 79
Query: 72 -------------------NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTL 112
+ + + E L NL L ++ N I G++D L+ L
Sbjct: 80 NLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139
Query: 113 PKLKTLCLLHNPVINRP-------HYRLYVAFKLPQVKLLDFSKVKLK 153
KL+ L L NP+ N YR+ V +LP +K LD V +
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVD 187
>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
{Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
Length = 367
Score = 46.2 bits (109), Expect = 4e-06
Identities = 22/259 (8%), Positives = 59/259 (22%), Gaps = 43/259 (16%)
Query: 144 LLDFSKVKLKALMNVMFGTEIILSG-DSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRP 202
L+DF + + + + + G + I NH+T D + + +
Sbjct: 105 LIDFGN-------SFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPY 157
Query: 203 SAHRLKMVLKSPIRHAPGPGWVMQIAGFLYIERNWD------SDQQAMTEQLDYFHDIQH 256
A V + P + + + ++
Sbjct: 158 IAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMAL 217
Query: 257 PVQEKQEAAALF--------KSKKGKELQKEISKKAKTFVPGAALQDLSNIPTGNQLNAV 308
++ + + G+ + + L S++P +
Sbjct: 218 LLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNM--RRLIQHSDVPG-----HL 270
Query: 309 YDITVGYLGTIPQS-------------EMDAVHGKFPSQAHFHIKKYSTDSLPVSDTDAM 355
+ + + +P + + F + + +A
Sbjct: 271 FPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEV-REAY 329
Query: 356 KAWLNQIWAEKEAHLNRFY 374
L A + L
Sbjct: 330 SKALFDSVAMQYNVLKTAI 348
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 45.4 bits (106), Expect = 6e-06
Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 5/156 (3%)
Query: 43 QFDTIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQ 101
+ S+ + K+ P + L NN+I I + +NL NL TLIL N I
Sbjct: 11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 102 ELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG 161
++ + L KL+ L L N + P +L + + +KV+ +
Sbjct: 69 KISP-GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE-NEITKVRKSVFNGLNQM 126
Query: 162 TEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMF 197
+ L + + + +L + +
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162
Score = 45.0 bits (105), Expect = 8e-06
Identities = 39/157 (24%), Positives = 60/157 (38%), Gaps = 12/157 (7%)
Query: 46 TIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQEL 103
+D NN I +I F LK L L NN+I +I+ L LE L L+ N ++EL
Sbjct: 35 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94
Query: 104 GDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFSKVKLKALMNVMFG-- 161
P L+ L + N I + ++ V L + +K + N F
Sbjct: 95 ----PEKMPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 162 ---TEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGC 195
+ I ++ +I Q L LD N +
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 186
Score = 32.7 bits (73), Expect = 0.065
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 63 LKRLSCLFFNNNRIVRIAEN------LQENLPNLETLILTGNNIQELGDLDPLSTLPKLK 116
K + ++ +NN I I N + + L N +Q ++ P ST +
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQP-STFRCVY 298
Query: 117 TLCLLH 122
+
Sbjct: 299 VRAAVQ 304
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 40.4 bits (93), Expect = 2e-04
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 65 RLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLH 122
+L+ L ++N+I I+ +LPNL + L N I D+ PL+ L + L +
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTN 226
Score = 36.9 bits (84), Expect = 0.002
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 84 QENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYR 132
Q +L + TL G + ++ + L L L L N + + +
Sbjct: 37 QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQITDLAPLK 82
Score = 33.1 bits (74), Expect = 0.048
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILT 96
T+ +N I I L L + NN+I ++ N NL + LT
Sbjct: 177 TLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLT 225
Score = 32.7 bits (73), Expect = 0.061
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 39 ATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRI 76
A LD T+ + I+G L L L +N+I
Sbjct: 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75
Score = 31.2 bits (69), Expect = 0.17
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 86 NLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLL 145
NL L TL N I D+ PL++LP L + L +N + + + ++
Sbjct: 171 NLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQISDVSPLA-----NTSNLFIV 222
Query: 146 DFS 148
+
Sbjct: 223 TLT 225
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 40.5 bits (93), Expect = 3e-04
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 67 SCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNP 124
