BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18207
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q29RQ5|TRIM9_BOVIN E3 ubiquitin-protein ligase TRIM9 OS=Bos taurus GN=TRIM9 PE=2 SV=1
Length = 710
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 98/166 (59%), Gaps = 10/166 (6%)
Query: 129 VAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDP 188
VAWF DPG + D+ FS ++ TVTC Y+ RV L GFSKG HYWE +DRYD+ DP
Sbjct: 535 VAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTVDRYDNHPDP 594
Query: 189 SFGIARLDVARDEMLVKHRDLFAVLATCSR--------YSRLVRGIPDLFAVFATCSRYS 240
+FG+AR+DV +D ML K +A+ +R ++ G A ++
Sbjct: 595 AFGVARIDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDFN 654
Query: 241 R--LVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVP 284
R L I D GPIAF N+ G+F+PAVSLNR V VTLHTGL+VP
Sbjct: 655 RKTLTFFINDEQQGPIAFENVEGLFFPAVSLNRNVQVTLHTGLQVP 700
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQ 69
GKDDKAW+MY+D RSWFMH + H RTEGGI++G+T+GVLLD +R L FF+NDE Q
Sbjct: 610 GKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDFNRKTLTFFINDEQQ 667
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 101 EFVIDRYDSDTDPSFGIARLDVARDEML 128
E +DRYD+ DP+FG+AR+DV +D ML
Sbjct: 582 ELTVDRYDNHPDPAFGVARIDVMKDVML 609
>sp|Q91ZY8|TRIM9_RAT E3 ubiquitin-protein ligase TRIM9 OS=Rattus norvegicus GN=Trim9
PE=1 SV=1
Length = 710
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 129 VAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDP 188
VAWF DPG + D+ FS ++ TVTC Y+ RV L GFSKG HYWE IDRYD+ DP
Sbjct: 535 VAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTIDRYDNHPDP 594
Query: 189 SFGIARLDVARDEMLVKHRDLFAV---------LATCSRYSRLVRGIPD--LFAVFATCS 237
+FG+AR+DV +D ML K +A+ + S +R GI V +
Sbjct: 595 AFGVARIDVMKDMMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLN 654
Query: 238 RYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVPPEY 287
R + L + + GPIAF N+ G+F+PAVSLNR V VTLHTGL VP Y
Sbjct: 655 RKT-LTFFVNNEQQGPIAFENVEGLFFPAVSLNRNVQVTLHTGLPVPDFY 703
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQ 69
GKDDKAW+MY+D RSWFMH + H RTEGGI++G+T+GVLLDL+R L FFVN+E Q
Sbjct: 610 GKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKTLTFFVNNEQQ 667
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 101 EFVIDRYDSDTDPSFGIARLDVARDEML 128
E IDRYD+ DP+FG+AR+DV +D ML
Sbjct: 582 ELTIDRYDNHPDPAFGVARIDVMKDMML 609
>sp|Q9C026|TRIM9_HUMAN E3 ubiquitin-protein ligase TRIM9 OS=Homo sapiens GN=TRIM9 PE=1
SV=1
Length = 710
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 96/167 (57%), Gaps = 12/167 (7%)
Query: 129 VAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDP 188
VAWF DPG + D+ S ++ TVTC Y+ RV L GFSKG HYWE +DRYD+ DP
Sbjct: 535 VAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDP 594
Query: 189 SFGIARLDVARDEMLVKHRDLFAV---------LATCSRYSRLVRGIPD--LFAVFATCS 237
+FG+AR+DV +D ML K +A+ + S +R GI V +
Sbjct: 595 AFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLN 654
Query: 238 RYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVP 284
R L I D GPIAF N+ G+F+PAVSLNR V VTLHTGL VP
Sbjct: 655 R-KNLTFFINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLPVP 700
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQ 69
GKDDKAW+MY+D RSWFMH + H RTEGGI++G+T+GVLLDL+R L FF+NDE Q
Sbjct: 610 GKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKNLTFFINDEQQ 667
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 101 EFVIDRYDSDTDPSFGIARLDVARDEML 128
E +DRYD+ DP+FG+AR+DV +D ML
Sbjct: 582 ELTVDRYDNHPDPAFGVARMDVMKDVML 609
>sp|Q8C7M3|TRIM9_MOUSE E3 ubiquitin-protein ligase TRIM9 OS=Mus musculus GN=Trim9 PE=1
SV=2
Length = 817
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 93/162 (57%), Gaps = 12/162 (7%)
Query: 127 MLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDT 186
+ VAWF DPG + D+ FS ++ TVTC Y+ RV L GFSKG HYWE IDRYD+
Sbjct: 629 LAVAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTIDRYDNHP 688
Query: 187 DPSFGIARLDVARDEMLVKHRDLFAV---------LATCSRYSRLVRGIPD--LFAVFAT 235
DP+FG+AR+DV +D ML K +A+ + S +R GI V
Sbjct: 689 DPAFGVARIDVMKDMMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLD 748
Query: 236 CSRYSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTL 277
+R + L + + GPIAF N+ G+F+PAVSLNR V V+L
Sbjct: 749 LNRKT-LTFFVNNEQQGPIAFENVEGLFFPAVSLNRNVQVSL 789
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQ 69
GKDDKAW+MY+D RSWFMH + H RTEGGI++G+T+GVLLDL+R L FFVN+E Q
Sbjct: 706 GKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKTLTFFVNNEQQ 763
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 101 EFVIDRYDSDTDPSFGIARLDVARDEML 128
E IDRYD+ DP+FG+AR+DV +D ML
Sbjct: 678 ELTIDRYDNHPDPAFGVARIDVMKDMML 705
>sp|Q6ZTA4|TRI67_HUMAN Tripartite motif-containing protein 67 OS=Homo sapiens GN=TRIM67
PE=2 SV=3
Length = 783
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 129 VAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDP 188
VAWFT DP D+ S ++ T TC Y+ RV L FSKG HYWE +DRYD+ DP
Sbjct: 607 VAWFTFDPNSGHRDIILSNDNQTATCSSYDDRVVLGTAAFSKGVHYWELHVDRYDNHPDP 666
Query: 189 SFGIARLDVARDEMLVKHRDLFAV--------LATCSRYSRLVRGIPDLFAVFATCSRYS 240
+FG+AR V +D ML K +A+ C+ ++ G A +
Sbjct: 667 AFGVARASVVKDMMLGKDDKAWAMYVDNNRSWFMHCNSHTNRTEGGVCKGATVGVLLDLN 726
Query: 241 R--LVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVP 284
+ L I GP AF ++ GVF PA+SLNR V VTLHTGLEVP
Sbjct: 727 KHTLTFFINGQQQGPTAFSHVDGVFMPALSLNRNVQVTLHTGLEVP 772
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQ 69
GKDDKAW+MY+D RSWFMH + H RTEGG+ +G+TVGVLLDL++H L FF+N + Q
Sbjct: 682 GKDDKAWAMYVDNNRSWFMHCNSHTNRTEGGVCKGATVGVLLDLNKHTLTFFINGQQQ 739
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 101 EFVIDRYDSDTDPSFGIARLDVARDEML 128
E +DRYD+ DP+FG+AR V +D ML
Sbjct: 654 ELHVDRYDNHPDPAFGVARASVVKDMML 681
>sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=Mus musculus GN=Trim67
PE=2 SV=1
Length = 768
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 129 VAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDP 188