NN + + L L L +L ++ NN+ G++ L + +N
Sbjct: 248 GLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLC--GEIPQGGNLQRFDVSAYANNK 302
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 37.9 bits (86), Expect = 0.002
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 48 DFSNNDIRKIDGFPLLKRLSCLFFNNNRI-----VRIAENLQENLPNLETLILTGNNIQE 102
+ L L N I + + E +P+L L L GN E
Sbjct: 257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316
Query: 103 LGDLDPLSTLPKLKTLCLLHN 123
D+ + + ++ +
Sbjct: 317 EDDV--VDEIREVFSTRGRGE 335
Score = 32.5 bits (72), Expect = 0.083
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 64 KRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDL---DPLSTLPKLKTLCL 120
K L + L E+ +++ ++L+GN I + +++ L+
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66
Query: 121 LHNPVINRPH 130
Sbjct: 67 SDIFTGRVKD 76
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 37.2 bits (84), Expect = 0.002
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 66 LSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
+NN + + ++ L ++ I L L L KL+ +
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNL 235
Score = 35.3 bits (79), Expect = 0.011
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 60 FPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLD 107
F L + RI + ENL L N+++L L+
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLE 242
Score = 26.8 bits (57), Expect = 4.6
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 72 NNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHY 131
+++ I +L N L ++ + S L+ + + N V+
Sbjct: 16 QESKVTEIPSDL---PRNAIELRFVLTKLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEA 71
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 36.9 bits (83), Expect = 0.004
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 66 LSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD---LDPLSTLPKLKTLCLLH 122
+ C ++ R + LQ + + L + E L P L L L
Sbjct: 9 IQCEELSDARWAELLPLLQ----QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64
Query: 123 NPVINRPHYRLYVAFKLPQVKL 144
N + + + + + P K+
Sbjct: 65 NELGDVGVHCVLQGLQTPSCKI 86
Score = 36.9 bits (83), Expect = 0.004
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 18/89 (20%)
Query: 46 TIDFSNNDIRKI------DGFPLLKRLSCLFFNNNRI-----VRIAENLQENLPNLETLI 94
+ ++ D+ L L +NN + +++ E++++ LE L+
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432
Query: 95 LTGNNI-----QELGDLDPLSTLPKLKTL 118
L L L P L+ +
Sbjct: 433 LYDIYWSEEMEDRLQAL--EKDKPSLRVI 459
Score = 33.8 bits (75), Expect = 0.039
Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 89 NLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK-LPQVKLLDF 147
++++L + + + + L L + + + L + + A + P + L+
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 148 SKVKL 152
+L
Sbjct: 63 RSNEL 67
Score = 31.1 bits (68), Expect = 0.30
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 85 ENLPNLETLILTGNNIQELGD---LDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQ 141
+ L L L ++ + L L+ L L +N + + +L + + P
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425
Query: 142 VKL--LDFSKVKL 152
L L +
Sbjct: 426 CLLEQLVLYDIYW 438
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 35.8 bits (81), Expect = 0.005
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 85 ENLPNLETLILTGNNIQELGDLDPLSTLPKLKTL 118
NL LE L ++ N + D+ L+ L L++L
Sbjct: 169 ANLTTLERLDISSNKVS---DISVLAKLTNLESL 199
Score = 35.4 bits (80), Expect = 0.006
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 61 PLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
L + Q +L + TL I+ +D + L L +
Sbjct: 15 TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINF 69
Query: 121 LHNPVINRPH 130
+N + +
Sbjct: 70 SNNQLTDITP 79
Score = 30.0 bits (66), Expect = 0.38
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNN 74
LDQ T+ I+ IDG L L+ + F+NN
Sbjct: 39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN 72
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 35.8 bits (81), Expect = 0.005
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 86 NLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCL 120
L L+ L L+ N+I DL L+ L L L L
Sbjct: 176 GLTKLQNLYLSKNHIS---DLRALAGLKNLDVLEL 207
Score = 35.8 bits (81), Expect = 0.006
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 84 QENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHN 123
Q L +++ +I ++I+ + + LP + L L N
Sbjct: 42 QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNGN 78
Score = 33.8 bits (76), Expect = 0.026
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 48 DFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGDLD 107
+ + L + + NN+ I + + +Q LPN+ L L GN + ++ L
Sbjct: 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQ-YLPNVTKLFLNGNKLTDIKPLA 87
Query: 108 PLS 110
L
Sbjct: 88 NLK 90
Score = 32.3 bits (72), Expect = 0.081
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 41 LDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRI 76
L+ D I +N+DI+ + G L ++ LF N N++
Sbjct: 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80
Score = 26.1 bits (56), Expect = 6.8
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 103 LGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFKLPQVKLLDFS 148
+ D+ PL+ L KL+ L L N + + L + +L+
Sbjct: 168 ISDIVPLAGLTKLQNLYLSKNHISDLRALA-----GLKNLDVLELF 208
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 33.2 bits (74), Expect = 0.052
Identities = 13/80 (16%), Positives = 28/80 (35%)
Query: 46 TIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELGD 105
T+D + ++ LL + F + + ++ + L+ + I+
Sbjct: 4 TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63
Query: 106 LDPLSTLPKLKTLCLLHNPV 125
LS KL+ L L +
Sbjct: 64 HGILSQCSKLQNLSLEGLRL 83
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 32.8 bits (73), Expect = 0.062
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 3/87 (3%)
Query: 46 TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQELG 104
++ ++ + P K + L + N + + L L L + +L
Sbjct: 14 EVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71
Query: 105 DLDPLSTLPKLKTLCLLHNPVINRPHY 131
L L L +
Sbjct: 72 VDGTLPVLGTLDLSHNQLQSLPLLGQT 98
Score = 30.1 bits (66), Expect = 0.42
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 36 NMGATLDQFDTIDFSNNDIRKIDGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLIL 95
+ ++ +N L+ L L N + I + L L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFL 202
Query: 96 TGN 98
GN
Sbjct: 203 HGN 205
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 31.3 bits (69), Expect = 0.13
Identities = 5/52 (9%), Positives = 12/52 (23%), Gaps = 2/52 (3%)
Query: 46 TIDFSNNDIRKI-DGFPLLKR-LSCLFFNNNRIVRIAENLQENLPNLETLIL 95
+ + + P + N + + L L L +
Sbjct: 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63
>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1
(NFATC2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 28.0 bits (62), Expect = 0.72
Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 161 GTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFHASRPSAHRLKMVLKSPIRHAPG 220
G ++IL+G + + + +F +W + + + ++ P
Sbjct: 18 GQQMILTGQNFTSESKVVFTEKTTDG---QQIWEMEATVDKDKSQPNMLFVEIPEYRNKH 74
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 28.6 bits (62), Expect = 1.5
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 4/126 (3%)
Query: 22 RELDLRGYKIPVIE-NMGATLDQFDTIDFSNNDIRKI--DGFPLLKRLSCLFFNNNRIVR 78
L L + + + L + +N ++ + D F L L+ LF + NRI
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167
Query: 79 IAENLQENLPNLETLILTGNNIQELGDLDPLSTLPKLKTLCLLHNPVINRPHYRLYVAFK 138
+ E L +L+ L+L N + + L +L TL L N + P L
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 139 LPQVKL 144
L ++L
Sbjct: 227 LQYLRL 232
Score = 26.7 bits (57), Expect = 6.3
Identities = 34/187 (18%), Positives = 52/187 (27%), Gaps = 31/187 (16%)
Query: 46 TIDFSNNDIRKI-DGFPLLKRLSCLFFNNNRIVRIAENLQENLPNLETLILTGNNIQE-- 102
T ++ + G P +F + NRI + NL L L N +
Sbjct: 15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 103 --------------------LGDLDP--LSTLPKLKTLCLLHNPVINRPHYRLYVAFKLP 140
L +DP L +L TL L + L
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 141 QVKLLDFSKVKL--KALMNVMFGTEIILSGDSIDAGDQALFIMNHRTRLDWNFLWGCMFH 198
+ L D + L ++ T + L G+ I + + F LD L
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVA 190
Query: 199 ASRPSAH 205
P A
Sbjct: 191 HVHPHAF 197
>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC
{Thermosynechococcus elongatus [TaxId: 146786]}
Length = 447
Score = 26.7 bits (59), Expect = 7.0
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 174 GDQALFIMNHRTRLDWNFLWG 194
+Q L ++ H L W G
Sbjct: 56 YEQGLILIPHIATLGWGVGPG 76
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein
3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 103
Score = 25.2 bits (55), Expect = 7.7
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 396 EEVWKIKEAISKASSLEEIERLNKLLQ 422
EE+ +I + + K S ++ E LL+
Sbjct: 12 EELLRIAKKLEKMVSRKKTEGALDLLK 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,650,230
Number of extensions: 78266
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 68
Length of query: 435
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,199,356
Effective search space: 416176532
Effective search space used: 416176532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)