VAWFT DP D+ S ++ T TC Y+ RV L FSKG HYWE +DRYD+ DP
Sbjct: 592 VAWFTFDPNSGHRDIILSNDNQTATCSSYDDRVVLGTAAFSKGVHYWELHVDRYDNHPDP 651
Query: 189 SFGIARLDVARDEMLVKHRDLFAV--------LATCSRYSRLVRGIPDLFAVFATCSRYS 240
+FG+AR V +D ML K +A+ C+ ++ G A +
Sbjct: 652 AFGVARASVVKDMMLGKDDKAWAMYVDNNRSWFMHCNSHTNRTEGGVCKGATVGVLLDLN 711
Query: 241 R--LVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVP 284
+ L I GP AF ++ GVF PA+SLNR V VTLHTGLEVP
Sbjct: 712 KHTLTFFINGQQQGPTAFSHVDGVFMPALSLNRNVQVTLHTGLEVP 757
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQ 69
GKDDKAW+MY+D RSWFMH + H RTEGG+ +G+TVGVLLDL++H L FF+N + Q
Sbjct: 667 GKDDKAWAMYVDNNRSWFMHCNSHTNRTEGGVCKGATVGVLLDLNKHTLTFFINGQQQ 724
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 101 EFVIDRYDSDTDPSFGIARLDVARDEML 128
E +DRYD+ DP+FG+AR V +D ML
Sbjct: 639 ELHVDRYDNHPDPAFGVARASVVKDMML 666
>sp|Q2XXL4|VESP_POGBA Vespryn (Fragment) OS=Pogona barbata PE=2 SV=1
Length = 115
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 112 DPSFGIARLDVARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKG 171
DP L V++D+ V W + +S PD +PE T L GF+ G
Sbjct: 35 DPKTAHPNLVVSQDKKTVTW--VQEAQSVPD---NPERFNST------PCLLGSPGFTSG 83
Query: 172 AHYWEFVIDRYDSDTDPSFGIARLDVARDEML 203
HYWE Y + + + G+AR V R + L
Sbjct: 84 KHYWEV---EYGNQRELAAGVARKSVKRKDHL 112
>sp|Q7NFT5|PSAB_GLOVI Photosystem I P700 chlorophyll a apoprotein A2 OS=Gloeobacter
violaceus (strain PCC 7421) GN=psaB PE=1 SV=1
Length = 872
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 86/228 (37%), Gaps = 22/228 (9%)
Query: 41 GGISQGSTVGVLLDLDRHLLRFFVNDEPQPNFYNISNRLVAHTVPDILLNDTENRQKAVK 100
GG++ + L D+ H L V + Y +N + H++ +IL
Sbjct: 247 GGLNPATGTLWLTDIAHHHLAIAVIFIIAGHMYR-TNFGIGHSIKEILDAHKGPLTGEGH 305
Query: 101 EFVIDRYDSDTDPSFGIARLDVARDEMLVAWFTMDPGRSAPDLFFSPE-HTTVTCDGYEH 159
+ D ++ G+A + LVA T + P F+ P+ HTT+ H
Sbjct: 306 RGLYDTINNSLHFQLGLALASLGVVTSLVAQHTY----ALPAYFYMPQDHTTMAALYTHH 361
Query: 160 RVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVARDEMLVKHRD---LFAVLATC 216
+ + AH F + YD + + +AR+ + E L+ H LF T
Sbjct: 362 QYIAGFLMVGAFAHGAIFFVRDYDPKANENNVLARM-LEHKEALISHLSWVSLFLGFHTL 420
Query: 217 SRYSR----LVRGIPD-------LFAVFATCSRYSRLVRGIPDLFAGP 253
Y L G P+ +FA F +++ GIP LF GP
Sbjct: 421 GLYVHNDVMLAFGRPEDQLLIEPVFAQFVQVQS-GKIIEGIPALFGGP 467
>sp|Q810I2|TRI50_MOUSE E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus GN=Trim50 PE=2
SV=1
Length = 483
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 130 AWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVA------------LSVVGFSKGAHYWEF 177
A +DP + P L S +T V C R A L+ GFS G HYWE
Sbjct: 293 ASLKLDPATAHPLLELSKGNTVVHCGLLAQRRASQPERFDYSTCVLASKGFSWGRHYWEV 352
Query: 178 VIDRYDSDTDPSFGIARLDVARDEMLVK 205
V+ S +D G+ + +R L K
Sbjct: 353 VV---GSKSDWRLGVIKGTASRKGKLNK 377
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 132 FTMDPGRSAPDLFFSPEHTTVTCDGYEHRVA------------LSVVGFSKGAHYWEFVI 179
+DP + P L S +T V C R A L+ GFS G HYWE V+
Sbjct: 295 LKLDPATAHPLLELSKGNTVVHCGLLAQRRASQPERFDYSTCVLASKGFSWGRHYWEVVV 354
Query: 180 DRYDSDTDPSFGIARLDVARDEMLVK 205
S +D G+ + +R L K
Sbjct: 355 ---GSKSDWRLGVIKGTASRKGKLSK 377
>sp|P18160|SPLA_DICDI Dual specificity protein kinase splA OS=Dictyostelium discoideum
GN=splA PE=1 SV=3
Length = 2410
Score = 33.9 bits (76), Expect = 1.4, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
Query: 255 AFHNLYGVFYPAVSLNR-GVTVTLHTGLEVPP 285
AF N+YGVFYP+V+ N G+++ TG+ PP
Sbjct: 1179 AFSNVYGVFYPSVAFNEPGISI---TGVFGPP 1207
>sp|Q8WVV5|BT2A2_HUMAN Butyrophilin subfamily 2 member A2 OS=Homo sapiens GN=BTN2A2 PE=2
SV=2
Length = 523
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 20/140 (14%)
Query: 133 TMDPGRSAPDLFFSPEHTTVTCDGYEHRV------------ALSVVGFSKGAHYWEFVID 180
+DP + P+LF S + +V Y RV L F+ G HYWE ++
Sbjct: 330 VLDPDTAHPELFLSEDRRSVRRGPYRQRVPDNPERFDSQPCVLGWESFASGKHYWEVEVE 389
Query: 181 RYDSDTDPSFGIARLDVARD-EMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRY 239
T G+ R V R E+L+ ++ F L R + + + + R
Sbjct: 390 NVMVWT---VGVCRHSVERKGEVLLIPQNGFWTLEMFGNQYRALSSPERILPLKESLCRV 446
Query: 240 SRLVRGIPDLFAGPIAFHNL 259
+ D AG ++F+N+
Sbjct: 447 GVFL----DYEAGDVSFYNM 462
>sp|Q80V85|TRI62_MOUSE Tripartite motif-containing protein 62 OS=Mus musculus GN=Trim62
PE=2 SV=1
Length = 475
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 130 AWFTMDPGRSAPDLFFSPEHTTVTCDGYEHR----------VALSVVG---FSKGAHYWE 176
A TMDPG + L S + T V + V +SV+G FS G HYWE
Sbjct: 295 AALTMDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGVHYWE 354
Query: 177 FVI 179
V+
Sbjct: 355 VVV 357
>sp|Q30QV9|DNLJ_SULDN DNA ligase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=ligA PE=3 SV=1
Length = 652
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 111 TDPSFGIARLDVARDEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVA---LSVVG 167
+ P I L V +++ A F +S DLF +T +G++ + A L +G
Sbjct: 432 SKPCLNIDGLGV---KIVEALFNSGLVKSVVDLFDLTLEKLLTLEGFKEKKAQNLLDALG 488
Query: 168 FSKGAHYWEFV-------IDRYDSDT-DPSFGIARLDVARDEML 203
+KG YW FV I S T FG +D +DE++
Sbjct: 489 SAKGCEYWRFVNSLGIEHIGEVASKTLSAKFGSGFIDATKDEIV 532
>sp|Q6N7Y6|HMUV_RHOPA Hemin import ATP-binding protein HmuV OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=hmuV PE=3 SV=1
Length = 268
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 125 DEMLVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKG-AHYWEFVIDRYD 183
+E++ +DP ++AP F V D + HR ++ G + AH+ ++ +
Sbjct: 96 EEIVAMGADIDPRKAAP--LFDAALRDVGLDHFRHRDITTLSGGEQQRAHFARILVQLWS 153
Query: 184 SDTDPSFGIARLDVARDEMLVKHR-DLFAVLATCSRYSRLVRGI 226
+ D G+ LD + ++H+ DL C+R V I
Sbjct: 154 GEADAGPGLLLLDEPTSSLDIRHQLDLAETARRCARRGTTVIAI 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,661,243
Number of Sequences: 539616
Number of extensions: 4770215
Number of successful extensions: 11502
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 11473
Number of HSP's gapped (non-prelim): 50
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)